BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024916
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 31/241 (12%)
Query: 29 YGGEAWQSAHATFYGGNDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGAC 86
Y G+ W +A AT+YG + +G GGACG N+ Y TA + +F +G CG+C
Sbjct: 15 YNGK-WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSC 73
Query: 87 FEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAE 146
+E++C P+ C ++++T N+ P P HFDL+ F +A+
Sbjct: 74 YEVRCKEKPE-CSGNPVTVYITDMNYEP---IAPY-----------HFDLSGKAFGSLAK 118
Query: 147 -------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLITNVAGAGDIVKAS 195
GI+ V +RRV C+ G + + + N VL+ VA GDIV
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178
Query: 196 VKGSRTG-WMSLSRNWGQNWQSNSVLVGQ-SLSFRVTGSDRRTSTSWNIVPANWQFGQTF 253
++ + W + +WG W+ ++ + S R+T + + +++PANW+ +
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVY 238
Query: 254 T 254
T
Sbjct: 239 T 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 34/243 (13%)
Query: 31 GEAWQSAHATFYGGNDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFE 88
G+ W A +T+YG +G GGACGY ++ + T +T +F +G CG+CFE
Sbjct: 16 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFE 75
Query: 89 IKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKMAEY 147
IKC P+ C + +T N P P HFDL+ F MA+
Sbjct: 76 IKCTK-PEACSGEPVVVHITDDNE---------------EPIAPYHFDLSGHAFGAMAKK 119
Query: 148 -------RAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLITNVAGAGDIVKASV 196
AG + + +RRV C+ G + T + + N +L+ V G GD+V +
Sbjct: 120 GDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDI 179
Query: 197 KGS-RTGWMSLSRNWGQNWQSNS--VLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTF 253
K + W+ L +WG W+ ++ L G + R T + + +++P W+ ++
Sbjct: 180 KEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSY 238
Query: 254 TGK 256
K
Sbjct: 239 ESK 241
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 176 YFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQ 212
Y + V + + A +++A KG TGW +L WGQ
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQ 150
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 20 SVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNN 79
SV ++P + + HA F G++ + + GA Q YG N+ + T ++N
Sbjct: 276 SVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGA--------QNYGWNSCLVKTGVYNE 327
Query: 80 GLSCGACFEIKCAND 94
G C ND
Sbjct: 328 GDDLKECKPTLIVND 342
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 20 SVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNN 79
SV ++P + + HA F G++ + + GA Q YG N+ + T ++N
Sbjct: 273 SVKQKLPLLGTKPSTSPFHAVFXVGDNPASDIIGA--------QNYGWNSCLVKTGVYNE 324
Query: 80 GLSCGACFEIKCAND 94
G C ND
Sbjct: 325 GDDLKECKPTLIVND 339
>pdb|1RQR|A Chain A, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
pdb|1RQR|B Chain B, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
pdb|1RQR|C Chain C, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
Length = 299
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 167 IRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRN 209
+R T++G F L A AG+I ++ + G++S++RN
Sbjct: 236 LRLTLDGVLPFEAPLTPTFADAGEIGNIAIYLNSRGYLSIARN 278
>pdb|2V7T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7U|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7W|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
Length = 299
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 167 IRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRN 209
+R T++G F L A AG+I ++ + G++S++RN
Sbjct: 236 LRLTLDGVLPFEAPLTPTFADAGEIGNIAIYLNSRGYLSIARN 278
>pdb|2V7X|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
Length = 299
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 167 IRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRN 209
+R T++G F L A AG+I ++ + G++S++RN
Sbjct: 236 LRLTLDGVLPFEAPLTPTFADAGEIGNIAIYLNSRGYLSIARN 278
>pdb|1RQP|A Chain A, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|1RQP|B Chain B, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|1RQP|C Chain C, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|2C2W|A Chain A, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C2W|B Chain B, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C2W|C Chain C, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C4U|A Chain A, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|B Chain B, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|C Chain C, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|D Chain D, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|E Chain E, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|F Chain F, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C5H|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
pdb|2CBX|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2CBX|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2CBX|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2C4T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2C4T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2C4T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2CC2|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2CC2|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2CC2|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2V7V|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2V7V|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2V7V|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2C5B|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5B|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5B|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5H|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
pdb|2C5H|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
Length = 299
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 167 IRFTINGFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRN 209
+R T++G F L A AG+I ++ + G++S++RN
Sbjct: 236 LRLTLDGVLPFEAPLTPTFADAGEIGNIAIYLNSRGYLSIARN 278
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 176 YFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQN 213
Y + V + + A +++A KG TGW +L W N
Sbjct: 41 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTAN 78
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 176 YFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQN 213
Y + V + + A +++A KG TGW +L W N
Sbjct: 279 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTAN 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,739,812
Number of Sequences: 62578
Number of extensions: 377693
Number of successful extensions: 713
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 50
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)