Query 024916
Match_columns 260
No_of_seqs 144 out of 1007
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 2.2E-70 4.8E-75 489.6 28.3 229 29-258 25-256 (256)
2 PLN00050 expansin A; Provision 100.0 4.5E-70 9.7E-75 485.8 26.7 232 24-258 16-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 4.9E-63 1.1E-67 440.3 25.7 225 9-258 6-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 1.7E-27 3.6E-32 199.9 20.6 194 32-259 28-231 (232)
5 PLN03024 Putative EG45-like do 99.9 1.3E-26 2.8E-31 187.8 14.1 100 35-158 22-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 2E-27 4.4E-32 181.4 8.6 87 69-156 1-87 (87)
7 PLN00115 pollen allergen group 99.9 1.5E-22 3.1E-27 162.3 10.7 87 166-258 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 5E-22 1.1E-26 150.2 9.7 77 167-244 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 2.1E-19 4.5E-24 134.1 5.8 75 69-156 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 5E-10 1.1E-14 88.6 4.1 60 79-161 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.0 4.1E-05 8.8E-10 61.7 9.1 65 69-160 45-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00011 2.3E-09 64.4 11.0 96 37-164 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.7 0.00028 6E-09 62.9 10.1 61 82-162 118-178 (233)
14 PRK10672 rare lipoprotein A; P 97.3 0.0035 7.6E-08 59.3 11.7 93 36-160 80-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.4 0.077 1.7E-06 46.4 3.4 55 69-140 70-124 (201)
16 cd02854 Glycogen_branching_enz 70.8 10 0.00023 29.2 5.0 48 191-238 16-76 (99)
17 PRK10564 maltose regulon perip 69.7 14 0.00031 34.4 6.4 77 154-259 48-128 (303)
18 PF03404 Mo-co_dimer: Mo-co ox 64.6 12 0.00026 30.4 4.4 47 190-236 42-106 (131)
19 cd02110 SO_family_Moco_dimer S 58.5 20 0.00043 33.5 5.3 48 189-236 236-293 (317)
20 PF11770 GAPT: GRB2-binding ad 57.9 6.1 0.00013 33.2 1.5 18 1-18 10-27 (158)
21 TIGR02588 conserved hypothetic 48.5 1.5E+02 0.0032 24.1 8.4 67 165-232 34-119 (122)
22 PF01034 Syndecan: Syndecan do 46.6 7.5 0.00016 28.0 0.3 33 2-34 17-49 (64)
23 PF15176 LRR19-TM: Leucine-ric 45.4 13 0.00028 29.2 1.5 17 1-17 21-37 (102)
24 PLN00177 sulfite oxidase; Prov 42.6 83 0.0018 30.4 6.9 27 182-208 289-316 (393)
25 PF01102 Glycophorin_A: Glycop 36.5 25 0.00054 28.6 1.9 20 2-21 72-91 (122)
26 PHA02702 ORF033 IMV membrane p 36.4 25 0.00055 26.1 1.7 25 1-25 6-30 (78)
27 cd02111 eukary_SO_Moco molybdo 35.4 96 0.0021 29.6 6.0 55 182-236 269-339 (365)
28 PF08391 Ly49: Ly49-like prote 33.0 14 0.00031 29.8 0.0 24 2-25 8-31 (119)
29 PF10417 1-cysPrx_C: C-termina 32.1 26 0.00057 22.6 1.1 11 241-251 10-20 (40)
30 cd02855 Glycogen_branching_enz 30.6 1.9E+02 0.0041 21.4 5.9 34 204-237 49-85 (106)
31 cd02113 bact_SoxC_Moco bacteri 30.3 1.1E+02 0.0023 29.0 5.3 50 187-236 236-294 (326)
32 cd02114 bact_SorA_Moco sulfite 29.2 1.3E+02 0.0029 28.7 5.9 50 187-236 286-345 (367)
33 cd02861 E_set_proteins_like E 26.9 1.3E+02 0.0028 21.8 4.3 45 192-237 14-60 (82)
34 PF03100 CcmE: CcmE; InterPro 25.3 97 0.0021 25.0 3.6 30 223-252 71-101 (131)
35 PRK10301 hypothetical protein; 24.0 1.1E+02 0.0025 24.4 3.8 27 146-172 95-124 (124)
36 PRK13701 psiB plasmid SOS inhi 23.8 2.8E+02 0.0061 23.1 6.0 45 149-197 57-105 (144)
37 PRK13159 cytochrome c-type bio 23.2 97 0.0021 26.2 3.3 28 224-251 73-101 (155)
38 PF12273 RCR: Chitin synthesis 22.3 55 0.0012 26.3 1.6 17 1-17 5-21 (130)
39 PF08770 SoxZ: Sulphur oxidati 21.9 1.9E+02 0.0041 22.4 4.5 17 224-240 81-97 (100)
40 PF07148 MalM: Maltose operon 21.4 1.1E+02 0.0024 25.0 3.3 35 224-258 17-54 (135)
41 PRK13254 cytochrome c-type bio 20.7 1.4E+02 0.0029 25.0 3.7 29 224-252 72-101 (148)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.2e-70 Score=489.64 Aligned_cols=229 Identities=65% Similarity=1.244 Sum_probs=216.8
Q ss_pred cCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcC--CCCCccCCCCcEE
Q 024916 29 YGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCAN--DPQWCHAGSPSIF 106 (260)
Q Consensus 29 ~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~--~p~~C~~g~~sv~ 106 (260)
|..++|+.++|||||++++.++++|||||+++..++++.++||+|+++|++|++||+||||+|.. +|+.|.++ ++|+
T Consensus 25 ~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~sV~ 103 (256)
T PLN00193 25 FTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-ASVT 103 (256)
T ss_pred cCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-CeEE
Confidence 66789999999999999988899999999998888899999999999999999999999999952 46689876 5999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEeeeccCCceEEEEccccceEEEEEEeec
Q 024916 107 VTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVA 186 (260)
Q Consensus 107 V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~s~~yw~av~v~n~~ 186 (260)
|+|||+||+++.+|+.|++||++++.|||||.+||.+||....|+++|+||||+|+++|+|+|++++++||++|+|.|++
T Consensus 104 Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~ 183 (256)
T PLN00193 104 ITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVG 183 (256)
T ss_pred EEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeEEEEEecCCceeecccCcCCeEEEcCCCCCcceEEEEEecCCCEEEEccccCCCCCCCcEEecc-ce
Q 024916 187 GAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGK-NF 258 (260)
Q Consensus 187 G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~l~~~p~~vRiT~~~G~~v~~~~vip~~w~~G~~y~~~-q~ 258 (260)
|+++|++||||+++++|++|+|+||++|+.+.+|.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus 184 G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 184 GAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred CCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 9999999999998778999999999999998888888999999999999999999999999999999996 87
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=4.5e-70 Score=485.83 Aligned_cols=232 Identities=73% Similarity=1.326 Sum_probs=217.9
Q ss_pred ccCcccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcCCCCCccCCCC
Q 024916 24 RIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSP 103 (260)
Q Consensus 24 ~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g~~ 103 (260)
+.+..+ .++|..++|||||++++.++++|||||+++..++++.++||+|+++|++|++||+||||+|.+.+..|.++
T Consensus 16 ~~~~~~-~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g-- 92 (247)
T PLN00050 16 KIVEGY-GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG-- 92 (247)
T ss_pred eecccc-CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC--
Confidence 344445 37899999999999999899999999999888889999999999999999999999999998766679876
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEeeeccCCceEEEEccccceEEEEEE
Q 024916 104 SIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLIT 183 (260)
Q Consensus 104 sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~s~~yw~av~v~ 183 (260)
+|+|+|||+||+++..|+.+++||++++.|||||.+||.+||....|+|+|+||||+|+++|+|+|++++++||++|+|.
T Consensus 93 sV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~ 172 (247)
T PLN00050 93 SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLIT 172 (247)
T ss_pred cEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEE
Confidence 89999999999999889999999998899999999999999999999999999999999999999999988899999999
Q ss_pred eecCccceeEEEEEecCCceeecccCcCCeEEEcCCCCCcceEEEEEecCCCEEEEccccCCCCCCCcEEeccce
Q 024916 184 NVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNF 258 (260)
Q Consensus 184 n~~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~l~~~p~~vRiT~~~G~~v~~~~vip~~w~~G~~y~~~q~ 258 (260)
|++|+++|++|+|++++++|++|+|+||++|+.+..|.++||+||||+.+|+++++.||||++|++|++|+++||
T Consensus 173 nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 173 NVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 999999999999999877899999999999999887887899999999999999999999999999999999887
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=4.9e-63 Score=440.33 Aligned_cols=225 Identities=27% Similarity=0.609 Sum_probs=196.3
Q ss_pred HHHHHHHHHhhhcccccCcccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEE
Q 024916 9 CIVTFVTFSSLSVDARIPGVYGGEAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFE 88 (260)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~e 88 (260)
.+|+|++|.+|+..+. .++|++++|||||++++.|+++|||||+++..+.++.++||++ ++|++|++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~------~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~ 78 (247)
T PLN03023 6 YCCFLCVIVLLPLLCK------SQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQ 78 (247)
T ss_pred hHHHHHHHHHhhhhhh------cCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEE
Confidence 3455555555555322 2569999999999999999999999999987777888999998 99999999999999
Q ss_pred EEEcCCCCCccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc-------cCCeeEEEEEEeee
Q 024916 89 IKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEY-------RAGIVPVSYRRVPC 161 (260)
Q Consensus 89 V~c~~~p~~C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~-------~~G~v~i~~r~V~C 161 (260)
|+|.+ |..|.++ +|+|+|||.||. ++.|||||.+||.+||.+ ..|+|+|+||||+|
T Consensus 79 irC~~-~~~C~~~--~v~V~iTd~~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC 141 (247)
T PLN03023 79 VRCKA-PNLCSDD--GVNVVVTDYGEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPC 141 (247)
T ss_pred eecCC-CCccCCC--CeEEEEEeCCCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEec
Confidence 99976 6689876 899999999985 468999999999999984 57999999999999
Q ss_pred ccCC-ceEEEEc--c-ccceEEEEEEeecCccceeEEEEEecC-CceeecccCcCCeEEEcCCCCCcceEEEE--EecCC
Q 024916 162 RKRG-GIRFTIN--G-FRYFNLVLITNVAGAGDIVKASVKGSR-TGWMSLSRNWGQNWQSNSVLVGQSLSFRV--TGSDR 234 (260)
Q Consensus 162 ~~~g-~i~~~v~--s-~~yw~av~v~n~~G~~~I~sVei~~~g-~~W~~m~r~~g~~W~~~~~l~~~p~~vRi--T~~~G 234 (260)
.++| +|+|+|+ + ++||++|+|.|++|+++|++||||+++ .+|++|+|+||++|+.+.+|++ ||+||+ |..+|
T Consensus 142 ~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g 220 (247)
T PLN03023 142 RYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAG 220 (247)
T ss_pred ccCCCceEEEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCC
Confidence 9999 9999998 4 388999999999999999999999965 6899999999999999888988 555555 45577
Q ss_pred CE-EEEccccCCCCCCCcEEecc-ce
Q 024916 235 RT-STSWNIVPANWQFGQTFTGK-NF 258 (260)
Q Consensus 235 ~~-v~~~~vip~~w~~G~~y~~~-q~ 258 (260)
++ |+++||||++|++|++|+++ ||
T Consensus 221 ~~~vva~nViPa~Wk~G~TY~s~vq~ 246 (247)
T PLN03023 221 QTWVQAKNVIPSDWKAGVAYDSNIQL 246 (247)
T ss_pred cEEEEECceeCCCCCCCCEEeccccc
Confidence 65 89999999999999999986 87
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-27 Score=199.92 Aligned_cols=194 Identities=22% Similarity=0.350 Sum_probs=160.4
Q ss_pred CCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCC----CCCcceEEEEEcCCCCCccCCCCcEEE
Q 024916 32 EAWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNG----LSCGACFEIKCANDPQWCHAGSPSIFV 107 (260)
Q Consensus 32 ~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~eV~c~~~p~~C~~g~~sv~V 107 (260)
.+-++|.|||-+... ++||=-.. +.+.+..+.|+|+++-+-| +.-|+.++|.+ |+ | +.+|
T Consensus 28 d~~f~G~ATyTgsGY----sGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---PK----G--~TTV 91 (232)
T COG4305 28 DDLFEGYATYTGSGY----SGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---PK----G--KTTV 91 (232)
T ss_pred ccccceeEEEecccc----cCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC---CC----C--ceEE
Confidence 466889999977543 36776443 3344556999999888754 68999999998 54 4 7889
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEeeeccCCceEEEEc--cccceEEEEEEee
Q 024916 108 TATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKRGGIRFTIN--GFRYFNLVLITNV 185 (260)
Q Consensus 108 ~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~--s~~yw~av~v~n~ 185 (260)
.|||+-|++ ..+.||||+.||.+|.++.+|+|+|+||.|+-|.+||+.+++| |+.||.++||+|+
T Consensus 92 YVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH 158 (232)
T COG4305 92 YVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNH 158 (232)
T ss_pred EEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeecc
Confidence 999999983 4689999999999999999999999999999999999999999 6899999999999
Q ss_pred cCccceeEEEEEecCCceeecccCcCCeEEEcCCCCCcceEEEEEecCCCEEEEc-cccCCCCCCCcEEe--cc-cee
Q 024916 186 AGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSW-NIVPANWQFGQTFT--GK-NFR 259 (260)
Q Consensus 186 ~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~l~~~p~~vRiT~~~G~~v~~~-~vip~~w~~G~~y~--~~-q~~ 259 (260)
. .+|.++|+.+. +.|+.|.+.+||+|.-.+ |...|+.+|+||+.|++++.. -.+|..-+. +.|+ +. ||+
T Consensus 159 ~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asS-KaY~V~G~VQFs 231 (232)
T COG4305 159 K--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASS-KAYTVPGHVQFS 231 (232)
T ss_pred c--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccC-CceeecceeecC
Confidence 7 89999999987 579999999999998544 665699999999999999865 355554443 4555 44 886
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.94 E-value=1.3e-26 Score=187.81 Aligned_cols=100 Identities=36% Similarity=0.698 Sum_probs=84.4
Q ss_pred eEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcCC----CCCccCCCCcEEEEEe
Q 024916 35 QSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCAND----PQWCHAGSPSIFVTAT 110 (260)
Q Consensus 35 ~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~----p~~C~~g~~sv~V~Vt 110 (260)
..|+||||++++ .||| |++ .+++.++||+++++|++|..||+||||+|.+. +..|.. ++|+|+|+
T Consensus 22 ~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~g--ksV~V~Vt 90 (125)
T PLN03024 22 TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTG--KSVTVKIV 90 (125)
T ss_pred cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccC--CeEEEEEE
Confidence 359999999754 4899 544 34678999999999999999999999999652 246864 49999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEE
Q 024916 111 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRR 158 (260)
Q Consensus 111 D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~ 158 (260)
|+||.. |. .|||||++||.+||+++.|+++|+|.+
T Consensus 91 D~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 91 DHCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cCCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 999952 63 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=2e-27 Score=181.43 Aligned_cols=87 Identities=72% Similarity=1.397 Sum_probs=81.2
Q ss_pred EEEechhccCCCCCCcceEEEEEcCCCCCccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhccc
Q 024916 69 TAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYR 148 (260)
Q Consensus 69 ~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~ 148 (260)
+||+|+++|++|++||+||||+|.++|..|.++ ++|+|+|||+||+.+..|+.+++||++++.|||||.+||.+||+++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~-~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPG-GSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCC-CeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 489999999999999999999997667789876 5999999999999888889999999988999999999999999999
Q ss_pred CCeeEEEE
Q 024916 149 AGIVPVSY 156 (260)
Q Consensus 149 ~G~v~i~~ 156 (260)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.88 E-value=1.5e-22 Score=162.30 Aligned_cols=87 Identities=16% Similarity=0.300 Sum_probs=78.4
Q ss_pred ceEEEEc--cccceEEEEEEeecCccceeEEEEEecC-Ccee-ecccCcCCeEEEcC--CCCCcceEEEEEecCCCEEEE
Q 024916 166 GIRFTIN--GFRYFNLVLITNVAGAGDIVKASVKGSR-TGWM-SLSRNWGQNWQSNS--VLVGQSLSFRVTGSDRRTSTS 239 (260)
Q Consensus 166 ~i~~~v~--s~~yw~av~v~n~~G~~~I~sVei~~~g-~~W~-~m~r~~g~~W~~~~--~l~~~p~~vRiT~~~G~~v~~ 239 (260)
+|+|+|+ +|++||++++ | ++|.+|||++++ ..|+ +|+|+||+.|++++ +|++ ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 9999999 5799997765 3 369999999986 5899 99999999999865 6787 9999999999999999
Q ss_pred ccccCCCCCCCcEEecc-ce
Q 024916 240 WNIVPANWQFGQTFTGK-NF 258 (260)
Q Consensus 240 ~~vip~~w~~G~~y~~~-q~ 258 (260)
+||||++|++|++|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999987 86
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=5e-22 Score=150.16 Aligned_cols=77 Identities=42% Similarity=0.767 Sum_probs=63.9
Q ss_pred eEEEEc--cccceEEEEEEeecCccceeEEEEEecC-CceeecccCcCCeEEEc-CCCCCcceEEEEEecC-CCEEEEcc
Q 024916 167 IRFTIN--GFRYFNLVLITNVAGAGDIVKASVKGSR-TGWMSLSRNWGQNWQSN-SVLVGQSLSFRVTGSD-RRTSTSWN 241 (260)
Q Consensus 167 i~~~v~--s~~yw~av~v~n~~G~~~I~sVei~~~g-~~W~~m~r~~g~~W~~~-~~l~~~p~~vRiT~~~-G~~v~~~~ 241 (260)
|+|+|+ |++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689999 5799999999999999999999999887 46999999999999998 45555 9999999966 99999999
Q ss_pred ccC
Q 024916 242 IVP 244 (260)
Q Consensus 242 vip 244 (260)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.78 E-value=2.1e-19 Score=134.07 Aligned_cols=75 Identities=37% Similarity=0.827 Sum_probs=61.6
Q ss_pred EEEechhccCCCCCCcceEEEEEcC-CCCC--ccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhh
Q 024916 69 TAALSTALFNNGLSCGACFEIKCAN-DPQW--CHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMA 145 (260)
Q Consensus 69 ~aA~s~~~~~~g~~CG~C~eV~c~~-~p~~--C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 145 (260)
+||++..+|++|.+||+||+++|.. .... |..+.++|+|+|+|+||+ | +..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~--~~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------C--PPNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------S--SSSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------C--cCCEEEeCHHHHHHhC
Confidence 5899999999999999999999932 1122 765226999999999998 7 5699999999999999
Q ss_pred cccCCeeEEEE
Q 024916 146 EYRAGIVPVSY 156 (260)
Q Consensus 146 ~~~~G~v~i~~ 156 (260)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.97 E-value=5e-10 Score=88.60 Aligned_cols=60 Identities=25% Similarity=0.515 Sum_probs=44.3
Q ss_pred CCCCCcceEEEEEcCCCCCccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc----ccCCeeEE
Q 024916 79 NGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAE----YRAGIVPV 154 (260)
Q Consensus 79 ~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~v~i 154 (260)
....||+|++|+.+. .+++++|+|+|+|+. ++|||.+.+|.+|-. ...|.+.|
T Consensus 56 gq~~CGkClrVTNt~-------tga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V 112 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA-------TGAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIV 112 (119)
T ss_dssp SGGGTT-EEEEE-TT-------T--EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEE
T ss_pred CcccccceEEEEecC-------CCcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEE
Confidence 447899999999864 237999999999986 489999999999963 35799999
Q ss_pred EEEEeee
Q 024916 155 SYRRVPC 161 (260)
Q Consensus 155 ~~r~V~C 161 (260)
.|++|+|
T Consensus 113 ~y~fV~C 119 (119)
T PF00967_consen 113 DYEFVDC 119 (119)
T ss_dssp EEEEE--
T ss_pred EEEEEcC
Confidence 9999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.02 E-value=4.1e-05 Score=61.75 Aligned_cols=65 Identities=23% Similarity=0.483 Sum_probs=45.9
Q ss_pred EEEech-hccCCCCCCcceEEEEEcCCCCCccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc
Q 024916 69 TAALST-ALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEY 147 (260)
Q Consensus 69 ~aA~s~-~~~~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~ 147 (260)
+.+... +-|+ ...||.|+|++-. + ++|.|..+|.-+ ..|+|+.+||++|.+-
T Consensus 45 IGg~~~V~gWn-S~~CGtC~~lty~--------g-~si~vlaID~a~-----------------~gfnis~~A~n~LT~g 97 (119)
T PF07249_consen 45 IGGAPAVAGWN-SPNCGTCWKLTYN--------G-RSIYVLAIDHAG-----------------GGFNISLDAMNDLTNG 97 (119)
T ss_dssp EEEETT--STT--TTTT-EEEEEET--------T-EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS
T ss_pred eccccccccCC-CCCCCCeEEEEEC--------C-eEEEEEEEecCC-----------------CcccchHHHHHHhcCC
Confidence 555554 4564 5789999999982 3 699999999743 3599999999999862
Q ss_pred ---cCCeeEEEEEEee
Q 024916 148 ---RAGIVPVSYRRVP 160 (260)
Q Consensus 148 ---~~G~v~i~~r~V~ 160 (260)
..|+|+++|++|+
T Consensus 98 ~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 98 QAVELGRVDATYTQVD 113 (119)
T ss_dssp -CCCC-EEE-EEEEE-
T ss_pred cccceeEEEEEEEEcC
Confidence 5699999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.94 E-value=0.00011 Score=64.41 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=69.5
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcCCCCCccCCCCcEEEEEecCCCCC
Q 024916 37 AHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPN 116 (260)
Q Consensus 37 g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~~ 116 (260)
|.|+|||..-.. ..-|.|-.. . ...|+||-.+ .-.|...+|+...+ +++|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~G--~~TAnGe~y--~--~~~~tAAHkt------LPlgT~V~VtNl~n-------grsviVrVnDRGPf~ 61 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGEVY--N--MKALTAAHKT------LPFNTYVKVTNLHN-------NRSVIVRINDRGPFS 61 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCeec--C--CCcccccccc------CCCCCEEEEEECCC-------CCEEEEEEeCCCCCC
Confidence 679999864210 123333221 1 1234555443 47899999998653 379999999999972
Q ss_pred CCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEeeeccC
Q 024916 117 FAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPCRKR 164 (260)
Q Consensus 117 ~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~ 164 (260)
+.--+|||+.|+.+|.-...|+.+|+.+.+.....
T Consensus 62 -------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 34689999999999999999999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.00028 Score=62.86 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCcceEEEEEcCCCCCccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEeee
Q 024916 82 SCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVPC 161 (260)
Q Consensus 82 ~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C 161 (260)
-=|.-.+|+..++ +++|+|+|.|++|- . ..-.+|||..|+++|+-.+.|+.+|+.+++.+
T Consensus 118 P~~t~v~VtNl~N-------grsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~ 177 (233)
T COG0797 118 PLPTYVRVTNLDN-------GRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGV 177 (233)
T ss_pred CCCCEEEEEEccC-------CcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEecc
Confidence 3466788988763 47999999999995 2 34689999999999999999999999999997
Q ss_pred c
Q 024916 162 R 162 (260)
Q Consensus 162 ~ 162 (260)
.
T Consensus 178 ~ 178 (233)
T COG0797 178 A 178 (233)
T ss_pred c
Confidence 6
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.27 E-value=0.0035 Score=59.31 Aligned_cols=93 Identities=20% Similarity=0.177 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCcceEEEEEcCCCCCccCCCCcEEEEEecCCCC
Q 024916 36 SAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPP 115 (260)
Q Consensus 36 ~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~ 115 (260)
.|.|+|||..-... .-|.|- .+. ...|+||-.+ .--|...+|+..++ | ++|+|+|.|++|-
T Consensus 80 ~G~ASwYg~~f~G~--~TA~Ge--~~~--~~~~tAAH~t------LPlps~vrVtNl~n------g-rsvvVrVnDRGP~ 140 (361)
T PRK10672 80 AGLAAIYDAEAGSN--LTASGE--RFD--PNALTAAHPT------LPIPSYVRVTNLAN------G-RMIVVRINDRGPY 140 (361)
T ss_pred EEEEEEeCCccCCC--cCcCce--eec--CCcCeeeccC------CCCCCEEEEEECCC------C-cEEEEEEeCCCCC
Confidence 58888998643200 112211 111 1234555443 36788999998763 4 7999999999997
Q ss_pred CCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeeEEEEEEee
Q 024916 116 NFAQPSDNGGWCNPPRPHFDLAMPMFLKMAEYRAGIVPVSYRRVP 160 (260)
Q Consensus 116 ~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~ 160 (260)
. +.--+|||..|+.+|.-...+.+.|+.-.|.
T Consensus 141 ~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 141 G-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred C-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 2 3468999999999998777777777777763
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.42 E-value=0.077 Score=46.44 Aligned_cols=55 Identities=31% Similarity=0.401 Sum_probs=32.2
Q ss_pred EEEechhccCCCCCCcceEEEEEcCCCCCccCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHH
Q 024916 69 TAALSTALFNNGLSCGACFEIKCANDPQWCHAGSPSIFVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPM 140 (260)
Q Consensus 69 ~aA~s~~~~~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~A 140 (260)
+||.+-.-..+...|++|||++-++.+- +| |+.+|++++.=-. -..+||||.-+.
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l---~G-KkmiVQ~tNtG~d-------------lg~n~FDl~iPG 124 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL---KG-KKMIVQVTNTGGD-------------LGSNQFDLAIPG 124 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT---TT--EEEEEEEEE-TT-------------TTTTEEEEE-TT
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc---CC-CEeEEEecccCCC-------------CCCCeEEEEeCC
Confidence 5666533223346899999999986432 24 7999999986322 135899997543
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=70.77 E-value=10 Score=29.24 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=34.8
Q ss_pred eeEEEEEecCCcee----ecccCcCCeEEEcCC---------CCCcceEEEEEecCCCEEE
Q 024916 191 IVKASVKGSRTGWM----SLSRNWGQNWQSNSV---------LVGQSLSFRVTGSDRRTST 238 (260)
Q Consensus 191 I~sVei~~~g~~W~----~m~r~~g~~W~~~~~---------l~~~p~~vRiT~~~G~~v~ 238 (260)
-++|+|.++-..|. +|.|...-.|++.-+ ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45777776655675 488877779987432 2567999999998888764
No 17
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.74 E-value=14 Score=34.45 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=50.9
Q ss_pred EEEEEeeeccCCceEEEEc-cccceEEEEEEeecCccceeEEEEEecCCceeecccCcCCeEEEcCCCCCcceEEEEEe-
Q 024916 154 VSYRRVPCRKRGGIRFTIN-GFRYFNLVLITNVAGAGDIVKASVKGSRTGWMSLSRNWGQNWQSNSVLVGQSLSFRVTG- 231 (260)
Q Consensus 154 i~~r~V~C~~~g~i~~~v~-s~~yw~av~v~n~~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~l~~~p~~vRiT~- 231 (260)
+.|..++ .++.+.|.+. +++.+ ...+|.++|.+.+|-... | .++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan~---------------------G-~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPANI---------------------G-ELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEccccc---------------------c-cEEEEEEEE
Confidence 5677665 4467888887 56665 223444566666654331 2 78899998
Q ss_pred cCCCEEEEccccC--CCCCCCcEEecccee
Q 024916 232 SDRRTSTSWNIVP--ANWQFGQTFTGKNFR 259 (260)
Q Consensus 232 ~~G~~v~~~~vip--~~w~~G~~y~~~q~~ 259 (260)
..++.|-+.+|+- ++|++-++|.+..|.
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F~ 128 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYFT 128 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccceE
Confidence 4455888887554 888888888887765
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=64.59 E-value=12 Score=30.42 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=27.3
Q ss_pred ceeEEEEEecC-CceeecccCcC-----------C--eEEEcCC--C-CCc-ceEEEEEecCCCE
Q 024916 190 DIVKASVKGSR-TGWMSLSRNWG-----------Q--NWQSNSV--L-VGQ-SLSFRVTGSDRRT 236 (260)
Q Consensus 190 ~I~sVei~~~g-~~W~~m~r~~g-----------~--~W~~~~~--l-~~~-p~~vRiT~~~G~~ 236 (260)
+|.+|||..++ .+|++.....- + .|++.-. . .+. -+.+|-||.+|.+
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 89999999887 46987765321 1 3655321 1 232 5666777777753
No 19
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=58.48 E-value=20 Score=33.47 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=31.3
Q ss_pred cceeEEEEEecCC-ceeecccCcCC-------eEEEcCCC-CCc-ceEEEEEecCCCE
Q 024916 189 GDIVKASVKGSRT-GWMSLSRNWGQ-------NWQSNSVL-VGQ-SLSFRVTGSDRRT 236 (260)
Q Consensus 189 ~~I~sVei~~~g~-~W~~m~r~~g~-------~W~~~~~l-~~~-p~~vRiT~~~G~~ 236 (260)
..|++|||+.+++ +|++..-.... .|++.-.+ .+. -+.+|.+|.+|++
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 5799999998875 89987654221 45554222 222 5677778877754
No 20
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=57.90 E-value=6.1 Score=33.24 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=13.2
Q ss_pred CcchhhHHHHHHHHHHHh
Q 024916 1 MGVAVGIICIVTFVTFSS 18 (260)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (260)
++|+||+.+||+|+++.+
T Consensus 10 v~i~igi~Ll~lLl~cgi 27 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGI 27 (158)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 368888888887766654
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=48.52 E-value=1.5e+02 Score=24.15 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=40.9
Q ss_pred CceEEEEc------cccceEEEEEEeecCccceeEEEEEec----C-------CceeecccCcC--CeEEEcCCCCCcce
Q 024916 165 GGIRFTIN------GFRYFNLVLITNVAGAGDIVKASVKGS----R-------TGWMSLSRNWG--QNWQSNSVLVGQSL 225 (260)
Q Consensus 165 g~i~~~v~------s~~yw~av~v~n~~G~~~I~sVei~~~----g-------~~W~~m~r~~g--~~W~~~~~l~~~p~ 225 (260)
..+.+.+. .-+||.-+.+.|.+| ...++|+|.+. + .+.-.+.+..- ..+-....|...-+
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L 112 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQL 112 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeE
Confidence 36666665 246999999999987 68999999864 1 12233333221 13333444444467
Q ss_pred EEEEEec
Q 024916 226 SFRVTGS 232 (260)
Q Consensus 226 ~vRiT~~ 232 (260)
.||+.+.
T Consensus 113 ~irv~gY 119 (122)
T TIGR02588 113 RLRVAGY 119 (122)
T ss_pred EEEEEec
Confidence 8887763
No 22
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=46.61 E-value=7.5 Score=28.05 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=2.0
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccCCCCc
Q 024916 2 GVAVGIICIVTFVTFSSLSVDARIPGVYGGEAW 34 (260)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (260)
|++||+++.++|++|..-=...+-.++|.-.+-
T Consensus 17 G~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e~ 49 (64)
T PF01034_consen 17 GGVVGLLFAILLILFLIYRMRKKDEGSYDLDEP 49 (64)
T ss_dssp --------------------S------SS--S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCC
Confidence 667777777777776655555555555554333
No 23
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=45.45 E-value=13 Score=29.24 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=13.0
Q ss_pred CcchhhHHHHHHHHHHH
Q 024916 1 MGVAVGIICIVTFVTFS 17 (260)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (260)
+||+|+++++-+||++.
T Consensus 21 VGVv~~al~~SlLIala 37 (102)
T PF15176_consen 21 VGVVVTALVTSLLIALA 37 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58888888887777665
No 24
>PLN00177 sulfite oxidase; Provisional
Probab=42.63 E-value=83 Score=30.44 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=19.5
Q ss_pred EEeecCccceeEEEEEecCC-ceeeccc
Q 024916 182 ITNVAGAGDIVKASVKGSRT-GWMSLSR 208 (260)
Q Consensus 182 v~n~~G~~~I~sVei~~~g~-~W~~m~r 208 (260)
+...+|...|++|||..+++ +|+....
T Consensus 289 ~Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 289 YALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EEECCCCccEEEEEEEcCCCCCceeeee
Confidence 44544434799999998874 7997754
No 25
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.52 E-value=25 Score=28.56 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHHHhhhc
Q 024916 2 GVAVGIICIVTFVTFSSLSV 21 (260)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (260)
||+.|+|++.|||.|+..=.
T Consensus 72 gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877533
No 26
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=36.36 E-value=25 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.8
Q ss_pred CcchhhHHHHHHHHHHHhhhccccc
Q 024916 1 MGVAVGIICIVTFVTFSSLSVDARI 25 (260)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (260)
.|+|||+-+|.++.+++-...-.+-
T Consensus 6 ~~~~IGiTvLmLlMvisGgali~r~ 30 (78)
T PHA02702 6 LGVAVGATILMLLIVVTGGATIARR 30 (78)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHhh
Confidence 4899999999999998866655444
No 27
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=35.40 E-value=96 Score=29.64 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=32.5
Q ss_pred EEeecCccceeEEEEEecCC-ceeecccCc--C-------Ce---EEEcCCC-CC--cceEEEEEecCCCE
Q 024916 182 ITNVAGAGDIVKASVKGSRT-GWMSLSRNW--G-------QN---WQSNSVL-VG--QSLSFRVTGSDRRT 236 (260)
Q Consensus 182 v~n~~G~~~I~sVei~~~g~-~W~~m~r~~--g-------~~---W~~~~~l-~~--~p~~vRiT~~~G~~ 236 (260)
+...+|...|++|||..+++ +|+...-.. + -. |.+.-.+ .+ --+.+|-||..|++
T Consensus 269 ~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 269 YAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 44444445899999998874 799876532 1 23 4433211 21 14566777777754
No 28
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=32.96 E-value=14 Score=29.80 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHhhhccccc
Q 024916 2 GVAVGIICIVTFVTFSSLSVDARI 25 (260)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (260)
-|+.||.|||+|++...|.+--++
T Consensus 8 av~LGILCllLLvtv~vL~t~ifQ 31 (119)
T PF08391_consen 8 AVALGILCLLLLVTVAVLGTMIFQ 31 (119)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999887555
No 29
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=32.08 E-value=26 Score=22.59 Aligned_cols=11 Identities=45% Similarity=0.915 Sum_probs=9.3
Q ss_pred cccCCCCCCCc
Q 024916 241 NIVPANWQFGQ 251 (260)
Q Consensus 241 ~vip~~w~~G~ 251 (260)
-+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 37899999986
No 30
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=30.61 E-value=1.9e+02 Score=21.43 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=20.7
Q ss_pred eecccCc-CCeEEEcC--CCCCcceEEEEEecCCCEE
Q 024916 204 MSLSRNW-GQNWQSNS--VLVGQSLSFRVTGSDRRTS 237 (260)
Q Consensus 204 ~~m~r~~-g~~W~~~~--~l~~~p~~vRiT~~~G~~v 237 (260)
.+|.|.. ...|...- ...+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677755 56787532 2223468999987555544
No 31
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=30.27 E-value=1.1e+02 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=29.8
Q ss_pred CccceeEEEEEecCC-ceeecccCcC---C---eEEEcCCC-CC-cceEEEEEecCCCE
Q 024916 187 GAGDIVKASVKGSRT-GWMSLSRNWG---Q---NWQSNSVL-VG-QSLSFRVTGSDRRT 236 (260)
Q Consensus 187 G~~~I~sVei~~~g~-~W~~m~r~~g---~---~W~~~~~l-~~-~p~~vRiT~~~G~~ 236 (260)
|.+.|.+|||+.+++ +|+......- . .|++.-.+ .+ --+-.|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 345799999998874 7997765311 1 23332112 22 15666777877753
No 32
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.24 E-value=1.3e+02 Score=28.72 Aligned_cols=50 Identities=24% Similarity=0.485 Sum_probs=30.7
Q ss_pred CccceeEEEEEecC-CceeecccC--cCC----eEEEcC-CC-CCc-ceEEEEEecCCCE
Q 024916 187 GAGDIVKASVKGSR-TGWMSLSRN--WGQ----NWQSNS-VL-VGQ-SLSFRVTGSDRRT 236 (260)
Q Consensus 187 G~~~I~sVei~~~g-~~W~~m~r~--~g~----~W~~~~-~l-~~~-p~~vRiT~~~G~~ 236 (260)
|...|++|||..++ .+|++..-. .+. .|++.- .. .+. -+.+|-||.+|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 33689999999887 479876532 222 355532 11 231 5666777877753
No 33
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.91 E-value=1.3e+02 Score=21.79 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=28.1
Q ss_pred eEEEEEecCCce--eecccCcCCeEEEcCCCCCcceEEEEEecCCCEE
Q 024916 192 VKASVKGSRTGW--MSLSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTS 237 (260)
Q Consensus 192 ~sVei~~~g~~W--~~m~r~~g~~W~~~~~l~~~p~~vRiT~~~G~~v 237 (260)
++|+|.++=..| .+|.|.....|+..-.+..+.+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 788888764567 468887656788754443224555554 356555
No 34
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=25.33 E-value=97 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=18.1
Q ss_pred cceEEEEEecCCC-EEEEccccCCCCCCCcE
Q 024916 223 QSLSFRVTGSDRR-TSTSWNIVPANWQFGQT 252 (260)
Q Consensus 223 ~p~~vRiT~~~G~-~v~~~~vip~~w~~G~~ 252 (260)
..++|.|||...+ .|++..+.|.+++.|..
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 4788999987543 66677899999988764
No 35
>PRK10301 hypothetical protein; Provisional
Probab=24.00 E-value=1.1e+02 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=22.2
Q ss_pred cccCCeeEEEEEEeeec---cCCceEEEEc
Q 024916 146 EYRAGIVPVSYRRVPCR---KRGGIRFTIN 172 (260)
Q Consensus 146 ~~~~G~v~i~~r~V~C~---~~g~i~~~v~ 172 (260)
.+..|.+.|+||-|+=+ ..|.+.|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 35689999999999987 3678888875
No 36
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=23.79 E-value=2.8e+02 Score=23.08 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=26.8
Q ss_pred CCeeEEEEEEeeeccCCceEEEEc--c--ccceEEEEEEeecCccceeEEEEE
Q 024916 149 AGIVPVSYRRVPCRKRGGIRFTIN--G--FRYFNLVLITNVAGAGDIVKASVK 197 (260)
Q Consensus 149 ~G~v~i~~r~V~C~~~g~i~~~v~--s--~~yw~av~v~n~~G~~~I~sVei~ 197 (260)
-|-++|+-|+-| --++..+.+= + +|+|+.|++. .+| .++.-|...
T Consensus 57 gGffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~~-~gG-~~~a~v~~~ 105 (144)
T PRK13701 57 GGFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLVN-AGG-EPFAVVQVQ 105 (144)
T ss_pred cCeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEEc-CCC-cEEEEEEec
Confidence 356666666666 2235554444 2 8999988884 555 355544444
No 37
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.19 E-value=97 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred ceEEEEEecCCC-EEEEccccCCCCCCCc
Q 024916 224 SLSFRVTGSDRR-TSTSWNIVPANWQFGQ 251 (260)
Q Consensus 224 p~~vRiT~~~G~-~v~~~~vip~~w~~G~ 251 (260)
.++|+|||...+ .|.+..++|..|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 578888875443 6667789999888875
No 38
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.33 E-value=55 Score=26.28 Aligned_cols=17 Identities=12% Similarity=0.379 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHHHHH
Q 024916 1 MGVAVGIICIVTFVTFS 17 (260)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (260)
++|+|.+|+|+++++++
T Consensus 5 ~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHHHHHH
No 39
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=21.86 E-value=1.9e+02 Score=22.36 Aligned_cols=17 Identities=12% Similarity=0.093 Sum_probs=12.5
Q ss_pred ceEEEEEecCCCEEEEc
Q 024916 224 SLSFRVTGSDRRTSTSW 240 (260)
Q Consensus 224 p~~vRiT~~~G~~v~~~ 240 (260)
+++++.+|++|+...+.
T Consensus 81 ~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 81 TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 78888888888876654
No 40
>PF07148 MalM: Maltose operon periplasmic protein precursor (MalM); InterPro: IPR010794 This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown [].; GO: 0008643 carbohydrate transport, 0042597 periplasmic space
Probab=21.35 E-value=1.1e+02 Score=25.04 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceEEEEEe-cCCCEEEEccccC--CCCCCCcEEeccce
Q 024916 224 SLSFRVTG-SDRRTSTSWNIVP--ANWQFGQTFTGKNF 258 (260)
Q Consensus 224 p~~vRiT~-~~G~~v~~~~vip--~~w~~G~~y~~~q~ 258 (260)
+++|+|+| ...+.|-+.+|+- ++|++=..|+..+|
T Consensus 17 ~l~i~l~S~v~~~~vfaP~vliLD~~~~~~~~~~~~~F 54 (135)
T PF07148_consen 17 SLSITLSSYVKDKSVFAPNVLILDENFQPVRTYPSSDF 54 (135)
T ss_pred cEEEEEEEEEcCCcEEeeeEEEECCCCCEEEEcChHHe
Confidence 67777776 3366666666443 55666555555444
No 41
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.68 E-value=1.4e+02 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=20.8
Q ss_pred ceEEEEEecCCC-EEEEccccCCCCCCCcE
Q 024916 224 SLSFRVTGSDRR-TSTSWNIVPANWQFGQT 252 (260)
Q Consensus 224 p~~vRiT~~~G~-~v~~~~vip~~w~~G~~ 252 (260)
.++|+|||...+ .|.+..++|..++.|.-
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~ 101 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQG 101 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCCE
Confidence 678888886432 55567889988887753
Done!