BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024918
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 138/239 (57%), Gaps = 4/239 (1%)
Query: 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV 78
P K+I+D DPGIDD++ I +A PE+E+L +TT+ GN + E T+NA + ++AG GV
Sbjct: 2 PRKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGV 61
Query: 79 PVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV-SEYPGE 136
PVA G +PL G R A HG GMGN+S P K D ++A + ++D + S P
Sbjct: 62 PVAAGCTKPLVRGV-RNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKT 120
Query: 137 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVV 196
++++ G LTN+A+A++ + +VK +V++GG + GN +P AE N++ DPEAA +V
Sbjct: 121 ITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHT-GNASPVAEFNVFIDPEAAHIV 179
Query: 197 FTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGN 255
F N+ +VG+++T T A +R+ + + + FY + K +G
Sbjct: 180 FNESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYGK 238
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Pyrimidine- Specific Nucleoside Hydrolase
Length = 311
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 133/234 (56%), Gaps = 3/234 (1%)
Query: 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81
IID D DD +++ + + ++++ +T + GN++ E +NAL E +PV
Sbjct: 4 FIIDCDTAEDDVLSLYLLLKN-NIDVVAVTIVEGNISYEQEVKNALWALEQVNRE-IPVY 61
Query: 82 EGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 141
G+ +PL V E HG G+G++++ P + K +K+A+ ++D +EY GE+ LA
Sbjct: 62 PGANKPLLKNYITV-EKVHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLA 120
Query: 142 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 201
+ PLTNLALA D+S K+K + V+GGA F +GN+ P AE NI+ DP+AA +VF +G
Sbjct: 121 ISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNIWVDPDAAKIVFNAGF 180
Query: 202 NIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGN 255
+I ++ ++ +TD ++ ++ K R +L M YR + ++G+
Sbjct: 181 DITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGH 234
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
Length = 333
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 137/241 (56%), Gaps = 3/241 (1%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMA 73
GS K+I+D DPG DD++ I+MA + P +++LG+T + GN T + N L +C+
Sbjct: 18 GSHMEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL 77
Query: 74 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY 133
VPV G P+P+ + VA+ HG G+ P + +A ++++D +
Sbjct: 78 EI-NVPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMAS 135
Query: 134 PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAA 193
G+++++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA
Sbjct: 136 DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAA 194
Query: 194 DVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVH 253
VVFTSG + ++G+++T Q T + ++ G +L D+ F ++ G+
Sbjct: 195 RVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLA 254
Query: 254 G 254
G
Sbjct: 255 G 255
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKN|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
Length = 316
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 137/241 (56%), Gaps = 3/241 (1%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMA 73
GS K+I+D DPG DD++ I+MA + P +++LG+T + GN T + N L +C+
Sbjct: 1 GSHMEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKL 60
Query: 74 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY 133
VPV G P+P+ + VA+ HG G+ P + +A ++++D +
Sbjct: 61 EI-NVPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMAS 118
Query: 134 PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAA 193
G+++++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA
Sbjct: 119 DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAA 177
Query: 194 DVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVH 253
VVFTSG + ++G+++T Q T + ++ G +L D+ F ++ G+
Sbjct: 178 RVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLA 237
Query: 254 G 254
G
Sbjct: 238 G 238
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|B Chain B, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|C Chain C, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|D Chain D, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
Length = 313
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 135/234 (57%), Gaps = 3/234 (1%)
Query: 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
K+I+D DPG DD++ I+MA + P +++LG+T + GN T + N L +C+ VPV
Sbjct: 5 KIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPV 63
Query: 81 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSIL 140
G P+P+ + VA+ HG G+ P + +A ++++D + G+++++
Sbjct: 64 YAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLV 122
Query: 141 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200
+GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA VVFTSG
Sbjct: 123 PVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAARVVFTSG 181
Query: 201 ANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHG 254
+ ++G+++T Q T + ++ G +L D+ F ++ G+ G
Sbjct: 182 VPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAG 235
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase
pdb|1MAS|B Chain B, Purine Nucleoside Hydrolase
pdb|2MAS|A Chain A, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|B Chain B, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|C Chain C, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|D Chain D, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
Length = 314
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 4/224 (1%)
Query: 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
K+I+D DPG+DD++ IL+A PE+E+L +TT+ GN T TRNA + ++AG GVP+
Sbjct: 3 KIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPI 62
Query: 81 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV-SEYPGEVS 138
A G +PL K A HG GMG ++ K D ++A ++D V S P ++
Sbjct: 63 AAGCDKPLV-RKIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTIT 121
Query: 139 ILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFT 198
++ G LTN+A+A + + +VK +V++GG + GN AE NI DPEAA +VF
Sbjct: 122 LVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHE-GNATSVAEFNIIIDPEAAHIVFN 180
Query: 199 SGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFY 242
+ +VG+++T Q T +++ + + ++ +Y
Sbjct: 181 ESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYY 224
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 5/235 (2%)
Query: 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
K+I+D+D DD++ IL+A + ++LG+T + GNV +NAL E G VPV
Sbjct: 3 KVIVDSDTATDDTIAILLASRF--FQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPV 60
Query: 81 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSIL 140
GS P+ G R E HGS+GM N + P + ++A + ++ E+ GE+ IL
Sbjct: 61 YLGSQRPILGNW-RTVEEVHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEHEGELEIL 119
Query: 141 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200
A+ PLTN+ALA +D S +VK I ++GGA F+ GN P AE N + DPEAA +V +G
Sbjct: 120 AISPLTNIALAYLKDPSVVKRVKKIWIMGGA-FSKGNTTPIAEFNFWVDPEAAKIVLDAG 178
Query: 201 ANIAVVGINIT-TQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHG 254
+I +V + L + D+ + + + ++ K +++ K+ G+ G
Sbjct: 179 FDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISG 233
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 133 bits (335), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 2/225 (0%)
Query: 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81
+++D DPG DD++ I++A +PEL++ +T+ GN T E RN L + + +PVA
Sbjct: 16 ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 75
Query: 82 EGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 141
G+ +PL + +A+ HG G+ +L P + A E + + E V+I++
Sbjct: 76 GGAVKPLMR-ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVS 134
Query: 142 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 201
GP TN+AL + SK+ IV++GGA LGN PAAE NIY DPEAA++VF SG
Sbjct: 135 TGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFNIYVDPEAAEIVFQSGI 193
Query: 202 NIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWH 246
+ + G+++T + ++ D R ++ ++ F+ ++H
Sbjct: 194 PVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYH 238
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 2/225 (0%)
Query: 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81
+++D DPG DD++ I++A +PEL++ +T+ GN T E RN L + + +PVA
Sbjct: 6 ILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVA 65
Query: 82 EGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 141
G+ +PL + +A+ HG G+ +L P + A E + + E V+I++
Sbjct: 66 GGAVKPLMR-ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVS 124
Query: 142 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGA 201
GP TN+AL + SK+ IV++GGA LGN PAAE NIY DPEAA++VF SG
Sbjct: 125 TGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFNIYVDPEAAEIVFQSGI 183
Query: 202 NIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWH 246
+ + G+++T + ++ D R ++ ++ F+ ++H
Sbjct: 184 PVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYH 228
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|B Chain B, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|C Chain C, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|D Chain D, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
Length = 360
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMA 73
GS KLIIDTD G DD++ I++A P++E++ +T ++GNV N L ++
Sbjct: 1 GSHMVHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLY 60
Query: 74 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPK--AKKCDKNASEFLVDKVS 131
+P G+ PL G + V GSDG G+ P + A + ++A+ ++ +
Sbjct: 61 DA-DIPFFRGAEGPLVGERETVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILE 119
Query: 132 E-YPGE---VSILALGPLTNLALAIKRDSSFASK-----VKNIVVLGGAFFALGNVNPAA 182
E P + ++ALGPLTN+ALA++ + SK + IV++ G + GN N AA
Sbjct: 120 EAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTSESKGNSNMAA 179
Query: 183 EANIYGDPEAADVVF 197
E N + DPEA VV
Sbjct: 180 EFNSHCDPEAGVVVL 194
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
pdb|2C40|B Chain B, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
Length = 312
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 104/225 (46%), Gaps = 16/225 (7%)
Query: 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80
K+ + D G+DD +++ + Q +E+ G++ I + E A + + + G + V
Sbjct: 3 KVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEV 62
Query: 81 AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD----KNASEFLVDKVSEYPGE 136
A + +G P ++ + + + + K K A L++ + + +
Sbjct: 63 AASNS---RGKNPFPKDWRMHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEK 119
Query: 137 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP-----AAEANIYGDPE 191
++L GPLT+LA A+ +K+K +V +GG F GNV+ AE N + DPE
Sbjct: 120 TTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEHDGTAEWNSFWDPE 179
Query: 192 AADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLG 236
A V+ + I ++ + T QV LT +++R+ + + +G
Sbjct: 180 AVARVWEANIEIDLITLESTNQVPLT----IDIREQWAKERKYIG 220
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 71
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 11 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 67
Query: 72 M---AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASE---- 124
M P P+ + + + A D M +++ P + DK +E
Sbjct: 68 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNI-PENVELWDKIKAENEKY 126
Query: 125 ----FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV- 178
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 127 EGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVF 186
Query: 179 ----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQ 233
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 187 LPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQ 235
Query: 234 LLGDMCKF 241
G+ F
Sbjct: 236 RFGEQTNF 243
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 71
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 12 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 68
Query: 72 M---AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASE---- 124
M P P+ + + + A D M +++ P + DK +E
Sbjct: 69 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNI-PENVELWDKIKAENEKY 127
Query: 125 ----FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV- 178
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 128 EGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVF 187
Query: 179 ----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQ 233
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 188 LPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQ 236
Query: 234 LLGDMCKF 241
G+ F
Sbjct: 237 RFGEQTNF 244
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 71
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 12 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 68
Query: 72 M---AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASE---- 124
M P P+ + + + A D M +++ P + DK +E
Sbjct: 69 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNI-PENVELWDKIKAENEKY 127
Query: 125 ----FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV- 178
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 128 EGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVF 187
Query: 179 ----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQ 233
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 188 LPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQ 236
Query: 234 LLGDMCKF 241
G+ F
Sbjct: 237 RFGEQTNF 244
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 14 GSSTNPAKLIIDTDPGIDDSMT-ILMAFQTPELEILGLTTIFGNVTTEDATR-NALTLCE 71
GS+ N +++D D +DD + +L+A T ++ ++G + E+ +C
Sbjct: 11 GSAKN---VVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCL 67
Query: 72 M---AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASE---- 124
M P P+ + + + A D M +++ P + DK +E
Sbjct: 68 MHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNI-PENVELWDKIKAENEKY 126
Query: 125 ----FLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAFFALGNV- 178
L D V +V+I GPL+N+A I K F SKV+ V++GGA GNV
Sbjct: 127 EGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVF 186
Query: 179 ----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQ 233
+ AE NIY DP +A VF G + ++ T V + + YVQ
Sbjct: 187 LPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV-----------RSPYVQ 235
Query: 234 LLGDMCKF 241
G+ F
Sbjct: 236 RFGEQTNF 243
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 114 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 172
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 121 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 180
Query: 173 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 226
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 181 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 230
Query: 227 SKGRYVQLLGDMCKF 241
+ YVQ G+ F
Sbjct: 231 -RSPYVQRFGEQTNF 244
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 31 DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 90
D+S T TPEL F V +D LT G P A+ P+PL+
Sbjct: 460 DNSYTTRFIDTTPEL--------FQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLEN 511
Query: 91 GKPRVAEFAHGS---DGMGNI--SLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 141
V +A+G+ DG + +L P K + +N L+ + G S+LA
Sbjct: 512 AARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLA 567
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 31 DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 90
D+S T TPEL F V +D LT G P A+ P+PL+
Sbjct: 460 DNSYTTRFIDTTPEL--------FQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLEN 511
Query: 91 GKPRVAEFAHGS---DGMGNI--SLTPPKAKKCDKNASEFLVDKVSEYPGEVSILA 141
V +A+G+ DG + +L P K + +N L+ + G S+LA
Sbjct: 512 AARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLA 567
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 124 EFLVDKVSEYPGEVSILALGPLTN--LALAIKR 154
E + ++V E P +++LA GPLT+ LA A+KR
Sbjct: 115 EVVREEVREIPPGITVLATGPLTSEALAEALKR 147
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 124 EFLVDKVSEYPGEVSILALGPLTN--LALAIKR 154
E + ++V E P +++LA GPLT+ LA A+KR
Sbjct: 115 EVVREEVREIPPGITVLATGPLTSEALAEALKR 147
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 54 FGNVTTEDATRNALTLCEMAGCPGVPV--AEGSPEPLKGGKPRVAEFAHGSDGMGNISLT 111
FG + TE A R + M C V E +K KP++ HG G I
Sbjct: 97 FGYLLTEIAERYGANV-HMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPL 155
Query: 112 PPKAKKCDKNASEFLVDKVSEYPG 135
+ C + F+VD V+ G
Sbjct: 156 KAIGEACRTEDALFIVDAVATIGG 179
>pdb|3HX6|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
pdb|3HX6|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
Length = 570
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 8 GSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEIL---GLTTIFGNVTTEDATR 64
G G+ T+PA + + + G+D + +F P + L + GN + +
Sbjct: 163 GKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDK 222
Query: 65 NALTLCEM-----------AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNI 108
AL + +M G GVP SP VA++A+ D GN+
Sbjct: 223 AALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNL 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,939,746
Number of Sequences: 62578
Number of extensions: 323897
Number of successful extensions: 918
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 28
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)