Query 024918
Match_columns 260
No_of_seqs 160 out of 1081
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 7.5E-72 1.6E-76 504.6 25.8 242 18-260 1-242 (311)
2 PRK09955 rihB ribonucleoside h 100.0 2E-69 4.4E-74 494.2 28.1 240 18-260 2-241 (313)
3 PLN02717 uridine nucleosidase 100.0 4.2E-69 9.2E-74 493.0 28.1 241 20-260 1-242 (316)
4 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 1.7E-66 3.6E-71 473.7 27.1 240 21-260 1-240 (304)
5 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 1.9E-66 4.2E-71 472.9 26.2 237 21-260 1-237 (302)
6 PRK10443 rihA ribonucleoside h 100.0 4.2E-66 9.1E-71 472.3 28.4 240 19-260 2-242 (311)
7 cd02653 nuc_hydro_3 NH_3: A su 100.0 2.3E-66 5.1E-71 475.6 26.6 238 21-260 1-242 (320)
8 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 5.3E-66 1.1E-70 470.5 28.0 239 20-260 1-243 (306)
9 PRK10768 ribonucleoside hydrol 100.0 5.5E-65 1.2E-69 463.8 26.8 234 19-260 2-235 (304)
10 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 5.3E-63 1.1E-67 453.2 26.3 236 21-260 1-254 (318)
11 PTZ00313 inosine-adenosine-gua 100.0 6.5E-63 1.4E-67 453.8 26.7 241 19-260 2-262 (326)
12 cd02648 nuc_hydro_1 NH_1: A su 100.0 5.1E-62 1.1E-66 448.8 27.2 241 19-260 1-301 (367)
13 cd00455 nuc_hydro nuc_hydro: N 100.0 1.7E-61 3.7E-66 439.1 26.8 236 22-260 1-236 (295)
14 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 1.2E-61 2.6E-66 442.7 25.9 235 20-260 1-251 (312)
15 PF01156 IU_nuc_hydro: Inosine 100.0 1.6E-62 3.4E-67 448.3 12.5 239 19-260 1-243 (312)
16 KOG2938 Predicted inosine-urid 100.0 3.4E-49 7.3E-54 361.5 22.4 242 17-259 19-264 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 100.0 1E-43 2.3E-48 321.0 18.4 187 22-219 1-206 (293)
18 PF07632 DUF1593: Protein of u 98.3 1.3E-06 2.7E-11 77.8 5.3 139 21-170 1-158 (260)
19 PF10609 ParA: ParA/MinD ATPas 80.5 2.2 4.9E-05 31.5 3.3 54 21-81 3-57 (81)
20 PF14097 SpoVAE: Stage V sporu 71.7 4.3 9.4E-05 34.2 3.2 27 33-59 71-97 (180)
21 PF00455 DeoRC: DeoR C termina 64.3 32 0.0007 28.2 7.0 71 123-209 31-101 (161)
22 PRK09802 DNA-binding transcrip 61.1 39 0.00085 30.3 7.5 71 123-209 118-188 (269)
23 KOG2938 Predicted inosine-urid 59.5 2.4 5.3E-05 39.7 -0.6 96 119-217 191-301 (350)
24 PRK13509 transcriptional repre 54.7 61 0.0013 28.6 7.5 69 123-209 105-173 (251)
25 PF01168 Ala_racemase_N: Alani 54.5 61 0.0013 27.4 7.3 42 17-58 108-157 (218)
26 COG2185 Sbm Methylmalonyl-CoA 48.9 43 0.00093 27.4 5.1 55 30-89 52-106 (143)
27 COG1927 Mtd Coenzyme F420-depe 47.4 76 0.0016 27.9 6.6 73 122-207 18-94 (277)
28 PRK10681 DNA-binding transcrip 43.5 1.1E+02 0.0025 26.9 7.5 70 124-209 105-174 (252)
29 cd02065 B12-binding_like B12 b 43.5 84 0.0018 23.7 6.0 63 22-90 31-93 (125)
30 TIGR01849 PHB_depoly_PhaZ poly 42.8 1.1E+02 0.0023 29.5 7.5 58 120-177 153-213 (406)
31 PF03054 tRNA_Me_trans: tRNA m 41.3 86 0.0019 29.5 6.6 58 20-81 1-66 (356)
32 TIGR00044 pyridoxal phosphate 40.5 1.5E+02 0.0032 25.8 7.6 41 18-58 119-169 (229)
33 COG0482 TrmU Predicted tRNA(5- 39.8 1.5E+02 0.0032 28.1 7.8 56 18-74 2-63 (356)
34 CHL00181 cbbX CbbX; Provisiona 39.3 56 0.0012 29.6 4.9 49 119-167 144-192 (287)
35 PRK10411 DNA-binding transcrip 37.5 1.5E+02 0.0033 26.0 7.3 70 123-209 105-174 (240)
36 cd02072 Glm_B12_BD B12 binding 36.5 61 0.0013 25.9 4.2 45 42-88 48-92 (128)
37 COG1206 Gid NAD(FAD)-utilizing 36.3 8.9 0.00019 36.1 -0.8 33 126-166 119-152 (439)
38 PF09078 CheY-binding: CheY bi 33.6 35 0.00076 24.1 2.0 20 19-38 35-54 (65)
39 PRK02628 nadE NAD synthetase; 33.6 1.2E+02 0.0025 31.1 6.6 61 19-80 361-429 (679)
40 COG2248 Predicted hydrolase (m 33.5 89 0.0019 28.4 5.0 25 117-146 188-212 (304)
41 COG0489 Mrp ATPases involved i 32.6 1.2E+02 0.0026 27.1 5.9 51 20-74 168-218 (265)
42 cd06820 PLPDE_III_LS_D-TA_like 32.4 2.2E+02 0.0047 26.1 7.8 41 18-58 120-169 (353)
43 TIGR00640 acid_CoA_mut_C methy 32.0 2E+02 0.0043 22.9 6.5 44 42-87 51-94 (132)
44 KOG3022 Predicted ATPase, nucl 31.0 65 0.0014 29.5 3.8 57 19-81 157-214 (300)
45 COG1349 GlpR Transcriptional r 29.9 2.7E+02 0.0058 24.6 7.6 74 120-209 100-173 (253)
46 TIGR02881 spore_V_K stage V sp 28.2 1E+02 0.0022 27.1 4.6 46 120-165 127-172 (261)
47 PRK02261 methylaspartate mutas 27.7 98 0.0021 24.8 4.0 54 30-88 43-96 (137)
48 cd06814 PLPDE_III_DSD_D-TA_lik 27.1 3E+02 0.0065 25.9 7.8 39 18-56 132-179 (379)
49 PRK10434 srlR DNA-bindng trans 26.2 3.4E+02 0.0073 23.9 7.6 69 126-209 106-174 (256)
50 cd04861 LigD_Pol_like LigD_Pol 25.6 77 0.0017 28.0 3.2 25 6-30 85-109 (227)
51 cd00553 NAD_synthase NAD+ synt 25.1 2.6E+02 0.0056 24.4 6.6 56 19-75 23-79 (248)
52 cd06822 PLPDE_III_YBL036c_euk 24.1 3.9E+02 0.0084 23.4 7.5 42 17-58 115-167 (227)
53 cd06819 PLPDE_III_LS_D-TA Type 23.4 5.2E+02 0.011 23.6 8.6 39 18-56 124-171 (358)
54 PRK13057 putative lipid kinase 23.2 3.9E+02 0.0084 23.7 7.5 19 182-200 90-108 (287)
55 cd06824 PLPDE_III_Yggs_like Py 23.1 4.8E+02 0.01 22.3 8.0 40 19-58 118-167 (224)
56 cd01993 Alpha_ANH_like_II This 23.1 3E+02 0.0066 22.1 6.4 54 21-75 1-61 (185)
57 cd04865 LigD_Pol_like_2 LigD_P 23.0 91 0.002 27.6 3.2 25 6-30 86-110 (228)
58 cd07376 PLPDE_III_DSD_D-TA_lik 22.8 4.7E+02 0.01 23.8 8.1 40 18-57 110-159 (345)
59 TIGR02778 ligD_pol DNA polymer 22.5 96 0.0021 27.7 3.3 35 6-40 101-139 (245)
60 PF12953 DUF3842: Domain of un 22.4 4.2E+02 0.0091 21.4 9.6 94 125-240 15-128 (131)
61 cd00635 PLPDE_III_YBL036c_like 22.1 4.5E+02 0.0098 22.3 7.5 41 18-58 115-165 (222)
62 COG2047 Uncharacterized protei 22.1 90 0.0019 27.7 2.9 28 160-199 180-207 (258)
63 PF02310 B12-binding: B12 bind 21.7 3E+02 0.0064 20.5 5.7 59 22-86 32-90 (121)
64 TIGR02880 cbbX_cfxQ probable R 21.6 2.2E+02 0.0047 25.6 5.5 48 120-167 144-191 (284)
65 cd01712 ThiI ThiI is required 21.5 2.4E+02 0.0052 23.0 5.4 47 27-74 7-56 (177)
66 cd02067 B12-binding B12 bindin 20.8 2.3E+02 0.005 21.4 4.9 61 23-88 32-92 (119)
67 cd04866 LigD_Pol_like_3 LigD_P 20.6 1E+02 0.0022 27.2 3.0 34 6-40 81-118 (223)
68 PRK10696 tRNA 2-thiocytidine b 20.6 4E+02 0.0087 23.4 7.0 53 19-74 29-87 (258)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.5e-72 Score=504.60 Aligned_cols=242 Identities=42% Similarity=0.696 Sum_probs=233.5
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccc
Q 024918 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (260)
Q Consensus 18 ~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~ 97 (260)
+++|||||||+|+||++||++|+++|++||+|||+++||++.+++++|++.+|+.+|+.+||||+|+.+||.++. .+++
T Consensus 1 ~~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-~~a~ 79 (311)
T COG1957 1 MMRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREP-ITAP 79 (311)
T ss_pred CCceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCC-cchh
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999875 5678
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCC
Q 024918 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (260)
Q Consensus 98 ~~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn 177 (260)
++||++|+++..+|+|...+...+|+++|+|+++++|++|||+++|||||||+||+++|++.++||+||||||++..+||
T Consensus 80 ~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~GN 159 (311)
T COG1957 80 EIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGN 159 (311)
T ss_pred hhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCCCCC
Confidence 99999999999888887777779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccC
Q 024918 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (260)
Q Consensus 178 ~~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (260)
++|.||||+|+|||||++||+||+|++|+|||+|+|+..+++.++++++.+++.++++.+++++|.++++..+|++|+++
T Consensus 160 vtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g~~~ 239 (311)
T COG1957 160 VTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDGAPL 239 (311)
T ss_pred cCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 024918 258 FKS 260 (260)
Q Consensus 258 ~d~ 260 (260)
||+
T Consensus 240 hD~ 242 (311)
T COG1957 240 HDP 242 (311)
T ss_pred ccH
Confidence 995
No 2
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=2e-69 Score=494.23 Aligned_cols=240 Identities=31% Similarity=0.598 Sum_probs=227.7
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccc
Q 024918 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (260)
Q Consensus 18 ~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~ 97 (260)
.++|||||||+|+||++||+|||.+|++||+|||||+||++.+++++|++++|+.+|+ +||||+|+.+||.++. ..+.
T Consensus 2 ~~~kvIiDtD~G~DDa~Al~~al~~p~~ev~gIttv~GN~~~~~~~~Nal~~l~~~g~-~IPV~~Ga~~PL~~~~-~~~~ 79 (313)
T PRK09955 2 EKRKIILDCDPGHDDAIAMMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPVYAGMPQPIMRQQ-IVAD 79 (313)
T ss_pred CCceEEEECCCChHHHHHHHHHhcCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCC-CCCEEeCCCCCCCCCC-CCcc
Confidence 3579999999999999999999999999999999999999999999999999999997 8999999999998864 4567
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCC
Q 024918 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (260)
Q Consensus 98 ~~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn 177 (260)
.+||++|||+..+|++...+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++. .||
T Consensus 80 ~~HG~~Glg~~~~~~~~~~~~~~~A~~~i~~~~~~~p~eitiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~GN 158 (313)
T PRK09955 80 NIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYG-TGN 158 (313)
T ss_pred ccCCCCCCCCCCCCCcccccCCCcHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChHHHHhCCEEEEeCCCCC-CCC
Confidence 8999999999888877666667899999999999999999999999999999999999999999999999999984 799
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccC
Q 024918 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (260)
Q Consensus 178 ~~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (260)
++|.+|||||+|||||++||+|++|++++|||+|+++.++++++++|.+.+++.++++.+++++|.+++.+.+|.+||++
T Consensus 159 ~tp~aEfN~~~DPeAA~iV~~s~~~i~~v~lDvT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l 238 (313)
T PRK09955 159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 238 (313)
T ss_pred CCCCeeeccccCHHHHHHHHhCCCCEEEeccccccceecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999988899999999999999999998999999999
Q ss_pred CCC
Q 024918 258 FKS 260 (260)
Q Consensus 258 ~d~ 260 (260)
||+
T Consensus 239 hD~ 241 (313)
T PRK09955 239 HDA 241 (313)
T ss_pred ChH
Confidence 995
No 3
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=4.2e-69 Score=493.04 Aligned_cols=241 Identities=73% Similarity=1.147 Sum_probs=229.6
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCC-CCcccc
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGK-PRVAEF 98 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~-~~~~~~ 98 (260)
+|||||||+|+||++||+|||.+|+++|+|||+|+||++.+++++|++++|+++|+.+||||+|+..||.... .+.+++
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~~~~~~~ 80 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPVAEGSHEPLKGGTKPRIADF 80 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHcCCCCCCEEeCCCCCCCCCCCCcCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999852 356678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCC
Q 024918 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~ 178 (260)
+||++|||+..+|++...+...+|+++|+++++++|++||||++|||||||+|++++|++.+|||+||+|||++..+||+
T Consensus 81 ~hG~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~ 160 (316)
T PLN02717 81 VHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNV 160 (316)
T ss_pred CCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChHHHhhcCEEEEeCCCcCCCCCC
Confidence 99999999998887766667789999999999999999999999999999999999999999999999999999888999
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 024918 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (260)
Q Consensus 179 ~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (260)
+|.+|||||+|||||++||+|++|++++|||+|+++.++.+++++|.+.+++.++|+.+++++|.+++.+.+|.+|+++|
T Consensus 161 tp~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T PLN02717 161 NPAAEANIFGDPEAADIVFTSGADITVVGINVTTQVVLTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDGIYLH 240 (316)
T ss_pred CchhhhhhhcCHHHHHHHHhCCCCeEEEcccccCceecCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhcCCCcccCC
Confidence 99999999999999999999999999999999999999999999999888999999999999999999998999999999
Q ss_pred CC
Q 024918 259 KS 260 (260)
Q Consensus 259 d~ 260 (260)
|+
T Consensus 241 D~ 242 (316)
T PLN02717 241 DP 242 (316)
T ss_pred cH
Confidence 95
No 4
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.7e-66 Score=473.67 Aligned_cols=240 Identities=52% Similarity=0.871 Sum_probs=228.5
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccccc
Q 024918 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (260)
Q Consensus 21 ~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~h 100 (260)
|||||||+|+||++||+|||.+|+++|+|||+++||++.+++++|++++|+.+|+.+|||++|+.+|+.....+.+.++|
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~p~~~v~gIt~~~Gn~~~~~~~~na~~~l~~~g~~diPV~~G~~~pl~~~~~~~~~~~h 80 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAHPDVDLIGVTTVYGNVTIETATRNALALLELFGRPDVPVAEGAAKPLTRPPFRIATFVH 80 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEcCCCCCCCCCCcCCcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999876533677899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCC
Q 024918 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (260)
Q Consensus 101 g~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~ 180 (260)
|.+||++..+|.+...+...+|+++|+++++++|++||||++|||||||+|++++|++.+|||+||+|||++...||++|
T Consensus 81 g~dGlg~~~~p~~~~~~~~~~A~~~l~~~~~~~~~~vtivaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~~~~GN~~p 160 (304)
T cd02650 81 GDNGLGDVELPAPPRQPEDESAADFLIELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAFTVPGNVTP 160 (304)
T ss_pred CCCCCCCCCCCCCCCCcCccCHHHHHHHHHHhCCCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEEeCccccCCCCCCc
Confidence 99999999888776666678999999999999999999999999999999999999999999999999999988899999
Q ss_pred CCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCCCC
Q 024918 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKS 260 (260)
Q Consensus 181 ~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~ 260 (260)
.+||||++||+||++||+|++|++++|||+|+++.++++++++|.+.+++.++|+.+++++|.+++.+.++..|+++||+
T Consensus 161 ~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~D~ 240 (304)
T cd02650 161 AAEANIHGDPEAADIVFTAGADLTMVGLDVTTQTLLTREDLDELRDSGGKAGQFLADMLDYYIDFYQESPGLRGCALHDP 240 (304)
T ss_pred hHHhhcccCHHHHHHHHhCCCCeEEeCCceeeeEecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCcccCCcH
Confidence 99999999999999999999999999999999999999999999988899999999999999999988889999999995
No 5
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=1.9e-66 Score=472.88 Aligned_cols=237 Identities=37% Similarity=0.602 Sum_probs=223.7
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccccc
Q 024918 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (260)
Q Consensus 21 ~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~h 100 (260)
|||||||+|+||++||+||+.+|++||+|||+++||++.+++++|++++|+.+|+++||||+|+..|+.++. ..++.+|
T Consensus 1 kvIiDtD~g~DDa~Al~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~-~~~~~~h 79 (302)
T cd02651 1 PIIIDCDPGHDDAVAILLALFHPELDLLGITTVAGNVPLEKTTRNALKLLTLLGRTDVPVAAGAARPLVRPL-ITASDIH 79 (302)
T ss_pred CeEEECCCCHHHHHHHHHHhcCCCceEEEEEeccCeecHHHHHHHHHHHHHHhCCCCCcEEcCCCcCcCCCC-CCCcCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999998864 3566789
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCC
Q 024918 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (260)
Q Consensus 101 g~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~ 180 (260)
|++||++..+|++...+..++|+++|+++++++|++|+||++|||||||+|++++|++.+|||+||+|||++ ..||++|
T Consensus 80 G~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~-~~GN~tp 158 (302)
T cd02651 80 GESGLDGADLPPPPRRPEDIHAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLMGGAL-GRGNITP 158 (302)
T ss_pred CCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEEecCCc-CCCCCCh
Confidence 999999998887666556788999999999999999999999999999999999999999999999999998 6899999
Q ss_pred CCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCCCC
Q 024918 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKS 260 (260)
Q Consensus 181 ~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~ 260 (260)
.+|||||+||+||++||+|++|++++|||+|+++.++++++++|.+.+++.++|+.+++++|.+++.+.+ .+|+++||+
T Consensus 159 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~ 237 (302)
T cd02651 159 AAEFNIFVDPEAAKIVFNSGIPITMVPLDVTHKALATPEVIERIRALGNPVGKMLAELLDFFAETYGSAF-TEGPPLHDP 237 (302)
T ss_pred HHHhhcccCHHHHHHHHhCCCCeEEeccceeeeeccCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhc-cCCCCCCcH
Confidence 9999999999999999999999999999999999999999999998889999999999999998877766 789999995
No 6
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=4.2e-66 Score=472.32 Aligned_cols=240 Identities=33% Similarity=0.566 Sum_probs=226.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (260)
++|||||||+|+||++||+|||.+|++||+|||+++||++.+++++|++++|+++|+.+||||+|+..|+.... ..++.
T Consensus 2 ~~~vIiDtD~g~DDa~AL~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 80 (311)
T PRK10443 2 ALPIILDCDPGHDDAIALVLALASPELDVKAVTTSAGNQTPEKTLRNALRMLTLLNRTDIPVAGGAVKPLMREL-IIADN 80 (311)
T ss_pred CCcEEEECCCChHHHHHHHHHhcCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCCCC-cCccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999998753 35667
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCC
Q 024918 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~ 178 (260)
.||++|+++..+|.+...+.+++|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++. .||+
T Consensus 81 ~hG~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~Gn~ 159 (311)
T PRK10443 81 VHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARIVIMGGAMG-LGNW 159 (311)
T ss_pred cCCCCCCCCCCCCCCccCCCCccHHHHHHHHHHhCCCCeEEEEccchHHHHHHHHHCchhhhhhCEEEEccCCCC-CCCC
Confidence 899999999888777666667899999999999999999999999999999999999999999999999999986 5999
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhh-ccCCCcccC
Q 024918 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVK-SDGVHGNFS 257 (260)
Q Consensus 179 ~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~ 257 (260)
+|.+|||||+||+||++||+|++|++++|||+|+++.++++++++|.+.+++.++|+.+++++|..++++ .+|+.|+++
T Consensus 160 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~l 239 (311)
T PRK10443 160 TPAAEFNIYVDPEAAEIVFQSGIPIVMAGLDVTHKAQIMDEDIERIRAIGNPVATIVAELLDFFMEYHKDEKWGFVGAPL 239 (311)
T ss_pred CcchhhccCcCHHHHHHHHhCCCCEEEecccccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHhHhhhCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999988899999999999999988875 679999999
Q ss_pred CCC
Q 024918 258 FKS 260 (260)
Q Consensus 258 ~d~ 260 (260)
||+
T Consensus 240 hD~ 242 (311)
T PRK10443 240 HDP 242 (311)
T ss_pred CCH
Confidence 995
No 7
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.3e-66 Score=475.58 Aligned_cols=238 Identities=35% Similarity=0.571 Sum_probs=225.0
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccccc
Q 024918 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (260)
Q Consensus 21 ~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~h 100 (260)
|||||||+|+||++||+|||.+|++||+|||+++||++.+++++|++++|+.+|+.+||||+|+..||.++. ..+..+|
T Consensus 1 kvIiDtD~GiDDa~AL~~al~~p~iel~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~~~~~h 79 (320)
T cd02653 1 KVIIDCDPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLELLGRTDIPVYLGADKPLAGPL-TTAQDTH 79 (320)
T ss_pred CEEEECCCChHHHHHHHHHhhCCCCeEEEEEEcCCccCHHHHHHHHHHHHHHcCCCCCcEEeCCCccCCCCC-CCccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999998864 4567899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCC
Q 024918 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (260)
Q Consensus 101 g~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~ 180 (260)
|++|||+..+|++...+..++|+++|+++++++| +|+||++|||||||+|++++|++.+|||+||+|||++..+||++|
T Consensus 80 G~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~-eitiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~tp 158 (320)
T cd02653 80 GPDGLGYAELPASTRTLSDESAAQAWVDLARAHP-DLIGLATGPLTNLALALREEPELPRLLRRLVIMGGAFNSRGNTSP 158 (320)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-CeEEEECCchHHHHHHHHHChHHHHhcCEEEEECCCcCCCCCCCc
Confidence 9999999888876666667899999999999999 999999999999999999999999999999999999988899999
Q ss_pred CCCCCCCCCHHHHHHHHhc----CCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCccc
Q 024918 181 AAEANIYGDPEAADVVFTS----GANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNF 256 (260)
Q Consensus 181 ~aE~N~~~DP~AA~~Vl~s----g~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 256 (260)
.+|||||+|||||++||+| ++|++++|||+|+++.+++++++++.+..++.++|+.+++++|.+++++..+..|++
T Consensus 159 ~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (320)
T cd02653 159 VAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLLERLARAKDSVGAFIEDALRFYFEFHWAYGHGYGAV 238 (320)
T ss_pred HhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999998 699999999999999999999999999889999999999999999988776677999
Q ss_pred CCCC
Q 024918 257 SFKS 260 (260)
Q Consensus 257 ~~d~ 260 (260)
+||+
T Consensus 239 lhD~ 242 (320)
T cd02653 239 IHDP 242 (320)
T ss_pred CChH
Confidence 9995
No 8
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=5.3e-66 Score=470.51 Aligned_cols=239 Identities=36% Similarity=0.549 Sum_probs=225.5
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccc
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 99 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~ 99 (260)
+|||||||+|+||++||++|+.+|++||+|||+++||++.+++++|++++|+.+|+.+|||++|+.+||.++.. .+..+
T Consensus 1 ~kviiDtD~g~DD~~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~~-~~~~~ 79 (306)
T cd02649 1 RKLIIDTDCGGDDAWALLMALASPNVEVLAITCVHGNTNVEQVVKNALRVLEACGRRDIPVYRGASKPLLGPGP-TAAYF 79 (306)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEecCCCccCCCCCC-Ccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998753 55678
Q ss_pred cCCCCCCCCCCCCCC--CCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCC
Q 024918 100 HGSDGMGNISLTPPK--AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (260)
Q Consensus 100 hg~~Gl~~~~~~~~~--~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn 177 (260)
||++||++..+|++. ..+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++...||
T Consensus 80 hG~~Glg~~~~p~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~~~~GN 159 (306)
T cd02649 80 HGKDGFGDVGFPEPKDELELQKEHAVDAIIRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNREGVGN 159 (306)
T ss_pred CCCCCCCCCCCCCCcccCCcCCCCHHHHHHHHHHhCCCCeEEEecccHHHHHHHHHHChHHHHhcCeEEEeCCCccCCCC
Confidence 999999998887765 455677899999999999999999999999999999999999999999999999999888899
Q ss_pred CCCCCCCCCCCCHHHHHHHHhc-CCcEEEEcCCccc-eeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcc
Q 024918 178 VNPAAEANIYGDPEAADVVFTS-GANIAVVGINITT-QVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGN 255 (260)
Q Consensus 178 ~~~~aE~N~~~DP~AA~~Vl~s-g~~i~~vpldvt~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 255 (260)
++|.+|||||+||+||++||+| ++|++++|||+|+ ++.+++++++++++. ++.++|+.+++++|.+++++.+|..|+
T Consensus 160 ~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (306)
T cd02649 160 TTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFEDKWANR-LEKALFAESLNRREYAFASEGLGGDGW 238 (306)
T ss_pred CCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999 9999999999999 999999999999874 688999999999999999988899999
Q ss_pred cCCCC
Q 024918 256 FSFKS 260 (260)
Q Consensus 256 ~~~d~ 260 (260)
++||+
T Consensus 239 ~~hD~ 243 (306)
T cd02649 239 VPCDA 243 (306)
T ss_pred CCCcH
Confidence 99995
No 9
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=5.5e-65 Score=463.76 Aligned_cols=234 Identities=37% Similarity=0.528 Sum_probs=217.9
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (260)
++|||||||+|+||++||+||+.+|++||+|||+++||++.+++++|++++|+.+| .+||||+|+.+||.++. ..+..
T Consensus 2 ~~kvIiDtD~g~DDa~Al~~al~~p~~~v~git~v~GN~~~~~~~~na~~~l~~~g-~dIPV~~Ga~~pl~~~~-~~~~~ 79 (304)
T PRK10768 2 RLPIILDTDPGIDDAVAIAAALFAPELDLKLITTVAGNVSVEKTTRNALKLLHFFN-SDVPVAQGAAKPLVRPL-RDAAS 79 (304)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHHHHHhC-CCCeEEeCCccccCCCC-CCccc
Confidence 46899999999999999999999999999999999999999999999999999999 79999999999998764 34567
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCC
Q 024918 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~ 178 (260)
+||++|+++..+|.+...+..++|+++|+++++++|++|+||++|||||||+|++++|++.+|||+||+|||++. .||+
T Consensus 80 ~hG~~Gl~~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itila~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~-~GN~ 158 (304)
T PRK10768 80 VHGESGMEGYDFPEHTRKPLSIPAVEAMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGSAG-RGNV 158 (304)
T ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChhhHhhcCEEEEecCCcC-cCCC
Confidence 899999999988877666667899999999999999999999999999999999999999999999999999984 6999
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 024918 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (260)
Q Consensus 179 ~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (260)
+|.+|||||+|||||++||+|++|++++|||+|+++.++++++++|++. ++.++|+.+++++|.+++. .+|+++|
T Consensus 159 t~~aEfN~~~DPeAA~iVl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~g~~~h 233 (304)
T PRK10768 159 TPNAEFNIAVDPEAAAIVFRSGIPIVMCGLDVTNQALLTPDYLATLPEL-NRTGKMLHALFSHYRSGSM----QTGLRMH 233 (304)
T ss_pred CccchhccCCCHHHHHHHHhCCCCeEEeccccceeeecCHHHHHHHHhc-ChHHHHHHHHHHHHHhhcc----cCCCCcC
Confidence 9999999999999999999999999999999999999999999999874 7899999999999887654 2589999
Q ss_pred CC
Q 024918 259 KS 260 (260)
Q Consensus 259 d~ 260 (260)
|+
T Consensus 234 D~ 235 (304)
T PRK10768 234 DV 235 (304)
T ss_pred cH
Confidence 95
No 10
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=5.3e-63 Score=453.16 Aligned_cols=236 Identities=30% Similarity=0.417 Sum_probs=213.0
Q ss_pred eEEEecCCC----chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCc-
Q 024918 21 KLIIDTDPG----IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV- 95 (260)
Q Consensus 21 ~viiDtD~g----~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~- 95 (260)
|||||||+| +||++||+||+.+|++||+|||+|+||++.+++++|++++|+.+||.+||||+|+.+||.+.....
T Consensus 1 kvIiDtD~G~~~d~DDa~Al~lal~~p~~el~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~ 80 (318)
T cd02654 1 KVILDNDIAMGRDTDDGLALALLLWSPEVELLGLSAVSGNCWLSAVTYNVLRMLELAGADAIPVYAGANTPLGRTNRAFH 80 (318)
T ss_pred CEEEEcCCCCCCCccHHHHHHHHhhCCCceEEEEEEecCCCCHHHHHHHHHHHHHHhCCCCCCEEECCCccccCCccccc
Confidence 699999999 999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred -cccccCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEE
Q 024918 96 -AEFAHGSDGMGNISLTPPK--------AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 166 (260)
Q Consensus 96 -~~~~hg~~Gl~~~~~~~~~--------~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iv 166 (260)
.+..||.+|+++..+|++. ..+..++|+++|+++++++|++||||++|||||||+|++++|++.++||+||
T Consensus 81 ~~~~~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~i~~iv 160 (318)
T cd02654 81 AWESLYGAYLWQGAWSPEYSDMYTNASIIRNASIPAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPDFAPLAKELV 160 (318)
T ss_pred cccccCCCcccCCCCCCCccccccccccCCCCCccHHHHHHHHHHhCCCceEEEECCcHHHHHHHHHHChhHHHhCCEEE
Confidence 1467899999887777654 3444678999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCC-CCC-C-CCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHH
Q 024918 167 VLGGAFFALG-NVN-P-AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYR 243 (260)
Q Consensus 167 iMGG~~~~~G-n~~-~-~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (260)
+|||++...| |.+ + .+|||||+|||||++||+|++|++++|||+|+++.+++++++++ ++.++|+.+++++|.
T Consensus 161 iMGG~~~~~g~~~~~~~~aEfN~~~DPeAA~iVl~s~~~~~~v~ldvT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 236 (318)
T cd02654 161 IMGGYLDDIGEFVNRHYASDFNLIMDPEAASIVLTAPWKSITIPGNVTNRTCLTPEQIKAD----DPLRDFIRETLDLPI 236 (318)
T ss_pred EeCCCccCCCCcCCCCCCcceeeccCHHHHHHHHhCCCCEEEeCcccccceeCCHHHHhcc----CHHHHHHHHHHHHHH
Confidence 9999986555 566 3 89999999999999999999999999999999999999988755 567999999999999
Q ss_pred HHHhhccCC-CcccCCCC
Q 024918 244 DWHVKSDGV-HGNFSFKS 260 (260)
Q Consensus 244 ~~~~~~~~~-~g~~~~d~ 260 (260)
+++.+.++. .|+++||+
T Consensus 237 ~~~~~~~~~~~g~~~hD~ 254 (318)
T cd02654 237 DYAKEFVGTGDGLPMWDE 254 (318)
T ss_pred HHHHHhcCCCCCCCCchH
Confidence 999887764 89999995
No 11
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=6.5e-63 Score=453.84 Aligned_cols=241 Identities=25% Similarity=0.361 Sum_probs=208.7
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEEecCCCChHHHHHHHHHHHHHhCCC-CCCcccCCCCCCCCCCCCcc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP-GVPVAEGSPEPLKGGKPRVA 96 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~-v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~-~IPV~~Ga~~pl~~~~~~~~ 96 (260)
++|||||||+|+||++||+|||++|+ +||+|||||+||+..+++++|++++|+++||. +|||+.|+..|+.+.....+
T Consensus 2 ~~~vIiD~D~GiDDa~Al~~al~~~~~~~v~gIT~v~GNv~~~~~~~Na~~vl~~~g~~~dvPv~~ga~~~~~~~~~~~~ 81 (326)
T PTZ00313 2 PKPVILDHDGNHDDLVALALLLGNPEKVKVIGCICTDADCFVDDAFNVTGKLMCMMHAREATPLFPIGKSSFKGVNPFPS 81 (326)
T ss_pred CCCEEEeCCCCHHHHHHHHHHhcCCcCcEEEEEEEecCCccHHHHHHHHHHHHHHhCCCCCCCeeeecCCcccCCCCCcc
Confidence 36999999999999999999999997 99999999999999999999999999999997 89999999999876322223
Q ss_pred ccc---cCCCCCCCCCCCCCCC-----CCCC--ccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCc-chhhccCeE
Q 024918 97 EFA---HGSDGMGNISLTPPKA-----KKCD--KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDS-SFASKVKNI 165 (260)
Q Consensus 97 ~~~---hg~~Gl~~~~~~~~~~-----~~~~--~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P-~l~~ki~~i 165 (260)
.+. ||.+|||+..+|.+.. .+.. .+|+++|+++++++|++||||++|||||||+||+++| ++.+|||+|
T Consensus 82 ~~~~g~~G~~glg~~~~p~~~~~~~~~~~~~~~~~a~~~i~~~i~~~p~eItiva~GPLTNlAlal~~~pp~~~~~ik~i 161 (326)
T PTZ00313 82 EWRWSAKNMDDLPCLNIPEHVAIWEKLKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEEFTKKVEEC 161 (326)
T ss_pred hheecccCCCCCCCCCCCCccccccccCCccccchHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHhCCHHHHHhcCEE
Confidence 333 7778888887776542 2222 3589999999999999999999999999999999996 999999999
Q ss_pred EEecCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHhcC-CcEEEEcCCccceeecCHHHHHHHHhcCC-hHHHHHHHH
Q 024918 166 VVLGGAFFALGNV-----NPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQSKG-RYVQLLGDM 238 (260)
Q Consensus 166 viMGG~~~~~Gn~-----~~~aE~N~~~DP~AA~~Vl~sg-~~i~~vpldvt~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 238 (260)
|+|||++..+||+ +|.+|||||+|||||++||+|+ +|++++|||+|+++.++++++++|.+.++ +.++|+.++
T Consensus 162 viMGG~~~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~~~~t~~~~~~l~~~~~~~~~~~~~~~ 241 (326)
T PTZ00313 162 VIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNSVPVTSEVVKKFGAQNKYLLSQFVGST 241 (326)
T ss_pred EEeCCcccCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccceeCCHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999888998 7999999999999999999996 99999999999999999999999988655 579998887
Q ss_pred HHHHHHHHhhccCCCcccCCCC
Q 024918 239 CKFYRDWHVKSDGVHGNFSFKS 260 (260)
Q Consensus 239 ~~~~~~~~~~~~~~~g~~~~d~ 260 (260)
+..+.. ++..++.+|+++||+
T Consensus 242 ~~~~~~-~~~~~~~~g~~~hD~ 262 (326)
T PTZ00313 242 WAMCTH-HELLRPGDGYYAWDV 262 (326)
T ss_pred Hhhhhh-hhhhcCCCCCcCcHH
Confidence 665432 222224489999995
No 12
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=5.1e-62 Score=448.82 Aligned_cols=241 Identities=34% Similarity=0.500 Sum_probs=212.9
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEEecCCCChHHHHHHHHHHHHHhCCC------------------CCC
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP------------------GVP 79 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~-v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~------------------~IP 79 (260)
++|||||||+|+||++||+|||.+|+ ++|+|||+|+||++.+++++|++++|+++|+. +||
T Consensus 1 p~kiIiDtDpG~DDa~AillAl~~p~~~ev~gITtv~GN~~~~~~~~Nal~~l~~~gr~~~~~~~~~~~~~~~~~~~~iP 80 (367)
T cd02648 1 PHPIIIDTDPGVDDVLAILLALSSPEEVDVALISLTFGNTTLDHALRNVLRLFHVLERERAWRATPGVRYRAFSADAEKP 80 (367)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCCcccccccccccccccccCCCCC
Confidence 46999999999999999999999999 99999999999999999999999999999987 699
Q ss_pred -cccCCCCCCCCCCCCccccccCCCCCCCCCC--CCC----C--------CCCCCccHHHHHHHHHHcCCC-ceEEEEec
Q 024918 80 -VAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TPP----K--------AKKCDKNASEFLVDKVSEYPG-EVSILALG 143 (260)
Q Consensus 80 -V~~Ga~~pl~~~~~~~~~~~hg~~Gl~~~~~--~~~----~--------~~~~~~~a~~~l~~~l~~~p~-~vtilaiG 143 (260)
|++|+.+||.+.. ..+.++||++||++..+ |.+ . ..+...+|+++|+++++++|+ +|+||++|
T Consensus 81 ~V~~Ga~~PL~~~~-~~a~~~HG~dGlgg~~~~~p~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~~itivalG 159 (367)
T cd02648 81 IVASGSDQPLEGER-LTASYFHGRDGLSGVHWLHPDFTPVETWIPEIVAPLTPSDKPAYDVILDILREEPDHTVTIAALG 159 (367)
T ss_pred EEEcCCCcccCCCC-cccCccCCCCCCCCccccCCccccccccccccccccCcCCccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 9999999998764 45678999999999764 211 1 223457899999999999985 79999999
Q ss_pred chhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhc----------CCcEEEEcCCccce
Q 024918 144 PLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS----------GANIAVVGINITTQ 213 (260)
Q Consensus 144 pLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~s----------g~~i~~vpldvt~~ 213 (260)
||||||+|++++|++.+|||+||+|||++...||.+|.+|||||+||+||++||++ ++|++|+|||+|++
T Consensus 160 PLTNiA~al~~~P~~~~~Ik~IviMGG~~~~~GN~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDvT~~ 239 (367)
T cd02648 160 PLTNLAAAARKDPETFAKVGEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDITTG 239 (367)
T ss_pred cHHHHHHHHHHChHHHhhhcEEEEeCCcccCCCCCCccchhhcccCHHHHHHHHhccccccccccCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999878999999999999999999999984 56999999999999
Q ss_pred eecCHHHH-----HHHHh--cCChHHHHHHHHHH-----HHHHHHhhccCCCcc---cCCCC
Q 024918 214 VKLTDADF-----LELRQ--SKGRYVQLLGDMCK-----FYRDWHVKSDGVHGN---FSFKS 260 (260)
Q Consensus 214 ~~~~~~~~-----~~l~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~---~~~d~ 260 (260)
+.++.+++ +.+++ .+++.++|+.+++. +|.+++.+.++.+|+ ++||+
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lHD~ 301 (367)
T cd02648 240 HTLPYSSLFATYVTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRSELFEMHDP 301 (367)
T ss_pred eeeCHHHhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcH
Confidence 99999774 44555 67899997555544 889999888877776 99995
No 13
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=1.7e-61 Score=439.09 Aligned_cols=236 Identities=41% Similarity=0.692 Sum_probs=215.9
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccccC
Q 024918 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHG 101 (260)
Q Consensus 22 viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~hg 101 (260)
||||||+|+||++||+|++.+|+++|+|||+++||++.+++++|++++|+.+|+.+|||++|+..|+..+........||
T Consensus 1 vIiDtD~g~DDa~Al~~~l~~~~~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~iPV~~G~~~pl~~~~~~~~~~~~g 80 (295)
T cd00455 1 VILDTDPGIDDAFALMYALLHPEIELVGIVATYGNVTLEQATQNAAYLLELLGRLDIPVYAGATRPLTGEIPAAYPEIHG 80 (295)
T ss_pred CEEeCCCCHHHHHHHHHHhcCCCceEEEEEeccCCccHHHHHHHHHHHHHHhCCCCCCEeCCCCCCCCCCCCCCCcccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999998764333445688
Q ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCC
Q 024918 102 SDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPA 181 (260)
Q Consensus 102 ~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~ 181 (260)
.+|.+ . .+.+......++|+++|+|+++++|++|+||++|||||||+|++++|++.+|||+||+|||++..+||++|.
T Consensus 81 ~~g~~-~-~~~~~~~~~~~~a~~~i~~~~~~~~~~v~ila~GplTNlA~al~~~p~~~~~i~~iviMGG~~~~~Gn~~~~ 158 (295)
T cd00455 81 EGGLG-L-PIPPIIEADDPEAVQLLIDLIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLVPGNVTPV 158 (295)
T ss_pred CCCCC-C-CCCCCCcCCCcCHHHHHHHHHHhcCCCeEEEECCchHHHHHHHHHChHHHHhCCEEEEcCCccCCCCCCCcc
Confidence 87733 2 222333345678999999999999999999999999999999999999999999999999999778999999
Q ss_pred CCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCCCC
Q 024918 182 AEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKS 260 (260)
Q Consensus 182 aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~ 260 (260)
+||||++||+||++||+|++|++++|||+|+++.+++++++++.+..++.++|+.+++++|..++++ ++..|+++||+
T Consensus 159 aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~ 236 (295)
T cd00455 159 AEANFYGDPEAANIVFNSAKNLTIVPLDVTNQAVLTPPMVERIFEQGTSIGLLIKPMIDYYYKAYQK-PGIEGSPIHDP 236 (295)
T ss_pred chhhcccCHHHHHHHHhCCCCeEEecccceeeEeCCHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-CCCCcCCCChH
Confidence 9999999999999999999999999999999999999999999988889999999999999998888 88899999994
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=1.2e-61 Score=442.74 Aligned_cols=235 Identities=24% Similarity=0.358 Sum_probs=207.5
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEe--cCCCChHHHHHHHHHHHHHhCC-CCCCcccCCCCCCCCCCCCcc
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTI--FGNVTTEDATRNALTLCEMAGC-PGVPVAEGSPEPLKGGKPRVA 96 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv--~Gn~~~~~~~~na~~ll~~~g~-~~IPV~~Ga~~pl~~~~~~~~ 96 (260)
+|||||||+|+||++||+|||++|++||+|||++ +||++.+++++|++++|+.+|| .+||||+|+..||... ...
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p~i~l~gIt~v~~~GN~~~~~~~~na~~ll~~~g~~~dIPV~~Ga~~pL~~~--~~~ 78 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNEKVDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQRDAIPVGKGGSRAVNPF--PRS 78 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCCCcceEEEEEecCcCCccHHHHHHHHHHHHHHhCCCCCCCEEeCCCcCcccC--ccc
Confidence 5899999999999999999999999999999999 9999999999999999999999 8999999999999431 112
Q ss_pred ccccCCCCCCCCCC----CCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCC
Q 024918 97 EFAHGSDGMGNISL----TPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAF 172 (260)
Q Consensus 97 ~~~hg~~Gl~~~~~----~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~ 172 (260)
...|+.+|++.... |.+.......+|+++|+|+++++|++||||++|||||||+|++++|++.+|||+||+|||++
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 158 (312)
T cd02647 79 WRRDAAFSVDHLPILNERYTVETPLAEETAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGV 158 (312)
T ss_pred cccccccCcCcCCCCccccCCCCCcCcchHHHHHHHHHHhCCCCEEEEEcccHHHHHHHHHHChHHHhhcCEEEEeCCcc
Confidence 23455555543211 11122234578999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHH----HHHHHHhcCChHHHHHHHHHHHHH
Q 024918 173 FALGNV-----NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDA----DFLELRQSKGRYVQLLGDMCKFYR 243 (260)
Q Consensus 173 ~~~Gn~-----~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~ 243 (260)
..+||+ +|.+|||||+||+||++||+|++|++++|||+|+++.++++ +++++.+.+++.++|+.+++++|.
T Consensus 159 ~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vpldvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (312)
T cd02647 159 DAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLDATNTVPLTREFLETDRQRFAAQRLPASDLAGQGYALVK 238 (312)
T ss_pred CCCCccccCCCCCCcccccccCHHHHHHHHhCCCCEEEEccccccccccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 888998 99999999999999999999999999999999999999999 566777777899999999999998
Q ss_pred HHHhhccCCCcccCCCC
Q 024918 244 DWHVKSDGVHGNFSFKS 260 (260)
Q Consensus 244 ~~~~~~~~~~g~~~~d~ 260 (260)
+++ |..|+++||+
T Consensus 239 ~~~----~~~g~~~hD~ 251 (312)
T cd02647 239 PLE----FNSTYYMWDV 251 (312)
T ss_pred hhc----CCCCccccHH
Confidence 886 7889999995
No 15
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=1.6e-62 Score=448.26 Aligned_cols=239 Identities=46% Similarity=0.753 Sum_probs=204.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC-CCCCCcccCCCCCCCCCCCCccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG-CPGVPVAEGSPEPLKGGKPRVAE 97 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g-~~~IPV~~Ga~~pl~~~~~~~~~ 97 (260)
++|||||||+|+||++||++||.+|++||+|||+++||++.+++++|++++|+.+| +.+|||+.|+..|+..+. ....
T Consensus 1 ~~~viiDtD~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~G~~~pl~~~~-~~~~ 79 (312)
T PF01156_consen 1 MKKVIIDTDPGIDDALALALALASPEIEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYKGADRPLVRPP-EYAP 79 (312)
T ss_dssp -EEEEEEE--SHHHHHHHHHHHHHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEEEESS-SSSSH-HHHH
T ss_pred CcEEEEECCCChhHHHHHHHHHhCCCcEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceeecchhhhhccc-cchh
Confidence 57999999999999999999999999999999999999999999999999999996 778999999999998642 4567
Q ss_pred cccCCCCCCCCCCCCCCCC--CCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCC
Q 024918 98 FAHGSDGMGNISLTPPKAK--KCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (260)
Q Consensus 98 ~~hg~~Gl~~~~~~~~~~~--~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~ 175 (260)
++||.+||++..+|++... ....+|+++|+++++++|++|+||++|||||||+||+++|++.+||++||+|||++...
T Consensus 80 ~~~g~~gl~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GplTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 159 (312)
T PF01156_consen 80 EIHGEDGLGDASLPEPEDEPYPSDEDAVDFIIELLKAYPGEVTIVAIGPLTNLALALRRDPEIAKKIKRIVIMGGAFDGP 159 (312)
T ss_dssp HHHTTTSSTSS-HHSSSCHCHBHSSBHHHHHHHHHHHSSSTEEEEECS-SHHHHHHHHHHGGHHGGEEEEEEE---SSS-
T ss_pred hcccccCCCcccCcccccccccccccHHHHHHHHHHhcCCcEEEEecCcchhHHHHHHhChHHHhhceEEEEECCccccC
Confidence 8899999999766654443 35688999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhhccCCCc
Q 024918 176 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQ-SKGRYVQLLGDMCKFYRDWHVKSDGVHG 254 (260)
Q Consensus 176 Gn~~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (260)
||.+|.+||||++||+||++||+|++|++++|+|+|+++.+++++++++.+ .++++++|+.+++++|.+++++. ..|
T Consensus 160 Gn~~~~aE~N~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 237 (312)
T PF01156_consen 160 GNVTPVAEFNFYCDPEAAQIVLESGIPITLVPLDVTHQVLLTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRDG--SDG 237 (312)
T ss_dssp -SSSSSC-HHHHHSHHHHHHHHCSSS-EEEE-HHHHTTSEEEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHHH--SSS
T ss_pred CCCCccCCcCcccCHHHHHHHhhcCCCeEEEecCccccccCCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhhc--cCC
Confidence 999999999999999999999999999999999999999999999999998 67899999999999999888744 789
Q ss_pred ccCCCC
Q 024918 255 NFSFKS 260 (260)
Q Consensus 255 ~~~~d~ 260 (260)
+++||+
T Consensus 238 ~~~~D~ 243 (312)
T PF01156_consen 238 FPLHDP 243 (312)
T ss_dssp EE-HHH
T ss_pred cccCCH
Confidence 999984
No 16
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.4e-49 Score=361.48 Aligned_cols=242 Identities=41% Similarity=0.589 Sum_probs=207.7
Q ss_pred CCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcc
Q 024918 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVA 96 (260)
Q Consensus 17 ~~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~ 96 (260)
-.+.++|||||+|.||++||++++.+|+++++|||||+||+..+++++||+++|+.+||.+|||+.|+.+|+......++
T Consensus 19 ~~~~~iiid~D~~~Dd~~al~la~~~~~~~ilglTtv~Gn~~~~~t~~NA~~~L~l~~r~dIPV~~Ga~kpl~~~~~~~a 98 (350)
T KOG2938|consen 19 SYKRKIIIDCDPGSDDAFALLLALLGPELEILGLTTVHGNVTVEDTDRNALDLLSLLGRLDIPVYEGAAKPLIRSPNDWA 98 (350)
T ss_pred ccceeEEEeCCCCcccHHHHHHHhcCccceeEeeeEeeCCccHhhhhhhHHHHHHhcCCcCCCchhcccccccCCccchh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999998765688
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCC
Q 024918 97 EFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALG 176 (260)
Q Consensus 97 ~~~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~G 176 (260)
.++||.||+++..+|.|......+.+.+++++...++|++||++++|||||+|++++.+|++.+++|++++|||+++..|
T Consensus 99 ~~~hG~dGl~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~It~va~GPLTNlAla~~~~pd~~~~v~~ivimGG~~~~~g 178 (350)
T KOG2938|consen 99 NAFHGIDGLGDILLPPPRDDINVGHGAEFAIEQDIAYPGEITIVAYGPLTNLALALALDPDFLKNVKRIVIMGGNYYGNG 178 (350)
T ss_pred hhhccccccCCcccCCccccccccccHHHHHHHhhcCCCCceEEEeccchHHHHHhhcChhHhhccccEEEecccccccc
Confidence 89999999999888776666667888888888888999999999999999999999999999999999999999998889
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcC-CcEEEEcCCccceeecCHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhhccCC
Q 024918 177 NVNPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQ---SKGRYVQLLGDMCKFYRDWHVKSDGV 252 (260)
Q Consensus 177 n~~~~aE~N~~~DP~AA~~Vl~sg-~~i~~vpldvt~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (260)
|+++.|||||+.|||||++||++. .+++++|+++|++..++....-.+.. ..+++..|+.-....+. -+...+|.
T Consensus 179 nv~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~ 257 (350)
T KOG2938|consen 179 NVTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQ-VYNGAYGN 257 (350)
T ss_pred CcCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhh-cccccCCc
Confidence 999999999999999999999997 67888899999999998876655543 23333444333333332 22334566
Q ss_pred CcccCCC
Q 024918 253 HGNFSFK 259 (260)
Q Consensus 253 ~g~~~~d 259 (260)
.++..+|
T Consensus 258 ~~~~~~d 264 (350)
T KOG2938|consen 258 IFTPYPD 264 (350)
T ss_pred cCCCCCc
Confidence 6655554
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1e-43 Score=320.99 Aligned_cols=187 Identities=27% Similarity=0.384 Sum_probs=154.6
Q ss_pred EEEecCCC--chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCC-Ccccc
Q 024918 22 LIIDTDPG--IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKP-RVAEF 98 (260)
Q Consensus 22 viiDtD~g--~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~-~~~~~ 98 (260)
||||||+| +||++||+|++.+|+++|+|||+++||++.+ .|+..++.++||.+|||+. .+|+..... ....+
T Consensus 1 vIlDTD~G~DiDDa~Al~lal~~p~~~llgIT~~~GN~~~~---~~~~~~n~~~gr~dIPVg~--~~~~~~~~~~~~~~~ 75 (293)
T cd02652 1 LILDTDIGGDPDDALALALAHALQKCDLLAVTITLADASAR---RAIDAVNRFYGRGDIPIGA--DYHGWPEDAKDHAKF 75 (293)
T ss_pred CEEeCCCCCChHHHHHHHHHhhCCCCceEEEEecCCcccHh---HHHHHHHHhcCCCCCcEee--CCCCCCCccccccce
Confidence 69999999 7999999999999999999999999999886 6677778889999999965 455544321 12223
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCccHHHHHHHHHHcC-CCceEEEEecchhHHHHHHhh------Ccch-hhccCeEEEec
Q 024918 99 AHGSDGMGNISLTPPK-AKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR------DSSF-ASKVKNIVVLG 169 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~-~~~~~~~a~~~l~~~l~~~-p~~vtilaiGpLTNiA~al~~------~P~l-~~ki~~iviMG 169 (260)
.||.++ ++.+. ......+|+++|+++++++ |++||||++|||||||.+|+. +|++ ++|||+||+||
T Consensus 76 ~~~~~~-----~~~~~~~~~~~~~A~~~i~~~l~~~~~~~vtivaiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMG 150 (293)
T cd02652 76 LLEGDR-----LHHDLESAEDALDAVKALRRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMG 150 (293)
T ss_pred eCCCCC-----CCCcccccccCccHHHHHHHHHHhcCCCCEEEEEcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeC
Confidence 344333 32222 1223468999999999987 789999999999999999999 9999 58999999999
Q ss_pred CCC-CCCCCCCCCCCCCCCCCHHHHHHHHhc----CCcEEE--EcCCccceeecCHH
Q 024918 170 GAF-FALGNVNPAAEANIYGDPEAADVVFTS----GANIAV--VGINITTQVKLTDA 219 (260)
Q Consensus 170 G~~-~~~Gn~~~~aE~N~~~DP~AA~~Vl~s----g~~i~~--vpldvt~~~~~~~~ 219 (260)
|++ ...||.+ .+||||++||+||++||++ ++|+++ +++|+++++..+..
T Consensus 151 G~~~~~~Gn~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~~~~~~ 206 (293)
T cd02652 151 GAFYDPDGNVQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHV 206 (293)
T ss_pred CCccCCCCCcc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccccCchh
Confidence 997 3569988 9999999999999999999 899988 69999999988775
No 18
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=98.26 E-value=1.3e-06 Score=77.82 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=78.7
Q ss_pred eEEEecCC--CchHHHHHHHHHc-CCCCeEEEEEEecCCCChH--HHHHHHHHHHHHhCCCCCCcccCCC--CCCCCCCC
Q 024918 21 KLIIDTDP--GIDDSMTILMAFQ-TPELEILGLTTIFGNVTTE--DATRNALTLCEMAGCPGVPVAEGSP--EPLKGGKP 93 (260)
Q Consensus 21 ~viiDtD~--g~DD~~AL~~al~-~p~v~v~gIttv~Gn~~~~--~~~~na~~ll~~~g~~~IPV~~Ga~--~pl~~~~~ 93 (260)
+|||=||+ .+||...|+-.|. +.++|+.||+.+++ ++.. ...+.+.++++.+++ ..|=-.=.. .|- +..
T Consensus 1 RviV~TDi~~EpDD~~SlvR~LlYsNe~dieGivattS-~~~~~~~~~~~i~~iIdaY~k-v~pNL~~H~~~yPs--~e~ 76 (260)
T PF07632_consen 1 RVIVLTDIGNEPDDAQSLVRLLLYSNEFDIEGIVATTS-TWHWSGVHPEWIHRIIDAYEK-VYPNLNKHAPGYPS--PEY 76 (260)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTGGGSEEEEEEE--B-TTB------HHHHHHHHHHHH-HHHHHTTTSTT-----HHH
T ss_pred CEEEeCCCCCCCchHHHHHHHHHhccccceeEEEEecc-cccCCCCCHHHHHHHHHHHHH-HHHHHHhcCCCCCC--HHH
Confidence 68999999 5999999887665 66899999998765 1111 233456666666653 111000000 110 000
Q ss_pred CccccccCCC--CCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCceEEEEecchhHHHHHHhh---------Ccchhhc
Q 024918 94 RVAEFAHGSD--GMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR---------DSSFASK 161 (260)
Q Consensus 94 ~~~~~~hg~~--Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~-p~~vtilaiGpLTNiA~al~~---------~P~l~~k 161 (260)
..+-...|.- |+.. ...-.+.++.++|++.+.+. +.||.|++-|-...||.||.. .++|.+|
T Consensus 77 L~s~vk~G~~~yg~~~------~G~~~~s~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~~~K 150 (260)
T PF07632_consen 77 LRSIVKQGNPVYGMPA------VGEGKDSEGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKETRSPEEAARFVSK 150 (260)
T ss_dssp HHHTEEE--SS-GGGG-------STT---HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHHHS-HHHHHHHHHT
T ss_pred HHHHHccCCcccCccc------CCCCCCChHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 0000111211 1110 11112378899999998876 689999999999999999998 6789999
Q ss_pred cCeEEEecC
Q 024918 162 VKNIVVLGG 170 (260)
Q Consensus 162 i~~iviMGG 170 (260)
+ ||+..++
T Consensus 151 l-rvy~I~d 158 (260)
T PF07632_consen 151 L-RVYSISD 158 (260)
T ss_dssp E-EEEEES-
T ss_pred E-EEEeccC
Confidence 9 6777664
No 19
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=80.47 E-value=2.2 Score=31.48 Aligned_cols=54 Identities=28% Similarity=0.290 Sum_probs=29.7
Q ss_pred eEEEecCCCc-hHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcc
Q 024918 21 KLIIDTDPGI-DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (260)
Q Consensus 21 ~viiDtD~g~-DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~ 81 (260)
.+|||+-+|. |..++++-.+. .-..+-||| . .+-+..-++|.++++.+.++||.
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~--~~g~ivVTT-P----q~la~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP--IDGAIVVTT-P----QELALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH----SEEEEEE--C----CC--HHHHHHHHHHHHCTT-EEE
T ss_pred EEEEeCCCCCCcHHHHHHHhCC--CCeEEEEeC-C----HHHHHHHHHHHHHHHHhcCCCcE
Confidence 4899999996 55566666554 223333333 2 22345567788888887889975
No 20
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=71.73 E-value=4.3 Score=34.16 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCCCh
Q 024918 33 SMTILMAFQTPELEILGLTTIFGNVTT 59 (260)
Q Consensus 33 ~~AL~~al~~p~v~v~gIttv~Gn~~~ 59 (260)
-.||.+.+.+|+++|+|+..|..|+..
T Consensus 71 E~Al~~v~~h~~IeVLG~iAVASnT~~ 97 (180)
T PF14097_consen 71 EQALEYVANHPDIEVLGAIAVASNTHG 97 (180)
T ss_pred HHHHHHHHcCCCceEEEEEEEEecCCC
Confidence 478999999999999999999888753
No 21
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=64.33 E-value=32 Score=28.25 Aligned_cols=71 Identities=13% Similarity=0.257 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcCCc
Q 024918 123 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 202 (260)
Q Consensus 123 ~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~sg~~ 202 (260)
...+.+.|...+ ++||++-. .++|..|..+| .+ +|+++||.+.. +......|.|.+.+-+--.+
T Consensus 31 ~~~la~~L~~~~-~ltVvTns--l~ia~~l~~~~----~~-~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~~~d 94 (161)
T PF00455_consen 31 TLELAKYLPDKK-NLTVVTNS--LPIANELSENP----NI-EVILLGGEVNP--------KSLSFVGPIALEALRQFRFD 94 (161)
T ss_pred HHHHHHHhhcCC-ceEEEECC--HHHHHHHHhcC----ce-EEEEeCCEEEc--------CCCcEECchHHHHHHhhccc
Confidence 445667776654 79998865 46788888888 34 79999999863 44567789999888777778
Q ss_pred EEEEcCC
Q 024918 203 IAVVGIN 209 (260)
Q Consensus 203 i~~vpld 209 (260)
+.+++-+
T Consensus 95 ~afi~~~ 101 (161)
T PF00455_consen 95 KAFIGAD 101 (161)
T ss_pred eEEeccc
Confidence 8888755
No 22
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=61.08 E-value=39 Score=30.27 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcCCc
Q 024918 123 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 202 (260)
Q Consensus 123 ~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~sg~~ 202 (260)
...|.+.|... .++||++-.. ++|..|..+|.+ ++++.||.+.. +.+....|.|.+.+=+-.++
T Consensus 118 ~~~la~~L~~~-~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~~--------~~~~~~G~~a~~~l~~~~~d 181 (269)
T PRK09802 118 TFEIARLMRKH-TDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLRR--------QSQSFYGDQAEQSLQNYHFD 181 (269)
T ss_pred HHHHHHhcCcC-CCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEec--------CCCceECHHHHHHHHhccCC
Confidence 34455555432 2588887663 567777777653 68999999862 34556677777777665566
Q ss_pred EEEEcCC
Q 024918 203 IAVVGIN 209 (260)
Q Consensus 203 i~~vpld 209 (260)
+.+++.+
T Consensus 182 ~afig~~ 188 (269)
T PRK09802 182 MLFLGVD 188 (269)
T ss_pred EEEEcCc
Confidence 6666544
No 23
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=59.52 E-value=2.4 Score=39.71 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=68.1
Q ss_pred CccHHHHHHHHHHcCC---CceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCC------CCCC------CCCCC
Q 024918 119 DKNASEFLVDKVSEYP---GEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFA------LGNV------NPAAE 183 (260)
Q Consensus 119 ~~~a~~~l~~~l~~~p---~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~------~Gn~------~~~aE 183 (260)
+++|++...+.. +.+ .++.+...+++|+.+.....+..-...+.+.+++++.... .|+. ...++
T Consensus 191 DPeAA~~vl~~~-k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~a 269 (350)
T KOG2938|consen 191 DPEAAHTVLTRT-KDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYNGAYGNIFTPYPDNIYVA 269 (350)
T ss_pred ChHHHHHHHhcC-CCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcccccCCccCCCCCcHHHHH
Confidence 466766544443 333 3677889999999999988888888888888999887532 2442 34689
Q ss_pred CCCCCCHHHHHHHHhcCCcEEEEcCCccceeecC
Q 024918 184 ANIYGDPEAADVVFTSGANIAVVGINITTQVKLT 217 (260)
Q Consensus 184 ~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~ 217 (260)
||++.||-+++.++.+..-.+..|. +.+..++
T Consensus 270 ~~i~~d~~~~~~~~~~~~~~~~~~~--~~~~v~~ 301 (350)
T KOG2938|consen 270 FAIFPDPLAAKTVYVSVDVLLDSPT--RGQMVVD 301 (350)
T ss_pred HHhhhhhhhhhhhhheeeeeecCcc--eeeeEEe
Confidence 9999999999998887554444443 3444444
No 24
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=54.65 E-value=61 Score=28.64 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcCCc
Q 024918 123 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 202 (260)
Q Consensus 123 ~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~sg~~ 202 (260)
+..|.+.+... ++||++-+. ++|.+|..+|.+ ++++.||.+.. +.+.+..|. ++.+-+-..+
T Consensus 105 ~~~la~~L~~~--~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~--------~~~~~~G~~-~~~l~~~~~d 166 (251)
T PRK13509 105 AFLLGRELCGK--PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK--------SQSITLSPQ-GSENSLYAGH 166 (251)
T ss_pred HHHHHHHhCCC--CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC--------CcceeECHH-HHHHHhCcCC
Confidence 34466666432 588888775 777778777754 58999999852 345667786 4554344567
Q ss_pred EEEEcCC
Q 024918 203 IAVVGIN 209 (260)
Q Consensus 203 i~~vpld 209 (260)
+.+++.+
T Consensus 167 ~aFig~~ 173 (251)
T PRK13509 167 WMFTSGK 173 (251)
T ss_pred EEEECCC
Confidence 7777655
No 25
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=54.53 E-value=61 Score=27.35 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCCceEEEecCCC-------chHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 024918 17 TNPAKLIIDTDPG-------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (260)
Q Consensus 17 ~~~~~viiDtD~g-------~DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (260)
..+.+|.|+-|.| .||+..++-.+. .|.+++.||.|-.++..
T Consensus 108 ~~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~~~l~l~Gl~th~~~~d 157 (218)
T PF01168_consen 108 GKPLKVHLKVDTGMGRLGVRPEELEELAEAIKALPNLRLEGLMTHFAHAD 157 (218)
T ss_dssp TSTEEEEEEBESSSSSSSBECHHHHHHHHHHHHTTTEEEEEEEEBGSSTT
T ss_pred CCceEEEEeecccccccCCCHHHHHHHHHHHhcCCCceEeeEeccccccC
Confidence 3567899999986 688888877776 78999999998877664
No 26
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.89 E-value=43 Score=27.43 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCC
Q 024918 30 IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLK 89 (260)
Q Consensus 30 ~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~ 89 (260)
.|++...+ ...+++++||++.+|.- ..-+.-+...|+..|..+|.|+.|-..|..
T Consensus 52 p~e~v~aA---~~~dv~vIgvSsl~g~h--~~l~~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 52 PEEAVRAA---VEEDVDVIGVSSLDGGH--LTLVPGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHHH---HhcCCCEEEEEeccchH--HHHHHHHHHHHHHhCCcceEEeecCccCch
Confidence 35555444 23479999999988752 233556677788889999999888877754
No 27
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=47.38 E-value=76 Score=27.92 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCC-ceEEEEecchhHHHHHHhhCcchhhccC-eEEEecCCCC-CCCCCCCCCCCCCCCCHHHHHHHHh
Q 024918 122 ASEFLVDKVSEYPG-EVSILALGPLTNLALAIKRDSSFASKVK-NIVVLGGAFF-ALGNVNPAAEANIYGDPEAADVVFT 198 (260)
Q Consensus 122 a~~~l~~~l~~~p~-~vtilaiGpLTNiA~al~~~P~l~~ki~-~iviMGG~~~-~~Gn~~~~aE~N~~~DP~AA~~Vl~ 198 (260)
-++++.+.....++ ++.++.+|.-.+=...-...++..+..+ .+|+|+|--. .+| |.+|+.+|.
T Consensus 18 v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG-------------P~kARE~l~ 84 (277)
T COG1927 18 VVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG-------------PKKAREILS 84 (277)
T ss_pred HHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC-------------chHHHHHHh
Confidence 34555554444343 6788888876666644444556666666 6788877542 233 888998887
Q ss_pred -cCCcEEEEc
Q 024918 199 -SGANIAVVG 207 (260)
Q Consensus 199 -sg~~i~~vp 207 (260)
|++|..+++
T Consensus 85 ~s~~Paiiig 94 (277)
T COG1927 85 DSDVPAIIIG 94 (277)
T ss_pred hcCCCEEEec
Confidence 688887776
No 28
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=43.54 E-value=1.1e+02 Score=26.89 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcCCcE
Q 024918 124 EFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANI 203 (260)
Q Consensus 124 ~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~sg~~i 203 (260)
-.+.+.|... .++||++-. .++|..|..+|++ ++++.||.+.. +.+....+.|.+.+=+-.+++
T Consensus 105 ~~la~~L~~~-~~ltvvTns--l~i~~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~~~~~l~~~~~D~ 168 (252)
T PRK10681 105 PWIIEAIDNE-LPFTAVCYS--LNTFLALQEKPHC-----RAILCGGEFHA--------SNAIFKPLDFQQTLDNICPDI 168 (252)
T ss_pred HHHHHhcCCC-CCeEEEECC--HHHHHHHhhCCCC-----EEEEECcEEec--------CcceeeCHHHHHHHHhhCCCE
Confidence 3455555432 258888763 3456667777654 58999999852 335567788777776666677
Q ss_pred EEEcCC
Q 024918 204 AVVGIN 209 (260)
Q Consensus 204 ~~vpld 209 (260)
.+++.+
T Consensus 169 afig~~ 174 (252)
T PRK10681 169 AFYSAA 174 (252)
T ss_pred EEEeCc
Confidence 777654
No 29
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.52 E-value=84 Score=23.69 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=40.3
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCC
Q 024918 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 90 (260)
Q Consensus 22 viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~ 90 (260)
++++.+...++...-+. ..+.+++++|+...+ .....+.+.++.+..+. +++|..|-..+...
T Consensus 31 ~~l~~~~~~~~~~~~i~---~~~pdiV~iS~~~~~--~~~~~~~~~~~~~~~p~-~~~ivvGG~~~t~~ 93 (125)
T cd02065 31 IDLGVDVPPEEIVEAAK---EEDADVVGLSALSTT--HMEAMKLVIEALKELGI-DIPVVVGGAHPTAD 93 (125)
T ss_pred EEcCCCCCHHHHHHHHH---HcCCCEEEEecchHh--HHHHHHHHHHHHHhcCC-CCeEEEeCCcCCcc
Confidence 44555555555544332 346799999987665 23456677777777643 89999887665543
No 30
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=42.83 E-value=1.1e+02 Score=29.51 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHcCCCceEEEE---ecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCC
Q 024918 120 KNASEFLVDKVSEYPGEVSILA---LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (260)
Q Consensus 120 ~~a~~~l~~~l~~~p~~vtila---iGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn 177 (260)
.+-++.|.+.++....++.+++ -|.++=.|.++.....-..+++.+++|||-++..-|
T Consensus 153 dDYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 153 EDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 4556777777766533344443 466667777887766556679999999999875433
No 31
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=41.33 E-value=86 Score=29.53 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=38.4
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCC--------hHHHHHHHHHHHHHhCCCCCCcc
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT--------TEDATRNALTLCEMAGCPGVPVA 81 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~--------~~~~~~na~~ll~~~g~~~IPV~ 81 (260)
+||++=.-.|+|=++|..++... ..||.||+....+.. .++....|+++.+.+| ||.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg---Ip~~ 66 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG---IPHY 66 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EE
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC---CCEE
Confidence 47888899999999988777655 699999998765432 2345677888888876 6654
No 32
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=40.48 E-value=1.5e+02 Score=25.76 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=30.1
Q ss_pred CCceEEEecCCC---------chHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 024918 18 NPAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (260)
Q Consensus 18 ~~~~viiDtD~g---------~DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (260)
.+.+|+|.-|.| .+++..++-.+. .|.+++.|+.|-.+...
T Consensus 119 ~~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~ 169 (229)
T TIGR00044 119 PPLNVLLQINISDEESKSGIQPEELLELAIQIEELKHLKLRGLMTIGAPTD 169 (229)
T ss_pred CCceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC
Confidence 445777777762 467887776665 58899999998877654
No 33
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=39.76 E-value=1.5e+02 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=43.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecC------CCChHHHHHHHHHHHHHhC
Q 024918 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG------NVTTEDATRNALTLCEMAG 74 (260)
Q Consensus 18 ~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~G------n~~~~~~~~na~~ll~~~g 74 (260)
.++||++=.=.|+|=.+|..++... ..||.||+.-.+ .|...+-.+.|.++.+.+|
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LG 63 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLG 63 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhC
Confidence 4678999999999988876665544 899999997532 3566677788888888887
No 34
>CHL00181 cbbX CbbX; Provisional
Probab=39.30 E-value=56 Score=29.57 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=39.0
Q ss_pred CccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEE
Q 024918 119 DKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVV 167 (260)
Q Consensus 119 ~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~ivi 167 (260)
..++++.|.+.+....+.+.||..|.-..+..++..+|.+.+++..++-
T Consensus 144 ~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~ 192 (287)
T CHL00181 144 GSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVD 192 (287)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEE
Confidence 3567777888787766778899999888888888899999999875444
No 35
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=37.48 E-value=1.5e+02 Score=25.98 Aligned_cols=70 Identities=7% Similarity=0.247 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcCCc
Q 024918 123 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 202 (260)
Q Consensus 123 ~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~sg~~ 202 (260)
+..|.+.+... ++||++-.+ ++|..|...|. + ++++.||.+. .+.+....|.|.+.+=+-..+
T Consensus 105 ~~~l~~~L~~~--~ltVvTNs~--~ia~~l~~~~~----~-~vil~GG~~~--------~~~~~~~G~~a~~~l~~~~~d 167 (240)
T PRK10411 105 CWYLARQLPDI--NIQVFTNSH--PICQELGKRER----I-QLISSGGTLE--------RKYGCYVNPSLISQLKSLEID 167 (240)
T ss_pred HHHHHHhhCCC--CeEEEeCCH--HHHHHHhcCCC----C-EEEEECCEEe--------CCCCceECHHHHHHHHhcCCC
Confidence 34455555422 467666543 35556666665 3 5889999986 345667789988887666677
Q ss_pred EEEEcCC
Q 024918 203 IAVVGIN 209 (260)
Q Consensus 203 i~~vpld 209 (260)
..+++.+
T Consensus 168 ~afis~~ 174 (240)
T PRK10411 168 LFIFSCE 174 (240)
T ss_pred EEEEece
Confidence 7777655
No 36
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.55 E-value=61 Score=25.94 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q 024918 42 TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (260)
Q Consensus 42 ~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl 88 (260)
..+.+++|+|+..+.+. ...+.+...|+..|..++||..|-..+.
T Consensus 48 ~~~adiVglS~L~t~~~--~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 48 ETDADAILVSSLYGHGE--IDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HcCCCEEEEeccccCCH--HHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 34789999998776543 3466777788888876899998876543
No 37
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=36.31 E-value=8.9 Score=36.06 Aligned_cols=33 Identities=33% Similarity=0.727 Sum_probs=21.9
Q ss_pred HHHHHHcCC-CceEEEEecchhHHHHHHhhCcchhhccCeEE
Q 024918 126 LVDKVSEYP-GEVSILALGPLTNLALAIKRDSSFASKVKNIV 166 (260)
Q Consensus 126 l~~~l~~~p-~~vtilaiGpLTNiA~al~~~P~l~~ki~~iv 166 (260)
+.+.+..-| +.++|||+||||. |.+.++|+++.
T Consensus 119 ireEvt~iP~dg~~vIATGPLTs--------~~La~~i~~lt 152 (439)
T COG1206 119 IREEVTEIPPDGITVIATGPLTS--------DALAEKIKELT 152 (439)
T ss_pred EccccccCCCCCcEEEecCCCCC--------HHHHHHHHHhh
Confidence 334444444 7899999999997 44555666554
No 38
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=33.62 E-value=35 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.3
Q ss_pred CceEEEecCCCchHHHHHHH
Q 024918 19 PAKLIIDTDPGIDDSMTILM 38 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~ 38 (260)
.--+|++|+.+.||..|++-
T Consensus 35 ~l~~~L~T~~s~DDI~AV~C 54 (65)
T PF09078_consen 35 SLEVWLETSVSADDIIAVCC 54 (65)
T ss_dssp EEEEEE-STSSHHHHHHHHT
T ss_pred eEEEEECCCCChhhEEEEEE
Confidence 45799999999999999764
No 39
>PRK02628 nadE NAD synthetase; Reviewed
Probab=33.57 E-value=1.2e+02 Score=31.10 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=46.9
Q ss_pred CceEEEecCCCchHHHHHHHHHcC------CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCC--CCCc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQT------PELEILGLTTIFGNVTTEDATRNALTLCEMAGCP--GVPV 80 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~------p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~--~IPV 80 (260)
..+|+|---.|+|-+++++++... +..+|.||+. .|..+.+.....|..+.+.+|-+ .||+
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi~~~~i~I 429 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGVTAREIDI 429 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 568999999999999887776543 3578999987 55555667788999999999853 3554
No 40
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=33.54 E-value=89 Score=28.36 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=18.2
Q ss_pred CCCccHHHHHHHHHHcCCCceEEEEecchh
Q 024918 117 KCDKNASEFLVDKVSEYPGEVSILALGPLT 146 (260)
Q Consensus 117 ~~~~~a~~~l~~~l~~~p~~vtilaiGpLT 146 (260)
+....+.++|++. .+-.++.-||.|
T Consensus 188 p~~~~~l~~i~e~-----~P~v~ii~GPpt 212 (304)
T COG2248 188 PINDEALEFILEK-----RPDVLIIGGPPT 212 (304)
T ss_pred CCccHHHHHHHhc-----CCCEEEecCCch
Confidence 3456778887664 356888899999
No 41
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.63 E-value=1.2e+02 Score=27.10 Aligned_cols=51 Identities=27% Similarity=0.428 Sum_probs=30.3
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g 74 (260)
-.|||||-+|..|.-+.++.-... -++ |+++.|.+... .++.+..+++..+
T Consensus 168 D~vIID~PP~~g~~d~~i~~~~~~--g~v-iVt~p~~~~~~-~v~ka~~~~~~~~ 218 (265)
T COG0489 168 DYVIIDTPPGTGDADATVLQRIPD--GVV-IVTTPGKTALE-DVKKAIDMLEKAG 218 (265)
T ss_pred CEEEEeCCCCchHHHHHHHhccCC--eEE-EEeCCccchHH-HHHHHHHHHHhcC
Confidence 479999999998888777665432 222 33445655433 3444445555444
No 42
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=32.44 E-value=2.2e+02 Score=26.11 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=31.3
Q ss_pred CCceEEEecCCC-------c-hHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 024918 18 NPAKLIIDTDPG-------I-DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (260)
Q Consensus 18 ~~~~viiDtD~g-------~-DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (260)
.+.+|+|+-|+| . +|+..++-.+. .|.+++.||.+-.|...
T Consensus 120 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~h~g~~~ 169 (353)
T cd06820 120 RPLEVLVEVDSGMNRCGVQTPEDAVALARAIASAPGLRFRGIFTYPGHSY 169 (353)
T ss_pred CeeEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCcEEEEEEecCCccC
Confidence 456899999975 3 67777766555 58899999998877654
No 43
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.97 E-value=2e+02 Score=22.89 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCC
Q 024918 42 TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEP 87 (260)
Q Consensus 42 ~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~p 87 (260)
..+.++++|++..+. .......+.+.|+..|..+++|..|-..|
T Consensus 51 e~~adii~iSsl~~~--~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 51 EADVHVVGVSSLAGG--HLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HcCCCEEEEcCchhh--hHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 347899999876654 22234555555666676689999886555
No 44
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=31.01 E-value=65 Score=29.49 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=36.9
Q ss_pred CceEEEecCCCchHHH-HHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcc
Q 024918 19 PAKLIIDTDPGIDDSM-TILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~-AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~ 81 (260)
.-.+||||-+|++|.. .+.--+... --||.++ ++.+-+.+-+++-.++|.+..|||.
T Consensus 157 lDyLviDtPPGtsDehls~~~~~~~~---~gAviVT---TPQ~vAl~Dv~K~i~fc~K~~I~il 214 (300)
T KOG3022|consen 157 LDYLVIDTPPGTSDEHLSLVQFLRES---DGAVIVT---TPQEVALQDVRKEIDFCRKAGIPIL 214 (300)
T ss_pred cCEEEEeCCCCCChhhhheeeccccc---CceEEEe---CchhhhhHHHHhhhhhhhhcCCceE
Confidence 4579999999987764 333222211 1133332 2345567788899999998899975
No 45
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=29.86 E-value=2.7e+02 Score=24.62 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhc
Q 024918 120 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 199 (260)
Q Consensus 120 ~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~s 199 (260)
.+...++++.+...+. +++++-+. |+|..|...|.. .+++.||.+. .+.+.+..|.|.+.+=+-
T Consensus 100 GTT~~~la~~L~~~~~-ltviTNsl--~ia~~l~~~~~~-----~vi~~GG~~~--------~~~~~~~G~~a~~~l~~~ 163 (253)
T COG1349 100 GTTTLALARALPDDNN-LTVITNSL--NIAAALLEKPNI-----EVILLGGTVR--------KKSGSFVGPLAEEFLRQF 163 (253)
T ss_pred CcHHHHHHHHhCcCCC-eEEEeCCH--HHHHHHHhCCCC-----eEEEeCcEEE--------cCCCeEEcHHHHHHHHhC
Confidence 3445556666655433 77777664 456666666532 4588899885 345567777777777666
Q ss_pred CCcEEEEcCC
Q 024918 200 GANIAVVGIN 209 (260)
Q Consensus 200 g~~i~~vpld 209 (260)
.++..+++.+
T Consensus 164 ~~d~aFig~~ 173 (253)
T COG1349 164 NFDKAFIGAD 173 (253)
T ss_pred cccEEEEecc
Confidence 6777777655
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=28.18 E-value=1e+02 Score=27.15 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeE
Q 024918 120 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNI 165 (260)
Q Consensus 120 ~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~i 165 (260)
.++.+.+.+.+.++.+++.++.+|.-+.+..++..+|.+.+++...
T Consensus 127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~ 172 (261)
T TIGR02881 127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPIS 172 (261)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceE
Confidence 4567777777777777888888898888888888999999998543
No 47
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.68 E-value=98 Score=24.80 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=35.3
Q ss_pred chHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q 024918 30 IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (260)
Q Consensus 30 ~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl 88 (260)
.++..+.+. .-+.+++++++..+. ....++.....|+..+..+++|..|-.-+.
T Consensus 43 ~e~i~~~a~---~~~~d~V~lS~~~~~--~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 43 QEEFIDAAI---ETDADAILVSSLYGH--GEIDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHH---HcCCCEEEEcCcccc--CHHHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 455544432 235789999877663 344566777777777777899888875544
No 48
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=27.09 E-value=3e+02 Score=25.92 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCceEEEecCCC-----c--h-HHHHHHHHHc-CCCCeEEEEEEecCC
Q 024918 18 NPAKLIIDTDPG-----I--D-DSMTILMAFQ-TPELEILGLTTIFGN 56 (260)
Q Consensus 18 ~~~~viiDtD~g-----~--D-D~~AL~~al~-~p~v~v~gIttv~Gn 56 (260)
.+-+|+|+-|.| + + |+.+++-.+. .+.+++.||-+-.|.
T Consensus 132 ~~l~V~lkVDtGm~R~Gv~~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 132 LTLRINLELDVGLHRGGFADPQTLPKALTAIDAPPRLRFSGLMGYEPH 179 (379)
T ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhCCCceEEEEEEEccc
Confidence 456899999975 3 3 5777777665 578999999987775
No 49
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=26.18 E-value=3.4e+02 Score=23.94 Aligned_cols=69 Identities=13% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcCCcEEE
Q 024918 126 LVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAV 205 (260)
Q Consensus 126 l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~sg~~i~~ 205 (260)
+.+.+...+ ++||++... ++|..|...+. .+ ++++.||.+.. +.+....|.|.+.+=+--.++.+
T Consensus 106 la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~---~~-~v~l~GG~~~~--------~~~~~~G~~a~~~l~~~~~D~af 170 (256)
T PRK10434 106 MVPLLSRFN-NITVMTNSL--HIVNALSELDN---EQ-TILMPGGTFRK--------KSASFHGQLAENAFEHFTFDKLF 170 (256)
T ss_pred HHHHhccCC-CeEEEECCH--HHHHHHhhCCC---CC-EEEEECCEEeC--------CCCeEECHHHHHHHHhCcCCEEE
Confidence 444443321 366665443 23444443221 12 68999999863 23445566666655444455555
Q ss_pred EcCC
Q 024918 206 VGIN 209 (260)
Q Consensus 206 vpld 209 (260)
++.+
T Consensus 171 i~~~ 174 (256)
T PRK10434 171 IGTD 174 (256)
T ss_pred EcCc
Confidence 5433
No 50
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=25.61 E-value=77 Score=28.00 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=18.3
Q ss_pred CCCCCccccCCCCCceEEEecCCCc
Q 024918 6 SHGSGVVLGSSTNPAKLIIDTDPGI 30 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~viiDtD~g~ 30 (260)
.|-.++...+...+-.++||-|+|.
T Consensus 85 ~H~w~sr~~~~e~PD~lvfDLDP~~ 109 (227)
T cd04861 85 LHPWLSRADDLERPDRLVFDLDPGP 109 (227)
T ss_pred eeCCCCCCCCCCCCCEEEEECCCCC
Confidence 4555666655667889999999973
No 51
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=25.11 E-value=2.6e+02 Score=24.41 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=42.8
Q ss_pred CceEEEecCCCchHHHHHHHHHcC-CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQT-PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~-p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~ 75 (260)
..+|++=--+|+|-++.+.++... +..++.+++.-++... ......+.++.+.+|-
T Consensus 23 ~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~-~~~~~~a~~~a~~lgi 79 (248)
T cd00553 23 FKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSS-EETREDAKELAEALGI 79 (248)
T ss_pred CCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCC-HHHHHHHHHHHHHhCC
Confidence 467999999999999887777653 2368999987776543 3456788899999885
No 52
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=24.12 E-value=3.9e+02 Score=23.36 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=32.1
Q ss_pred CCCceEEEecCCC---------chHHHHHHHHHc--CCCCeEEEEEEecCCCC
Q 024918 17 TNPAKLIIDTDPG---------IDDSMTILMAFQ--TPELEILGLTTIFGNVT 58 (260)
Q Consensus 17 ~~~~~viiDtD~g---------~DD~~AL~~al~--~p~v~v~gIttv~Gn~~ 58 (260)
..+.+|+|+.|.| ++++..|+-.+. .|.+++.|+-|..|...
T Consensus 115 ~~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~ 167 (227)
T cd06822 115 REPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGY 167 (227)
T ss_pred CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCC
Confidence 3456788888753 478888887774 68999999999888643
No 53
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=23.38 E-value=5.2e+02 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=27.2
Q ss_pred CCceEEEecCCC-----c---hHHHHHHHHHc-CCCCeEEEEEEecCC
Q 024918 18 NPAKLIIDTDPG-----I---DDSMTILMAFQ-TPELEILGLTTIFGN 56 (260)
Q Consensus 18 ~~~~viiDtD~g-----~---DD~~AL~~al~-~p~v~v~gIttv~Gn 56 (260)
.+.+|+|+-|+| + +++.+++-.+. .|.+++.||.+-.|.
T Consensus 124 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~y~G~ 171 (358)
T cd06819 124 VRLDVLVEIDVGQGRCGVPPGEAALALARTIAALPGLRFAGLQAYHGH 171 (358)
T ss_pred CceEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCceEeEEEeeCch
Confidence 456899998874 4 35777665544 578999999765443
No 54
>PRK13057 putative lipid kinase; Reviewed
Probab=23.22 E-value=3.9e+02 Score=23.73 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=12.8
Q ss_pred CCCCCCCCHHHHHHHHhcC
Q 024918 182 AEANIYGDPEAADVVFTSG 200 (260)
Q Consensus 182 aE~N~~~DP~AA~~Vl~sg 200 (260)
.++++-.||+.+-..+..+
T Consensus 90 r~Lg~~~~~~~a~~~i~~~ 108 (287)
T PRK13057 90 RTLGIPLDLEAAARVIATG 108 (287)
T ss_pred HHcCCCCCHHHHHHHHHcC
Confidence 4556667888776666665
No 55
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=23.10 E-value=4.8e+02 Score=22.30 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=27.7
Q ss_pred CceE--EEecCC-----Cc--hHHHHHHHHHc-CCCCeEEEEEEecCCCC
Q 024918 19 PAKL--IIDTDP-----GI--DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (260)
Q Consensus 19 ~~~v--iiDtD~-----g~--DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (260)
+.+| -||||. |+ +|+..++-.+. .|.+++.||-|=.++..
T Consensus 118 ~~~v~l~id~~~Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH~a~~~ 167 (224)
T cd06824 118 PLNVCIQVNISGEDSKSGVAPEDAAELAEAISQLPNLRLRGLMAIPAPTD 167 (224)
T ss_pred CCcEEEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Confidence 3455 778876 34 57777765554 68899999988767643
No 56
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=23.06 E-value=3e+02 Score=22.10 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=34.1
Q ss_pred eEEEecCCCchHHHHHHHHHcC--C----CCeEEEEEEecCCC-ChHHHHHHHHHHHHHhCC
Q 024918 21 KLIIDTDPGIDDSMTILMAFQT--P----ELEILGLTTIFGNV-TTEDATRNALTLCEMAGC 75 (260)
Q Consensus 21 ~viiDtD~g~DD~~AL~~al~~--p----~v~v~gIttv~Gn~-~~~~~~~na~~ll~~~g~ 75 (260)
+|++=--+|.| ..++++++.. + ++++.+++.-+|.. ..+.....+.++.+.+|.
T Consensus 1 ~v~v~~SGG~D-S~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i 61 (185)
T cd01993 1 RILVALSGGKD-SLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGI 61 (185)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 35555667785 4445454431 1 57999998888754 234556677777777764
No 57
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=22.96 E-value=91 Score=27.56 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=18.2
Q ss_pred CCCCCccccCCCCCceEEEecCCCc
Q 024918 6 SHGSGVVLGSSTNPAKLIIDTDPGI 30 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~viiDtD~g~ 30 (260)
+|-.+++......+-.++||-|+|.
T Consensus 86 ~H~w~sr~~~~e~PD~lvfDLDP~~ 110 (228)
T cd04865 86 LHPWPSRAGDLDHPDELVIDLDPQP 110 (228)
T ss_pred eeCCccCcCCCCCCCEEEEECCCCC
Confidence 3555566655667889999999973
No 58
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=22.78 E-value=4.7e+02 Score=23.79 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=27.8
Q ss_pred CCceEEEecCCC-----c--hHHHHHHHHH---cCCCCeEEEEEEecCCC
Q 024918 18 NPAKLIIDTDPG-----I--DDSMTILMAF---QTPELEILGLTTIFGNV 57 (260)
Q Consensus 18 ~~~~viiDtD~g-----~--DD~~AL~~al---~~p~v~v~gIttv~Gn~ 57 (260)
.+.+|+|+-|.| + ++..++..+. ..+.+++.||.+=.|..
T Consensus 110 ~~~~V~l~ID~G~~R~Gv~~~~~~~l~~~~~i~~~~~l~l~Gl~~h~g~~ 159 (345)
T cd07376 110 VRLRVMLEVDVGGHRSGVRPEEAAALALADAVQASPGLRLAGVMAYEGHI 159 (345)
T ss_pred CeeEEEEEeCCCCCcCCCCCcHHHHHHHHHHhccCCCeEEeEEEeecchh
Confidence 456899999975 4 3555555443 46789999998877753
No 59
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.53 E-value=96 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCCCCccccCCCCCceEEEecCCCc----hHHHHHHHHH
Q 024918 6 SHGSGVVLGSSTNPAKLIIDTDPGI----DDSMTILMAF 40 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~viiDtD~g~----DD~~AL~~al 40 (260)
+|--+++......+-.++||-|+|. +|+...+.++
T Consensus 101 ~H~w~s~~~~~~~PD~lvfDLDP~~~~~f~~v~~~A~~~ 139 (245)
T TIGR02778 101 FHIWGARIDAPEKPDRIVFDLDPGPGVAWKLVVEAAQLI 139 (245)
T ss_pred eeCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 3555555555667889999999964 4444444433
No 60
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=22.43 E-value=4.2e+02 Score=21.38 Aligned_cols=94 Identities=26% Similarity=0.372 Sum_probs=55.9
Q ss_pred HHHHHHHc-CCCceEEEEecchhHHHH--HHhhC-cc--------h---hhccCeEE-----EecCCCCCCCCCCCCCCC
Q 024918 125 FLVDKVSE-YPGEVSILALGPLTNLAL--AIKRD-SS--------F---ASKVKNIV-----VLGGAFFALGNVNPAAEA 184 (260)
Q Consensus 125 ~l~~~l~~-~p~~vtilaiGpLTNiA~--al~~~-P~--------l---~~ki~~iv-----iMGG~~~~~Gn~~~~aE~ 184 (260)
.+++.+|+ .|+++.|+++| ||=.. +..+. -+ + .++++-|+ +|..++. |.
T Consensus 15 ~iv~~lr~~~~~~~eI~AlG--TNa~AT~~MlKaGA~~gATGENaIv~n~~~aDiIvGpigIv~a~sml--GE------- 83 (131)
T PF12953_consen 15 QIVEKLRKELPEEVEIIALG--TNAIATSAMLKAGANEGATGENAIVVNARKADIIVGPIGIVIANSML--GE------- 83 (131)
T ss_pred HHHHHHHHhCCCCcEEEEEe--hhHHHHHHHHHcCCCCcccccchheeccCCCCEEECcHHHhccCccc--cc-------
Confidence 36676665 58889999999 66332 22222 11 2 34444221 1122221 32
Q ss_pred CCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHH
Q 024918 185 NIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCK 240 (260)
Q Consensus 185 N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (260)
.-|.=|+.|.+|...-.++|++-|+-..+.-+ ..|+.+++.++.+
T Consensus 84 ---iTp~mA~AI~~S~A~KiLiPl~~~~~~ivG~~--------~~pl~~li~~~v~ 128 (131)
T PF12953_consen 84 ---ITPAMAEAIAQSPAKKILIPLNRCNIEIVGVE--------NEPLPHLIDEAVE 128 (131)
T ss_pred ---ccHHHHHHHhcCCCCEEEEeecCCCCEEECCC--------CCCHHHHHHHHHH
Confidence 34888999999999999999998776655422 3455555555443
No 61
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=22.13 E-value=4.5e+02 Score=22.31 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCceEEEecCCC---------chHHHHHHHHH-cCCCCeEEEEEEecCCCC
Q 024918 18 NPAKLIIDTDPG---------IDDSMTILMAF-QTPELEILGLTTIFGNVT 58 (260)
Q Consensus 18 ~~~~viiDtD~g---------~DD~~AL~~al-~~p~v~v~gIttv~Gn~~ 58 (260)
.+.+|+|.-|+| .||+..++-.+ ..+.+++.||.+-.++..
T Consensus 115 ~~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~~~l~~~Gi~sh~s~~~ 165 (222)
T cd00635 115 RVLDVLVQVNIGGEESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTE 165 (222)
T ss_pred CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHHcCCCCcEEEEEEECCCCC
Confidence 345677776655 26766665444 467899999987555543
No 62
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=22.12 E-value=90 Score=27.70 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=20.7
Q ss_pred hccCeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhc
Q 024918 160 SKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 199 (260)
Q Consensus 160 ~ki~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~s 199 (260)
..+..+.+||-+- | ..+||.||+.||+-
T Consensus 180 ~gm~gaCLMGeT~---G---------Y~vDpkaAkaVL~v 207 (258)
T COG2047 180 RGMDGACLMGETP---G---------YLVDPKAAKAVLEV 207 (258)
T ss_pred cCCCceeeccCCC---c---------cccChHHHHHHHHH
Confidence 4566677777553 3 47899999999985
No 63
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.68 E-value=3e+02 Score=20.50 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=32.1
Q ss_pred EEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCC
Q 024918 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPE 86 (260)
Q Consensus 22 viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~ 86 (260)
.++|.+...++....+... +.+++|+|+.+.. .........+.++.. .++++|..|-..
T Consensus 32 ~~~d~~~~~~~l~~~~~~~---~pd~V~iS~~~~~--~~~~~~~l~~~~k~~-~p~~~iv~GG~~ 90 (121)
T PF02310_consen 32 DILDANVPPEELVEALRAE---RPDVVGISVSMTP--NLPEAKRLARAIKER-NPNIPIVVGGPH 90 (121)
T ss_dssp EEEESSB-HHHHHHHHHHT---TCSEEEEEESSST--HHHHHHHHHHHHHTT-CTTSEEEEEESS
T ss_pred EEECCCCCHHHHHHHHhcC---CCcEEEEEccCcC--cHHHHHHHHHHHHhc-CCCCEEEEECCc
Confidence 4778877666666644443 4688999874332 222222333333332 357888776544
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=21.62 E-value=2.2e+02 Score=25.58 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEE
Q 024918 120 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVV 167 (260)
Q Consensus 120 ~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~ivi 167 (260)
.++.+.|.+.+......+.+|+.|..-.+-.+++.+|.+.+++...+-
T Consensus 144 ~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~ 191 (284)
T TIGR02880 144 QEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVD 191 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEE
Confidence 456677788887666688899988866677788889999999874444
No 65
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=21.47 E-value=2.4e+02 Score=22.99 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHH---HHHHHHHHHHHhC
Q 024918 27 DPGIDDSMTILMAFQTPELEILGLTTIFGNVTTED---ATRNALTLCEMAG 74 (260)
Q Consensus 27 D~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~---~~~na~~ll~~~g 74 (260)
=+|.|=.+++.++.. ...++.+|+..+|....++ ....+.+.+..++
T Consensus 7 SGG~DS~~la~ll~~-~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~ 56 (177)
T cd01712 7 SGGIDSPVAAWLLMK-RGIEVDALHFNSGPFTSEKAREKVEDLARKLARYS 56 (177)
T ss_pred cCChhHHHHHHHHHH-cCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhC
Confidence 357765555544544 4789999999888755442 3444444445454
No 66
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.78 E-value=2.3e+02 Score=21.36 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=35.2
Q ss_pred EEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCC
Q 024918 23 IIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (260)
Q Consensus 23 iiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl 88 (260)
.++.+....+....+. .-+.++++++++.+. ....+....+.++..+..+++|..|-..+.
T Consensus 32 ~lg~~~~~~~l~~~~~---~~~pdvV~iS~~~~~--~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 32 DLGVDVPPEEIVEAAK---EEDADAIGLSGLLTT--HMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred ECCCCCCHHHHHHHHH---HcCCCEEEEeccccc--cHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 3345544555554432 335789999876443 223345555555555544899988876544
No 67
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.65 E-value=1e+02 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCCCCccccCCCCCceEEEecCCC----chHHHHHHHHH
Q 024918 6 SHGSGVVLGSSTNPAKLIIDTDPG----IDDSMTILMAF 40 (260)
Q Consensus 6 ~~~~~~~~~~~~~~~~viiDtD~g----~DD~~AL~~al 40 (260)
+|-.++.... ..+-.++||-|+| .+|+...+.++
T Consensus 81 ~H~w~~~~~~-e~PD~lvfDLDP~~~~~f~~v~~~A~~v 118 (223)
T cd04866 81 LHIPFQTIES-NKPSEIVFDLDPPSRDHFSLAVEAANLL 118 (223)
T ss_pred eeCCcccCCC-CCCCeEEEECCCCCCCCHHHHHHHHHHH
Confidence 4555666666 7788999999996 34554444443
No 68
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=20.61 E-value=4e+02 Score=23.38 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=35.9
Q ss_pred CceEEEecCCCchHHHHHHHHHc------CCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQ------TPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~------~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g 74 (260)
..+|++=.-+|.| .++|++++. ...++|.+|+..+|....+ ...+..+++.+|
T Consensus 29 ~~kilVa~SGG~D-S~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~--~~~~~~~~~~lg 87 (258)
T PRK10696 29 GDRVMVCLSGGKD-SYTLLDILLNLQKRAPINFELVAVNLDQKQPGFP--EHVLPEYLESLG 87 (258)
T ss_pred CCEEEEEecCCHH-HHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCC--HHHHHHHHHHhC
Confidence 4578888888885 788887773 1257999999888854322 223566666665
Done!