Query 024917
Match_columns 260
No_of_seqs 213 out of 2089
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 100.0 6.1E-43 1.3E-47 294.4 16.1 169 74-242 4-182 (183)
2 PLN02293 adenine phosphoribosy 100.0 1.3E-34 2.8E-39 251.8 21.4 157 74-230 10-166 (187)
3 COG0503 Apt Adenine/guanine ph 100.0 5.3E-32 1.1E-36 233.8 19.0 156 76-231 3-158 (179)
4 TIGR01743 purR_Bsub pur operon 100.0 7.2E-30 1.6E-34 232.8 20.4 176 71-252 79-261 (268)
5 PRK09213 pur operon repressor; 100.0 1.1E-29 2.4E-34 232.0 20.0 176 72-253 82-264 (271)
6 PRK02304 adenine phosphoribosy 100.0 3.5E-29 7.5E-34 214.3 20.4 154 77-230 2-155 (175)
7 TIGR01090 apt adenine phosphor 100.0 5E-29 1.1E-33 212.4 17.9 150 81-230 1-150 (169)
8 PRK09219 xanthine phosphoribos 100.0 2.3E-28 5E-33 212.9 20.4 172 75-251 2-188 (189)
9 TIGR01744 XPRTase xanthine pho 100.0 2.9E-28 6.3E-33 212.6 20.7 171 75-250 2-187 (191)
10 PRK12560 adenine phosphoribosy 99.9 6.8E-27 1.5E-31 203.1 17.4 147 79-230 4-155 (187)
11 PRK08558 adenine phosphoribosy 99.9 2.2E-25 4.8E-30 200.4 19.2 148 77-231 68-218 (238)
12 PRK13810 orotate phosphoribosy 99.9 4.8E-25 1E-29 191.8 17.1 125 93-231 40-164 (187)
13 PRK07322 adenine phosphoribosy 99.9 1.2E-23 2.6E-28 181.2 17.6 158 81-239 8-172 (178)
14 PRK13809 orotate phosphoribosy 99.9 7.5E-23 1.6E-27 180.5 17.4 134 97-242 38-179 (206)
15 PRK06031 phosphoribosyltransfe 99.9 3.1E-22 6.7E-27 179.6 16.7 147 79-231 40-196 (233)
16 PRK13811 orotate phosphoribosy 99.9 6.5E-22 1.4E-26 169.4 14.9 128 97-242 30-165 (170)
17 PRK13812 orotate phosphoribosy 99.9 1E-21 2.2E-26 169.3 15.8 119 97-231 31-149 (176)
18 PRK05500 bifunctional orotidin 99.9 8.9E-22 1.9E-26 192.2 16.0 141 88-242 302-454 (477)
19 TIGR00336 pyrE orotate phospho 99.9 2.8E-21 6E-26 165.6 15.4 127 88-230 17-149 (173)
20 PRK02277 orotate phosphoribosy 99.9 1.7E-20 3.7E-25 164.4 17.7 160 75-242 32-197 (200)
21 TIGR01367 pyrE_Therm orotate p 99.9 2.1E-20 4.6E-25 162.5 17.7 128 97-241 27-162 (187)
22 PRK00455 pyrE orotate phosphor 99.9 1.5E-20 3.3E-25 164.4 15.8 133 97-244 33-176 (202)
23 COG0461 PyrE Orotate phosphori 99.8 4.9E-20 1.1E-24 161.9 16.2 143 88-245 18-176 (201)
24 PF00156 Pribosyltran: Phospho 99.8 2E-18 4.3E-23 137.5 12.9 122 103-226 2-125 (125)
25 COG0856 Orotate phosphoribosyl 99.6 3.8E-15 8.2E-20 127.8 13.5 131 91-231 48-183 (203)
26 PRK09177 xanthine-guanine phos 99.6 2.5E-14 5.4E-19 121.1 13.6 119 104-237 8-129 (156)
27 TIGR01203 HGPRTase hypoxanthin 99.6 3.4E-14 7.4E-19 121.2 14.4 126 105-238 2-138 (166)
28 PRK09162 hypoxanthine-guanine 99.6 4.1E-14 8.8E-19 122.3 14.7 127 104-238 15-152 (181)
29 PLN02238 hypoxanthine phosphor 99.5 1.8E-13 3.8E-18 119.3 14.8 119 103-230 9-138 (189)
30 TIGR00201 comF comF family pro 99.5 7.6E-14 1.7E-18 121.0 9.1 119 106-226 56-189 (190)
31 PRK15423 hypoxanthine phosphor 99.5 8.9E-13 1.9E-17 114.0 14.3 126 103-238 6-146 (178)
32 COG1040 ComFC Predicted amidop 99.5 8E-14 1.7E-18 124.6 7.6 122 106-228 89-223 (225)
33 PRK05205 bifunctional pyrimidi 99.5 2.5E-12 5.5E-17 110.4 15.7 129 104-242 5-153 (176)
34 PTZ00149 hypoxanthine phosphor 99.4 3.8E-12 8.3E-17 115.0 14.8 139 100-238 52-204 (241)
35 PRK08525 amidophosphoribosyltr 99.4 9.7E-13 2.1E-17 128.1 11.8 115 109-225 259-376 (445)
36 PTZ00271 hypoxanthine-guanine 99.4 5.3E-12 1.1E-16 112.1 15.4 126 104-238 26-172 (211)
37 PRK11595 DNA utilization prote 99.4 1.2E-12 2.7E-17 116.6 10.7 120 106-227 85-225 (227)
38 PRK00934 ribose-phosphate pyro 99.4 2.7E-12 5.9E-17 118.3 11.9 98 116-227 143-242 (285)
39 PRK07199 phosphoribosylpyropho 99.4 4.3E-12 9.3E-17 117.9 12.7 91 126-228 160-250 (301)
40 PRK06781 amidophosphoribosyltr 99.4 2.3E-12 4.9E-17 126.4 9.9 113 109-224 267-383 (471)
41 PRK09246 amidophosphoribosyltr 99.3 3.2E-12 7E-17 126.1 9.8 112 112-225 279-394 (501)
42 PRK02269 ribose-phosphate pyro 99.3 1.4E-11 3E-16 115.5 13.4 90 128-228 167-256 (320)
43 PRK07349 amidophosphoribosyltr 99.3 3.6E-12 7.8E-17 125.7 9.8 112 109-223 296-411 (500)
44 PLN02440 amidophosphoribosyltr 99.3 8.7E-12 1.9E-16 122.5 12.1 114 110-226 260-377 (479)
45 PRK01259 ribose-phosphate pyro 99.3 1.4E-11 3E-16 114.9 12.6 87 126-225 158-244 (309)
46 TIGR01134 purF amidophosphorib 99.3 3.6E-12 7.9E-17 124.0 8.2 112 110-225 258-374 (442)
47 PRK05793 amidophosphoribosyltr 99.3 1.3E-11 2.7E-16 121.1 11.5 112 112-225 275-389 (469)
48 PRK07272 amidophosphoribosyltr 99.3 6E-12 1.3E-16 123.7 8.8 114 110-225 270-386 (484)
49 PRK08341 amidophosphoribosyltr 99.3 1.3E-11 2.9E-16 120.2 10.7 113 109-224 255-369 (442)
50 PRK09123 amidophosphoribosyltr 99.3 2.8E-11 6.1E-16 118.9 12.6 112 109-225 279-396 (479)
51 PRK04923 ribose-phosphate pyro 99.3 3.7E-11 8E-16 112.6 12.7 86 128-226 168-254 (319)
52 PRK00553 ribose-phosphate pyro 99.3 4.2E-11 9E-16 112.8 13.0 84 129-225 171-254 (332)
53 COG0634 Hpt Hypoxanthine-guani 99.3 1.1E-10 2.4E-15 100.5 14.3 128 100-238 6-147 (178)
54 PRK07631 amidophosphoribosyltr 99.3 1.1E-11 2.3E-16 121.8 8.9 112 110-224 268-383 (475)
55 PRK06388 amidophosphoribosyltr 99.2 4E-11 8.6E-16 117.8 11.4 110 110-223 276-390 (474)
56 COG2236 Predicted phosphoribos 99.2 4E-11 8.6E-16 105.1 10.0 117 104-230 5-128 (192)
57 TIGR01251 ribP_PPkin ribose-ph 99.2 7.5E-11 1.6E-15 109.8 12.4 102 112-227 147-248 (308)
58 PRK07847 amidophosphoribosyltr 99.2 4.3E-11 9.4E-16 118.4 11.1 113 109-223 286-401 (510)
59 PRK03092 ribose-phosphate pyro 99.2 1E-10 2.2E-15 109.0 12.3 100 113-225 136-237 (304)
60 COG0462 PrsA Phosphoribosylpyr 99.2 1.1E-10 2.4E-15 108.8 12.0 87 128-226 165-251 (314)
61 PRK06827 phosphoribosylpyropho 99.2 2.1E-10 4.5E-15 109.9 13.3 95 126-228 207-303 (382)
62 PRK02458 ribose-phosphate pyro 99.2 2.6E-10 5.6E-15 107.1 12.0 85 128-226 171-255 (323)
63 PLN02369 ribose-phosphate pyro 99.1 6.5E-10 1.4E-14 103.5 12.3 83 129-224 154-237 (302)
64 PRK02812 ribose-phosphate pyro 99.1 8.6E-10 1.9E-14 103.9 12.0 85 128-225 181-266 (330)
65 COG2065 PyrR Pyrimidine operon 99.1 1.4E-09 3E-14 92.9 11.2 124 105-238 6-150 (179)
66 PLN02297 ribose-phosphate pyro 99.1 1.4E-09 3E-14 102.3 11.6 97 115-227 169-268 (326)
67 PTZ00145 phosphoribosylpyropho 99.0 4.8E-09 1.1E-13 102.0 12.0 85 128-225 281-371 (439)
68 COG1926 Predicted phosphoribos 98.9 6.2E-09 1.4E-13 92.1 10.7 143 109-252 9-199 (220)
69 COG0034 PurF Glutamine phospho 98.9 5.4E-09 1.2E-13 101.3 7.4 111 110-224 268-383 (470)
70 PRK00129 upp uracil phosphorib 98.8 3.1E-08 6.8E-13 87.4 10.3 92 129-230 73-165 (209)
71 TIGR01091 upp uracil phosphori 98.7 6.8E-08 1.5E-12 85.3 10.0 93 128-230 70-163 (207)
72 PF14572 Pribosyl_synth: Phosp 98.7 8.1E-08 1.8E-12 83.7 8.9 98 128-227 5-121 (184)
73 KOG3367 Hypoxanthine-guanine p 98.6 2.4E-07 5.2E-12 80.0 9.7 127 100-230 31-166 (216)
74 KOG1448 Ribose-phosphate pyrop 98.5 4.1E-07 8.9E-12 84.2 9.2 109 101-225 142-250 (316)
75 KOG0572 Glutamine phosphoribos 98.4 5.1E-07 1.1E-11 86.2 6.5 109 112-224 278-391 (474)
76 PF15609 PRTase_2: Phosphoribo 97.8 0.00032 7E-09 61.6 12.2 135 91-229 13-162 (191)
77 PLN02541 uracil phosphoribosyl 97.8 0.00012 2.6E-09 66.6 9.3 45 186-230 154-200 (244)
78 PF14681 UPRTase: Uracil phosp 97.4 0.0053 1.2E-07 54.2 13.3 89 129-230 70-164 (207)
79 COG0035 Upp Uracil phosphoribo 96.6 0.0083 1.8E-07 53.5 7.4 89 129-230 73-166 (210)
80 PF15610 PRTase_3: PRTase ComF 94.6 0.43 9.4E-06 44.2 10.8 123 102-228 26-178 (274)
81 KOG1377 Uridine 5'- monophosph 93.5 0.12 2.5E-06 47.4 4.8 124 97-229 64-192 (261)
82 KOG1503 Phosphoribosylpyrophos 92.4 1.3 2.8E-05 40.9 9.8 116 102-223 147-281 (354)
83 COG3535 Uncharacterized conser 82.0 40 0.00087 32.4 13.0 113 106-224 76-191 (357)
84 KOG1017 Predicted uracil phosp 73.1 9.5 0.00021 34.4 5.8 43 188-230 188-232 (267)
85 PRK12342 hypothetical protein; 63.0 25 0.00054 32.3 6.6 40 115-154 98-141 (254)
86 PF13793 Pribosyltran_N: N-ter 61.5 83 0.0018 25.2 10.3 74 135-222 7-84 (116)
87 PRK10618 phosphotransfer inter 61.0 53 0.0012 35.3 9.6 33 187-222 687-719 (894)
88 PRK02812 ribose-phosphate pyro 56.0 1.3E+02 0.0028 28.6 10.3 80 129-222 22-105 (330)
89 PRK04923 ribose-phosphate pyro 55.7 1E+02 0.0022 29.1 9.6 75 134-222 12-90 (319)
90 PRK03359 putative electron tra 55.2 48 0.001 30.4 7.1 40 114-153 100-143 (256)
91 PRK08057 cobalt-precorrin-6x r 51.9 29 0.00062 31.7 5.0 39 121-159 185-225 (248)
92 PTZ00145 phosphoribosylpyropho 48.9 1.7E+02 0.0037 29.2 10.1 82 128-223 119-204 (439)
93 KOG0731 AAA+-type ATPase conta 48.4 18 0.0004 38.3 3.5 62 88-155 300-375 (774)
94 PF11382 DUF3186: Protein of u 48.3 39 0.00085 31.7 5.5 43 187-229 81-123 (308)
95 PRK07199 phosphoribosylpyropho 45.6 2.4E+02 0.0051 26.4 10.2 74 135-222 9-85 (301)
96 PLN02369 ribose-phosphate pyro 45.4 1.6E+02 0.0035 27.5 9.1 70 139-222 2-75 (302)
97 PRK00934 ribose-phosphate pyro 44.3 2E+02 0.0043 26.5 9.5 74 135-222 6-82 (285)
98 cd01714 ETF_beta The electron 44.1 42 0.00091 29.3 4.7 44 107-153 92-139 (202)
99 PRK01259 ribose-phosphate pyro 42.6 2.1E+02 0.0046 26.7 9.5 74 135-222 7-84 (309)
100 TIGR01251 ribP_PPkin ribose-ph 42.6 1.8E+02 0.0038 27.2 8.9 74 135-222 7-85 (308)
101 cd01715 ETF_alpha The electron 42.2 55 0.0012 27.3 5.0 41 113-153 70-111 (168)
102 PRK02269 ribose-phosphate pyro 42.1 2.9E+02 0.0064 26.0 10.4 74 135-222 12-89 (320)
103 PRK03092 ribose-phosphate pyro 42.0 1.8E+02 0.0039 27.2 8.8 69 140-222 1-73 (304)
104 PRK04195 replication factor C 41.5 1.8E+02 0.0039 28.7 9.2 114 100-220 12-134 (482)
105 PRK00553 ribose-phosphate pyro 40.3 3.2E+02 0.007 25.9 10.4 79 131-223 12-94 (332)
106 TIGR00715 precor6x_red precorr 39.9 59 0.0013 29.7 5.1 39 121-159 192-233 (256)
107 TIGR00215 lpxB lipid-A-disacch 39.4 57 0.0012 31.1 5.2 42 114-155 77-119 (385)
108 smart00450 RHOD Rhodanese Homo 39.3 60 0.0013 23.1 4.3 33 186-221 53-85 (100)
109 PF07931 CPT: Chloramphenicol 39.3 39 0.00084 29.2 3.7 36 188-224 82-118 (174)
110 PF01488 Shikimate_DH: Shikima 38.3 72 0.0016 25.7 5.0 36 187-229 10-45 (135)
111 PF04392 ABC_sub_bind: ABC tra 37.9 70 0.0015 29.0 5.4 139 75-222 14-166 (294)
112 PF07726 AAA_3: ATPase family 36.0 1.6E+02 0.0035 24.5 6.7 77 139-218 14-92 (131)
113 cd00158 RHOD Rhodanese Homolog 35.7 75 0.0016 22.3 4.3 33 186-221 47-79 (89)
114 PF02571 CbiJ: Precorrin-6x re 35.5 73 0.0016 29.0 5.0 39 121-159 189-229 (249)
115 cd01444 GlpE_ST GlpE sulfurtra 35.3 66 0.0014 23.4 4.0 33 186-221 53-85 (96)
116 cd01529 4RHOD_Repeats Member o 34.1 75 0.0016 23.5 4.2 32 187-221 54-85 (96)
117 PF01012 ETF: Electron transfe 34.0 56 0.0012 27.0 3.8 46 106-154 73-119 (164)
118 PRK01021 lpxB lipid-A-disaccha 33.8 68 0.0015 33.2 5.0 43 112-154 296-341 (608)
119 COG0784 CheY FOG: CheY-like re 33.6 84 0.0018 23.7 4.5 26 188-216 4-29 (130)
120 cd01985 ETF The electron trans 33.6 75 0.0016 26.7 4.5 40 114-153 79-119 (181)
121 PRK02458 ribose-phosphate pyro 32.2 4.4E+02 0.0095 24.9 10.5 81 129-223 10-94 (323)
122 PLN02297 ribose-phosphate pyro 30.1 4.9E+02 0.011 24.8 10.3 83 129-224 17-103 (326)
123 cd06388 PBP1_iGluR_AMPA_GluR4 29.7 2.2E+02 0.0047 27.0 7.4 103 115-221 53-156 (371)
124 TIGR03492 conserved hypothetic 29.2 94 0.002 29.9 4.9 60 91-154 55-118 (396)
125 PF02684 LpxB: Lipid-A-disacch 28.7 97 0.0021 30.0 4.9 41 111-151 67-108 (373)
126 COG2086 FixA Electron transfer 28.7 2.4E+02 0.0051 26.1 7.2 44 114-157 99-147 (260)
127 PRK00025 lpxB lipid-A-disaccha 27.8 1.2E+02 0.0026 27.9 5.3 41 115-155 74-115 (380)
128 cd06356 PBP1_Amide_Urea_BP_lik 27.4 2.5E+02 0.0055 25.5 7.3 112 105-223 49-167 (334)
129 cd06339 PBP1_YraM_LppC_lipopro 27.1 1.7E+02 0.0037 26.8 6.1 111 108-224 45-160 (336)
130 TIGR01426 MGT glycosyltransfer 27.0 1.8E+02 0.0039 27.2 6.3 35 118-154 84-118 (392)
131 COG0462 PrsA Phosphoribosylpyr 26.0 3E+02 0.0065 26.3 7.5 76 135-224 11-90 (314)
132 PF13528 Glyco_trans_1_3: Glyc 25.8 2E+02 0.0043 25.7 6.2 41 113-156 81-121 (318)
133 PF12646 DUF3783: Domain of un 25.4 1.5E+02 0.0033 20.7 4.2 35 191-227 2-36 (58)
134 cd03786 GT1_UDP-GlcNAc_2-Epime 24.9 2.4E+02 0.0051 25.6 6.5 43 113-155 75-118 (363)
135 PF02875 Mur_ligase_C: Mur lig 24.9 1.1E+02 0.0024 22.6 3.7 35 190-224 12-48 (91)
136 KOG0733 Nuclear AAA ATPase (VC 24.7 53 0.0011 34.5 2.3 61 91-155 182-254 (802)
137 TIGR00236 wecB UDP-N-acetylglu 24.3 2.5E+02 0.0054 25.9 6.7 46 110-155 70-116 (365)
138 TIGR00150 HI0065_YjeE ATPase, 24.0 3.2E+02 0.007 22.5 6.6 47 105-151 2-49 (133)
139 PRK00779 ornithine carbamoyltr 23.8 1.1E+02 0.0024 28.6 4.2 98 108-222 85-182 (304)
140 COG2099 CobK Precorrin-6x redu 23.7 5.2E+02 0.011 24.0 8.4 44 116-159 56-103 (257)
141 PF06032 DUF917: Protein of un 23.2 1.1E+02 0.0023 29.5 4.0 44 113-157 79-124 (353)
142 PRK04940 hypothetical protein; 23.2 4E+02 0.0088 23.2 7.3 50 106-156 37-89 (180)
143 PF13477 Glyco_trans_4_2: Glyc 23.0 2.1E+02 0.0045 22.1 5.1 39 117-155 65-105 (139)
144 PRK11107 hybrid sensory histid 22.6 4.6E+02 0.01 27.2 8.9 32 187-221 534-565 (919)
145 KOG1197 Predicted quinone oxid 22.3 64 0.0014 30.4 2.2 71 185-260 143-220 (336)
146 cd01523 RHOD_Lact_B Member of 22.2 1.5E+02 0.0032 22.0 4.0 30 186-218 58-87 (100)
147 cd06389 PBP1_iGluR_AMPA_GluR2 22.1 2.6E+02 0.0057 26.2 6.5 42 114-156 46-88 (370)
148 TIGR01133 murG undecaprenyldip 21.7 2.3E+02 0.005 25.5 5.8 39 116-154 80-118 (348)
149 cd08171 GlyDH-like2 Glycerol d 21.5 2.7E+02 0.0059 26.1 6.4 44 113-156 65-109 (345)
150 PRK11466 hybrid sensory histid 20.9 5.4E+02 0.012 26.9 9.0 30 188-220 680-709 (914)
151 COG0371 GldA Glycerol dehydrog 20.8 2.1E+02 0.0045 27.8 5.4 43 115-157 73-116 (360)
152 PF09651 Cas_APE2256: CRISPR-a 20.6 2E+02 0.0042 23.6 4.6 47 111-157 73-125 (136)
153 TIGR01809 Shik-DH-AROM shikima 20.3 1.8E+02 0.0039 26.6 4.8 31 188-222 124-154 (282)
154 cd01075 NAD_bind_Leu_Phe_Val_D 20.1 81 0.0018 27.4 2.3 68 126-211 85-153 (200)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.1e-43 Score=294.35 Aligned_cols=169 Identities=57% Similarity=0.971 Sum_probs=159.9
Q ss_pred cchHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhc---CCccEEEeecCchhhhHHHHHHHhCC
Q 024917 74 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA 150 (260)
Q Consensus 74 ~~~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~---~~iDvVVgve~rG~~lA~~LA~~Lgv 150 (260)
.|++++.+++.||.+||||++||+|.|+++++.||.+|+.+.+.+++++++ .++|+|+|+|+|||+|+..+|.++|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 589999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred CEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 151 KFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 151 p~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
+|+++||++|+||++++++|.++||.++++|+.+++.+|+||+||||+++||+|+.||.+|+++.|++++.|+|++++++
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~ 163 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPE 163 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cC-------cceEEeeeee
Q 024917 231 CF-------SSYILLFSYA 242 (260)
Q Consensus 231 ~~-------~e~~~L~~~~ 242 (260)
.. ...++|++++
T Consensus 164 LkGr~kL~~~pl~~Ll~~~ 182 (183)
T KOG1712|consen 164 LKGREKLKGKPLFSLLEYQ 182 (183)
T ss_pred cCCccccCCCccEEEeecC
Confidence 21 2566666543
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=1.3e-34 Score=251.77 Aligned_cols=157 Identities=76% Similarity=1.194 Sum_probs=150.3
Q ss_pred cchHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE
Q 024917 74 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 153 (260)
Q Consensus 74 ~~~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v 153 (260)
.||+.+.|++.||++|+||++|+.|+|++.++.||+.++.+++.|++++++.++|+|+|++++|+++|..+|..+|+|++
T Consensus 10 ~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 10 GDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFV 89 (187)
T ss_pred CChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEE
Confidence 58999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred EEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 154 PMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 154 ~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
++||.+|+++++.+..|..+|+++.++++.+.+.+|+|||||||+++||+|+.+++++|+++|+++++++|+++...
T Consensus 90 ~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~ 166 (187)
T PLN02293 90 PLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPE 166 (187)
T ss_pred EEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCC
Confidence 99999999999988888888998888888888889999999999999999999999999999999999999999776
No 3
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.3e-32 Score=233.78 Aligned_cols=156 Identities=44% Similarity=0.684 Sum_probs=149.0
Q ss_pred hHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEE
Q 024917 76 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 155 (260)
Q Consensus 76 ~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~i 155 (260)
...+.|++.+|..|+||++|+.|+|.+..+.++.++....+.+++.+.+.++|.|+|+|++||++|.++|.+||+||+++
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 34677999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred ecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc
Q 024917 156 RKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 231 (260)
Q Consensus 156 RK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~ 231 (260)
||.+|++...+...|..+|+.+.++++.+.+.+|+|||||||+++||+|+.++.++++++|++++++++++++++.
T Consensus 83 RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~ 158 (179)
T COG0503 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGEL 158 (179)
T ss_pred EecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCcc
Confidence 9999999998888888888888899999999999999999999999999999999999999999999999999874
No 4
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.97 E-value=7.2e-30 Score=232.79 Aligned_cols=176 Identities=19% Similarity=0.351 Sum_probs=158.6
Q ss_pred ccccchHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCC
Q 024917 71 VKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGA 150 (260)
Q Consensus 71 ~~~~~~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgv 150 (260)
..|+++.++.|++.-|.+|+ | |+++++++.||+.++.+++.+++.+.+.++|+|+|++++|+++|.++|.+||+
T Consensus 79 ~~~~~~l~~~l~~~~rilpg----g--~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~v 152 (268)
T TIGR01743 79 EEFVEELCQSLSEPERILPG----G--YLYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNV 152 (268)
T ss_pred HHHHHHHHHHHHHCCCcccC----C--eEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCC
Confidence 34789999999999999999 7 67899999999999999999999999889999999999999999999999999
Q ss_pred CEEEEecCCCC-CCceeeeeeeecccc--eeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 151 KFVPMRKPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 151 p~v~iRK~~kl-~~~~~s~~y~~e~g~--~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
|++++||.+|. ++++++.+|...+.. ..++++++.+.+|+|||||||+++||+|+.+++++++++|+++++++|+++
T Consensus 153 p~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve 232 (268)
T TIGR01743 153 PLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLID 232 (268)
T ss_pred CEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEE
Confidence 99999999987 889999988764432 258888888889999999999999999999999999999999999999999
Q ss_pred cCc----cCcceEEeeeeeccCceeeeee
Q 024917 228 LNA----CFSSYILLFSYATNGFTQFTIT 252 (260)
Q Consensus 228 ~~~----~~~e~~~L~~~~~~~~~~~~~~ 252 (260)
+.+ ...+|.+|+.++.......+|.
T Consensus 233 ~~~~~~~l~~~~~SL~~~~~~~~~~~~~~ 261 (268)
T TIGR01743 233 NEGVDEKLVDDYMSLLTLSNINEKEKSIE 261 (268)
T ss_pred CCCChHHcCCCceEEEEEeeccccCCeEE
Confidence 975 3469999999988876665554
No 5
>PRK09213 pur operon repressor; Provisional
Probab=99.97 E-value=1.1e-29 Score=231.99 Aligned_cols=176 Identities=23% Similarity=0.390 Sum_probs=158.4
Q ss_pred cccchHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCC
Q 024917 72 KAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK 151 (260)
Q Consensus 72 ~~~~~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp 151 (260)
.|+++++++|.+..|.+|+ | |+++++++.||+.++.+++.+++.+.+.++|+|+|++++||++|..+|..||+|
T Consensus 82 ~~~~~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp 155 (271)
T PRK09213 82 EFVEELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVP 155 (271)
T ss_pred HHHHHHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCC
Confidence 3688999999999999999 6 778999999999999999999999998889999999999999999999999999
Q ss_pred EEEEecCCCC-CCceeeeeeeecccc--eeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEec
Q 024917 152 FVPMRKPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 152 ~v~iRK~~kl-~~~~~s~~y~~e~g~--~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
++++||..|. ++++++.+|...... ..++++++.+.+|+|||||||+++||+|+.+++++++++|+++++++|++++
T Consensus 156 ~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~ 235 (271)
T PRK09213 156 FVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVET 235 (271)
T ss_pred EEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEEC
Confidence 9999999887 889999888664322 3588888889999999999999999999999999999999999999999999
Q ss_pred Cc----cCcceEEeeeeeccCceeeeeec
Q 024917 229 NA----CFSSYILLFSYATNGFTQFTITS 253 (260)
Q Consensus 229 ~~----~~~e~~~L~~~~~~~~~~~~~~~ 253 (260)
.+ ...+|.+|+.++.......+|.-
T Consensus 236 ~~~~~~l~~~~~SL~~~~~vd~~~~~~~~ 264 (271)
T PRK09213 236 KEPEERLVDDYVSLLKLSEVDEKNKTIDV 264 (271)
T ss_pred CCChhhcCCceEEEEEEehhcccCCeEEe
Confidence 76 33599999999888777766654
No 6
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.5e-29 Score=214.33 Aligned_cols=154 Identities=55% Similarity=0.931 Sum_probs=141.4
Q ss_pred HHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEe
Q 024917 77 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 77 ~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iR 156 (260)
++++|+...+.+|.||.+++.|.|+++++.+|+.++.+++.+++++++.++|+|+|++.+|+++|..+|+.+|+|++++|
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~r 81 (175)
T PRK02304 2 MLEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVR 81 (175)
T ss_pred hHHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEE
Confidence 46889999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred cCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 157 KPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 157 K~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
|..+.++...+..|+.+++++.+++..+.+.+|++|||||||++||+|+.+++++|+++|+++++++|++++++
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~ 155 (175)
T PRK02304 82 KPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPD 155 (175)
T ss_pred cCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEccc
Confidence 98877666677777777777778776666679999999999999999999999999999999999999999875
No 7
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.96 E-value=5e-29 Score=212.41 Aligned_cols=150 Identities=53% Similarity=0.875 Sum_probs=137.1
Q ss_pred HhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCC
Q 024917 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 160 (260)
Q Consensus 81 l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~k 160 (260)
|++.++.+|+||.||+.|.|++.++.||+.++.+++.+++++.+.++|+|+|++.+||++|..+|+.+|+|++.++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45678899999999999999999999999999999999999988889999999999999999999999999999999887
Q ss_pred CCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 161 LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 161 l~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
.++...+..|+.+++.+.+++......+|++|||||||+|||+|+.+++++|+++|+++++++++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~ 150 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKD 150 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccc
Confidence 7777777777777777777776555669999999999999999999999999999999999999999874
No 8
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.96 E-value=2.3e-28 Score=212.88 Aligned_cols=172 Identities=21% Similarity=0.221 Sum_probs=142.5
Q ss_pred chHHHHHhccccccCCCCCCCceEEe-chhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE
Q 024917 75 DPRIAGISSAIRVIPDFPKPGIMFQD-ITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 153 (260)
Q Consensus 75 ~~~~~~l~~~iR~~p~fp~~Gi~f~D-i~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v 153 (260)
+++.+++.+.-|++|+ ||+|.+ +.++..||++++.+++.+++.+.+.++|+|+|++++||++|+.+|.++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 2 KLLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVV 77 (189)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678999999999999 876543 34445999999999999999999889999999999999999999999999999
Q ss_pred EEecCCCCC--Cceeeee---eeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEec
Q 024917 154 PMRKPKKLP--GEVISEE---YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 154 ~iRK~~kl~--~~~~s~~---y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
++||.+|.+ ++.++.+ |..+ +.+.++++.+.+.+|+|||||||+++||+|+.+++++++++|++++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~ 156 (189)
T PRK09219 78 FAKKKKSLTLTDDVYTATVYSFTKQ-VTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEK 156 (189)
T ss_pred EEEECCCCCCCCceEEEEEeeeccC-ceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEc
Confidence 999988864 5555432 3222 445688998888899999999999999999999999999999999999999998
Q ss_pred Cc--c-------CcceEEeeeeeccCceeeee
Q 024917 229 NA--C-------FSSYILLFSYATNGFTQFTI 251 (260)
Q Consensus 229 ~~--~-------~~e~~~L~~~~~~~~~~~~~ 251 (260)
+. . .-.+.+|+.+.+..--.+++
T Consensus 157 ~~~~g~~~l~~~g~~~~sl~~~~~~~~~~~~~ 188 (189)
T PRK09219 157 SFQDGRKLLEEKGYRVESLARIASLENGKVTF 188 (189)
T ss_pred cCccHHHHHHhcCCcEEEEEEeeeccCCeEEE
Confidence 63 1 12577788776554444443
No 9
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.96 E-value=2.9e-28 Score=212.56 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=142.4
Q ss_pred chHHHHHhccccccCCCCCCCceEEe-chhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE
Q 024917 75 DPRIAGISSAIRVIPDFPKPGIMFQD-ITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 153 (260)
Q Consensus 75 ~~~~~~l~~~iR~~p~fp~~Gi~f~D-i~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v 153 (260)
+++.++|.+.-|.+|+ ||+|.| +.+...||+.++.+++.+++++.+.++|+|+|++++||++|..+|.++|+|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678999999999999 988776 34555899999999999999999889999999999999999999999999999
Q ss_pred EEecCCCCCC-----ceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEec
Q 024917 154 PMRKPKKLPG-----EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 154 ~iRK~~kl~~-----~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
++||++|.+. .+...+|.. ++...++++.+.+.+|+||||||||+|||+|+.+++++++++|+++++++|++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9999887654 222334443 5566788888888899999999999999999999999999999999999999999
Q ss_pred Ccc---------CcceEEeeeeeccCceeee
Q 024917 229 NAC---------FSSYILLFSYATNGFTQFT 250 (260)
Q Consensus 229 ~~~---------~~e~~~L~~~~~~~~~~~~ 250 (260)
... .-++.+|+.+.....-+-+
T Consensus 157 ~~~~g~~~l~~~gvpv~sL~~~~~l~~g~~~ 187 (191)
T TIGR01744 157 SFQNGRQELVELGYRVESLARIQSLEEGKVT 187 (191)
T ss_pred cCccHHHHHHhcCCcEEEEEEEeeEeCCEEE
Confidence 731 1266777776644433333
No 10
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.95 E-value=6.8e-27 Score=203.14 Aligned_cols=147 Identities=22% Similarity=0.347 Sum_probs=124.2
Q ss_pred HHHhccccccCCCCCCCc--eEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEe
Q 024917 79 AGISSAIRVIPDFPKPGI--MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 79 ~~l~~~iR~~p~fp~~Gi--~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iR 156 (260)
+.+...+|++|+||.+|+ .|+|+++++. |+.++.+++.+++.+ +.++|+|+|++++|+++|..+|..+++|+.+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 4 KNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 446678999999999999 8999999999 999999999999988 668999999999999999999999999999998
Q ss_pred cCCCCCCceeeeeee-ecccceeEE--EEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 157 KPKKLPGEVISEEYS-LEYGKDVME--MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 157 K~~kl~~~~~s~~y~-~e~g~~~le--l~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
|.+. ...+..|. .+++++.++ +..+.+.+|+|||||||+++||+|+.+++++++++|+++++++|++++.+
T Consensus 82 k~~~---~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~ 155 (187)
T PRK12560 82 WYPY---SLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQ 155 (187)
T ss_pred cCCC---cccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecc
Confidence 7543 22211111 233333343 44456679999999999999999999999999999999999999999975
No 11
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=200.40 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=126.6
Q ss_pred HHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEe
Q 024917 77 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 77 ~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iR 156 (260)
+.+.+.+.+++.|+ | |+|++.++.||+.++.+++.+++++.+.++|+|+|++++|+++|..+|+.||+|++++|
T Consensus 68 ~~~~l~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 68 LEEEVKARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred hHHHHHhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 45556777877776 6 88999999999999999999999998888999999999999999999999999999999
Q ss_pred cCCCC-CCceeeeeeeecc-cc-eeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc
Q 024917 157 KPKKL-PGEVISEEYSLEY-GK-DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 231 (260)
Q Consensus 157 K~~kl-~~~~~s~~y~~e~-g~-~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~ 231 (260)
|.++. .+.+++ +|.... +. ..+++..+.+.+|+|||||||+++||+|+.+++++++++|+++++++|+++..+.
T Consensus 142 k~~~~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~ 218 (238)
T PRK08558 142 KSKETGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV 218 (238)
T ss_pred ecCCCCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch
Confidence 87664 344555 554221 21 2467777778899999999999999999999999999999999999999999764
No 12
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=4.8e-25 Score=191.82 Aligned_cols=125 Identities=23% Similarity=0.385 Sum_probs=113.3
Q ss_pred CCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeee
Q 024917 93 KPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSL 172 (260)
Q Consensus 93 ~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~ 172 (260)
+++..|+|+..++.+|+.++.+++.+++.+.+.++|+|+|++.+|+++|..+|..+|+|++++||..|
T Consensus 40 ~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k------------ 107 (187)
T PRK13810 40 KKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVK------------ 107 (187)
T ss_pred CcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCC------------
Confidence 34558999999999999999999999999998899999999999999999999999999999999876
Q ss_pred cccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc
Q 024917 173 EYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 231 (260)
Q Consensus 173 e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~ 231 (260)
+|+++.+ ..+.+.+|+||+|||||+|||+|+.+++++++++|+++++++|++++.+.
T Consensus 108 ~~g~~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g 164 (187)
T PRK13810 108 DYGTGSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEG 164 (187)
T ss_pred ccCCCce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcC
Confidence 4555443 24667799999999999999999999999999999999999999999763
No 13
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=181.15 Aligned_cols=158 Identities=23% Similarity=0.316 Sum_probs=126.5
Q ss_pred HhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCC
Q 024917 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 160 (260)
Q Consensus 81 l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~k 160 (260)
+++..|++|+||.++..|++...++.||.+++.+++.+++.+.+ ++|+|+|++.+|+++|..+|+.+|+|++.++|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 67889999999988888999999999999999999999999986 78999999999999999999999999988887554
Q ss_pred --CCCceeeeeeeeccccee-EEEEecc--cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc--Cc
Q 024917 161 --LPGEVISEEYSLEYGKDV-MEMHVGA--VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC--FS 233 (260)
Q Consensus 161 --l~~~~~s~~y~~e~g~~~-lel~~~~--i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~--~~ 233 (260)
.+...++..+....+... +.+.... ..+|++||||||+++||+|+.+++++|+++|++++++++++..++. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~~ 166 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNRL 166 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCCC
Confidence 223332222222222222 2222211 2479999999999999999999999999999999999999999873 34
Q ss_pred ceEEee
Q 024917 234 SYILLF 239 (260)
Q Consensus 234 e~~~L~ 239 (260)
|.+.|.
T Consensus 167 ~~~~~~ 172 (178)
T PRK07322 167 DVIYLA 172 (178)
T ss_pred ceEeec
Confidence 555443
No 14
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=7.5e-23 Score=180.51 Aligned_cols=134 Identities=15% Similarity=0.210 Sum_probs=115.0
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 024917 97 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (260)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (260)
.|+|++.++.+|+.++.+++.+++.+.+.++|+|+|++.+|+++|..+|..+|+|+++.||+.|.++..
T Consensus 38 ~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~----------- 106 (206)
T PRK13809 38 IYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPS----------- 106 (206)
T ss_pred EEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCc-----------
Confidence 799999999999999999999999988778999999999999999999999999999999988855431
Q ss_pred eeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCccC--------cceEEeeeee
Q 024917 177 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACF--------SSYILLFSYA 242 (260)
Q Consensus 177 ~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~~--------~e~~~L~~~~ 242 (260)
+.+++ .+.+.+|++|+|||||+|||+|+.+++++|+++|+++++++|++++.... -+..+|+.+.
T Consensus 107 ~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl~~~~ 179 (206)
T PRK13809 107 DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSSVFTVP 179 (206)
T ss_pred CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEEEEEHH
Confidence 12333 34556999999999999999999999999999999999999999976321 2556666553
No 15
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.89 E-value=3.1e-22 Score=179.62 Aligned_cols=147 Identities=18% Similarity=0.316 Sum_probs=114.4
Q ss_pred HHHhccccccCCCCCCCceEEechhhccCH---HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCC-EEE
Q 024917 79 AGISSAIRVIPDFPKPGIMFQDITTLLLDT---KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK-FVP 154 (260)
Q Consensus 79 ~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp---~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp-~v~ 154 (260)
..+..++|.+|++| +|++.++.++ +.++.+++.|++++.+.++|+|+|++++||++|..+|++||++ +++
T Consensus 40 ~~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vp 113 (233)
T PRK06031 40 RQLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVP 113 (233)
T ss_pred CEeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceE
Confidence 34788999999976 5999999998 4556799999999987789999999999999999999999975 566
Q ss_pred EecCCCCCC-ceee---eeeeecccceeEEEEec--ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEec
Q 024917 155 MRKPKKLPG-EVIS---EEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 155 iRK~~kl~~-~~~s---~~y~~e~g~~~lel~~~--~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
+++.+|... .... .++......+.+++... ...+|+||||||||++||+|+.+++++|+++|++++++++++++
T Consensus 114 l~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~ 193 (233)
T PRK06031 114 LGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQ 193 (233)
T ss_pred EEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEc
Confidence 666555311 0000 11111111223555443 23589999999999999999999999999999999999999999
Q ss_pred Ccc
Q 024917 229 NAC 231 (260)
Q Consensus 229 ~~~ 231 (260)
++.
T Consensus 194 g~~ 196 (233)
T PRK06031 194 SER 196 (233)
T ss_pred ccc
Confidence 874
No 16
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=6.5e-22 Score=169.42 Aligned_cols=128 Identities=23% Similarity=0.369 Sum_probs=107.6
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 024917 97 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (260)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (260)
.|+|+..++.+|+.++.+++.+++.+ ++|+|+|++.+|+++|..+|..+|+|++++||..| +|+.
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k------------~~g~ 94 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAK------------DHGK 94 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCC------------CCCC
Confidence 57899999999999999999987653 68999999999999999999999999999999766 2333
Q ss_pred eeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCccCc--------ceEEeeeee
Q 024917 177 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFS--------SYILLFSYA 242 (260)
Q Consensus 177 ~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~~~--------e~~~L~~~~ 242 (260)
..+.. +. .+|+||+||||+++||+|+.+++++|+++|+++++++|++++++... +..+|+.+.
T Consensus 95 ~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~sl~~~~ 165 (170)
T PRK13811 95 AGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTPLVRVS 165 (170)
T ss_pred cceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEEEeEHH
Confidence 22221 23 48999999999999999999999999999999999999999986322 555665543
No 17
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1e-21 Score=169.34 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=105.8
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 024917 97 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (260)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (260)
.|+|...++.+|+.++.+++.+++.+.+ .|+|+|++.+|+++|..+|..+|+|+++.||.+| +||.
T Consensus 31 ~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k------------~yg~ 96 (176)
T PRK13812 31 YYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAK------------EYGT 96 (176)
T ss_pred EEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCC------------cCCC
Confidence 6899999999999999999999999864 3899999999999999999999999999999776 3444
Q ss_pred eeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc
Q 024917 177 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 231 (260)
Q Consensus 177 ~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~ 231 (260)
... ..+.+.+|++||||||+++||+|+.+++++|+++|+++++++|+++++..
T Consensus 97 ~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~ 149 (176)
T PRK13812 97 GNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEG 149 (176)
T ss_pred CCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcc
Confidence 322 12456699999999999999999999999999999999999999999753
No 18
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.88 E-value=8.9e-22 Score=192.19 Aligned_cols=141 Identities=17% Similarity=0.278 Sum_probs=122.7
Q ss_pred cCCCC-CCCc---eEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCC
Q 024917 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG 163 (260)
Q Consensus 88 ~p~fp-~~Gi---~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~ 163 (260)
+.+|- .+|. .|+|+..++.+|+.++.+++.+++.+++.++|+|+|++.+|+++|+.+|..+|+|+++.||+.|
T Consensus 302 fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K--- 378 (477)
T PRK05500 302 FGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVK--- 378 (477)
T ss_pred eCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcC---
Confidence 34555 4455 7999999999999999999999999988889999999999999999999999999999999887
Q ss_pred ceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCccCc--------ce
Q 024917 164 EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFS--------SY 235 (260)
Q Consensus 164 ~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~~~--------e~ 235 (260)
+||+.. +.++.+.+|+||||||||+|||+|+.+++++|+++|++|++++|++++.+... ++
T Consensus 379 ---------~~G~~~--~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L~~~gv~~ 447 (477)
T PRK05500 379 ---------AHGTRR--LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKLQSHGYQA 447 (477)
T ss_pred ---------ccCCCc--eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHHHhcCCCE
Confidence 556544 23566789999999999999999999999999999999999999999987432 56
Q ss_pred EEeeeee
Q 024917 236 ILLFSYA 242 (260)
Q Consensus 236 ~~L~~~~ 242 (260)
.+|+.+.
T Consensus 448 ~Sl~tl~ 454 (477)
T PRK05500 448 YSVLTIS 454 (477)
T ss_pred EEEEEHH
Confidence 6666664
No 19
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.87 E-value=2.8e-21 Score=165.58 Aligned_cols=127 Identities=15% Similarity=0.204 Sum_probs=109.7
Q ss_pred cCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhc-CCccEEEeecCchhhhHHHHHHHhCCC-----EEEEecCCCC
Q 024917 88 IPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAK-----FVPMRKPKKL 161 (260)
Q Consensus 88 ~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~-~~iDvVVgve~rG~~lA~~LA~~Lgvp-----~v~iRK~~kl 161 (260)
-.+.+.+ .|+|+..++.+|+.++.+++.+++.+.+ .++|+|+|++++|+++|..+|..+++| +++.||..+-
T Consensus 17 ~SG~~s~--~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~ 94 (173)
T TIGR00336 17 SSGRKSP--YYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKD 94 (173)
T ss_pred CCCCcCC--EEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCccc
Confidence 3444444 6899999999999999999999999986 689999999999999999999999999 9999987652
Q ss_pred CCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 162 PGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 162 ~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
++...+ ..+.+.+|++||||||+++||+|+.+++++|+++|+++++++|++++++
T Consensus 95 ------------~g~~~~--~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~ 149 (173)
T TIGR00336 95 ------------HGEGGN--IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQE 149 (173)
T ss_pred ------------CCCCCc--eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCc
Confidence 232221 1245668999999999999999999999999999999999999999976
No 20
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.86 E-value=1.7e-20 Score=164.39 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=118.9
Q ss_pred chHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHh--cCCccEEEeecCchhhhHHHHHHHhCCCE
Q 024917 75 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGAKF 152 (260)
Q Consensus 75 ~~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~--~~~iDvVVgve~rG~~lA~~LA~~Lgvp~ 152 (260)
.+=+.+|...-..-..=|+|+..|+|++.+..+|+.++.+++.|++.+. +.++|+|+|++.+|+++|..+|+.+++|+
T Consensus 32 ~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~ 111 (200)
T PRK02277 32 RETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDL 111 (200)
T ss_pred HHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCc
Confidence 3344555544443333377888999999999999999999999999874 35799999999999999999999999999
Q ss_pred EEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc-
Q 024917 153 VPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC- 231 (260)
Q Consensus 153 v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~- 231 (260)
.+.++.....+.. ......+.. .....+|++|||||||+|||+|+.+++++|+++|+++++++|+++++..
T Consensus 112 ~~~~~~k~~~~~~-------~~~~~~~~~-~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~g~~ 183 (200)
T PRK02277 112 AIYHPKKWDHGEG-------EKKTGSFSR-NFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKSGID 183 (200)
T ss_pred EEEeccccccccc-------ccccceecc-ccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECcchh
Confidence 7766543211100 000111110 0123489999999999999999999999999999999999999999752
Q ss_pred ---CcceEEeeeee
Q 024917 232 ---FSSYILLFSYA 242 (260)
Q Consensus 232 ---~~e~~~L~~~~ 242 (260)
.-++.+|+.+.
T Consensus 184 ~~~~vpv~sl~~~~ 197 (200)
T PRK02277 184 EIDGVPVYSLIRVV 197 (200)
T ss_pred hhcCCCeEEEEEEE
Confidence 12455666554
No 21
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.86 E-value=2.1e-20 Score=162.50 Aligned_cols=128 Identities=24% Similarity=0.342 Sum_probs=108.2
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHHhcC--CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecc
Q 024917 97 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 174 (260)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~i~~~--~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~ 174 (260)
.|+|.+.++.||+.++.+++.+++++.+. ++|+|+|++.+|+++|..+|+++++|+++.+|.++ .
T Consensus 27 ~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~---~---------- 93 (187)
T TIGR01367 27 YFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG---G---------- 93 (187)
T ss_pred eeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC---c----------
Confidence 68999999999999999999999999865 78999999999999999999999999998877542 0
Q ss_pred cceeEEEEec-ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCccC-----cceEEeeee
Q 024917 175 GKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACF-----SSYILLFSY 241 (260)
Q Consensus 175 g~~~lel~~~-~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~~-----~e~~~L~~~ 241 (260)
+.+..+ .+.+|++|||||||++||+|+.+++++|+++|++++++++++++.+.. -+..+|+.+
T Consensus 94 ----~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~~~~~~~~~~~~sl~~~ 162 (187)
T TIGR01367 94 ----MKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQGGKPDSGVPLMSLKEL 162 (187)
T ss_pred ----EEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcCCCcccCCCCEEEEEEE
Confidence 111112 345899999999999999999999999999999999999999998422 245555554
No 22
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.85 E-value=1.5e-20 Score=164.44 Aligned_cols=133 Identities=24% Similarity=0.301 Sum_probs=112.7
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHHhcC--CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecc
Q 024917 97 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 174 (260)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~i~~~--~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~ 174 (260)
.|+|++.++.||+.++.+++.+++++.+. ++|+|+|++.+|+++|..+|+.+++|+++.||..+. +
T Consensus 33 ~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~------------~ 100 (202)
T PRK00455 33 YYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKD------------H 100 (202)
T ss_pred eeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCC------------C
Confidence 58999999999999999999999999875 899999999999999999999999999999986652 2
Q ss_pred cce-eEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc--------cCcceEEeeeeecc
Q 024917 175 GKD-VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA--------CFSSYILLFSYATN 244 (260)
Q Consensus 175 g~~-~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~--------~~~e~~~L~~~~~~ 244 (260)
+.. .++ +...+|++||||||+++||+|+.+++++|+++|+++++++|+++++. ..-+..+|+.+...
T Consensus 101 g~~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~~~~~~~~~~~g~~~~sl~~~~~~ 176 (202)
T PRK00455 101 GEGGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQSAAQEVFADAGVPLISLITLDDL 176 (202)
T ss_pred CCCceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECcchHHHHHHhcCCcEEEEeeHHHH
Confidence 221 122 22347999999999999999999999999999999999999999962 23367777776543
No 23
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.84 E-value=4.9e-20 Score=161.90 Aligned_cols=143 Identities=22% Similarity=0.308 Sum_probs=121.3
Q ss_pred cCCCC-CCCc---eEEechhhccCHHHHHHHHHHHHHHHhc-CCccEEEeecCchhhhHHHHHHHhC-CC-EEEEecCCC
Q 024917 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIG-AK-FVPMRKPKK 160 (260)
Q Consensus 88 ~p~fp-~~Gi---~f~Di~~ll~dp~~~~~l~~~La~~i~~-~~iDvVVgve~rG~~lA~~LA~~Lg-vp-~v~iRK~~k 160 (260)
.++|+ .+|. .|+|...++.+|+..+.++..+++.+++ .++|+|+|++.+|+|+|..+|.+++ .| +++.||+.|
T Consensus 18 fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K 97 (201)
T COG0461 18 FGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAK 97 (201)
T ss_pred cCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEeceec
Confidence 67777 6666 7999999999999999999999999988 4899999999999999999999993 22 888999877
Q ss_pred CCCceeeeeeeeccccee-EEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc--------c
Q 024917 161 LPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA--------C 231 (260)
Q Consensus 161 l~~~~~s~~y~~e~g~~~-lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~--------~ 231 (260)
+||+.. ++ +...+|+||+|||||+|||+++..+++.|+++|++|++++|++++.. .
T Consensus 98 ------------~hG~~~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~ 162 (201)
T COG0461 98 ------------DHGTGGLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEY 162 (201)
T ss_pred ------------cCCCcceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhc
Confidence 566543 22 34449999999999999999999999999999999999999999964 3
Q ss_pred CcceEEeeeeeccC
Q 024917 232 FSSYILLFSYATNG 245 (260)
Q Consensus 232 ~~e~~~L~~~~~~~ 245 (260)
.-.+++|+.+++..
T Consensus 163 g~~~~sl~tl~dl~ 176 (201)
T COG0461 163 GVKLVSLVTLSDLL 176 (201)
T ss_pred CCceEEEeeHHHHH
Confidence 34778888876543
No 24
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.79 E-value=2e-18 Score=137.53 Aligned_cols=122 Identities=27% Similarity=0.376 Sum_probs=92.9
Q ss_pred hhccCHHHHHHHHHHHHHHHhcC--CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEE
Q 024917 103 TLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 180 (260)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~i~~~--~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~le 180 (260)
.++.+++.+..+++.+++++.+. ++|+|+|++.+|+++|..+|..++.|+...++...... . ............+.
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYP-G-SDKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEES-E-EEEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccc-c-chhhhhccCceEEe
Confidence 46789999999999999998864 56779999999999999999999999877665322100 0 00000011111222
Q ss_pred EEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEE
Q 024917 181 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 226 (260)
Q Consensus 181 l~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlv 226 (260)
.......+|++||||||+++||+|+.++++.|+++|++++++++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 3334556999999999999999999999999999999999999885
No 25
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.64 E-value=3.8e-15 Score=127.84 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=102.3
Q ss_pred CCCCCceEEechhhccCHHHHHHHHHHHHHH-Hhc--CCccEEEeecCchhhhHHHHHHHhCCCEE-EE-ecCCCCCCce
Q 024917 91 FPKPGIMFQDITTLLLDTKAFRDTIDLFVER-YKD--KNISVVAGIEARGFIFGPPIALAIGAKFV-PM-RKPKKLPGEV 165 (260)
Q Consensus 91 fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~-i~~--~~iDvVVgve~rG~~lA~~LA~~Lgvp~v-~i-RK~~kl~~~~ 165 (260)
-|.|-..|+|.+.+-..+..++.++..|++. +.. ..+|+|+|++..|+|+|+.+|..||..|. |. ||..+-.+.-
T Consensus 48 ~~~p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~ 127 (203)
T COG0856 48 VPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAG 127 (203)
T ss_pred CCCCcceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCC
Confidence 3445568999999999999999999999983 332 47999999999999999999999999984 43 4433321110
Q ss_pred eeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc
Q 024917 166 ISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 231 (260)
Q Consensus 166 ~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~ 231 (260)
. + +.+. +.-+-..|||++||||++|||+|+..+++.|++.|++.+.|++++++.+.
T Consensus 128 ~--------~-G~iS-~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~G~ 183 (203)
T COG0856 128 K--------G-GSIS-SNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKKGV 183 (203)
T ss_pred c--------C-ceee-cccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccCCc
Confidence 0 0 1111 11122489999999999999999999999999999999999999999873
No 26
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.59 E-value=2.5e-14 Score=121.15 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=89.8
Q ss_pred hccCHHHHHHHHHHHHHHHhcC-CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEE
Q 024917 104 LLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH 182 (260)
Q Consensus 104 ll~dp~~~~~l~~~La~~i~~~-~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~ 182 (260)
++.+.+.+...++.+++++.+. ++|+|+|++.||+++|..|+++||+|++..-+ ..+|..+ .++.+++.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~---------~ssY~~~-~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVC---------ISSYDHD-NQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEE---------EEEECCC-cCCcEEEe
Confidence 3567888888999999888754 48999999999999999999999999641111 1123211 22334454
Q ss_pred ecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc--cCcceEE
Q 024917 183 VGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA--CFSSYIL 237 (260)
Q Consensus 183 ~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~--~~~e~~~ 237 (260)
.+...+|++||||||+++||.|+.++.+++++ +.+++++.++. ...||..
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~~~~~~D~~~ 129 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPAGRPLVDTYV 129 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcCCCCCCCeEE
Confidence 55556999999999999999999999999975 57888888886 4456653
No 27
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.59 E-value=3.4e-14 Score=121.25 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=86.5
Q ss_pred ccCHHHHHHHHHHHHHHHhcC---CccEEEeecCchhhhHHHHHHHhCCCEE--EEecC-CCCCCceeeeeeeeccccee
Q 024917 105 LLDTKAFRDTIDLFVERYKDK---NISVVAGIEARGFIFGPPIALAIGAKFV--PMRKP-KKLPGEVISEEYSLEYGKDV 178 (260)
Q Consensus 105 l~dp~~~~~l~~~La~~i~~~---~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~-~kl~~~~~s~~y~~e~g~~~ 178 (260)
+.+.+.++..++.+++++.+. +.++|+|+..+|+++|..+++.|++|.. .++-. .. ... + ..+.-.
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~-~~~------~-~~~~~~ 73 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYG-NGM------Q-SSGDVK 73 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeecc-CCC------c-ccCceE
Confidence 345666666666666655431 4679999999999999999999998742 22211 00 000 0 001101
Q ss_pred EEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc-----CcceEEe
Q 024917 179 MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC-----FSSYILL 238 (260)
Q Consensus 179 lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~-----~~e~~~L 238 (260)
.........+|++||||||+++||+|+.++++.|++.|++.+.++++++++.. .+||+..
T Consensus 74 ~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~~~~~~pDy~g~ 138 (166)
T TIGR01203 74 ILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPSRRKVDVKVDFVGF 138 (166)
T ss_pred EecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCccCcCCCCCCEEEE
Confidence 11111223479999999999999999999999999999999999999999753 2566554
No 28
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.58 E-value=4.1e-14 Score=122.26 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=88.2
Q ss_pred hccCHHHHHHHHHHHHHHHhc---CCccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCceeeeeeeeccccee
Q 024917 104 LLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYGKDV 178 (260)
Q Consensus 104 ll~dp~~~~~l~~~La~~i~~---~~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~~s~~y~~e~g~~~ 178 (260)
++.+.+-+....+.++.++.+ .+.++|+++..+|+.+|..+|+.+|+|+. .+++.+.-.... . +.-.
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~-~-------~~~~ 86 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETT-G-------GELV 86 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCcc-C-------Ccee
Confidence 445566666655565555543 24579999999999999999999999852 232211100000 0 0011
Q ss_pred EEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCcc------CcceEEe
Q 024917 179 MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC------FSSYILL 238 (260)
Q Consensus 179 lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~------~~e~~~L 238 (260)
+.+......+|++|||||||++||+|+.++++.|+++|++.|.++++++++.. .+||+.+
T Consensus 87 ~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~~~~~~~~~pD~~g~ 152 (181)
T PRK09162 87 WKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDRKAKPLKADFVGL 152 (181)
T ss_pred EecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCcccccCCCCCcEEEE
Confidence 11111223589999999999999999999999999999999999999999752 3577665
No 29
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.54 E-value=1.8e-13 Score=119.30 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=86.4
Q ss_pred hhccCHHHHHHHHHHHHHHHhc---CCccEEEeecCchhhhHHHHHHHhCC---CEE--EEecCCCCCCceeeeeeeecc
Q 024917 103 TLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA---KFV--PMRKPKKLPGEVISEEYSLEY 174 (260)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~i~~---~~iDvVVgve~rG~~lA~~LA~~Lgv---p~v--~iRK~~kl~~~~~s~~y~~e~ 174 (260)
.++.+.+.++...+.++.++.+ ...++|+|+..||+++|..+++.+++ |+. ++|..... +. ..
T Consensus 9 ~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~-~~--------~~ 79 (189)
T PLN02238 9 KVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYG-GG--------TE 79 (189)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecC-CC--------cc
Confidence 4566666666666666655543 14589999999999999999999998 652 34432110 00 00
Q ss_pred cceeEEEEe---cccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 175 GKDVMEMHV---GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 175 g~~~lel~~---~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
.++...+.. ....+|++|||||||++||.|+..+++.|++.|++.+.++|+++++.
T Consensus 80 ~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 80 SSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred ccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 111233322 12358999999999999999999999999999999999999999986
No 30
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.50 E-value=7.6e-14 Score=120.96 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=78.5
Q ss_pred cCHHHHHHHHHHHHHHHhc---CCccEEEeec-------CchhhhHHHHHHHh----CC-CEEEEecCCCCCCceeeeee
Q 024917 106 LDTKAFRDTIDLFVERYKD---KNISVVAGIE-------ARGFIFGPPIALAI----GA-KFVPMRKPKKLPGEVISEEY 170 (260)
Q Consensus 106 ~dp~~~~~l~~~La~~i~~---~~iDvVVgve-------~rG~~lA~~LA~~L----gv-p~v~iRK~~kl~~~~~s~~y 170 (260)
.+.++.+.+++.++..+.. ..+|.|++++ .|||..+..+|+.+ ++ .-...|++. .++...+...
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~~~ 134 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKATL 134 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCHHH
Confidence 3555667777777765543 1368999987 49996666555554 43 112333333 2222222222
Q ss_pred eecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEE
Q 024917 171 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 226 (260)
Q Consensus 171 ~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlv 226 (260)
+..+-.+.|.+... ..+|++|||||||+|||+|+.++.+.|+++|++.|.++++.
T Consensus 135 R~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 135 RFLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 22333445665433 34799999999999999999999999999999999998874
No 31
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.48 E-value=8.9e-13 Score=114.04 Aligned_cols=126 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred hhccCHHHHHHHHHHHHHHH----hcC-CccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCceeeeeeeec-c
Q 024917 103 TLLLDTKAFRDTIDLFVERY----KDK-NISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLE-Y 174 (260)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~i----~~~-~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~~s~~y~~e-~ 174 (260)
.++.+.+.++...+.++.++ .+. +..+++|+..||++||..|++.|+.|.. +++.. +|..+ .
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s----------sY~~~~~ 75 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS----------SYGSGMS 75 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE----------EecCCCc
Confidence 45566666666555555544 321 2369999999999999999999999842 33321 11100 0
Q ss_pred cceeEEEEe--cccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc-----cCcceEEe
Q 024917 175 GKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA-----CFSSYILL 238 (260)
Q Consensus 175 g~~~lel~~--~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~-----~~~e~~~L 238 (260)
..+...+.. ....+|++|||||||+.||.|+.++.+.+++.|++.+.++++++++. ...||+++
T Consensus 76 ~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~~r~~~i~~DyvG~ 146 (178)
T PRK15423 76 TTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGF 146 (178)
T ss_pred ccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCCCCcCCCCCcEEEE
Confidence 111222222 22358999999999999999999999999999999999999999986 23466554
No 32
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.47 E-value=8e-14 Score=124.59 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=85.2
Q ss_pred cCHHHHHHHHHHHHHHHh--cCCccEEEeec-------CchhhhHHHHHHHhC----CCEEEEecCCCCCCceeeeeeee
Q 024917 106 LDTKAFRDTIDLFVERYK--DKNISVVAGIE-------ARGFIFGPPIALAIG----AKFVPMRKPKKLPGEVISEEYSL 172 (260)
Q Consensus 106 ~dp~~~~~l~~~La~~i~--~~~iDvVVgve-------~rG~~lA~~LA~~Lg----vp~v~iRK~~kl~~~~~s~~y~~ 172 (260)
.+.+..+.+++.+...+. ..++|.||+++ .|||..+..||+.++ .|+...|++...++...+...+.
T Consensus 89 ~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~rr 168 (225)
T COG1040 89 GDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALERR 168 (225)
T ss_pred CchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHHH
Confidence 456677778888887777 35799999996 699988888877775 44433333333233322222222
Q ss_pred cccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEec
Q 024917 173 EYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 173 e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
.+-++.|.+..+...+ ++|+|||||+|||+|+.++.++|++.|++.|.++++...
T Consensus 169 ~nl~~aF~~~~~~~~~-~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~ 223 (225)
T COG1040 169 RNLKGAFRLKKGIEEP-KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARA 223 (225)
T ss_pred HhccCCeecCCCCCCC-CeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEec
Confidence 2233456554443323 899999999999999999999999999999999988654
No 33
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.46 E-value=2.5e-12 Score=110.39 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=89.2
Q ss_pred hccCHHHHHHHHHHHHHHHhc----CCccEEEeecCchhhhHHHHHHHh----CCCE--EEEecCCCCCCceeeeeeeec
Q 024917 104 LLLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAI----GAKF--VPMRKPKKLPGEVISEEYSLE 173 (260)
Q Consensus 104 ll~dp~~~~~l~~~La~~i~~----~~iDvVVgve~rG~~lA~~LA~~L----gvp~--v~iRK~~kl~~~~~s~~y~~e 173 (260)
.+.+++.++...+.++.++.+ .+.++|+|+..||+++|..+++.| ++|+ .+++.. +|+.+
T Consensus 5 ~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~----------~y~~~ 74 (176)
T PRK05205 5 EILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDIT----------LYRDD 74 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEE----------EeecC
Confidence 456788888877788777654 246899999999999999999999 5442 222210 11100
Q ss_pred ---cccee-EE-EEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCC-CcEEEEEEEEecCc----cCcceEEeeeee
Q 024917 174 ---YGKDV-ME-MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQ-NHIFILICIQMLNA----CFSSYILLFSYA 242 (260)
Q Consensus 174 ---~g~~~-le-l~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~G-a~vV~~avlve~~~----~~~e~~~L~~~~ 242 (260)
.+... .. .....-.+|++|||||||++||+|+.++++.|++.| ++.+.++++++++. ...||++.=-.+
T Consensus 75 ~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~~~~~~~~~Dyvg~~ip~ 153 (176)
T PRK05205 75 LTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRGHRELPIRADYVGKNIPT 153 (176)
T ss_pred ccccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECCCCcCCCCCCEEEEECCC
Confidence 01000 10 000112489999999999999999999999999999 78999999999743 345776654333
No 34
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.42 E-value=3.8e-12 Score=115.03 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=93.5
Q ss_pred echhhccCHHHHHHHHHHHHHHHhc---CCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCC---ceee-eeeee
Q 024917 100 DITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG---EVIS-EEYSL 172 (260)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La~~i~~---~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~---~~~s-~~y~~ 172 (260)
++..++.+.+.++.-.+.||.++.+ .+..+|+|+..||++|+..|.+.++...-...+.-.++- .++. .+|.-
T Consensus 52 ~~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~ 131 (241)
T PTZ00149 52 YLTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCN 131 (241)
T ss_pred cccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccC
Confidence 3456677777777666666655543 245599999999999999999999731111000000111 2222 33432
Q ss_pred cccceeEEEEec--ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc-----cCcceEEe
Q 024917 173 EYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA-----CFSSYILL 238 (260)
Q Consensus 173 e~g~~~lel~~~--~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~-----~~~e~~~L 238 (260)
+...+.+.+... ...+|++|||||||++||.|+.++++.|++.|++.+.++++++++. ..+||+++
T Consensus 132 ~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~~r~~~i~pDYvGf 204 (241)
T PTZ00149 132 DESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRTPLSNGFKGDFVGF 204 (241)
T ss_pred CCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCccccCCCCCceEEE
Confidence 222233333322 2258999999999999999999999999999999999999999985 34577765
No 35
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.42 E-value=9.7e-13 Score=128.14 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCE--EEEecCCCCCCceeeeeeeecccceeEEEEe-cc
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GA 185 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~--v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~-~~ 185 (260)
+.-+.+++.|++.++. +.|+|++++..|++.|..+|+.+|+|+ .++||+. .....+....+......++.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~-~~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHY-VGRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeec-cccccCCHHHHHHhhheeEEeccccc
Confidence 3455789999988764 789999999999999999999999997 4566543 21111111111111112333332 23
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
..+||+||||||++|||+|+.+++++|+++||+.|.+++.
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~ 376 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIA 376 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 3589999999999999999999999999999998887554
No 36
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.42 E-value=5.3e-12 Score=112.08 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=86.1
Q ss_pred hccCHHHHHHHHHHHH----HHHhc-----CCccEEEeecCchhhhHHHHHHHhC---CCEEEEecCCCCCCceee-eee
Q 024917 104 LLLDTKAFRDTIDLFV----ERYKD-----KNISVVAGIEARGFIFGPPIALAIG---AKFVPMRKPKKLPGEVIS-EEY 170 (260)
Q Consensus 104 ll~dp~~~~~l~~~La----~~i~~-----~~iDvVVgve~rG~~lA~~LA~~Lg---vp~v~iRK~~kl~~~~~s-~~y 170 (260)
++.+.+.++...+.|| +.+.+ .+.++|+|+..||++||..|+++|+ +|+.+ .++. .+|
T Consensus 26 ~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~v---------dfi~vssY 96 (211)
T PTZ00271 26 TLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKV---------EFICASSY 96 (211)
T ss_pred EecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeE---------EEEEEEec
Confidence 4556665555444444 44432 2367999999999999999999996 55311 1111 122
Q ss_pred eec-ccceeEEEEec--ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCccC-----cceEEe
Q 024917 171 SLE-YGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACF-----SSYILL 238 (260)
Q Consensus 171 ~~e-~g~~~lel~~~--~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~~~-----~e~~~L 238 (260)
..+ ...+.+.+..+ .-.+||+|||||||+.||.||.++++.|++.|++.+.++++++++... .||+..
T Consensus 97 ~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~~r~~~i~~DyvG~ 172 (211)
T PTZ00271 97 GTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVEVLVDYPVI 172 (211)
T ss_pred CCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcccCCcCCCCCCEEEE
Confidence 111 11122333222 235899999999999999999999999999999999999999997633 566654
No 37
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.41 E-value=1.2e-12 Score=116.61 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=79.1
Q ss_pred cCHHHHHHHHHHHHHHHh------c-CCccEEEeec-------Cchhhh----HHHHHHHhCCCEE---EEecCCCCCCc
Q 024917 106 LDTKAFRDTIDLFVERYK------D-KNISVVAGIE-------ARGFIF----GPPIALAIGAKFV---PMRKPKKLPGE 164 (260)
Q Consensus 106 ~dp~~~~~l~~~La~~i~------~-~~iDvVVgve-------~rG~~l----A~~LA~~Lgvp~v---~iRK~~kl~~~ 164 (260)
.+.++.+.+++.+++.+. . ..+|.|++++ .|||.. |..+|+.+++|+. ..|.+...++.
T Consensus 85 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q~ 164 (227)
T PRK11595 85 RRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQH 164 (227)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCcc
Confidence 466677777877765432 1 2579999987 469955 5555566788763 33322221222
Q ss_pred eeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 165 VISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 165 ~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
..+...+..+-.+.+.+. +. .+|++|||||||+|||+|+.++++.|+++|++.|.++++..
T Consensus 165 ~l~~~~R~~n~~~~f~~~-~~-~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 165 FLSARLRKRNLKNAFRLE-LP-VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred cCCHHHHhhhhhhhhccC-CC-CCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 222222222223334432 22 48999999999999999999999999999999999988854
No 38
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.39 E-value=2.7e-12 Score=118.27 Aligned_cols=98 Identities=24% Similarity=0.391 Sum_probs=74.7
Q ss_pred HHHHHHHhc-CCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEe-cccCCCCeEE
Q 024917 116 DLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAVQAGERAL 193 (260)
Q Consensus 116 ~~La~~i~~-~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~-~~i~~GkrVL 193 (260)
+.+++++.. .+..+|++++.+|+.+|..+|+.+|+|+.+++|.+..+.. .++.. ....+|++|+
T Consensus 143 ~~la~~i~~~~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~--------------~~~~~~~~~v~Gk~Vl 208 (285)
T PRK00934 143 PLIAEYIGDKLDDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTE--------------VEIAPKNLDVKGKDVL 208 (285)
T ss_pred HHHHHHHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCe--------------EEEeccccccCCCEEE
Confidence 344444432 2334999999999999999999999999888876531111 11111 1124899999
Q ss_pred EEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 194 IVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 194 IVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
||||+++||+|+.++++.|++.|++.+.++++..
T Consensus 209 IVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~ 242 (285)
T PRK00934 209 IVDDIISTGGTMATAIKILKEQGAKKVYVACVHP 242 (285)
T ss_pred EEcCccccHHHHHHHHHHHHHCCCCEEEEEEEee
Confidence 9999999999999999999999999999988754
No 39
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.38 E-value=4.3e-12 Score=117.95 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=72.0
Q ss_pred CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHH
Q 024917 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205 (260)
Q Consensus 126 ~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl 205 (260)
+-++|++++.+|..++..+|+.+|+|+.+++|.++-.+. ..+....+...+|++|+||||+++||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~------------~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRD------------VEISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEEeccCcccCCCEEEEEecccCcHHHH
Confidence 346999999999999999999999999888876531111 00111112334899999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEEEec
Q 024917 206 SAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 206 ~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
..+++.|++.||+.+.+++....
T Consensus 228 ~~aa~~Lk~~GA~~V~~~~tHgv 250 (301)
T PRK07199 228 IEAARQLRAAGAASPDCVVVHAL 250 (301)
T ss_pred HHHHHHHHHCCCcEEEEEEEeee
Confidence 99999999999999998886543
No 40
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.36 E-value=2.3e-12 Score=126.36 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCcee--eeeeeecccceeEEEEec
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVI--SEEYSLEYGKDVMEMHVG 184 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~~--s~~y~~e~g~~~lel~~~ 184 (260)
+.-..+++.|++... .++|+|++++..|.++|..+|+.+|+|+. .+|++. ...... +...+...-+..|....
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~-~~rt~~~~~~~~R~~~v~~~f~~~~- 343 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRY-VGRTFIQPSQELREQGVKMKLSAVR- 343 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEcc-CCCCCcCCCHHHHHHHHhcceeccc-
Confidence 345579999998765 37999999999999999999999999985 333322 111111 11111111223344333
Q ss_pred ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEE
Q 024917 185 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 185 ~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~av 224 (260)
...+||+|+||||++|||+|+++++++|+++||+.|.+.+
T Consensus 344 ~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i 383 (471)
T PRK06781 344 GVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRI 383 (471)
T ss_pred cccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEE
Confidence 3458999999999999999999999999999999988643
No 41
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.34 E-value=3.2e-12 Score=126.15 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCcee--eeeeeecccceeEEEEecccC
Q 024917 112 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVI--SEEYSLEYGKDVMEMHVGAVQ 187 (260)
Q Consensus 112 ~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~~--s~~y~~e~g~~~lel~~~~i~ 187 (260)
+.+++.+.+.+...+.|+|++++..|..+|..+|+.+|+|+. .+|++.. ....+ +...+...-+..|.... ...
T Consensus 279 ~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~-~rt~i~~~q~~R~~~vr~~f~~~~-~~v 356 (501)
T PRK09246 279 EKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYV-GRTFIMPGQAQRKKSVRQKLNAIR-AEF 356 (501)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecc-cccccCcCHHHHHHHHHhhcCCcc-ccc
Confidence 344444444444345799999999999999999999999984 2332221 00111 11111111112232222 235
Q ss_pred CCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 188 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
+||+||||||++|||+|+.+++++|+++||+.|.++++
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASA 394 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEE
Confidence 89999999999999999999999999999999998877
No 42
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.34 E-value=1.4e-11 Score=115.46 Aligned_cols=90 Identities=19% Similarity=0.324 Sum_probs=70.3
Q ss_pred cEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHH
Q 024917 128 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~a 207 (260)
.+||+++.+|..+|..+|+.+|+|+.+.+|+++.... .....+.+ .+. .+|++|||||||++||+|+.+
T Consensus 167 ~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~---------~~~~~~~~-~gd-v~Gr~viIVDDIidTG~Tl~~ 235 (320)
T PRK02269 167 VVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKM---------NTSEVMNI-IGN-VKGKKCILIDDMIDTAGTICH 235 (320)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCC---------ceeEEEEe-ccc-cCCCEEEEEeeecCcHHHHHH
Confidence 4899999999999999999999999888875431000 00111222 133 389999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEEEec
Q 024917 208 AIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 208 a~~LL~~~Ga~vV~~avlve~ 228 (260)
+++.|++.||+.|.++|....
T Consensus 236 aa~~Lk~~GA~~V~~~~tHgl 256 (320)
T PRK02269 236 AADALAEAGATEVYASCTHPV 256 (320)
T ss_pred HHHHHHHCCCCEEEEEEECcc
Confidence 999999999999998776433
No 43
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.34 E-value=3.6e-12 Score=125.70 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCceeee-eeeecccceeEEEE-ec
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISE-EYSLEYGKDVMEMH-VG 184 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~~s~-~y~~e~g~~~lel~-~~ 184 (260)
+.-..+++.|++... .++|+|++++..|+++|..+|+.+|+|+. .+|++.. +.++.. ........-++.+. ..
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~--grtfi~p~q~~R~~~~~~kl~~~~ 372 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYV--GRTFIQPTQSMRESGIRMKLNPLK 372 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEecc--CccccCCCHHHHHhhhheeeeccc
Confidence 344578888886654 47999999999999999999999999985 3333221 111100 00000000011211 12
Q ss_pred ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEE
Q 024917 185 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 223 (260)
Q Consensus 185 ~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~a 223 (260)
...+||+||||||++|||+|+.+++++|+++||+.|++.
T Consensus 373 ~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 373 DVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred cccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 334899999999999999999999999999999998764
No 44
>PLN02440 amidophosphoribosyltransferase
Probab=99.33 E-value=8.7e-12 Score=122.53 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCce-eeeeeeecccceeEEEEe-cc
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEV-ISEEYSLEYGKDVMEMHV-GA 185 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~-~s~~y~~e~g~~~lel~~-~~ 185 (260)
.-..+++.|++.+.. ++|+|++++..|+++|..+|+.+|+|+. ++|.+.. +.+ +...........++.+.. ..
T Consensus 260 ~r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~--~rt~i~~~q~~r~~~~~~k~~~~~~ 336 (479)
T PLN02440 260 SRLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYV--GRTFIEPSQKIRDFSVKLKLNPVRS 336 (479)
T ss_pred HHHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeec--cccccCcchhhhhhhheeeeecccc
Confidence 334678888887754 7999999999999999999999999984 3443221 111 110000000111122211 12
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 226 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlv 226 (260)
..+||+||||||++|||+|+++++++|+++||+.|.++++.
T Consensus 337 ~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 337 VLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred cccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 35899999999999999999999999999999999988875
No 45
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.33 E-value=1.4e-11 Score=114.86 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=71.0
Q ss_pred CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHH
Q 024917 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205 (260)
Q Consensus 126 ~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl 205 (260)
+..+|++++.||+.+|..+|+.+|+|+.+++|.++.++. ...+.+. +. .+|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~-----------~~~~~~~-~~-~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV-----------SEVMNII-GD-VEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee-----------EEEEeec-cc-CCCCEEEEEecccCcHHHH
Confidence 456999999999999999999999999888876542111 0112221 23 4899999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEE
Q 024917 206 SAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 206 ~aa~~LL~~~Ga~vV~~avl 225 (260)
.++++.|++.|++.+.+++.
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~t 244 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYAT 244 (309)
T ss_pred HHHHHHHHccCCCEEEEEEE
Confidence 99999999999999998885
No 46
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.32 E-value=3.6e-12 Score=124.01 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE--EecCCCCCCcee-e--eeeeecccceeEEEEec
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVI-S--EEYSLEYGKDVMEMHVG 184 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~--iRK~~kl~~~~~-s--~~y~~e~g~~~lel~~~ 184 (260)
.-..+++.|+++.+. ++|+|++++..|+.+|..+|+.+|+|+.. .|++. .+.++ . ...+.......+....
T Consensus 258 ~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~--~~r~~i~~~q~~R~~~v~~k~~~~~- 333 (442)
T TIGR01134 258 ARKRMGEKLARESPV-EADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRY--VGRTFIMPTQELRELSVRLKLNPIR- 333 (442)
T ss_pred HHHHHHHHHHHhcCC-CCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEecc--ccccccCCCHHHHHHHHhhhccccc-
Confidence 444788889887653 78999999999999999999999999852 33221 11111 1 0000011111222111
Q ss_pred ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 185 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 185 ~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
...+||+||||||++|||+|+++++++|+++|++.|++.+.
T Consensus 334 ~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 23489999999999999999999999999999999997554
No 47
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.31 E-value=1.3e-11 Score=121.10 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE--EecCCCCCCceeeeeeeecccceeEEEEe-cccCC
Q 024917 112 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAVQA 188 (260)
Q Consensus 112 ~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~--iRK~~kl~~~~~s~~y~~e~g~~~lel~~-~~i~~ 188 (260)
..+++.|++..+. +.|+|++++..|.++|..+|+.+|+|+.. .|.+.. ....+...........++.+.. ....+
T Consensus 275 ~~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~-~rtfi~~~q~~R~~~~~~k~~~~~~~v~ 352 (469)
T PRK05793 275 VRAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYV-GRTFIAPSQELRERAVRVKLNPLKVNVE 352 (469)
T ss_pred HHHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeec-cccccChhHhhhhhhheEecccCccccC
Confidence 3799999988754 68999999999999999999999999853 333211 0011110000000011222211 12348
Q ss_pred CCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 189 GERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 189 GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
||+|+||||+++||+|+.+++++|+++||+.|.+++.
T Consensus 353 gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~ 389 (469)
T PRK05793 353 GKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVS 389 (469)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEE
Confidence 9999999999999999999999999999999887554
No 48
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.30 E-value=6e-12 Score=123.75 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE-EecCCCCCCcee--eeeeeecccceeEEEEeccc
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI--SEEYSLEYGKDVMEMHVGAV 186 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~-iRK~~kl~~~~~--s~~y~~e~g~~~lel~~~~i 186 (260)
..+.+++.|++.+.. ++|+|++++..|.++|..+|+.+|+|+.. ..|.+......+ +...+...-+..|... ...
T Consensus 270 ~R~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~-~~~ 347 (484)
T PRK07272 270 ARKRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAV-SGV 347 (484)
T ss_pred HHHHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCcccc-ccc
Confidence 346788888877654 58999999999999999999999999842 222211111111 1111111112234322 234
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
.+|++|+||||++|||+|+.+++++|+++|++.|++++.
T Consensus 348 ~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 348 VKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 589999999999999999999999999999999999888
No 49
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.29 E-value=1.3e-11 Score=120.15 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE-EecCCCCCCceeeeeeeecccceeEEEEe-ccc
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAV 186 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~-iRK~~kl~~~~~s~~y~~e~g~~~lel~~-~~i 186 (260)
+.-..+++.|++... .++|+|++++..|..+|..+|+.+|+|+.. +.|.+-.....+....+ + ..-.+.+.. ...
T Consensus 255 ~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr-~-~~~~~k~~~~~~~ 331 (442)
T PRK08341 255 SARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGR-E-LKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCch-h-hhheeeecccccc
Confidence 344578999988765 368999999999999999999999999853 33322111111111000 0 000122111 233
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEE
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~av 224 (260)
.+||+||||||+++||+|+.+++++|+++||+.|.+.+
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 48999999999999999999999999999999998765
No 50
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.29 E-value=2.8e-11 Score=118.93 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEE--EEecCCCCCCcee-eeeeeecccceeEEEEe--
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVI-SEEYSLEYGKDVMEMHV-- 183 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v--~iRK~~kl~~~~~-s~~y~~e~g~~~lel~~-- 183 (260)
++-+.+++.|++.... ++|+|++++..|+++|..+|+.+|+|+. ++|++.. +.++ .... ......+.+..
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~--grt~i~~~q--~~r~~~v~~k~~~ 353 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYV--GRTFIQPTQ--QIRNLGVKLKHNA 353 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeec--Ccccccccc--ccccccEEEEecc
Confidence 4566788888887654 7999999999999999999999999985 4554221 1111 1000 00111222222
Q ss_pred -cccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 184 -GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 184 -~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
....+||+||||||+++||+|+.++++.|+++|++.|.+++.
T Consensus 354 ~~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~ 396 (479)
T PRK09123 354 NRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIA 396 (479)
T ss_pred cccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEc
Confidence 233589999999999999999999999999999999998664
No 51
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.28 E-value=3.7e-11 Score=112.61 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=69.4
Q ss_pred cEEEeecCchhhhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHH
Q 024917 128 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lg-vp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~ 206 (260)
-+||+++.+|..+|..+|+.++ +|+.++.|.+..... ...+.+ .+. .+|++|+|||||++||+|+.
T Consensus 168 ~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~-----------~~~~~~-~gd-v~Gr~viIVDDIidTG~Tl~ 234 (319)
T PRK04923 168 LIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANV-----------ATVMNI-IGD-VQGKTCVLVDDLVDTAGTLC 234 (319)
T ss_pred CEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCc-----------eEEEec-ccC-CCCCEEEEEecccCchHHHH
Confidence 4999999999999999999998 899988886642110 011111 133 48999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEEE
Q 024917 207 AAIRLLGSFQNHIFILICIQ 226 (260)
Q Consensus 207 aa~~LL~~~Ga~vV~~avlv 226 (260)
++++.|++.||..|.++|..
T Consensus 235 ~aa~~Lk~~GA~~V~~~~TH 254 (319)
T PRK04923 235 AAAAALKQRGALKVVAYITH 254 (319)
T ss_pred HHHHHHHHCCCCEEEEEEEC
Confidence 99999999999999887653
No 52
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.28 E-value=4.2e-11 Score=112.83 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=69.2
Q ss_pred EEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHHH
Q 024917 129 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAA 208 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa 208 (260)
+||+++.+|...|..+|+.+|+|+.+++|.+..... ...+.+. +. .+|++|+||||+++||+|+.++
T Consensus 171 vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~-----------~~~~~~~-gd-v~Gk~VIIVDDIi~TG~Tl~~a 237 (332)
T PRK00553 171 VVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNV-----------AESINVL-GE-VKNKNCLIVDDMIDTGGTVIAA 237 (332)
T ss_pred EEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcce-----------EeeEEee-cc-CCCCEEEEEeccccchHHHHHH
Confidence 999999999999999999999999988886542110 1112221 33 4899999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEE
Q 024917 209 IRLLGSFQNHIFILICI 225 (260)
Q Consensus 209 ~~LL~~~Ga~vV~~avl 225 (260)
++.|++.||+.+.+++.
T Consensus 238 a~~Lk~~GA~~V~~~at 254 (332)
T PRK00553 238 AKLLKKQKAKKVCVMAT 254 (332)
T ss_pred HHHHHHcCCcEEEEEEE
Confidence 99999999999998874
No 53
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.28 E-value=1.1e-10 Score=100.50 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=90.3
Q ss_pred echhhccCHHHHHHHHHHHH----HHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE--EecCCCCCCceeeeeeeec
Q 024917 100 DITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLE 173 (260)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La----~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~--iRK~~kl~~~~~s~~y~~e 173 (260)
++..++.+.+.++.-.++++ +.+.+ +.-+++|+-.|+++|+.-|.++++.|.-+ +-- .+|--+
T Consensus 6 ~~~evLisee~I~~ri~ela~~I~~~y~g-~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~v----------SSYg~~ 74 (178)
T COG0634 6 HIKEVLISEEQIKARIKELAAQITEDYGG-KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHV----------SSYGGG 74 (178)
T ss_pred ccceEeeCHHHHHHHHHHHHHHHHHhhCC-CceEEEEEcccchhhHHHHHHhcCCCceeEEEEE----------eccCCC
Confidence 34456677766665444444 45554 34499999999999999999999987521 110 111101
Q ss_pred -ccceeEEEEec--ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc-----cCcceEEe
Q 024917 174 -YGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA-----CFSSYILL 238 (260)
Q Consensus 174 -~g~~~lel~~~--~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~-----~~~e~~~L 238 (260)
.+++.+++.++ .-.+|++|||||||+.||.||..+.++|+..||+.+.++++++++. ...||++.
T Consensus 75 t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r~~~i~~DyvGf 147 (178)
T COG0634 75 TSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIEADYVGF 147 (178)
T ss_pred cccCCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccccCCCCcceEee
Confidence 11222444443 3358999999999999999999999999999999999999999987 33456554
No 54
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.27 E-value=1.1e-11 Score=121.78 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE--EecCCCCCCceee--eeeeecccceeEEEEecc
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVIS--EEYSLEYGKDVMEMHVGA 185 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~--iRK~~kl~~~~~s--~~y~~e~g~~~lel~~~~ 185 (260)
.-..+++.|++... .++|+|++++..|.++|..+|+.+|+|+.. +|++.. ....+. ...+...-+..|.... .
T Consensus 268 ~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~-~Rt~i~~~~~~R~~nv~~~f~~~~-~ 344 (475)
T PRK07631 268 ARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYV-GRTFIQPSQALREQGVKMKLSPVR-G 344 (475)
T ss_pred HHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecC-CCCCcCCCHHHHHHHHhhhhhhcc-c
Confidence 44579999998765 478999999999999999999999999842 332221 111111 0111111112233222 3
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~av 224 (260)
..+||+||||||++|||+|+++++++|+++||+.|.+.+
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRI 383 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 358999999999999999999999999999999988643
No 55
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.25 E-value=4e-11 Score=117.75 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE--EecCCCCCCceeeeeeeecccceeEEEEe---c
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV---G 184 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~--iRK~~kl~~~~~s~~y~~e~g~~~lel~~---~ 184 (260)
.-..+++.|++... .+.|+|++++..|+..|..+|+.+|+|+.. .|.+.. ..+...... +.....+.+.- .
T Consensus 276 ~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~-~r~fi~~~q--~~R~~~~~~kl~~~~ 351 (474)
T PRK06388 276 ARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYS-ERTFIMPTQ--SDRKAAIKLKLNPIR 351 (474)
T ss_pred HHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEeccc-CCcccCCch--hhhhhceeEEecccc
Confidence 34478999988764 478999999999999999999999999842 332221 111111000 00111122221 2
Q ss_pred ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEE
Q 024917 185 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 223 (260)
Q Consensus 185 ~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~a 223 (260)
...+||+||||||++|||+|+++++++|+++||+.|.+.
T Consensus 352 ~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~r 390 (474)
T PRK06388 352 EVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVR 390 (474)
T ss_pred ccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEE
Confidence 234899999999999999999999999999999998864
No 56
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.24 E-value=4e-11 Score=105.06 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=84.6
Q ss_pred hccCHHHHHHHHHHHHHHHh--cCCccEEEeecCchhhhHHHHHHHhCC-CEEEEecCCCCCCceeeeeeeecccc-eeE
Q 024917 104 LLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGA-KFVPMRKPKKLPGEVISEEYSLEYGK-DVM 179 (260)
Q Consensus 104 ll~dp~~~~~l~~~La~~i~--~~~iDvVVgve~rG~~lA~~LA~~Lgv-p~v~iRK~~kl~~~~~s~~y~~e~g~-~~l 179 (260)
.+.+.+-++.++..+|+++. +.+||+|+++..||+.+|..|+..||+ |+..+.-. .|...... ...
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~----------~y~~~~~~~~~~ 74 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVE----------HYDETAERDGEA 74 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEE----------EehhhcccCCcc
Confidence 34667888999999999997 368999999999999999999999998 44333211 11111000 111
Q ss_pred EEEec---ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 180 EMHVG---AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 180 el~~~---~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
.+... ....|+||||||||..||.||..+.+.|++.....+.++++-.+..
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~~~~~ 128 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQYKKS 128 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhhhcccC
Confidence 22211 1158999999999999999999999999997666666666655543
No 57
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.24 E-value=7.5e-11 Score=109.78 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCe
Q 024917 112 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 191 (260)
Q Consensus 112 ~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~Gkr 191 (260)
..+++++.+.. .+.++|++++.+|+.+|..+|+.+|+|+.+++|.+..+.. .... .......+|++
T Consensus 147 ~~l~~~i~~~~--~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~-----------~~~~-~~~~~~v~g~~ 212 (308)
T TIGR01251 147 PVLAEYLKKKI--LDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATN-----------EVEV-MNLVGDVEGKD 212 (308)
T ss_pred HHHHHHHHhhC--CCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCC-----------EEEE-EecccccCCCE
Confidence 34444444432 2456999999999999999999999999988876542111 0000 11112248999
Q ss_pred EEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 192 ALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 192 VLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
|+||||+++||+|+.++++.|++.|++.+.+++...
T Consensus 213 vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~ 248 (308)
T TIGR01251 213 VVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHG 248 (308)
T ss_pred EEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEee
Confidence 999999999999999999999999999999888653
No 58
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.24 E-value=4.3e-11 Score=118.37 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE-EecCCCCCCcee-eeeeeecccceeEEEEe-cc
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI-SEEYSLEYGKDVMEMHV-GA 185 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~-iRK~~kl~~~~~-s~~y~~e~g~~~lel~~-~~ 185 (260)
+.-..+++.|++..+ .+.|+|++++.+|+..|..+|+.+|+|+.. ..|.+.. +.++ ..........-++.+.. ..
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~-grtfi~~~q~~r~~~~r~k~~~~~~ 363 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYV-GRTFIQPSQTIRQLGIRLKLNPLRE 363 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeeccc-ccCccCcchhhhhhceeeecCcccc
Confidence 345579999998765 478999999999999999999999999843 2232111 1111 00000000001122110 23
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 223 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~a 223 (260)
..+||+||||||++|||+|+.+++++|+++|++.|.+.
T Consensus 364 ~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~r 401 (510)
T PRK07847 364 VIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVR 401 (510)
T ss_pred ccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 35899999999999999999999999999999988754
No 59
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.23 E-value=1e-10 Score=108.99 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccce-eEEEEecccCCCC
Q 024917 113 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKD-VMEMHVGAVQAGE 190 (260)
Q Consensus 113 ~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lg-vp~v~iRK~~kl~~~~~s~~y~~e~g~~-~lel~~~~i~~Gk 190 (260)
.+++.+.+.+...+ -+||+++.+|+.+|..+|+.++ +|+.+++|.+.-... +.. ...+ .+. .+|+
T Consensus 136 ~la~~i~~~~~~~~-~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~----------~~~~~~~~-~~d-v~gr 202 (304)
T PRK03092 136 LLADYVRDKYDLDN-VTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP----------NQVVANRV-VGD-VEGR 202 (304)
T ss_pred HHHHHHHHhcCCCC-cEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC----------CceEEEec-CcC-CCCC
Confidence 34444444433223 3999999999999999999999 999888875531000 000 1111 123 4899
Q ss_pred eEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 191 RALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 191 rVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
+|+||||+++||+|+.++++.|++.|++.+.+++.
T Consensus 203 ~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~t 237 (304)
T PRK03092 203 TCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAAT 237 (304)
T ss_pred EEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99999999999999999999999999999998883
No 60
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=108.80 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=69.9
Q ss_pred cEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHH
Q 024917 128 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~a 207 (260)
-+||+++.||...|..+|..||.|+.++.|++- +.+... ......+.+ +||+|+||||+++||+|+..
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~~~~v----------~~~~~~gdV-~gk~~iiVDDiIdTgGTi~~ 232 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SSPNVV----------EVMNLIGDV-EGKDVVIVDDIIDTGGTIAK 232 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CCCCeE----------EEeeccccc-CCCEEEEEeccccccHHHHH
Confidence 599999999999999999999999988888763 111100 011112344 89999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEEE
Q 024917 208 AIRLLGSFQNHIFILICIQ 226 (260)
Q Consensus 208 a~~LL~~~Ga~vV~~avlv 226 (260)
++++|++.||+.|.++|..
T Consensus 233 Aa~~Lk~~GAk~V~a~~tH 251 (314)
T COG0462 233 AAKALKERGAKKVYAAATH 251 (314)
T ss_pred HHHHHHHCCCCeEEEEEEc
Confidence 9999999999999987763
No 61
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.20 E-value=2.1e-10 Score=109.93 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=73.9
Q ss_pred CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeeccccee-EEEE-ecccCCCCeEEEEeeeccchH
Q 024917 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMH-VGAVQAGERALIVDDLVATGG 203 (260)
Q Consensus 126 ~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~-lel~-~~~i~~GkrVLIVDDVltTG~ 203 (260)
+..+||+++.+|...|..+|..+|+|+.+++|.+...... .+... ..+. .+...+|++|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 3459999999999999999999999999998876421110 01111 1111 131348999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEEEec
Q 024917 204 TLSAAIRLLGSFQNHIFILICIQML 228 (260)
Q Consensus 204 Tl~aa~~LL~~~Ga~vV~~avlve~ 228 (260)
|+..+++.|++.|++.+.+++....
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~v 303 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGF 303 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeec
Confidence 9999999999999999999888765
No 62
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.17 E-value=2.6e-10 Score=107.09 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=67.6
Q ss_pred cEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHH
Q 024917 128 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~a 207 (260)
-+||+++.+|..+|..+|+.+|+|+.+++|.+... + .. ...+ .+. .+|++|+|||||++||+|+.+
T Consensus 171 ~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~-------~----~~-~~~i-~gd-V~gk~viIVDDIidTG~Tl~~ 236 (323)
T PRK02458 171 VVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDS-------E----RE-EGYI-IGD-VAGKKAILIDDILNTGKTFAE 236 (323)
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCC-------c----ce-eecc-ccc-cCCCEEEEEcceeCcHHHHHH
Confidence 38999999999999999999999998777643210 0 00 0011 133 489999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEEE
Q 024917 208 AIRLLGSFQNHIFILICIQ 226 (260)
Q Consensus 208 a~~LL~~~Ga~vV~~avlv 226 (260)
+++.|++.||+.|.++|..
T Consensus 237 aa~~Lk~~GA~~V~~~~tH 255 (323)
T PRK02458 237 AAKIVEREGATEIYAVASH 255 (323)
T ss_pred HHHHHHhCCCCcEEEEEEC
Confidence 9999999999999887764
No 63
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.12 E-value=6.5e-10 Score=103.47 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=67.4
Q ss_pred EEEeecCchhhhHHHHHHHh-CCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHH
Q 024917 129 VVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~L-gvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~a 207 (260)
+|++++.+|..+|..+++.+ ++|+.+++|.++-... ...+.+ .+. .+|++|+||||+++||+|+.+
T Consensus 154 vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-----------~~~~~~-~~~-v~g~~viivDDii~TG~Tl~~ 220 (302)
T PLN02369 154 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNL-IGD-VKGKVAIMVDDMIDTAGTITK 220 (302)
T ss_pred EEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-----------eeeEec-CCC-CCCCEEEEEcCcccchHHHHH
Confidence 89999999999999999999 7999888886541110 011111 123 379999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEE
Q 024917 208 AIRLLGSFQNHIFILIC 224 (260)
Q Consensus 208 a~~LL~~~Ga~vV~~av 224 (260)
+++.|++.|++.+.+++
T Consensus 221 a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 221 GAALLHQEGAREVYACA 237 (302)
T ss_pred HHHHHHhCCCCEEEEEE
Confidence 99999999999999887
No 64
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.09 E-value=8.6e-10 Score=103.90 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=68.0
Q ss_pred cEEEeecCchhhhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHH
Q 024917 128 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lg-vp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~ 206 (260)
.+||+++.+|..+|..+|+.++ +|+.+++|+++.... ...+.+. +. .+|++|+||||+++||+|+.
T Consensus 181 ~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-----------~~~~~~~-~~-v~g~~viiVDDii~TG~T~~ 247 (330)
T PRK02812 181 IVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----------AEVLNVI-GD-VKGKTAILVDDMIDTGGTIC 247 (330)
T ss_pred eEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-----------eeeEecc-cc-CCCCEEEEEccccCcHHHHH
Confidence 4999999999999999999995 899888876541100 0111111 23 48999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEE
Q 024917 207 AAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 207 aa~~LL~~~Ga~vV~~avl 225 (260)
++++.|++.|++.+.+++.
T Consensus 248 ~a~~~L~~~Ga~~v~~~~t 266 (330)
T PRK02812 248 EGARLLRKEGAKQVYACAT 266 (330)
T ss_pred HHHHHHhccCCCeEEEEEE
Confidence 9999999999999998873
No 65
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.07 E-value=1.4e-09 Score=92.89 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=82.2
Q ss_pred ccCHHHHHH----HHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhC------CCEEEEecCCCCCCceeeeeeeecc
Q 024917 105 LLDTKAFRD----TIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEY 174 (260)
Q Consensus 105 l~dp~~~~~----l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lg------vp~v~iRK~~kl~~~~~s~~y~~e~ 174 (260)
+.|++.++. ++.++.++-+..+--+++|+.+||+++|..+++.++ +|+-.+- -.-|+.+.
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lD----------It~yRDDl 75 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELD----------ITLYRDDL 75 (179)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEE----------eEEeechh
Confidence 456666664 444444544433333899999999999999999974 3432110 01111111
Q ss_pred ccee-EE--EEe---cccCCCCeEEEEeeeccchHHHHHHHHHHHhCC-CcEEEEEEEEecCc----cCcceEEe
Q 024917 175 GKDV-ME--MHV---GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQ-NHIFILICIQMLNA----CFSSYILL 238 (260)
Q Consensus 175 g~~~-le--l~~---~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~G-a~vV~~avlve~~~----~~~e~~~L 238 (260)
.... +. .+. ..-..||+|+|||||+.||.|++||++.|...| +..+..+|+++++. ..+||++-
T Consensus 76 ~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGHRELPIRaDyVGK 150 (179)
T COG2065 76 TQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGHRELPIRADYVGK 150 (179)
T ss_pred hhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCCccCCcccccccC
Confidence 1000 00 000 111489999999999999999999999999998 68999999999997 55677764
No 66
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.06 E-value=1.4e-09 Score=102.34 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHHHHHhcC---CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCe
Q 024917 115 IDLFVERYKDK---NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 191 (260)
Q Consensus 115 ~~~La~~i~~~---~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~Gkr 191 (260)
...+++++.+. +-.+||+++.+|...+..++ +++|+.+++|.+. + .....+......+|++
T Consensus 169 ~~~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--g------------~~~~~~~~~~dv~gr~ 232 (326)
T PLN02297 169 IPLLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--G------------DKRIVRIKEGNPAGRH 232 (326)
T ss_pred HHHHHHHHHhccccCCcEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--C------------CceEEEecccccCCCe
Confidence 34455555322 23499999999998877766 6899998888653 1 1111122222348999
Q ss_pred EEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 192 ALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 192 VLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
|+|||||++||+|+..+++.|++.|++.+.+++...
T Consensus 233 vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THg 268 (326)
T PLN02297 233 VVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHG 268 (326)
T ss_pred EEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECc
Confidence 999999999999999999999999999999887643
No 67
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.97 E-value=4.8e-09 Score=101.97 Aligned_cols=85 Identities=24% Similarity=0.351 Sum_probs=68.2
Q ss_pred cEEEeecCchhhhHHHHHHHhC------CCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc
Q 024917 128 SVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT 201 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lg------vp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT 201 (260)
.+||+++.+|...|..+|..|+ +++.++.|.+.-++++. .+.+ .+.+ +|+.|+||||+++|
T Consensus 281 pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-----------~~~l-vgdV-~Gk~vIIVDDIIdT 347 (439)
T PTZ00145 281 PVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIE-----------KMDL-VGNV-YDSDVIIVDDMIDT 347 (439)
T ss_pred cEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceE-----------EEec-cCCC-CCCEEEEEcceeCc
Confidence 4899999999999999999998 78888777654222110 1222 1334 89999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 202 GGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 202 G~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
|+|+.++++.|++.||..|.+++.
T Consensus 348 G~Tl~~aa~~Lk~~GA~~V~~~~T 371 (439)
T PTZ00145 348 SGTLCEAAKQLKKHGARRVFAFAT 371 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEE
Confidence 999999999999999999998874
No 68
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.95 E-value=6.2e-09 Score=92.11 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCE--EEEecCCCC-----------CCceeeeeeeeccc
Q 024917 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKL-----------PGEVISEEYSLEYG 175 (260)
Q Consensus 109 ~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~--v~iRK~~kl-----------~~~~~s~~y~~e~g 175 (260)
++-+.+++.|+..-. .+.-.|++++.+|++.|..+|+.||.|+ +++||-+-. ++....-.|...++
T Consensus 9 dAGr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~ 87 (220)
T COG1926 9 DAGRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRS 87 (220)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhh
Confidence 455556666554321 2334899999999999999999999997 678884421 11101001111000
Q ss_pred --------c-----eeEEE-------Ee-c--ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc--
Q 024917 176 --------K-----DVMEM-------HV-G--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA-- 230 (260)
Q Consensus 176 --------~-----~~lel-------~~-~--~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~-- 230 (260)
. ..-|+ .. . .-.+|+.|+||||-++||+||.++++.+++.|++.+.+++-+.-..
T Consensus 88 ~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~ 167 (220)
T COG1926 88 LGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAA 167 (220)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHH
Confidence 0 00011 11 1 1258999999999999999999999999999999999888776543
Q ss_pred -----cCcceEEeeeee-----ccCceeeeee
Q 024917 231 -----CFSSYILLFSYA-----TNGFTQFTIT 252 (260)
Q Consensus 231 -----~~~e~~~L~~~~-----~~~~~~~~~~ 252 (260)
..++.+++.... ...|+.|..+
T Consensus 168 ~~l~s~~D~vvc~~~P~~F~AVg~~Y~dF~q~ 199 (220)
T COG1926 168 AELESEADEVVCLYMPAPFEAVGEFYRDFRQV 199 (220)
T ss_pred HHHHhhcCeEEEEcCCccHHHHHHHHHHHhhc
Confidence 445666665443 4455555543
No 69
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.85 E-value=5.4e-09 Score=101.30 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE-EecCCCCCCcee-eeeeeecccceeEEEEe---c
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI-SEEYSLEYGKDVMEMHV---G 184 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~-iRK~~kl~~~~~-s~~y~~e~g~~~lel~~---~ 184 (260)
+-..+++.|+++..- +.|+|++++-.|.+.|...|+++|+|+.. .-|.+ ..+.|+ .-.. +.....+.++- .
T Consensus 268 ~R~~mG~~La~e~~~-eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNr-YvgRTFI~P~q--~~R~~~Vr~KLnpvr 343 (470)
T COG0034 268 ARKRMGEKLAEEIPV-EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNR-YVGRTFIMPTQ--ELREKGVRLKLNPVR 343 (470)
T ss_pred HHHHHHHHHHHhCCc-cccEEEecCCCChHHHHHHHHHhCCchhhcccccc-ccceeeeCCcH--HHHHhhhhhhcCchH
Confidence 445799999988764 67999999999999999999999999842 11221 112222 1000 00111122221 2
Q ss_pred ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEE
Q 024917 185 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 185 ~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~av 224 (260)
...+||||+||||-+-.|.|++..+++|+++||+.|.+.+
T Consensus 344 ~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 344 EVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred HHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEe
Confidence 4469999999999999999999999999999999999754
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.81 E-value=3.1e-08 Score=87.42 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred EEEeecCchhhhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHH
Q 024917 129 VVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~Lg-vp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~a 207 (260)
++|++..+|++++..+++.++ +++-.+.+.+.. .+. +.......-..-.+|++||||||+++||+|+.+
T Consensus 73 vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~t~--------~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ 142 (209)
T PRK00129 73 VIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--ETL--------EPVEYYVKLPEDIDERTVIVVDPMLATGGSAIA 142 (209)
T ss_pred EEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--CCC--------CCEEEEeeCCCcCCCCEEEEECCcccchHHHHH
Confidence 888999999999999999997 454333322110 000 000011111222478999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEEEecCc
Q 024917 208 AIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 208 a~~LL~~~Ga~vV~~avlve~~~ 230 (260)
+++.|++.|++.+.+++++..+.
T Consensus 143 ai~~L~~~G~~~I~~~~ll~~~~ 165 (209)
T PRK00129 143 AIDLLKKRGAKNIKVLCLVAAPE 165 (209)
T ss_pred HHHHHHHcCCCEEEEEEEecCHH
Confidence 99999999999999999988875
No 71
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.73 E-value=6.8e-08 Score=85.25 Aligned_cols=93 Identities=19% Similarity=0.152 Sum_probs=66.8
Q ss_pred cEEEeecCchhhhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHH
Q 024917 128 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lg-vp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~ 206 (260)
-+++++-.+|++++..+.+.+. +++..+.+.+. . . +.+.......-....+|++||||||+++||+|+.
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~-~-~--------t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 139 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRN-E-E--------TLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMI 139 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeC-C-C--------CCCCEEEEecCCCCCCCCEEEEECCCccchHHHH
Confidence 3788889999999999999997 34433322111 0 0 0000011111122347899999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEEEecCc
Q 024917 207 AAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 207 aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
++++.|++.|++.+.+++++..+.
T Consensus 140 ~ai~~L~~~G~~~I~v~~ll~~~~ 163 (207)
T TIGR01091 140 AALDLLKKRGAKKIKVLSIVAAPE 163 (207)
T ss_pred HHHHHHHHcCCCEEEEEEEecCHH
Confidence 999999999999999999988875
No 72
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.69 E-value=8.1e-08 Score=83.72 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=63.0
Q ss_pred cEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCC----------Ccee-ee----eeeec--ccce--eEEEEecccCC
Q 024917 128 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP----------GEVI-SE----EYSLE--YGKD--VMEMHVGAVQA 188 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~----------~~~~-s~----~y~~e--~g~~--~lel~~~~i~~ 188 (260)
-+||+...+|-.-|+.+|.+|++.|.++.+.++.. .+.. .. ..... .... .+.+ .|.+ +
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~v-VGDV-~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNV-VGDV-K 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEE-ES---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEE-EEEc-c
Confidence 38999999999999999999999998877644310 1111 00 00000 0000 1111 2444 8
Q ss_pred CCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 189 GERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 189 GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
|+.++||||++.||+|+.+++++|++.||..|.+++--.
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHg 121 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHG 121 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCc
Confidence 999999999999999999999999999999888766533
No 73
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.62 E-value=2.4e-07 Score=80.00 Aligned_cols=127 Identities=16% Similarity=0.304 Sum_probs=80.9
Q ss_pred echhhccCHHHHHHHHHHHHHHHhc---CCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCC--ceee-eeeeec
Q 024917 100 DITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG--EVIS-EEYSLE 173 (260)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La~~i~~---~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~--~~~s-~~y~~e 173 (260)
|++.++.-.-+++.-.+.+|..+-+ .++=+++|+..+|+.|-+.+-+++.- .+..+.+|- ..++ ++|..+
T Consensus 31 Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n----~~s~~~~pmtvDFIR~kSY~n~ 106 (216)
T KOG3367|consen 31 DLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKN----RNSDRPLPMTVDFIRAKSYCND 106 (216)
T ss_pred cccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhh----cccCCCcceeeeeeehhhhcCC
Confidence 4554545444555545555544332 13448999999999888888888632 011111111 1111 233322
Q ss_pred ccceeEEEEe-cc--cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc
Q 024917 174 YGKDVMEMHV-GA--VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 230 (260)
Q Consensus 174 ~g~~~lel~~-~~--i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~ 230 (260)
...+.+.+-. +. -..||+|||||||+.||.||....+.+++.+++.+.++.+..++.
T Consensus 107 ~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 107 QSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred cccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 2222233222 22 258999999999999999999999999999999999999988876
No 74
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=98.53 E-value=4.1e-07 Score=84.25 Aligned_cols=109 Identities=23% Similarity=0.260 Sum_probs=82.4
Q ss_pred chhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEE
Q 024917 101 ITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 180 (260)
Q Consensus 101 i~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~le 180 (260)
+.+++..|..++.+- +...+++--+|+.++.+|..-++.+|..|++-|..+-|.++- .++-+...
T Consensus 142 Vdnly~~p~~l~~ir----~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k-----------~~~v~~~m 206 (316)
T KOG1448|consen 142 VDNLYAEPAVLNYIR----ENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRK-----------ANEVDIRM 206 (316)
T ss_pred chhhccchHHHHHHH----hhCCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhc-----------ccccceEE
Confidence 567888887766654 334555555899999999999999999999888665554431 11222122
Q ss_pred EEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEE
Q 024917 181 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 225 (260)
Q Consensus 181 l~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avl 225 (260)
+..|.+ +||.++||||++.|++|+..+.+.|.++||+.|..++-
T Consensus 207 ~LVGDv-~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~T 250 (316)
T KOG1448|consen 207 VLVGDV-KGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVT 250 (316)
T ss_pred EEEecc-CCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEc
Confidence 333555 89999999999999999999999999999999987664
No 75
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.40 E-value=5.1e-07 Score=86.16 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE--EecCCCCCCcee-eeeeeec-cc-ceeEEEEeccc
Q 024917 112 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVI-SEEYSLE-YG-KDVMEMHVGAV 186 (260)
Q Consensus 112 ~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~--iRK~~kl~~~~~-s~~y~~e-~g-~~~lel~~~~i 186 (260)
..+++.|+.. ...+.|+|.+++..|-.-|...|...|+||.. +|.+ .-+.++ .-+.+.. .+ ..+|-... ..
T Consensus 278 ~~~G~~LA~e-~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnr--YvGRTFI~P~q~iR~~~V~~Kl~~l~-~~ 353 (474)
T KOG0572|consen 278 LQCGEQLATE-APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNR--YVGRTFIEPNQRIRQLGVKKKLGPLR-QN 353 (474)
T ss_pred HHHHhHhhhc-CCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcc--cccceecCccHHHHHhhhhhhcccch-hh
Confidence 3578888764 34689999999999999999999999999953 3322 112222 1111100 01 11122111 33
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEE
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~av 224 (260)
.+||||+||||-+--|.|+...+++|+++||+.|.+..
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ri 391 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRI 391 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEe
Confidence 58999999999999999999999999999999998754
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.84 E-value=0.00032 Score=61.60 Aligned_cols=135 Identities=20% Similarity=0.321 Sum_probs=91.6
Q ss_pred CCCCCceEEechhhc-----cCHHHHHHHHHHHHHHHhcC--CccEEEeecCchhhhHHHHHHHhCCCEEEEec-CCCCC
Q 024917 91 FPKPGIMFQDITTLL-----LDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRK-PKKLP 162 (260)
Q Consensus 91 fp~~Gi~f~Di~~ll-----~dp~~~~~l~~~La~~i~~~--~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK-~~kl~ 162 (260)
-|+-+++| ++.++ .+|......+..|+..+.+. +.-+++|...-+--+|..++..++-...++.. +..++
T Consensus 13 NpKR~fLf--VSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~ 90 (191)
T PF15609_consen 13 NPKRAFLF--VSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVP 90 (191)
T ss_pred CCCceeEE--EecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCC
Confidence 35555444 44443 47889999999999888763 56799999999999999999999854444443 34455
Q ss_pred C--cee--eeeeeeccccee-EEEEe-cccCCCCeEEEEeeeccchHHHHHHHHHHHhC-CCcEEEEEEEEecC
Q 024917 163 G--EVI--SEEYSLEYGKDV-MEMHV-GAVQAGERALIVDDLVATGGTLSAAIRLLGSF-QNHIFILICIQMLN 229 (260)
Q Consensus 163 ~--~~~--s~~y~~e~g~~~-lel~~-~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~-Ga~vV~~avlve~~ 229 (260)
+ +.. .+.. .+..+. ++... ..+...+.+++|||=+|||.|...+++.|++. .-+.+.++.+++-.
T Consensus 91 ~~~~~~~F~E~H--SHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~ 162 (191)
T PF15609_consen 91 GVPPLLEFEEEH--SHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWR 162 (191)
T ss_pred CCccceeeeccc--cccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCC
Confidence 5 222 2221 122232 22222 23445779999999999999999999999865 44566677777774
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=97.81 E-value=0.00012 Score=66.63 Aligned_cols=45 Identities=36% Similarity=0.484 Sum_probs=37.8
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCc--EEEEEEEEecCc
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNH--IFILICIQMLNA 230 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~--vV~~avlve~~~ 230 (260)
+.++++|+|+||+++||+|+.+++++|++.|++ .+.+++++.-++
T Consensus 154 i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~ 200 (244)
T PLN02541 154 FPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPP 200 (244)
T ss_pred cCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHH
Confidence 445779999999999999999999999999987 566666666654
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.36 E-value=0.0053 Score=54.18 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=59.9
Q ss_pred EEEeecCchhhhHHHHHHHhC-CCE--EEEecCCCCCCceeeeeeeecccceeEEE-EecccCCCCeEEEEeeeccchHH
Q 024917 129 VVAGIEARGFIFGPPIALAIG-AKF--VPMRKPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGGT 204 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~Lg-vp~--v~iRK~~kl~~~~~s~~y~~e~g~~~lel-~~~~i~~GkrVLIVDDVltTG~T 204 (260)
++|++...|.++...+.+.+- .++ +.+++..+ ..+..++. +-....++++|+|+|-+++||+|
T Consensus 70 ~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~-------------t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s 136 (207)
T PF14681_consen 70 CIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEE-------------TLEPVLYYNKLPEDIENRKVILLDPMLATGGS 136 (207)
T ss_dssp EEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETT-------------TSSEEEEEEE--TTGTTSEEEEEESEESSSHH
T ss_pred EEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCC-------------ccceeeeHhhCCCCccCCEEEEEeccccchhh
Confidence 677788999999999888873 443 33333211 01111111 11222378999999999999999
Q ss_pred HHHHHHHHHhCCC--cEEEEEEEEecCc
Q 024917 205 LSAAIRLLGSFQN--HIFILICIQMLNA 230 (260)
Q Consensus 205 l~aa~~LL~~~Ga--~vV~~avlve~~~ 230 (260)
+.++++.|++.|+ +.+.+++++..++
T Consensus 137 ~~~ai~~L~~~G~~~~~I~~v~~ias~~ 164 (207)
T PF14681_consen 137 AIAAIEILKEHGVPEENIIIVSVIASPE 164 (207)
T ss_dssp HHHHHHHHHHTTG-GGEEEEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCcceEEEEEEEecHH
Confidence 9999999999886 6666666666544
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0083 Score=53.53 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=60.6
Q ss_pred EEEeecCchhhhHHHHHHHhC-CC--EEEEecCCCCCCceeeeeeeecccceeEEEE-ecccCCCCeEEEEeeeccchHH
Q 024917 129 VVAGIEARGFIFGPPIALAIG-AK--FVPMRKPKKLPGEVISEEYSLEYGKDVMEMH-VGAVQAGERALIVDDLVATGGT 204 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~Lg-vp--~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~-~~~i~~GkrVLIVDDVltTG~T 204 (260)
++|++-..|..+...+.+.+- ++ .+-+.+... ..+...+.. -....+++.|+|+|=.++||+|
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdee-------------t~~p~~yy~KLP~~~~~~~viv~DPMLATG~s 139 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEE-------------TLEPVLYYEKLPEDIDERTVIVLDPMLATGGS 139 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCc-------------cCceehhHHhCCCcccCCeEEEECchhhccHh
Confidence 456667888888888877753 11 222222111 001111111 1123478999999999999999
Q ss_pred HHHHHHHHHhC-CCcEEEEEEEEecCc
Q 024917 205 LSAAIRLLGSF-QNHIFILICIQMLNA 230 (260)
Q Consensus 205 l~aa~~LL~~~-Ga~vV~~avlve~~~ 230 (260)
+.++++.|++. |++.+.+.+++.-++
T Consensus 140 ~i~ai~~L~~~G~~~~I~~v~~vAape 166 (210)
T COG0035 140 AIAAIDLLKKRGGPKNIKVVSLVAAPE 166 (210)
T ss_pred HHHHHHHHHHhCCCceEEEEEEEecHH
Confidence 99999999999 899999999998876
No 80
>PF15610 PRTase_3: PRTase ComF-like
Probab=94.61 E-value=0.43 Score=44.24 Aligned_cols=123 Identities=13% Similarity=0.177 Sum_probs=71.2
Q ss_pred hhhccCHHHHHHHHHHHHHHHhc------CCccEEEeecC--chhhhH-----HHHHHHh-------CCCEE-EEecCCC
Q 024917 102 TTLLLDTKAFRDTIDLFVERYKD------KNISVVAGIEA--RGFIFG-----PPIALAI-------GAKFV-PMRKPKK 160 (260)
Q Consensus 102 ~~ll~dp~~~~~l~~~La~~i~~------~~iDvVVgve~--rG~~lA-----~~LA~~L-------gvp~v-~iRK~~k 160 (260)
+-.++|....+.+++.|++-+-. ..-|.||.+++ +-+|=| ..+-..| |.|-+ .+.-.+.
T Consensus 26 rfKfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~ 105 (274)
T PF15610_consen 26 RFKFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRN 105 (274)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeeccc
Confidence 34578999999998888865433 23455555544 444333 2333333 33322 2211111
Q ss_pred CCCceeeeeeee---c-----ccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEE-EEEEEec
Q 024917 161 LPGEVISEEYSL---E-----YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI-LICIQML 228 (260)
Q Consensus 161 l~~~~~s~~y~~---e-----~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~-~avlve~ 228 (260)
.+..+.|-- + ...+.+.+.+..+ .|+.++++|||..||++-..+.+.+++.|++-.. .....+.
T Consensus 106 ---~ty~~DYg~Ls~edR~~li~nd~y~ID~~~l-~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yly~ael 178 (274)
T PF15610_consen 106 ---QTYCEDYGNLSFEDRKSLISNDTYHIDKEFL-SGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYLYYAEL 178 (274)
T ss_pred ---cCcccccccCCHHhhhccccCCceEecHHHh-CCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEEEEecc
Confidence 111112210 1 1123344544455 9999999999999999999999999999986533 3344443
No 81
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.12 Score=47.39 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=74.4
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHHhc--CCccE--EEeecCch-hhhHHHHHHHhCCCEEEEecCCCCCCceeeeeee
Q 024917 97 MFQDITTLLLDTKAFRDTIDLFVERYKD--KNISV--VAGIEARG-FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYS 171 (260)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~i~~--~~iDv--VVgve~rG-~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~ 171 (260)
.|.|.+.. ..++.+..+++.++..+-+ ..+|+ ++++...| ..-+...|+..+++.++-+..-+ . +.....
T Consensus 64 i~~df~~~-~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~---g-~~rk~~ 138 (261)
T KOG1377|consen 64 IFFDFSLF-NSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIK---G-LNRKLL 138 (261)
T ss_pred eeeccccc-ccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHH---H-Hhhhcc
Confidence 35566644 3788899999988877654 46899 99999888 45566677888877654332000 0 000000
Q ss_pred ecccceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecC
Q 024917 172 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 229 (260)
Q Consensus 172 ~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~ 229 (260)
.++++.-+-+ .+-..+|++|+.||+.++|.-+... -+.-..+.++++.+..++.
T Consensus 139 k~~~egG~ll--lAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq 192 (261)
T KOG1377|consen 139 KDHGEGGVLL--LAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQ 192 (261)
T ss_pred ccCCCCceEE--EEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHH
Confidence 0111111111 1224788899999966666555555 4444566788887777776
No 82
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=92.39 E-value=1.3 Score=40.91 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=71.8
Q ss_pred hhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCC----------CC-CCceeeeee
Q 024917 102 TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPK----------KL-PGEVISEEY 170 (260)
Q Consensus 102 ~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~----------kl-~~~~~s~~y 170 (260)
.++-..|=+++. +-+.+++++-.+||+-..+-..-|...|.+|.+.+.++.-+. +. |.++.....
T Consensus 147 dnlraspfllqy----iqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t~ 222 (354)
T KOG1503|consen 147 DNLRASPFLLQY----IQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATT 222 (354)
T ss_pred cccccCHHHHHH----HHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCcccccc
Confidence 344455544444 445666666567887777777888999999888876554221 11 222222100
Q ss_pred --eeccc------ceeEEEEecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEE
Q 024917 171 --SLEYG------KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 223 (260)
Q Consensus 171 --~~e~g------~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~a 223 (260)
.++.. +..+.+. +. ..|+-.++|||++..-.+..++++.|++.||-.+++.
T Consensus 223 ~~~~~lp~~~~k~kppltvv-gd-vggriaimvddiiddvqsfvaaae~lkergaykiyv~ 281 (354)
T KOG1503|consen 223 HPSLELPAQISKEKPPLTVV-GD-VGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVM 281 (354)
T ss_pred CccccCchhhcccCCCeEEE-ec-cCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEE
Confidence 00000 0011111 22 3678889999999999999999999999999777643
No 83
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=40 Score=32.44 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=66.9
Q ss_pred cCHHHHHHHHHHHHHHHhcCCccEEEeecCchh--hhHHHHHHHhCCCEEEEecCCC-CCCceeeeeeeecccceeEEEE
Q 024917 106 LDTKAFRDTIDLFVERYKDKNISVVAGIEARGF--IFGPPIALAIGAKFVPMRKPKK-LPGEVISEEYSLEYGKDVMEMH 182 (260)
Q Consensus 106 ~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~--~lA~~LA~~Lgvp~v~iRK~~k-l~~~~~s~~y~~e~g~~~lel~ 182 (260)
-+++.....-+.+-+.. ..++|+|+++|.+|+ .+--.+|..+|+|++-.---++ .|.-.-..-|-..+....+.+
T Consensus 76 p~g~e~~ra~e~~~~~~-~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqMtTf~~~g~~~tPlvi- 153 (357)
T COG3535 76 PNGDEAIRAFEVLEDYL-GKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQMTTFYLHGLPATPLVI- 153 (357)
T ss_pred CCcHHHHHHHHHHHHHh-CCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEEEEEEEcCCCCCceEE-
Confidence 34555555555554444 468999999999999 4445667789999985433222 122111111111111111111
Q ss_pred ecccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEE
Q 024917 183 VGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 183 ~~~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~av 224 (260)
.-.+|.++++ ..++-..+-+.+....-++|+...-+.+
T Consensus 154 --~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~~a~y 191 (357)
T COG3535 154 --CDERGNRVII--ETVSNKWAERIARAATVEMGGSAAVALY 191 (357)
T ss_pred --EecCCCEEEE--EeecchhHHHHHHHHHHHcCCeEEEEEc
Confidence 1135666655 8899999999999999999986554443
No 84
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=73.08 E-value=9.5 Score=34.37 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCCeEEEEeeeccchHHHHHHHHHHHhCCCc--EEEEEEEEecCc
Q 024917 188 AGERALIVDDLVATGGTLSAAIRLLGSFQNH--IFILICIQMLNA 230 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~--vV~~avlve~~~ 230 (260)
..++||++=-++.||.|+..|++.|+++|.. ++...-++-.+.
T Consensus 188 ~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP~ 232 (267)
T KOG1017|consen 188 TSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITPT 232 (267)
T ss_pred cceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecch
Confidence 5689999999999999999999999999974 344444444443
No 85
>PRK12342 hypothetical protein; Provisional
Probab=63.03 E-value=25 Score=32.26 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCccEEEeec----CchhhhHHHHHHHhCCCEEE
Q 024917 115 IDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 154 (260)
Q Consensus 115 ~~~La~~i~~~~iDvVVgve----~rG~~lA~~LA~~Lgvp~v~ 154 (260)
+..|+..++..++|+|++=. ...-..+..+|..||+|++.
T Consensus 98 a~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 98 AKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 44445555555699999853 33347788999999999853
No 86
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=61.54 E-value=83 Score=25.23 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=42.2
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc--hHH--HHHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GGT--LSAAIR 210 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT--G~T--l~aa~~ 210 (260)
+..-.+|..+|+.||.+.....-+. +..|+-.+.+ ..-.+|+.|+||=+.... -.- +.-+++
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~------------F~dGE~~v~i--~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~ 72 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKR------------FPDGETYVRI--PESVRGKDVFIIQSTSPPVNDNLMELLLLID 72 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-------------TTS-EEEEE--SS--TTSEEEEE---SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEE------------cCCCCEEEEe--cccccCCceEEEEecCCchhHHHHHHHHHHH
Confidence 4455899999999999886533211 1223333333 223479999999888865 222 233567
Q ss_pred HHHhCCCcEEEE
Q 024917 211 LLGSFQNHIFIL 222 (260)
Q Consensus 211 LL~~~Ga~vV~~ 222 (260)
.+++.|++.+..
T Consensus 73 a~r~~~a~~i~~ 84 (116)
T PF13793_consen 73 ALRRAGAKRITL 84 (116)
T ss_dssp HHHHTTBSEEEE
T ss_pred HHHHcCCcEEEE
Confidence 788899987754
No 87
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=61.02 E-value=53 Score=35.34 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=24.8
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEE
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFIL 222 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~ 222 (260)
.+|.+||||||--.. ...+.++|++.|++++.+
T Consensus 687 l~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 687 LDGVTVLLDITSEEV---RKIVTRQLENWGATCITP 719 (894)
T ss_pred CCCCEEEEEeCCHHH---HHHHHHHHHHCCCEEEEc
Confidence 478899999998754 344556889999987653
No 88
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=56.03 E-value=1.3e+02 Score=28.62 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=48.9
Q ss_pred EEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hHHH--
Q 024917 129 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGTL-- 205 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~Tl-- 205 (260)
+++-.-...-.+|..+|+.||+++..+..++ . ..|+-.+.+. .. .+|+.|+||-..... ...+
T Consensus 22 ~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~-F-----------pDGE~~v~i~-~~-vrg~~V~ivqs~~~p~nd~l~e 87 (330)
T PRK02812 22 LRLFSGSSNPALAQEVARYLGMDLGPMIRKR-F-----------ADGELYVQIQ-ES-IRGCDVYLIQPTCAPVNDHLME 87 (330)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCceeeEEEE-C-----------CCCCEEEEeC-CC-CCCCEEEEECCCCCCccHHHHH
Confidence 3444456667999999999999875433211 1 2233223322 22 378999999885433 3333
Q ss_pred -HHHHHHHHhCCCcEEEE
Q 024917 206 -SAAIRLLGSFQNHIFIL 222 (260)
Q Consensus 206 -~aa~~LL~~~Ga~vV~~ 222 (260)
.-+++.++++|++.+..
T Consensus 88 Lll~~~alr~~ga~ri~~ 105 (330)
T PRK02812 88 LLIMVDACRRASARQITA 105 (330)
T ss_pred HHHHHHHHHHhCCceEEE
Confidence 34667788999986654
No 89
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.72 E-value=1e+02 Score=29.13 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=41.1
Q ss_pred cCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccch-H---HHHHHH
Q 024917 134 EARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATG-G---TLSAAI 209 (260)
Q Consensus 134 e~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG-~---Tl~aa~ 209 (260)
-...-.+|..+|+.||+++..+.... . ..|+-.+.+. .-.+|+.|+||=..-... . =+.-++
T Consensus 12 g~~~~~La~~ia~~lg~~l~~~~~~~-F-----------pdGE~~v~i~--~~v~g~~V~iiqs~~~p~nd~lmeLl~~~ 77 (319)
T PRK04923 12 GNANKPLAQSICKELGVRMGKALVTR-F-----------SDGEVQVEIE--ESVRRQEVFVIQPTCAPSAENLMELLVLI 77 (319)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEEC--CCcCCCeEEEEecCCCCCchHHHHHHHHH
Confidence 34557899999999999975433211 1 1233222222 223677887775432211 1 122345
Q ss_pred HHHHhCCCcEEEE
Q 024917 210 RLLGSFQNHIFIL 222 (260)
Q Consensus 210 ~LL~~~Ga~vV~~ 222 (260)
+.++++|++.+..
T Consensus 78 ~alr~~~a~~i~~ 90 (319)
T PRK04923 78 DALKRASAASVTA 90 (319)
T ss_pred HHHHHcCCcEEEE
Confidence 6667888875553
No 90
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=55.16 E-value=48 Score=30.42 Aligned_cols=40 Identities=5% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCccEEEee----cCchhhhHHHHHHHhCCCEE
Q 024917 114 TIDLFVERYKDKNISVVAGI----EARGFIFGPPIALAIGAKFV 153 (260)
Q Consensus 114 l~~~La~~i~~~~iDvVVgv----e~rG~~lA~~LA~~Lgvp~v 153 (260)
.+..|+..+++.++|+|++= +...-..+..+|..||+|++
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCce
Confidence 34445555555579999985 34444788899999999975
No 91
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=51.92 E-value=29 Score=31.66 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHhcCCccEEEeecCch--hhhHHHHHHHhCCCEEEEecCC
Q 024917 121 RYKDKNISVVAGIEARG--FIFGPPIALAIGAKFVPMRKPK 159 (260)
Q Consensus 121 ~i~~~~iDvVVgve~rG--~~lA~~LA~~Lgvp~v~iRK~~ 159 (260)
.+++.++|++|+=++|| +.==...|+.+|+|+++++++.
T Consensus 185 L~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 185 LLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 35556899999999988 5444467899999999988764
No 92
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=48.86 E-value=1.7e+02 Score=29.19 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=49.3
Q ss_pred cEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hHHH-
Q 024917 128 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGTL- 205 (260)
Q Consensus 128 DvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~Tl- 205 (260)
+.++-.-...-.||..||..||+++..+..++ . ..|+-.+.+. .. .+|+.|+||-..... -..+
T Consensus 119 ~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~r-F-----------pDGE~~Vri~-e~-VrG~dV~IVqS~~~pvNd~Lm 184 (439)
T PTZ00145 119 NAILFSGSSNPLLSKNIADHLGTILGRVHLKR-F-----------ADGEVSMQFL-ES-IRGKDVYIIQPTCPPVNENLI 184 (439)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCCceeeEEEE-C-----------CCCCEEEEEC-CC-cCCCeEEEEecCCCCCcHHHH
Confidence 34444456667999999999999875443222 1 1233223332 22 378899998875432 2222
Q ss_pred --HHHHHHHHhCCCcEEEEE
Q 024917 206 --SAAIRLLGSFQNHIFILI 223 (260)
Q Consensus 206 --~aa~~LL~~~Ga~vV~~a 223 (260)
.-+++.++++||+.|.++
T Consensus 185 ELLllidAlr~agAkrItlV 204 (439)
T PTZ00145 185 ELLLMISTCRRASAKKITAV 204 (439)
T ss_pred HHHHHHHHHHHhccCeEEEE
Confidence 235677789999877654
No 93
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=18 Score=38.29 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=41.6
Q ss_pred cCCCCCCCceEEechhh-------------ccCHHHHHHHHHHHHHHHhcCCccEEEeecCchh-hhHHHHHHHhCCCEE
Q 024917 88 IPDFPKPGIMFQDITTL-------------LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFV 153 (260)
Q Consensus 88 ~p~fp~~Gi~f~Di~~l-------------l~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~-~lA~~LA~~Lgvp~v 153 (260)
+.+-+..||.|.|+..+ |.+|+.+..++ .+++ .++ .++|++--|- .+|.++|-+.|+||+
T Consensus 300 ~~~~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG----AKiP-kGv-LL~GPPGTGKTLLAKAiAGEAgVPF~ 373 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELG----AKIP-KGV-LLVGPPGTGKTLLAKAIAGEAGVPFF 373 (774)
T ss_pred eccCCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcC----CcCc-Cce-EEECCCCCcHHHHHHHHhcccCCcee
Confidence 44455668899998754 34444443333 1111 133 8888888787 999999999999997
Q ss_pred EE
Q 024917 154 PM 155 (260)
Q Consensus 154 ~i 155 (260)
.+
T Consensus 374 sv 375 (774)
T KOG0731|consen 374 SV 375 (774)
T ss_pred ee
Confidence 64
No 94
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=48.33 E-value=39 Score=31.67 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=37.8
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecC
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 229 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~ 229 (260)
..|++|+||--=-+......++.++|+++|+++.+...+-+.-
T Consensus 81 L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~ 123 (308)
T PF11382_consen 81 LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKF 123 (308)
T ss_pred cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhh
Confidence 4899999998767788999999999999999999998886553
No 95
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=45.64 E-value=2.4e+02 Score=26.37 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=45.9
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHH---HHHHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT---LSAAIRL 211 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~T---l~aa~~L 211 (260)
...-.||..+|+.||+|+....... +..|+..+.+.. . .+|+.|+||-....--.. +.-+++.
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~------------F~dGE~~v~i~~-~-v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHR------------FPDGESYVRLDS-P-VAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEE------------CCCCCEEEEECC-C-CCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 4456899999999999975433211 122443344332 2 378999999875432222 2335677
Q ss_pred HHhCCCcEEEE
Q 024917 212 LGSFQNHIFIL 222 (260)
Q Consensus 212 L~~~Ga~vV~~ 222 (260)
++++|++.+.+
T Consensus 75 lr~~~a~~i~~ 85 (301)
T PRK07199 75 ARELGARRVGL 85 (301)
T ss_pred HHHcCCCeEEE
Confidence 78999986654
No 96
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=45.36 E-value=1.6e+02 Score=27.51 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=41.5
Q ss_pred hhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-h-HH--HHHHHHHHHh
Q 024917 139 IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-G-GT--LSAAIRLLGS 214 (260)
Q Consensus 139 ~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G-~T--l~aa~~LL~~ 214 (260)
.||..+|+.||+++..+..+. . ..|+-.+.+. .. .+|+.|+||-..... - .- +.-+++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~-F-----------pdGE~~v~i~-~~-v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKR-F-----------ADGEIYVQLQ-ES-VRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEEC-CC-CCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 478999999999875433221 1 2233223332 22 378889998875422 1 22 2345677788
Q ss_pred CCCcEEEE
Q 024917 215 FQNHIFIL 222 (260)
Q Consensus 215 ~Ga~vV~~ 222 (260)
+|++.+..
T Consensus 68 ~~a~~i~~ 75 (302)
T PLN02369 68 ASAKRITA 75 (302)
T ss_pred cCCCeEEE
Confidence 99986643
No 97
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.29 E-value=2e+02 Score=26.51 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=44.8
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHH---HHHHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT---LSAAIRL 211 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~T---l~aa~~L 211 (260)
...-.+|..+|+.+|+++....... . ..|+-.+.+.. . .+|+.|+|+-..-.-... +.-+++.
T Consensus 6 ~~~~~la~~ia~~l~~~~~~~~~~~-F-----------pdGE~~v~i~~-~-v~g~~v~i~~~~~~~~d~l~ell~~~~a 71 (285)
T PRK00934 6 SASQLLASEVARLLNTELALVETKR-F-----------PDGELYVRILG-E-IDGEDVVIISTTYPQDENLVELLLLIDA 71 (285)
T ss_pred CCCHHHHHHHHHHHCCceEeeEEEE-C-----------CCCCEEEEECC-C-cCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3445899999999999986543322 1 22333333332 3 378899888764322222 3335677
Q ss_pred HHhCCCcEEEE
Q 024917 212 LGSFQNHIFIL 222 (260)
Q Consensus 212 L~~~Ga~vV~~ 222 (260)
++++|++.+..
T Consensus 72 lr~~ga~~i~~ 82 (285)
T PRK00934 72 LRDEGAKSITL 82 (285)
T ss_pred HHHcCCCeEEE
Confidence 78999976654
No 98
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=44.07 E-value=42 Score=29.29 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCccEEEeecCc----hhhhHHHHHHHhCCCEE
Q 024917 107 DTKAFRDTIDLFVERYKDKNISVVAGIEAR----GFIFGPPIALAIGAKFV 153 (260)
Q Consensus 107 dp~~~~~l~~~La~~i~~~~iDvVVgve~r----G~~lA~~LA~~Lgvp~v 153 (260)
+++.+.. .+++.+...++|+|+...+. |--++..+|.+||.|++
T Consensus 92 ~~e~~a~---al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 92 DTLATAK---ALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred ChHHHHH---HHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 4554443 34444444468988888655 88999999999999974
No 99
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.60 E-value=2.1e+02 Score=26.74 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=44.2
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hHH---HHHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIR 210 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~T---l~aa~~ 210 (260)
...-.+|..+|+.||.+...+..+. . ..|+-.+.+. +. .+|+.|+||=+.... ... +.-+++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~-F-----------pdGE~~vri~-~~-v~g~~V~ii~s~~~~~nd~l~eLll~~~ 72 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGR-F-----------SDGEISVEIN-EN-VRGKDVFIIQSTCAPTNDNLMELLIMID 72 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEeC-CC-CCCCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 4456899999999999875432211 1 2233223332 22 378999999664322 222 334667
Q ss_pred HHHhCCCcEEEE
Q 024917 211 LLGSFQNHIFIL 222 (260)
Q Consensus 211 LL~~~Ga~vV~~ 222 (260)
.++++|++.+..
T Consensus 73 alr~~ga~~i~l 84 (309)
T PRK01259 73 ALKRASAGRITA 84 (309)
T ss_pred HHHHcCCceEEE
Confidence 778999986654
No 100
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=42.58 E-value=1.8e+02 Score=27.17 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=42.5
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEE-eeeccc-hHH---HHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIV-DDLVAT-GGT---LSAAI 209 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIV-DDVltT-G~T---l~aa~ 209 (260)
...-.+|..+|+.+|.++..+..+. . ..|+-.+.+. +. .+|+.|+|| -..... -.. +.-++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~-F-----------pdGE~~v~i~-~~-v~g~~v~iv~~s~~~~~~~~l~el~~~~ 72 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLPLGDVEVKR-F-----------PDGELYVRIN-ES-VRGKDVFIIQQSTSAPVNDNLMELLIMI 72 (308)
T ss_pred CCCHHHHHHHHHHhCCeeeeeEEEE-C-----------CCCCEEEEEC-CC-CCCCeEEEEeCCCCCCccHHHHHHHHHH
Confidence 3446899999999999886543211 1 2233223332 22 368888888 543211 222 33356
Q ss_pred HHHHhCCCcEEEE
Q 024917 210 RLLGSFQNHIFIL 222 (260)
Q Consensus 210 ~LL~~~Ga~vV~~ 222 (260)
+.++++|++.+..
T Consensus 73 ~a~r~~ga~~i~~ 85 (308)
T TIGR01251 73 DALKRASAKSITA 85 (308)
T ss_pred HHHHHcCCCeEEE
Confidence 7778889876643
No 101
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=42.16 E-value=55 Score=27.34 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCccEEEeec-CchhhhHHHHHHHhCCCEE
Q 024917 113 DTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFV 153 (260)
Q Consensus 113 ~l~~~La~~i~~~~iDvVVgve-~rG~~lA~~LA~~Lgvp~v 153 (260)
..++.+++.+++.++++|+... ..|--++..+|.+||.|++
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCce
Confidence 3444555555555788887764 6788999999999999975
No 102
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.08 E-value=2.9e+02 Score=25.97 Aligned_cols=74 Identities=9% Similarity=0.128 Sum_probs=44.1
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hH---HHHHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG---TLSAAIR 210 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~---Tl~aa~~ 210 (260)
...-.||..+|+.||+++....... . ..|+-.+.+. +. .+|+.|+||-..... -. -+.-+++
T Consensus 12 ~~~~~la~~ia~~lg~~l~~~~~~~-F-----------pdGE~~v~i~-~~-vrg~dV~iv~s~~~~~nd~lmelll~~~ 77 (320)
T PRK02269 12 SSNKELAEKVAQEIGIELGKSSVRQ-F-----------SDGEIQVNIE-ES-IRGHHVFILQSTSSPVNDNLMEILIMVD 77 (320)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEEC-CC-CCCCEEEEEecCCCCccchHHHHHHHHH
Confidence 4456899999999999875433221 1 2233223322 22 378899998764321 11 1344667
Q ss_pred HHHhCCCcEEEE
Q 024917 211 LLGSFQNHIFIL 222 (260)
Q Consensus 211 LL~~~Ga~vV~~ 222 (260)
.++++|++.+.+
T Consensus 78 alr~~~a~~i~~ 89 (320)
T PRK02269 78 ALKRASAESINV 89 (320)
T ss_pred HHHHhCCCeEEE
Confidence 788999987643
No 103
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.97 E-value=1.8e+02 Score=27.22 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hHH---HHHHHHHHHhC
Q 024917 140 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIRLLGSF 215 (260)
Q Consensus 140 lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~T---l~aa~~LL~~~ 215 (260)
+|..+|+.+|+++.....+. . ..|+-.+.+. .-.+|+.|+||--.... ... +.-+++.++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~-F-----------~DGE~~vri~--~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYD-F-----------ANGEIYVRFE--ESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEEC--CCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 57889999999875433221 1 1233222222 22378999988764432 222 23466778899
Q ss_pred CCcEEEE
Q 024917 216 QNHIFIL 222 (260)
Q Consensus 216 Ga~vV~~ 222 (260)
|++.+..
T Consensus 67 ~a~~i~~ 73 (304)
T PRK03092 67 SAKRITV 73 (304)
T ss_pred CCCeEEE
Confidence 9987654
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=41.53 E-value=1.8e+02 Score=28.73 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=66.0
Q ss_pred echhhccCHHHHHHHHHHHHHHHhc--CCccEEEeecCchh-hhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 024917 100 DITTLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (260)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La~~i~~--~~iDvVVgve~rG~-~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (260)
.+..+.++.+..+.+...+..+... ...=++.|++--|= .+|..+|+.++.+++.+.-...-....+.. . .+.
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-~---i~~ 87 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-V---AGE 87 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-H---HHH
Confidence 4667888898888888777665432 23446777776666 799999999998876543211000000000 0 000
Q ss_pred eeEEEEecccC-CCCeEEEEeee--ccch---HHHHHHHHHHHhCCCcEE
Q 024917 177 DVMEMHVGAVQ-AGERALIVDDL--VATG---GTLSAAIRLLGSFQNHIF 220 (260)
Q Consensus 177 ~~lel~~~~i~-~GkrVLIVDDV--ltTG---~Tl~aa~~LL~~~Ga~vV 220 (260)
.. ....+. .+++||||||+ ++.. +.+.+..+++++.+..++
T Consensus 88 ~~---~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 88 AA---TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPII 134 (482)
T ss_pred hh---ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEE
Confidence 00 001122 35789999987 3321 457888888887665444
No 105
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=40.35 E-value=3.2e+02 Score=25.93 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=47.0
Q ss_pred EeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hHH---HH
Q 024917 131 AGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LS 206 (260)
Q Consensus 131 Vgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~T---l~ 206 (260)
+-.-...-.||..+|+.||+++..+...+ . ..|+-.+.+. .. .+|+.|+||=+.... ... +.
T Consensus 12 i~~~~~~~~La~~ia~~lg~~l~~~~~~~-F-----------pdGE~~v~i~-~~-vrg~dV~ivqs~~~p~nd~l~eLl 77 (332)
T PRK00553 12 IFSLSKAKKLVDSICRKLSMKPGEIVIQK-F-----------ADGETYIRFD-ES-VRNKDVVIFQSTCSPVNDSLMELL 77 (332)
T ss_pred EEECCCCHHHHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEEC-CC-CCCCEEEEEcCCCCCCchHHHHHH
Confidence 33335557899999999999875433211 1 2233223332 23 378999998775432 222 23
Q ss_pred HHHHHHHhCCCcEEEEE
Q 024917 207 AAIRLLGSFQNHIFILI 223 (260)
Q Consensus 207 aa~~LL~~~Ga~vV~~a 223 (260)
-+++.++++||+.+.++
T Consensus 78 l~~~alr~~~a~~i~~V 94 (332)
T PRK00553 78 IAIDALKRGSAKSITAI 94 (332)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 45677789999866543
No 106
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=39.85 E-value=59 Score=29.73 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHhcCCccEEEeecCc---hhhhHHHHHHHhCCCEEEEecCC
Q 024917 121 RYKDKNISVVAGIEAR---GFIFGPPIALAIGAKFVPMRKPK 159 (260)
Q Consensus 121 ~i~~~~iDvVVgve~r---G~~lA~~LA~~Lgvp~v~iRK~~ 159 (260)
.+++.++|+||+=++| |+.==...|+.+|+|+++++++.
T Consensus 192 l~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 192 LLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred HHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 3555689999999885 44333467889999999988765
No 107
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=39.38 E-value=57 Score=31.09 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCccEEEeecCchhhhHH-HHHHHhCCCEEEE
Q 024917 114 TIDLFVERYKDKNISVVAGIEARGFIFGP-PIALAIGAKFVPM 155 (260)
Q Consensus 114 l~~~La~~i~~~~iDvVVgve~rG~~lA~-~LA~~Lgvp~v~i 155 (260)
......+.+++.++|+|+++..-||++.. .-|+.+|+|+++.
T Consensus 77 ~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 77 IRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 44455566777899999999988987543 3467789998764
No 108
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=39.33 E-value=60 Score=23.07 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=27.0
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 221 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~ 221 (260)
..++++|++++ .+|.....+...|++.|-+.+.
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 45788999998 6788888899999999987633
No 109
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=39.32 E-value=39 Score=29.16 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCCeEEEEeeeccchHHHHHHH-HHHHhCCCcEEEEEE
Q 024917 188 AGERALIVDDLVATGGTLSAAI-RLLGSFQNHIFILIC 224 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~-~LL~~~Ga~vV~~av 224 (260)
.| .=+||||++.++.-+..+. ++|.....-.|++.|
T Consensus 82 aG-~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~C 118 (174)
T PF07931_consen 82 AG-NNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRC 118 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE-
T ss_pred CC-CCEEEecCccCcHHHHHHHHHHhCCCceEEEEEEC
Confidence 45 4467899999998766666 777655445555544
No 110
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.26 E-value=72 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecC
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 229 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~ 229 (260)
.+|++|+|| -+|++.++++..|.+.|++.+. ++.+.
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~---i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEIT---IVNRT 45 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEE---EEESS
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEE---EEECC
Confidence 379999986 7899999999999999998775 45565
No 111
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=37.93 E-value=70 Score=29.01 Aligned_cols=139 Identities=10% Similarity=0.139 Sum_probs=61.0
Q ss_pred chHHHHHhccccccCCCCCCCceEEechhhccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHh-C-CCE
Q 024917 75 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-G-AKF 152 (260)
Q Consensus 75 ~~~~~~l~~~iR~~p~fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~L-g-vp~ 152 (260)
+...+.+++.++... +....+. ++..+.-.|++.+..+. +.+...++|+|+++.+... ..+++.+ + +|+
T Consensus 14 ~~~~~gf~~~L~~~g-~~~~~~~-~~~~~a~~d~~~~~~~~----~~l~~~~~DlIi~~gt~aa---~~~~~~~~~~iPV 84 (294)
T PF04392_consen 14 DDIVRGFKDGLKELG-YDEKNVE-IEYKNAEGDPEKLRQIA----RKLKAQKPDLIIAIGTPAA---QALAKHLKDDIPV 84 (294)
T ss_dssp HHHHHHHHHHHHHTT---CCCEE-EEEEE-TT-HHHHHHHH----HHHCCTS-SEEEEESHHHH---HHHHHH-SS-S-E
T ss_pred HHHHHHHHHHHHHcC-CccccEE-EEEecCCCCHHHHHHHH----HHHhcCCCCEEEEeCcHHH---HHHHHhcCCCcEE
Confidence 444555555555432 2222333 34555566776655544 4566678999999965553 3333343 4 798
Q ss_pred EEEecCC----CC------CCceeeeeeeecccceeEEEEecccCCCCeE-EEEeeeccc-hHHHHHHHHHHHhCCCcEE
Q 024917 153 VPMRKPK----KL------PGEVISEEYSLEYGKDVMEMHVGAVQAGERA-LIVDDLVAT-GGTLSAAIRLLGSFQNHIF 220 (260)
Q Consensus 153 v~iRK~~----kl------~~~~~s~~y~~e~g~~~lel~~~~i~~GkrV-LIVDDVltT-G~Tl~aa~~LL~~~Ga~vV 220 (260)
++.--.. .+ |+.-++.-+....-...+++-+..++.-++| +|.|+=-++ ....+.+.+..++.|.+++
T Consensus 85 Vf~~V~dp~~~~l~~~~~~~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~ 164 (294)
T PF04392_consen 85 VFCGVSDPVGAGLVDSLDRPGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELV 164 (294)
T ss_dssp EEECES-TTTTTS-S-SSS--SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEeccChhhhhccccccCCCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 7643210 01 1111111000000001111111122334788 566655443 3556677777888898876
Q ss_pred EE
Q 024917 221 IL 222 (260)
Q Consensus 221 ~~ 222 (260)
.+
T Consensus 165 ~~ 166 (294)
T PF04392_consen 165 EI 166 (294)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 112
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=36.05 E-value=1.6e+02 Score=24.49 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=44.8
Q ss_pred hhHHHHHHHhCCCEEEEecC-CCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeecc-chHHHHHHHHHHHhCC
Q 024917 139 IFGPPIALAIGAKFVPMRKP-KKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVA-TGGTLSAAIRLLGSFQ 216 (260)
Q Consensus 139 ~lA~~LA~~Lgvp~v~iRK~-~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVlt-TG~Tl~aa~~LL~~~G 216 (260)
.++..+|+.+|..|.-++-. .-+|.+.....+ .....+.++++.+.+. .+|+++|++=. +=.|-.++.+++.+--
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v-~~~~~~~f~~~~GPif--~~ill~DEiNrappktQsAlLeam~Er~ 90 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGFPV-YDQETGEFEFRPGPIF--TNILLADEINRAPPKTQSALLEAMEERQ 90 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEEEE-EETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceeeee-eccCCCeeEeecChhh--hceeeecccccCCHHHHHHHHHHHHcCe
Confidence 67889999999888544322 223444332221 1223356788888775 46999999964 5567777888888764
Q ss_pred Cc
Q 024917 217 NH 218 (260)
Q Consensus 217 a~ 218 (260)
..
T Consensus 91 Vt 92 (131)
T PF07726_consen 91 VT 92 (131)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 113
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=35.70 E-value=75 Score=22.33 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=26.4
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 221 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~ 221 (260)
..+++.|+++++- |.....+...|++.|-..+.
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 3578899999987 77888889999999865544
No 114
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.53 E-value=73 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=29.6
Q ss_pred HHhcCCccEEEeecCchhhhHH--HHHHHhCCCEEEEecCC
Q 024917 121 RYKDKNISVVAGIEARGFIFGP--PIALAIGAKFVPMRKPK 159 (260)
Q Consensus 121 ~i~~~~iDvVVgve~rG~~lA~--~LA~~Lgvp~v~iRK~~ 159 (260)
.+++.++|+||+=++||--+-. ..|+.+|+|+++++++.
T Consensus 189 l~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 189 LFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPP 229 (249)
T ss_pred HHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 3556689999999988873333 34788999999888764
No 115
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=35.25 E-value=66 Score=23.44 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=27.4
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEE
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 221 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~ 221 (260)
+.+++.|++++. +|.+...+...|++.|...+.
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 457889999988 888988899999999976543
No 116
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.06 E-value=75 Score=23.50 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=24.6
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEE
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 221 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~ 221 (260)
.++++|+++++ +|.....++..|++.|-+.+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 85 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPVA 85 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEE
Confidence 46788999986 677777778888999986543
No 117
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=34.00 E-value=56 Score=26.95 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHHHHhcCCccEEEeec-CchhhhHHHHHHHhCCCEEE
Q 024917 106 LDTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 154 (260)
Q Consensus 106 ~dp~~~~~l~~~La~~i~~~~iDvVVgve-~rG~~lA~~LA~~Lgvp~v~ 154 (260)
.+|+.+......+ +++.++|+|+... ..|--++..+|.+||.|++.
T Consensus 73 ~~~~~~a~~l~~~---~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 73 YDPEAYADALAEL---IKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp C-HHHHHHHHHHH---HHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred cCHHHHHHHHHHH---HHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 3566544444444 3434678777664 57777999999999999863
No 118
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=33.79 E-value=68 Score=33.22 Aligned_cols=43 Identities=19% Similarity=0.033 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCccEEEeecCchhhh-HHHHHHHhCC--CEEE
Q 024917 112 RDTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGA--KFVP 154 (260)
Q Consensus 112 ~~l~~~La~~i~~~~iDvVVgve~rG~~l-A~~LA~~Lgv--p~v~ 154 (260)
..+.+.+.+.+.+.++|++++++.-||.+ -..-+++.|+ |.++
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 34555566667777999999999999965 3345566785 7653
No 119
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=33.65 E-value=84 Score=23.66 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=18.6
Q ss_pred CCCeEEEEeeeccchHHHHHHHHHHHhCC
Q 024917 188 AGERALIVDDLVATGGTLSAAIRLLGSFQ 216 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~~LL~~~G 216 (260)
.+.+||+||| .-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5678999999 4445555666777777
No 120
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=33.58 E-value=75 Score=26.68 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCccEEEee-cCchhhhHHHHHHHhCCCEE
Q 024917 114 TIDLFVERYKDKNISVVAGI-EARGFIFGPPIALAIGAKFV 153 (260)
Q Consensus 114 l~~~La~~i~~~~iDvVVgv-e~rG~~lA~~LA~~Lgvp~v 153 (260)
.++.+++.+++.++|+|+.. ...|--++..+|.+||.|++
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~v 119 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQI 119 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcc
Confidence 33444444444568877776 46788999999999999985
No 121
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.22 E-value=4.4e+02 Score=24.89 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=46.8
Q ss_pred EEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccc-hHHHH-
Q 024917 129 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGTLS- 206 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltT-G~Tl~- 206 (260)
+++-.-...-.||..+|+.+|+++.....+. . ..|+-.+.+. .. .+|+.|+||-..-.. -..+.
T Consensus 10 ~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~-F-----------pdGE~~v~i~-~~-v~g~dV~ii~s~~~~~nd~l~e 75 (323)
T PRK02458 10 IKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQ-F-----------SDGEIMINIE-ES-VRGDDIYIIQSTSFPVNDHLWE 75 (323)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEE-C-----------CCCCEEEEec-CC-cCCCeEEEEecCCCCCchHHHH
Confidence 3344445667899999999999875432211 1 2233223332 22 378899998664322 22222
Q ss_pred --HHHHHHHhCCCcEEEEE
Q 024917 207 --AAIRLLGSFQNHIFILI 223 (260)
Q Consensus 207 --aa~~LL~~~Ga~vV~~a 223 (260)
-+++.++++|++.+.++
T Consensus 76 Lll~~~alr~~~a~~i~lV 94 (323)
T PRK02458 76 LLIMIDACKRASANTVNVV 94 (323)
T ss_pred HHHHHHHHHHcCCceEEEE
Confidence 34567789999766543
No 122
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=30.10 E-value=4.9e+02 Score=24.78 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=47.6
Q ss_pred EEEeecCchhhhHHHHHHHh-CCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchHHHHH
Q 024917 129 VVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (260)
Q Consensus 129 vVVgve~rG~~lA~~LA~~L-gvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~Tl~a 207 (260)
+++-.-...-.||..+|+.+ |+|+..+..+. . ..|+-.+.+....-.+|+.|+||=-.... .-+..
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~-F-----------pDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmE 83 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDAIELGSINWRK-F-----------PDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFE 83 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeeEEEE-C-----------CCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHH
Confidence 34444455678999999996 89875443221 1 22322233332222378999888653332 22222
Q ss_pred ---HHHHHHhCCCcEEEEEE
Q 024917 208 ---AIRLLGSFQNHIFILIC 224 (260)
Q Consensus 208 ---a~~LL~~~Ga~vV~~av 224 (260)
+++.++++|++.+.++.
T Consensus 84 LLl~~dAlr~~ga~~i~~Vi 103 (326)
T PLN02297 84 QLSVIYALPKLFVASFTLVL 103 (326)
T ss_pred HHHHHHHHHHcCCCEEEEEe
Confidence 45667899998776543
No 123
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.66 E-value=2.2e+02 Score=26.96 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCccEEEeecCchh-hhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEE
Q 024917 115 IDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERAL 193 (260)
Q Consensus 115 ~~~La~~i~~~~iDvVVgve~rG~-~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVL 193 (260)
.+.+|+.+.+ ++-+|+|+-..+- ..+..++..+++|++...-... ....+.......+...-+.+. .. .+-+++.
T Consensus 53 ~~~~C~~~~~-gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~-~~~~f~i~~~p~~~~a~~~~i-~~-~~wk~va 128 (371)
T cd06388 53 TNAFCSQYSR-GVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE-GESQFVLQLRPSLRGALLSLL-DH-YEWNRFV 128 (371)
T ss_pred HHHHHHHHhC-CceEEEecCCHHHHHHHHHHhhCCCCCeeecCcccc-CCCceEEEeChhhhhHHHHHH-Hh-cCceEEE
Confidence 3344455543 7889999987766 6668999999999985432100 000111000000000000000 01 2446677
Q ss_pred EEeeeccchHHHHHHHHHHHhCCCcEEE
Q 024917 194 IVDDLVATGGTLSAAIRLLGSFQNHIFI 221 (260)
Q Consensus 194 IVDDVltTG~Tl~aa~~LL~~~Ga~vV~ 221 (260)
|+-|--..=+.+.+..+.+++.|.+++.
T Consensus 129 iiYd~~~~~~~lq~l~~~~~~~g~~v~~ 156 (371)
T cd06388 129 FLYDTDRGYSILQAIMEKAGQNGWQVSA 156 (371)
T ss_pred EEecCCccHHHHHHHHHhhHhcCCeeee
Confidence 7744221114466777777777777665
No 124
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=29.16 E-value=94 Score=29.88 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=35.6
Q ss_pred CCCCCceEEechhhccCHHH--HHHHHHHHHHHHhcC--CccEEEeecCchhhhHHHHHHHhCCCEEE
Q 024917 91 FPKPGIMFQDITTLLLDTKA--FRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVP 154 (260)
Q Consensus 91 fp~~Gi~f~Di~~ll~dp~~--~~~l~~~La~~i~~~--~iDvVVgve~rG~~lA~~LA~~Lgvp~v~ 154 (260)
.|.-|+.+......+.|... +..+.+.+ ..+++. ++|+|+++ |||. +...|...|+|++.
T Consensus 55 ~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~~~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 55 LPSGGFSYQSLRGLLRDLRAGLVGLTLGQW-RALRKWAKKGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred CCCCCccCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 44446555555555555433 22222222 223333 78999875 8888 67778889999876
No 125
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=28.71 E-value=97 Score=29.99 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCccEEEeecCchhhhH-HHHHHHhCCC
Q 024917 111 FRDTIDLFVERYKDKNISVVAGIEARGFIFG-PPIALAIGAK 151 (260)
Q Consensus 111 ~~~l~~~La~~i~~~~iDvVVgve~rG~~lA-~~LA~~Lgvp 151 (260)
+..+.+.+.+.+...++|+++.++.-||.+- ..-++..|.+
T Consensus 67 ~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 67 LKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 3345556667777789999999999999542 2345556766
No 126
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=28.70 E-value=2.4e+02 Score=26.09 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCccEEEee----cCchhhhHHHHHHHhCCCEE-EEec
Q 024917 114 TIDLFVERYKDKNISVVAGI----EARGFIFGPPIALAIGAKFV-PMRK 157 (260)
Q Consensus 114 l~~~La~~i~~~~iDvVVgv----e~rG~~lA~~LA~~Lgvp~v-~iRK 157 (260)
.+..++..++..++|.|++= +...=-.+..+|..||.|.+ +++|
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 44555666666678877774 22333778899999999975 3444
No 127
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.84 E-value=1.2e+02 Score=27.91 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCccEEEeecCchhhhH-HHHHHHhCCCEEEE
Q 024917 115 IDLFVERYKDKNISVVAGIEARGFIFG-PPIALAIGAKFVPM 155 (260)
Q Consensus 115 ~~~La~~i~~~~iDvVVgve~rG~~lA-~~LA~~Lgvp~v~i 155 (260)
...+.+.++..++|+|++..+.+++.. ...++..|+|+++.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 334455666678999999887665442 23356679997664
No 128
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=27.43 E-value=2.5e+02 Score=25.51 Aligned_cols=112 Identities=7% Similarity=0.003 Sum_probs=59.5
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCccEEEeecCchhhhH-HHHHHHhCCCEEEEec-CCCCCCceeeeeeeecccceeEEEE
Q 024917 105 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFG-PPIALAIGAKFVPMRK-PKKLPGEVISEEYSLEYGKDVMEMH 182 (260)
Q Consensus 105 l~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA-~~LA~~Lgvp~v~iRK-~~kl~~~~~s~~y~~e~g~~~lel~ 182 (260)
-.+|+.....++.|.+ +.++++|+|.-..+..++ ..++...++|++..-- ......+.+ ++.... ......
T Consensus 49 ~~~p~~a~~~~~~Li~---~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~---F~~~~~-~~~~~~ 121 (334)
T cd06356 49 QSDNERYQQYAQRLAL---QDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNT---FCTGAT-PAQQFS 121 (334)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCE---EEeCCC-cHHHHH
Confidence 3578777777666643 347999999988877554 5578888999875311 111111111 111000 000000
Q ss_pred e--cc-c-CCCCeEEEE-eeeccchHHHHHHHHHHHhCCCcEEEEE
Q 024917 183 V--GA-V-QAGERALIV-DDLVATGGTLSAAIRLLGSFQNHIFILI 223 (260)
Q Consensus 183 ~--~~-i-~~GkrVLIV-DDVltTG~Tl~aa~~LL~~~Ga~vV~~a 223 (260)
. .. . ..+++|.+| .|--..........+.+++.|.+++...
T Consensus 122 ~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~ 167 (334)
T cd06356 122 TLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEE 167 (334)
T ss_pred HHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeee
Confidence 0 00 1 124555555 3433333445567788899999888643
No 129
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=27.10 E-value=1.7e+02 Score=26.84 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHH-HHHHHhCCCEEEEecCCCC-CCc-eeeeeeeecccceeEEEEec
Q 024917 108 TKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGP-PIALAIGAKFVPMRKPKKL-PGE-VISEEYSLEYGKDVMEMHVG 184 (260)
Q Consensus 108 p~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~-~LA~~Lgvp~v~iRK~~kl-~~~-~~s~~y~~e~g~~~lel~~~ 184 (260)
|+......+.|. .+ ++++|+|+-..+-..+. .++...++|++..-..... ..+ ++.... ......-.+-.-
T Consensus 45 ~~~a~~~~~~li---~~-~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~~~ 118 (336)
T cd06339 45 AAGAAAAARQAV---AE-GADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGL--SPEDEARRAAEY 118 (336)
T ss_pred cccHHHHHHHHH---Hc-CCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecC--ChHHHHHHHHHH
Confidence 444444444443 23 78899998777765544 6777889998753211111 011 111000 000000000000
Q ss_pred cc-CCCCeEEEEeeeccchHHH-HHHHHHHHhCCCcEEEEEE
Q 024917 185 AV-QAGERALIVDDLVATGGTL-SAAIRLLGSFQNHIFILIC 224 (260)
Q Consensus 185 ~i-~~GkrVLIVDDVltTG~Tl-~aa~~LL~~~Ga~vV~~av 224 (260)
.. ...++|.++-+=-..|..+ .+..+.+++.|.++++...
T Consensus 119 ~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~~ 160 (336)
T cd06339 119 ARSQGKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIES 160 (336)
T ss_pred HHhcCccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeEe
Confidence 11 1346788774433455444 5566888999999887643
No 130
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=26.95 E-value=1.8e+02 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=24.8
Q ss_pred HHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE
Q 024917 118 FVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 154 (260)
Q Consensus 118 La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~ 154 (260)
+.+.+...++|+|+.-. ....|..+|+.+|+|++.
T Consensus 84 l~~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~ 118 (392)
T TIGR01426 84 LEEAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVIS 118 (392)
T ss_pred HHHHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEE
Confidence 34445556899997744 345688899999999864
No 131
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=26.04 E-value=3e+02 Score=26.27 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=44.6
Q ss_pred CchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeeccchH-HH---HHHHH
Q 024917 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG-TL---SAAIR 210 (260)
Q Consensus 135 ~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVltTG~-Tl---~aa~~ 210 (260)
...-.+|..+|+.||+|+.....++ . ..|+-.+.+ ..-.+|+.|.|+...-.... .+ .-+++
T Consensus 11 ~s~~~La~~ia~~l~~~l~~~~~~r-F-----------~DGE~~V~i--~EsVrg~dVfI~qs~~~pvnd~lmELLi~id 76 (314)
T COG0462 11 SSNPELAEKIAKRLGIPLGKVEVKR-F-----------PDGEIYVRI--EESVRGKDVFIIQSTSPPVNDNLMELLIMID 76 (314)
T ss_pred CCCHHHHHHHHHHhCCCcccceeEE-c-----------CCCcEEEEe--cccccCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 3444789999999999986443221 1 123222222 23347888887665544222 22 23567
Q ss_pred HHHhCCCcEEEEEE
Q 024917 211 LLGSFQNHIFILIC 224 (260)
Q Consensus 211 LL~~~Ga~vV~~av 224 (260)
.++++||+.+.++.
T Consensus 77 A~k~asA~~It~Vi 90 (314)
T COG0462 77 ALKRASAKRITAVI 90 (314)
T ss_pred HHHhcCCceEEEEe
Confidence 77889998877643
No 132
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=25.81 E-value=2e+02 Score=25.74 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEe
Q 024917 113 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 113 ~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iR 156 (260)
...+.+.+.++..++|+|++- ..+++...|+..|+|.+.+-
T Consensus 81 ~~~~~~~~~l~~~~pDlVIsD---~~~~~~~aa~~~giP~i~i~ 121 (318)
T PF13528_consen 81 RRIRREIRWLREFRPDLVISD---FYPLAALAARRAGIPVIVIS 121 (318)
T ss_pred HHHHHHHHHHHhcCCCEEEEc---ChHHHHHHHHhcCCCEEEEE
Confidence 344445566677789999986 45667788899999987543
No 133
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.36 E-value=1.5e+02 Score=20.72 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=28.4
Q ss_pred eEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEe
Q 024917 191 RALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 227 (260)
Q Consensus 191 rVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve 227 (260)
+++|+.++ ||.-+...++.+++.|..+..-|++-.
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~ 36 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTP 36 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECC
Confidence 57778877 889999999999999997666666644
No 134
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=24.87 E-value=2.4e+02 Score=25.62 Aligned_cols=43 Identities=7% Similarity=0.022 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCccEEEeecCchhhh-HHHHHHHhCCCEEEE
Q 024917 113 DTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAKFVPM 155 (260)
Q Consensus 113 ~l~~~La~~i~~~~iDvVVgve~rG~~l-A~~LA~~Lgvp~v~i 155 (260)
.+...+.+.+...++|+|++...+...+ +...|+.+|+|++..
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 3445555666667899999986555544 456677789998764
No 135
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=24.85 E-value=1.1e+02 Score=22.58 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=24.9
Q ss_pred CeEEEEeeeccchHHHHHHHHHHHhC-C-CcEEEEEE
Q 024917 190 ERALIVDDLVATGGTLSAAIRLLGSF-Q-NHIFILIC 224 (260)
Q Consensus 190 krVLIVDDVltTG~Tl~aa~~LL~~~-G-a~vV~~av 224 (260)
..+.+|||...+=.++.++++.+++. + .+++.++-
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 45788888999999999999999886 3 44544433
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=53 Score=34.47 Aligned_cols=61 Identities=25% Similarity=0.487 Sum_probs=35.3
Q ss_pred CCCCCceEEechhhccCHHHHHHHHHHHHHHHhcC------Ccc-----EEEeecCchh-hhHHHHHHHhCCCEEEE
Q 024917 91 FPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDK------NIS-----VVAGIEARGF-IFGPPIALAIGAKFVPM 155 (260)
Q Consensus 91 fp~~Gi~f~Di~~ll~dp~~~~~l~~~La~~i~~~------~iD-----vVVgve~rG~-~lA~~LA~~Lgvp~v~i 155 (260)
||.+.+.|.|+..+ -..+..+++.+.. ++.. ++. .+-|++--|= .||.++|.++|+||+-+
T Consensus 182 ~~~snv~f~diGG~---d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL---DKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh---HHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 55555566665543 4455556555543 3221 111 3344444333 89999999999999754
No 137
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=24.34 E-value=2.5e+02 Score=25.87 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCccEEEeecCchhhh-HHHHHHHhCCCEEEE
Q 024917 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAKFVPM 155 (260)
Q Consensus 110 ~~~~l~~~La~~i~~~~iDvVVgve~rG~~l-A~~LA~~Lgvp~v~i 155 (260)
.+-.+...+.+.++..++|+|++.-.+.-.+ |...|..+|+|++.+
T Consensus 70 ~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 70 ITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 3334445666777778899999986555544 566678899998754
No 138
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=23.97 E-value=3.2e+02 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=33.6
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCccEEEeecCchh-hhHHHHHHHhCCC
Q 024917 105 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAK 151 (260)
Q Consensus 105 l~dp~~~~~l~~~La~~i~~~~iDvVVgve~rG~-~lA~~LA~~Lgvp 151 (260)
+.+++..+.+++.+++.++..++=++.|..-.|= .|+..+++.+|.+
T Consensus 2 ~~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 2 NPDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3578888999999998876544434455444443 8899999999864
No 139
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.77 E-value=1.1e+02 Score=28.63 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccC
Q 024917 108 TKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ 187 (260)
Q Consensus 108 p~~~~~l~~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~ 187 (260)
.|.++..+..|... .|+|+. -...--....+|...++|++-+--....|.+.+-.-|.+.. +.+. .
T Consensus 85 gEsl~Dt~~~l~~~-----~D~iv~-R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e-------~~g~-l 150 (304)
T PRK00779 85 GEPIEDTARVLSRY-----VDAIMI-RTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYE-------HRGS-L 150 (304)
T ss_pred CcCHHHHHHHHHHh-----CCEEEE-cCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHH-------HhCC-c
Confidence 45555555544432 455543 22222345677888899988765322233333221111100 0133 3
Q ss_pred CCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEE
Q 024917 188 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFIL 222 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~ 222 (260)
+|.+|.+|=| .+.|+...+.++...|+++.-+
T Consensus 151 ~gl~i~~vGd---~~~v~~Sl~~~l~~~g~~v~~~ 182 (304)
T PRK00779 151 KGLKVAWVGD---GNNVANSLLLAAALLGFDLRVA 182 (304)
T ss_pred CCcEEEEEeC---CCccHHHHHHHHHHcCCEEEEE
Confidence 7899999999 4679999999999999876554
No 140
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.70 E-value=5.2e+02 Score=23.99 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCccEEEeec----CchhhhHHHHHHHhCCCEEEEecCC
Q 024917 116 DLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVPMRKPK 159 (260)
Q Consensus 116 ~~La~~i~~~~iDvVVgve----~rG~~lA~~LA~~Lgvp~v~iRK~~ 159 (260)
+.|++.+++.++|.||=.. .+=---|..+|+..|+|++-.+++.
T Consensus 56 e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~ 103 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPP 103 (257)
T ss_pred HHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCc
Confidence 4566777778898887532 2323455667888999987655543
No 141
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=23.24 E-value=1.1e+02 Score=29.46 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCccEEEeecCchh--hhHHHHHHHhCCCEEEEec
Q 024917 113 DTIDLFVERYKDKNISVVAGIEARGF--IFGPPIALAIGAKFVPMRK 157 (260)
Q Consensus 113 ~l~~~La~~i~~~~iDvVVgve~rG~--~lA~~LA~~Lgvp~v~iRK 157 (260)
...+.+.++. ..+++.|+++|.+|. ..+..+|-.+|+|++-.--
T Consensus 79 ~a~~~le~~~-g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDaD~ 124 (353)
T PF06032_consen 79 RAVEALEKYL-GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDADG 124 (353)
T ss_dssp HHHHHHHHHT-T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB-S
T ss_pred HHHHHHHHhh-CCCccEEeehhcCccchhHHHHHHHHhCCCEEcCCc
Confidence 3444444433 357999999999999 3444567789999985443
No 142
>PRK04940 hypothetical protein; Provisional
Probab=23.24 E-value=4e+02 Score=23.20 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=34.3
Q ss_pred cCHH-HHHHHHHHHHHHHhcC--CccEEEeecCchhhhHHHHHHHhCCCEEEEe
Q 024917 106 LDTK-AFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 106 ~dp~-~~~~l~~~La~~i~~~--~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iR 156 (260)
..|+ ++..+.+.+++..... +...+||.--||| +|..+|...|+|-|.+-
T Consensus 37 ~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGy-yA~~La~~~g~~aVLiN 89 (180)
T PRK04940 37 LHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGY-WAERIGFLCGIRQVIFN 89 (180)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHH-HHHHHHHHHCCCEEEEC
Confidence 4554 4554555554433321 4579999999998 57899999999987664
No 143
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=23.03 E-value=2.1e+02 Score=22.06 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHHHhcCCccEEEeecCchh-hhHHHHHHHhC-CCEEEE
Q 024917 117 LFVERYKDKNISVVAGIEARGF-IFGPPIALAIG-AKFVPM 155 (260)
Q Consensus 117 ~La~~i~~~~iDvVVgve~rG~-~lA~~LA~~Lg-vp~v~i 155 (260)
.+...+++.++|+|-+-...++ .++...++.++ +|++..
T Consensus 65 ~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 65 RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 5566777789999999887774 55656667777 787753
No 144
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=22.61 E-value=4.6e+02 Score=27.24 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEE
Q 024917 187 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 221 (260)
Q Consensus 187 ~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~ 221 (260)
..|++|+|+||--+ ......++|+..|..+..
T Consensus 534 ~~g~~ili~d~~~~---~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 534 LAGKRLLYVEPNSA---AAQATLDILSETPLEVTY 565 (919)
T ss_pred cCCCeEEEEeCCHH---HHHHHHHHHHHCCCEEEE
Confidence 47899999999654 445567788888887654
No 145
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=22.31 E-value=64 Score=30.44 Aligned_cols=71 Identities=23% Similarity=0.187 Sum_probs=51.8
Q ss_pred ccCCCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEEEEEEecCc----cCcceEEeeeee--ccCceeeeee-ccccc
Q 024917 185 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA----CFSSYILLFSYA--TNGFTQFTIT-SEGVD 257 (260)
Q Consensus 185 ~i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~avlve~~~----~~~e~~~L~~~~--~~~~~~~~~~-~~~~~ 257 (260)
.+++|..||+- .+.|+-=..++++++..|+.+++.+.--++.. ...++ ++.++ +-.-+..+|| -.|||
T Consensus 143 ~vkpGhtVlvh---aAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h--~I~y~~eD~v~~V~kiTngKGVd 217 (336)
T KOG1197|consen 143 NVKPGHTVLVH---AAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEH--PIDYSTEDYVDEVKKITNGKGVD 217 (336)
T ss_pred CCCCCCEEEEE---eccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcc--eeeccchhHHHHHHhccCCCCce
Confidence 56799999986 78888889999999999999999887766654 33343 34443 4444566777 67888
Q ss_pred CCC
Q 024917 258 AGM 260 (260)
Q Consensus 258 ~~~ 260 (260)
+-|
T Consensus 218 ~vy 220 (336)
T KOG1197|consen 218 AVY 220 (336)
T ss_pred eee
Confidence 743
No 146
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=22.24 E-value=1.5e+02 Score=21.97 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=24.0
Q ss_pred cCCCCeEEEEeeeccchHHHHHHHHHHHhCCCc
Q 024917 186 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNH 218 (260)
Q Consensus 186 i~~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~ 218 (260)
+.+++.|+++ ..+|.....+.+.|++.|.+
T Consensus 58 ~~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 58 LPDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 3467788886 56888888888999999986
No 147
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=22.14 E-value=2.6e+02 Score=26.23 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCccEEEeecCchh-hhHHHHHHHhCCCEEEEe
Q 024917 114 TIDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 114 l~~~La~~i~~~~iDvVVgve~rG~-~lA~~LA~~Lgvp~v~iR 156 (260)
+.+.+|..+.+ ++-+|+|+-..+. ..+..++..+++|++...
T Consensus 46 ~~~~~C~~~~~-GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~ 88 (370)
T cd06389 46 VTNAFCSQFSR-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPS 88 (370)
T ss_pred HHHHHHHHhhc-CcEEEEecCCHHHHHHHHHhhccCCCCeeeec
Confidence 33444555543 7889999977665 666889999999998643
No 148
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=21.69 E-value=2.3e+02 Score=25.45 Aligned_cols=39 Identities=13% Similarity=-0.130 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCccEEEeecCchhhhHHHHHHHhCCCEEE
Q 024917 116 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 154 (260)
Q Consensus 116 ~~La~~i~~~~iDvVVgve~rG~~lA~~LA~~Lgvp~v~ 154 (260)
..+.+.+++.++|+|++.......++...++.+++|+++
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 344556677789999997544444555667888999865
No 149
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.50 E-value=2.7e+02 Score=26.05 Aligned_cols=44 Identities=5% Similarity=0.033 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCccEEEeecCchh-hhHHHHHHHhCCCEEEEe
Q 024917 113 DTIDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMR 156 (260)
Q Consensus 113 ~l~~~La~~i~~~~iDvVVgve~rG~-~lA~~LA~~Lgvp~v~iR 156 (260)
...+.+++..++.++|.|+++--|.. -.|..+|..+++|++.+-
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VP 109 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFP 109 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEec
Confidence 33444456667778999999976555 677788888899987653
No 150
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=20.94 E-value=5.4e+02 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=19.9
Q ss_pred CCCeEEEEeeeccchHHHHHHHHHHHhCCCcEE
Q 024917 188 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIF 220 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV 220 (260)
.+.+||||||--..-. .+..+|++.|.+++
T Consensus 680 ~~~~vLivdD~~~~~~---~l~~~L~~~g~~v~ 709 (914)
T PRK11466 680 DGLRLLLIEDNPLTQR---ITAEMLNTSGAQVV 709 (914)
T ss_pred CCcceEEEeCCHHHHH---HHHHHHHhcCCceE
Confidence 5779999999644433 34455667777654
No 151
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=20.79 E-value=2.1e+02 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCccEEEeecCch-hhhHHHHHHHhCCCEEEEec
Q 024917 115 IDLFVERYKDKNISVVAGIEARG-FIFGPPIALAIGAKFVPMRK 157 (260)
Q Consensus 115 ~~~La~~i~~~~iDvVVgve~rG-~~lA~~LA~~Lgvp~v~iRK 157 (260)
.+.++....+.+.|+|+|+-.|- +-.|..+|..+|+||+.+-.
T Consensus 73 v~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT 116 (360)
T COG0371 73 VERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPT 116 (360)
T ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecC
Confidence 34444545545789999997544 47899999999999987543
No 152
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=20.60 E-value=2e+02 Score=23.62 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHh--cCCccEEEeecCchh----hhHHHHHHHhCCCEEEEec
Q 024917 111 FRDTIDLFVERYK--DKNISVVAGIEARGF----IFGPPIALAIGAKFVPMRK 157 (260)
Q Consensus 111 ~~~l~~~La~~i~--~~~iDvVVgve~rG~----~lA~~LA~~Lgvp~v~iRK 157 (260)
+..+.+.+.+.+. ..+..-|+-..++|| .++..+|..++.|..++-.
T Consensus 73 l~~Lv~~~~~~v~~~~~~~~~v~~n~TGGfK~~~~~~~~~g~~~~~~v~Yi~E 125 (136)
T PF09651_consen 73 LRNLVRWVAEEVKNYKGRGYEVIFNATGGFKAEIAYLTLLGMLYGDPVYYIFE 125 (136)
T ss_dssp HHHHHHHTHHHHHHHHHTT-EEEEE-SSS-HHHHHHHHHHHHHT--EEEEEET
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCChHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3445555555554 123345677789999 7888889999999887654
No 153
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=20.34 E-value=1.8e+02 Score=26.58 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=26.4
Q ss_pred CCCeEEEEeeeccchHHHHHHHHHHHhCCCcEEEE
Q 024917 188 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFIL 222 (260)
Q Consensus 188 ~GkrVLIVDDVltTG~Tl~aa~~LL~~~Ga~vV~~ 222 (260)
+|++|+|| -+|++.++++..|.+.|++.+.+
T Consensus 124 ~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I 154 (282)
T TIGR01809 124 AGFRGLVI----GAGGTSRAAVYALASLGVTDITV 154 (282)
T ss_pred CCceEEEE----cCcHHHHHHHHHHHHcCCCeEEE
Confidence 68899866 88999999999999999876653
No 154
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.13 E-value=81 Score=27.40 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=36.8
Q ss_pred CccEEEeecCchhhhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEEecccCCCCeEEEEeeecc-chHH
Q 024917 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVA-TGGT 204 (260)
Q Consensus 126 ~iDvVVgve~rG~~lA~~LA~~Lgvp~v~iRK~~kl~~~~~s~~y~~e~g~~~lel~~~~i~~GkrVLIVDDVlt-TG~T 204 (260)
+.|++++....+ .+-...+..++.+.+.-.-...+ .. ...+.+.+.+-|++++|+++ +|+-
T Consensus 85 ~~Dv~vp~A~~~-~I~~~~~~~l~~~~v~~~AN~~~----~~-------------~~~~~~L~~~Gi~~~Pd~~~NaGGv 146 (200)
T cd01075 85 DADVFAPCALGG-VINDDTIPQLKAKAIAGAANNQL----AD-------------PRHGQMLHERGILYAPDYVVNAGGL 146 (200)
T ss_pred cCCEEEeccccc-ccCHHHHHHcCCCEEEECCcCcc----CC-------------HhHHHHHHHCCCEEeCceeeeCcCc
Confidence 577777665554 44445556677666543222110 00 11123345667999999999 7754
Q ss_pred HHHHHHH
Q 024917 205 LSAAIRL 211 (260)
Q Consensus 205 l~aa~~L 211 (260)
+....+.
T Consensus 147 ~~~~~e~ 153 (200)
T cd01075 147 INVADEL 153 (200)
T ss_pred eeehhHH
Confidence 4444333
Done!