BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024917
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 67 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN 126
S+ + A ++ + ++I+ I D+PKPGI+F+D+T+LL D KA+ +IDL VERYK+
Sbjct: 4 GSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAG 63
Query: 127 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAV 186
I+ V G EARGF+FG P+AL +G FVP+RKP KLP E ISE Y LEYG D +E+HV A+
Sbjct: 64 ITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAI 123
Query: 187 QAGERALIVDDLVATGGTLSAAIRLL----GSFQNHIFIL 222
+ G++ L+VDDL+ATGGT+ A ++L+ G + FI+
Sbjct: 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 163
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 75 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVA 131
D + + IR PDFP PG++F+DI+ +L D +FR I L K + I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 132 GIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 191
G+++RGF+FGP +A +G V +RK KLPG + YSLEYGK +E+ A++ G+R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 192 ALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 229
++VDDL+ATGGT++AA LLG Q +L C+ ++
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAE--VLECVSLVE 158
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 84 AIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAGIEARGFI 139
A+ P+FP GI+F+D + + F+ ID F E + + I + G+E+RGF+
Sbjct: 13 ALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFL 72
Query: 140 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 199
FGP +ALA+G FVP+RK KLPGE Y EYG D+ E+ A+ AG +IVDD++
Sbjct: 73 FGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDII 132
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 78 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARG 137
+A + I+ IPDFP GI F+D++ +L A YKD I+ V GIE+RG
Sbjct: 5 VADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRG 64
Query: 138 FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVD 196
FI G +A ++G FV +RK KLPG+V + +EY K V +E+ + + L+ D
Sbjct: 65 FILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHD 124
Query: 197 DLVATGGTLSAAIRL 211
D++ATGGTL AAI L
Sbjct: 125 DVLATGGTLLAAIEL 139
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 98 FQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPM 155
F D++++ + + D VERY+ + + + G +ARGF+FGP IA+ +G FV M
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 156 RKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRL 211
RK K G +I SE Y EY + +VM + G++ R +++DD++ATGGT + ++L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 212 LGSFQNHIFILICI 225
+ + + ++ I
Sbjct: 162 VEASGAEVVEMVSI 175
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 98 FQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPM 155
F D++++ + + D V+RY+ + + + G +ARGF+FGP IA+ + FV M
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 156 RKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRL 211
RK K G +I SE Y EY + +VM + G++ G R +++DD++ATGGT + ++L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 212 L 212
+
Sbjct: 161 V 161
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 117 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL-PGEVISEEYSLEYG 175
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 176 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 219
+ M + +++ G LI+DD + GGT++ I LL F ++
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANV 226
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 117 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL-PGEVISEEYSLEYG 175
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 176 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 219
+ M + +++ G LI+DD + GGT++ I LL F ++
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANV 226
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 116 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 175
D V YK+ ++ V + G I+ +G K + K K++ +
Sbjct: 143 DAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIEK-KRIDDRTV--------- 192
Query: 176 KDVMEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLL 212
EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 193 ----EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 226
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 116 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 175
D V YK+ ++ V + G I+ +G K + K K++ +
Sbjct: 145 DAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIEK-KRIDDRTV--------- 194
Query: 176 KDVMEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLL 212
EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 195 ----EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 228
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 194 IVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ------MLNACFSS 234
IVDD+++TGGT++ A++LL I C+ LN +S+
Sbjct: 210 IVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYSA 256
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 184 GAVQAGERALIVDDLVATGGTLSAAIRLLGS 214
G+++ GER L + D V GGT + +R LG
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLGE 31
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 182 HVGAVQAGERALIVDDLVATGGTLSAAIRLLG 213
G+++ GER L + D V GGT + +R LG
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLG 59
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 143 PIALAIGAKF-VPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT 201
PIA AI + VP+ P++ ++ + ++E G + G+R +I+DDLV+T
Sbjct: 329 PIASAISNEMNVPLIYPRR-EAKIYGTKAAIE----------GEYKKGDRVVIIDDLVST 377
Query: 202 GGTLSAAIRLLGS 214
G T AI L S
Sbjct: 378 GETKVEAIEKLRS 390
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 40/155 (25%)
Query: 60 STQPQQMASADVKAQDP--RIAGISSAI----RVIPDFPKPGIMFQDITTLLLDTKAFRD 113
+TQ + + +K +DP +GI S I RV +PK RD
Sbjct: 10 ATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKT-----------------RD 52
Query: 114 TIDL-FVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEY 170
I+ FVE K + V+AG G G IA + F +R K G
Sbjct: 53 LIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGA------ 106
Query: 171 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205
G + G V G++ +I++DL++TGG++
Sbjct: 107 ----GNQIE----GRVLKGQKMVIIEDLISTGGSV 133
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 73 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 127
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 366
Query: 128 SVVAGIEARGFIFGPP 143
S V G RG I G P
Sbjct: 367 SSVPG---RGSIEGRP 379
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 73 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 127
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 312 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 368
Query: 128 SVVAGIEARGFIFGPP 143
S V G RG I G P
Sbjct: 369 SSVPG---RGSIEGRP 381
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 184 GAVQAGERALIVDDLVATGGTLSAAIRLL 212
G + G++ ++V+DL++TGG+ + L
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEAL 160
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 184 GAVQAGERALIVDDLVATGGTLSAAI 209
G V G++ +I++DL++TGG++ A+
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAV 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,677,153
Number of Sequences: 62578
Number of extensions: 256831
Number of successful extensions: 800
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 26
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)