Query 024918
Match_columns 260
No_of_seqs 160 out of 1081
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q8f_A Pyrimidine nucleoside h 100.0 3E-69 1E-73 492.3 23.1 239 19-260 3-241 (313)
2 3t8j_A Purine nucleosidase, (I 100.0 2.3E-69 7.7E-74 492.5 22.1 239 19-260 1-239 (311)
3 1yoe_A Hypothetical protein YB 100.0 7.3E-69 2.5E-73 491.4 23.4 243 16-260 10-253 (322)
4 2mas_A Inosine-uridine nucleos 100.0 8.4E-69 2.9E-73 489.5 23.5 239 20-260 2-242 (314)
5 3t8i_A Purine nucleosidase, (I 100.0 2E-67 6.9E-72 478.3 20.8 238 19-260 1-239 (306)
6 3fz0_A Nucleoside hydrolase, p 100.0 4.1E-66 1.4E-70 478.4 20.1 243 15-260 2-284 (360)
7 2c40_A Inosine-uridine preferr 100.0 4E-63 1.4E-67 451.6 14.9 239 19-260 1-248 (312)
8 3epw_A IAG-nucleoside hydrolas 100.0 8.6E-62 3E-66 447.2 7.6 241 16-260 10-273 (338)
9 2yhg_A SDE_182CT, cellulose-bi 99.3 9.8E-12 3.3E-16 116.6 13.0 142 7-171 10-188 (437)
10 2lqo_A Putative glutaredoxin R 32.5 74 0.0025 22.4 4.9 42 180-222 30-76 (92)
11 3k32_A Uncharacterized protein 32.4 78 0.0027 25.5 5.7 53 18-74 5-57 (203)
12 2yxb_A Coenzyme B12-dependent 30.4 71 0.0024 24.9 5.0 40 43-84 68-107 (161)
13 3bl5_A Queuosine biosynthesis 27.7 1.7E+02 0.0058 23.1 7.0 55 19-75 3-57 (219)
14 3syl_A Protein CBBX; photosynt 26.3 89 0.0031 26.1 5.3 50 119-168 152-201 (309)
15 1ni5_A Putative cell cycle pro 26.2 1.7E+02 0.0058 26.6 7.4 59 19-81 13-77 (433)
16 2der_A TRNA-specific 2-thiouri 25.1 2.7E+02 0.0093 24.9 8.5 56 18-74 16-78 (380)
17 1ccw_A Protein (glutamate muta 24.3 49 0.0017 25.1 2.9 56 24-84 37-92 (137)
18 3k9g_A PF-32 protein; ssgcid, 23.8 1.7E+02 0.0057 23.9 6.4 55 20-80 146-200 (267)
19 3sy1_A UPF0001 protein YGGS; e 22.3 3E+02 0.01 22.9 7.7 41 17-57 121-171 (245)
20 2obn_A Hypothetical protein; s 21.5 2.8E+02 0.0095 24.7 7.7 60 19-81 254-332 (349)
21 3auf_A Glycinamide ribonucleot 20.9 2.2E+02 0.0077 23.5 6.6 47 7-53 10-58 (229)
22 2hma_A Probable tRNA (5-methyl 20.9 2.4E+02 0.0082 25.1 7.2 55 19-74 9-70 (376)
23 3a2k_A TRNA(Ile)-lysidine synt 20.5 1.4E+02 0.0047 27.5 5.6 59 19-81 18-82 (464)
No 1
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=100.00 E-value=3e-69 Score=492.30 Aligned_cols=239 Identities=32% Similarity=0.595 Sum_probs=227.6
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (260)
++|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+. ||.+|||++|+.+||.++. ..+++
T Consensus 3 ~~~vIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~-g~~dIPV~~Ga~~pl~~~~-~~a~~ 80 (313)
T 1q8f_A 3 KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQK-LEINVPVYAGMPQPIMRQQ-IVADN 80 (313)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHH-TTCCCCEEECCSSCSSSCC-CCCHH
T ss_pred CceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCCCHHHHHHHHHHHHHc-CCCCCCEEeCCCccccCCC-CCccc
Confidence 579999999999999999999999999999999999999999999999999999 9999999999999998764 45667
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCC
Q 024918 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~ 178 (260)
+||++||++..+|++...+...+|+++|+++++++|++||||++|||||||+||+++|++.+|||+||+|||++.. ||+
T Consensus 81 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~~-GN~ 159 (313)
T 1q8f_A 81 IHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGT-GNF 159 (313)
T ss_dssp HHCTTSSCSCCCCCCCCCCCSSCHHHHHHHHHHHSCSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSSC-CSS
T ss_pred cCCCcCCCCCCCCCCccCCCCCcHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHCHHHHHhCCEEEEECCCCCC-CCC
Confidence 8999999999998887666778999999999999999999999999999999999999999999999999999975 999
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 024918 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (260)
Q Consensus 179 ~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (260)
+|.+|||||+||+||++||+|++|++++|||+|+++.+++++++++.+.+++.++|+.+++++|.+++++.+|..|+++|
T Consensus 160 tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lh 239 (313)
T 1q8f_A 160 TPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVH 239 (313)
T ss_dssp SSSCCHHHHTCHHHHHHHHTSCSCEEEECHHHHGGGEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCSSEECT
T ss_pred CchhHHhhccCHHHHHHHHhCCCCEEEeChhhhhcccCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCcCCCccc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999887889999999
Q ss_pred CC
Q 024918 259 KS 260 (260)
Q Consensus 259 d~ 260 (260)
|+
T Consensus 240 D~ 241 (313)
T 1q8f_A 240 DA 241 (313)
T ss_dssp TH
T ss_pred hH
Confidence 95
No 2
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-69 Score=492.47 Aligned_cols=239 Identities=32% Similarity=0.554 Sum_probs=228.1
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (260)
++|||||||+|+||++||+|| .+|++||+|||+++||++.+++++|++++|+.+|+ +||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiDtD~G~DDa~Al~~a-~~p~iel~gIttv~GN~~~~~~~~Na~~ll~~~g~-diPV~~Ga~~Pl~~~~-~~a~~ 77 (311)
T 3t8j_A 1 MRHFIIDCDTAEDDVLSLYLL-LKNNIDVVAVTIVEGNISYEQEVKNALWALEQVNR-EIPVYPGANKPLLKNY-ITVEK 77 (311)
T ss_dssp CCEEEEEECCSHHHHHHHHHH-HHTTCEEEEEEECSSSSCHHHHHHHHHHHHHHTTC-CCCEEECCSSCSSSCC-CCCHH
T ss_pred CceEEEECCCChHHHHHHHHH-cCCCCEEEEEEEccCCCCHHHHHHHHHHHHHHcCC-CCCEEECCCCCCCCCC-ccchh
Confidence 479999999999999999999 78999999999999999999999999999999999 9999999999999864 46778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCC
Q 024918 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~ 178 (260)
+||++|||+..+|++...+..++|+++|+++++++|++||||++|||||||+|++++|++.+|||+||+|||++...||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~~~~GN~ 157 (311)
T 3t8j_A 78 VHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNI 157 (311)
T ss_dssp HHCTTSSSSCCCCCSSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCTTHHHHEEEEEEECCCTTSCCSS
T ss_pred hcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHChHHHhhcCEEEEcCCcccCCCCC
Confidence 99999999999988777777899999999999999999999999999999999999999999999999999998888999
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccCC
Q 024918 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (260)
Q Consensus 179 ~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (260)
+|.+|||||+|||||++||+||+|++++|||+|++..++++++++|++.+++.++|+.+++++|.+|+++.+|..|+++|
T Consensus 158 tp~aEfN~~~DPeAA~~V~~sg~~i~~v~ldvt~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lh 237 (311)
T 3t8j_A 158 TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHP 237 (311)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHTTSCBCHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHTSCCSSBCCH
T ss_pred CchhhhccccCHHHHHHHHhCCCCEEEecccccccccCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcCCCCCcCc
Confidence 99999999999999999999999999999999988889999999999989999999999999999998888999999999
Q ss_pred CC
Q 024918 259 KS 260 (260)
Q Consensus 259 d~ 260 (260)
|+
T Consensus 238 D~ 239 (311)
T 3t8j_A 238 DA 239 (311)
T ss_dssp HH
T ss_pred CH
Confidence 94
No 3
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=100.00 E-value=7.3e-69 Score=491.44 Aligned_cols=243 Identities=31% Similarity=0.540 Sum_probs=222.4
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCc
Q 024918 16 STNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV 95 (260)
Q Consensus 16 ~~~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~ 95 (260)
++..+|||||||+|+||++||+|||.+|++||+|||+++||++.+++++|++++|+++||.+|||++|+.+||.++. ..
T Consensus 10 ~~~~~~viiD~D~GiDDa~AL~~al~~p~i~l~gIttv~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~Pl~~~~-~~ 88 (322)
T 1yoe_A 10 HGSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVKPLMREL-II 88 (322)
T ss_dssp -CCCEEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCSSSCC-CC
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCCEEeCCCccccCCC-cc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999998764 46
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCC
Q 024918 96 AEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (260)
Q Consensus 96 ~~~~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~ 175 (260)
++++||++||++..+|++...+...+|+++|+++++++|++||||++|||||||+||+++|++.+|||+||+|||++. .
T Consensus 89 a~~~HG~~Glg~~~~p~~~~~~~~~~Av~~i~~~l~~~p~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~-~ 167 (322)
T 1yoe_A 89 ADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMG-L 167 (322)
T ss_dssp C-----CCSSCSSCCCCCSSCCCSSCHHHHHHHHHHHCSSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSS-C
T ss_pred ccccCCCCCCCCcCCCCCcCCCCcchHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHChHHHhhCCEEEEeCCCCC-C
Confidence 778999999999999988777778999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hhccCCCc
Q 024918 176 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWH-VKSDGVHG 254 (260)
Q Consensus 176 Gn~~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 254 (260)
||++|.+|||||+||+||++||+|++|++++|||+|+++.++++++++|++.+++.++|+.+++++|.+++ ++.+|..|
T Consensus 168 GN~tp~AEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 247 (322)
T 1yoe_A 168 GNWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVG 247 (322)
T ss_dssp CSSSSSCCHHHHHCHHHHHHHHTSSSCEEEECHHHHTTSEECHHHHHHHHHHCSHHHHHHHHHHHHHHC-----CCCCSS
T ss_pred CCCCcccHhhcccCHHHHHHHHhCCCCEEEECccccccccCCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999998854 45678899
Q ss_pred ccCCCC
Q 024918 255 NFSFKS 260 (260)
Q Consensus 255 ~~~~d~ 260 (260)
+++||+
T Consensus 248 ~~lhD~ 253 (322)
T 1yoe_A 248 APLHDP 253 (322)
T ss_dssp EECCTH
T ss_pred CccccH
Confidence 999995
No 4
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=100.00 E-value=8.4e-69 Score=489.55 Aligned_cols=239 Identities=31% Similarity=0.537 Sum_probs=227.4
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccc
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 99 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~~ 99 (260)
+|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+.+||.+|||++|+.+||.++. ..++++
T Consensus 2 ~~vIiDtD~GiDDa~AL~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~a~~~ 80 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKI-MTAGHI 80 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCC-CCCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEeCCCcccCCCC-CCcccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998764 356788
Q ss_pred cCCCCCCCCCCCCCCCC-CCCccHHHHHHHHHHc-CCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCC
Q 024918 100 HGSDGMGNISLTPPKAK-KCDKNASEFLVDKVSE-YPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (260)
Q Consensus 100 hg~~Gl~~~~~~~~~~~-~~~~~a~~~l~~~l~~-~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn 177 (260)
||++||++..+|++... +...+|+++|++++++ +|++||||++|||||||+||+++|++.+|||+||+|||++ ..||
T Consensus 81 hG~~Glg~~~~p~~~~~~~~~~~A~~~i~~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN 159 (314)
T 2mas_A 81 HGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGY-HEGN 159 (314)
T ss_dssp HCSSSSTTCCCCSSCSSCBCSSCHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCS-SCCS
T ss_pred CCCCCCCCCCCCCccccccCCccHHHHHHHHHHhhCCCCEEEEEeccHHHHHHHHHHChhHHhhCCEEEEeCCcc-cCCC
Confidence 99999999989887766 6678999999999999 8999999999999999999999999999999999999999 4699
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccC
Q 024918 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (260)
Q Consensus 178 ~~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (260)
++|.+|||||+||+||++||+|++|++++|||+|+++.++++++++|++.+++.++|+.+++++|.+++++.+|+.|+++
T Consensus 160 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 239 (314)
T 2mas_A 160 ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAV 239 (314)
T ss_dssp SSSSCCHHHHTCHHHHHHHHHSSSCEEEECHHHHTTCEECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSSEEC
T ss_pred CCchhHHHhhcCHHHHHHHHhCCCCEEEeChhhhcccccCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999988889999999
Q ss_pred CCC
Q 024918 258 FKS 260 (260)
Q Consensus 258 ~d~ 260 (260)
||+
T Consensus 240 hD~ 242 (314)
T 2mas_A 240 HDP 242 (314)
T ss_dssp CHH
T ss_pred CcH
Confidence 994
No 5
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-67 Score=478.26 Aligned_cols=238 Identities=34% Similarity=0.548 Sum_probs=225.3
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (260)
++|||||||+|+||++||++++ +++||+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||..+. ..+++
T Consensus 1 M~kvIiD~D~G~DDa~Allla~--~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 77 (306)
T 3t8i_A 1 MRKVIVDSDTATDDTIAILLAS--RFFQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPVYLGSQRPILGNW-RTVEE 77 (306)
T ss_dssp CCEEEEEECCSTHHHHHHHHHH--HHSEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCTTCCC-CCCHH
T ss_pred CcEEEEECCCChHHHHHHHHhC--CCCEEEEEEEccCCCCHHHHHHHHHHHHHhcCCCCCcEEEcCCccCCCCC-ccccc
Confidence 4799999999999999997665 48999999999999999999999999999999999999999999998864 45778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCCCCC
Q 024918 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (260)
Q Consensus 99 ~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~Gn~ 178 (260)
+||++|||+..+|++...+..++|+++|+++++++|++|||+++|||||||+||+++|++.+|||+||+|||++ ..||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN~ 156 (306)
T 3t8i_A 78 VHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAF-SKGNT 156 (306)
T ss_dssp HHCTTSSTTCCCCCCSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCGGGGGTCCEEEEECCCS-SCCSS
T ss_pred ccCCCCCCccCCCCccCCcCCccHHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHChhHHhhcCEEEEecCCC-CCCCC
Confidence 99999999999988877777889999999999999999999999999999999999999999999999999996 57999
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCcEEEEcCCcccee-ecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccCCCcccC
Q 024918 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQV-KLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (260)
Q Consensus 179 ~~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (260)
+|.+|||||+|||||++||+|++|++++|||+|+++ .++++++++|++.+++.++|+.+++++|.+|+++.+|..|+++
T Consensus 157 tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~~ 236 (306)
T 3t8i_A 157 TPIAEFNFWVDPEAAKIVLDAGFDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISGSIH 236 (306)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHHHHSEEEHHHHHHHHHHCCHHHHHHHHHTHHHHHHHHHHHSSSEEEC
T ss_pred CCchhhccccCHHHHHHHHhCCCCceEecchhccccccCCHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcCCCCCcC
Confidence 999999999999999999999999999999999999 9999999999998999999999999999999999899999999
Q ss_pred CCC
Q 024918 258 FKS 260 (260)
Q Consensus 258 ~d~ 260 (260)
||+
T Consensus 237 hD~ 239 (306)
T 3t8i_A 237 PDS 239 (306)
T ss_dssp HHH
T ss_pred CCH
Confidence 994
No 6
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=100.00 E-value=4.1e-66 Score=478.41 Aligned_cols=243 Identities=28% Similarity=0.418 Sum_probs=215.3
Q ss_pred CCCCCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCC
Q 024918 15 SSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPR 94 (260)
Q Consensus 15 ~~~~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~ 94 (260)
+.+.++|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+++|+ +|||+.|+..||..+ .
T Consensus 2 ~~m~~~kvIiD~D~G~DDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~-dIPV~~Ga~~pl~~~--~ 78 (360)
T 3fz0_A 2 SHMVHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLYDA-DIPFFRGAEGPLVGE--R 78 (360)
T ss_dssp ---CEEEEEEEECCCHHHHHHHHHHHTSTTEEEEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCCEEECCSSCSSSS--C
T ss_pred CCCCCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCCHHHHHHHHHHHHHHcCC-CCCEEEcCCCCCCCC--c
Confidence 3456789999999999999999999999999999999999999999999999999999999 999999999999986 4
Q ss_pred ccccc--cCCCCCCCCCCCCCCC--CCCCccHHHHHHHHHHcC-CCc---eEEEEecchhHHHHHHhhCcchhhcc----
Q 024918 95 VAEFA--HGSDGMGNISLTPPKA--KKCDKNASEFLVDKVSEY-PGE---VSILALGPLTNLALAIKRDSSFASKV---- 162 (260)
Q Consensus 95 ~~~~~--hg~~Gl~~~~~~~~~~--~~~~~~a~~~l~~~l~~~-p~~---vtilaiGpLTNiA~al~~~P~l~~ki---- 162 (260)
.++++ ||++|||+..+|++.. ....++|+++|+++++++ |++ ||||++|||||||+||+++|++.++|
T Consensus 79 ~~~~~~~hG~~Glg~~~~p~~~~~~~~~~~~A~~~i~~~~~~~~p~~~~~vtiva~GPLTNlA~al~~~P~~~~~ig~~k 158 (360)
T 3fz0_A 79 ETVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDT 158 (360)
T ss_dssp CSCCCCTTCTTSSCSCCCCCCSHHHHSCCSCHHHHHHHHHHHCCCCSSEEEEEEECSCSHHHHHHHHHCGGGGGGSSCSS
T ss_pred chHHHHhhcccCcCcccCCCCccccccCCccHHHHHHHHHHhcCCCCCceEEEEEecChHHHHHHHHhChHHHhhhcccc
Confidence 56778 9999999988877542 245689999999999999 888 99999999999999999999999999
Q ss_pred -CeEEEecCCCCCCCCCCCCCCCCCCCCHHHHHHHHhc-CC--cEEEEcCCccceeecCHHHHHHHHhcCCh-HH-----
Q 024918 163 -KNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS-GA--NIAVVGINITTQVKLTDADFLELRQSKGR-YV----- 232 (260)
Q Consensus 163 -~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~s-g~--~i~~vpldvt~~~~~~~~~~~~l~~~~~~-~~----- 232 (260)
|+||+|||++...||++|.+|||||+|||||++||+| |+ |++|+|||+|+++.++++++++|.+.+++ .+
T Consensus 159 v~~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~~V~~s~g~~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T 3fz0_A 159 IPGIVIMNGTSESKGNSNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRESTPNGRVAVN 238 (360)
T ss_dssp SCSEEEECCCSSCCCSSSSSCCHHHHHCHHHHHHHHHCSCCSSCEEEECHHHHHTSCEEHHHHHHHTTC-----------
T ss_pred CcEEEEECCCccCCCCCCCCcccccCcCHHHHHHHHhCcCCCCCeEEECccceeeeecCHHHHHHHHhcCCCcccccccc
Confidence 9999999999888999999999999999999999999 55 99999999999999999999999876665 66
Q ss_pred -----HHHHHHHHHHHHHHhhc-------------cCCCcccCCCC
Q 024918 233 -----QLLGDMCKFYRDWHVKS-------------DGVHGNFSFKS 260 (260)
Q Consensus 233 -----~~~~~~~~~~~~~~~~~-------------~~~~g~~~~d~ 260 (260)
+|+.+++++|.+|++.. .|+.+|++||+
T Consensus 239 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~g~~~~~lHD~ 284 (360)
T 3fz0_A 239 QNKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVTCVVPDA 284 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHHC------------------CEECCHHH
T ss_pred cchHHHHHHHHHHHHHHHHhhhccccccccccccccCcCCCccccH
Confidence 99999999999987643 46678999995
No 7
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=100.00 E-value=4e-63 Score=451.62 Aligned_cols=239 Identities=22% Similarity=0.283 Sum_probs=201.2
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga~~pl~~~~~~~~~~ 98 (260)
++|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+++||++|||++|+.+|+.... ....
T Consensus 1 m~kvIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~--~~~~ 78 (312)
T 2c40_A 1 MKKVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNSRGKNPFP--KDWR 78 (312)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHCCSCCCEEECCCCCSSCCC--HHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCcHHHHHHHHHHHHHHcCCCCCCEecCCCccccCCC--cccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999996421 1223
Q ss_pred ccCC--CCCCCCCCCCC-CCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEecCCCCCC
Q 024918 99 AHGS--DGMGNISLTPP-KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (260)
Q Consensus 99 ~hg~--~Gl~~~~~~~~-~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviMGG~~~~~ 175 (260)
.||. +|++....+.+ .......+|+++|+++++++|++||||++|||||||+||+++|++.+|||+||+|||++...
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~~~ 158 (312)
T 2c40_A 79 MHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTA 158 (312)
T ss_dssp THHHHHHTCHHHHTTSCCCSCBCSSCHHHHHHHHHHHSSSCEEEEESSCSHHHHHHHHHCGGGGGGEEEEEEECCCCSSC
T ss_pred cccccCCCcccCCCCCcccCCCCCccHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChhHHhhcCEEEEeCCcccCC
Confidence 4554 55542223322 22334688999999999999999999999999999999999999999999999999999878
Q ss_pred CCCC-----CCCCCCCCCCHHHHHHHHhcCCcEEEEcCCccceeecCHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhhc
Q 024918 176 GNVN-----PAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQLLGDMCKFYRDWHVKS 249 (260)
Q Consensus 176 Gn~~-----~~aE~N~~~DP~AA~~Vl~sg~~i~~vpldvt~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (260)
||++ |.+|||||+|||||++||+|++|++++|||+|+++.++++++++|.+.+ ++.++|+.++++.|..+ ...
T Consensus 159 GN~t~p~~~p~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (312)
T 2c40_A 159 GNVHEPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQWAKERKYIGIDFLGQCYAIVPPL-VHF 237 (312)
T ss_dssp CSCCCTTCCSCCCHHHHHCHHHHHHHHHSSCCEEEECGGGGTTCBCCHHHHHHHHHTTTSHHHHHHHHHHHTSCCC----
T ss_pred CCccCCCCCCcchhhhccCHHHHHHHHcCCCCEEEEccccccceecCHHHHHHHHhcCCChHHHHHHHHHHhhhhh-hhh
Confidence 9997 8999999999999999999999999999999999999999999998865 58889888877654111 111
Q ss_pred cCCCcccCCCC
Q 024918 250 DGVHGNFSFKS 260 (260)
Q Consensus 250 ~~~~g~~~~d~ 260 (260)
.+..|+++||+
T Consensus 238 ~~~~~~~lhD~ 248 (312)
T 2c40_A 238 AKNSTYYLWDV 248 (312)
T ss_dssp -----CBCHHH
T ss_pred cccCCCcccCH
Confidence 13468899984
No 8
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=100.00 E-value=8.6e-62 Score=447.17 Aligned_cols=241 Identities=22% Similarity=0.313 Sum_probs=205.5
Q ss_pred CCCCceEEEecCCCchHHHHHHHHHcCCC-CeEEEEEEecCCCChHHHHHHHHHHHHHhCCCC----CCcccCCCCCCCC
Q 024918 16 STNPAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCPG----VPVAEGSPEPLKG 90 (260)
Q Consensus 16 ~~~~~~viiDtD~g~DD~~AL~~al~~p~-v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~----IPV~~Ga~~pl~~ 90 (260)
++..+|||||||+|+||++||+|||++|+ +||+||||++||++.+++++|++++|+.+||.+ ||||+|+.+|+..
T Consensus 10 ~~~~~~vilD~DpGiDDa~AL~~al~~p~~iel~gITtv~GN~~~~~~~~Nal~lL~~~g~~d~~~~IPV~~Ga~~pl~~ 89 (338)
T 3epw_A 10 HGSAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNP 89 (338)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHCTTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCSSC
T ss_pred cCccceEEEECCCChHHHHHHHHHHhCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCCccceEeCCCCCCCC
Confidence 35678999999999999999999999999 999999999999999999999999999999988 9999999999965
Q ss_pred CCCCccccccCCCCCCCC-CCCCC---------CCCCCCccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhC-cchh
Q 024918 91 GKPRVAEFAHGSDGMGNI-SLTPP---------KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRD-SSFA 159 (260)
Q Consensus 91 ~~~~~~~~~hg~~Gl~~~-~~~~~---------~~~~~~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~-P~l~ 159 (260)
.. .....||. |+++. .++.| .....+.+|+++|+++++++|++||||++|||||||+||+++ |++.
T Consensus 90 ~~--~~~~~~~~-~~~~~~~~~~~g~~~l~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~gP~~~ 166 (338)
T 3epw_A 90 FP--KEWRCLAK-NMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFT 166 (338)
T ss_dssp CC--HHHHTHHH-HHHTCGGGCCHHHHHHHHHHHHHHHTSBHHHHHHHHHHHCSSCEEEEECSCTHHHHHHHHHHTHHHH
T ss_pred CC--CcceeccC-cCCCCccCCcccccccCCCCCCccCCccHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHcCHHHH
Confidence 31 11224543 22221 12221 122346799999999999999999999999999999999999 9999
Q ss_pred hccCeEEEecCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHh-cCCcEEEEcCCccceeecCHHHHHHHHhcC-ChHH
Q 024918 160 SKVKNIVVLGGAFFALGNVN-----PAAEANIYGDPEAADVVFT-SGANIAVVGINITTQVKLTDADFLELRQSK-GRYV 232 (260)
Q Consensus 160 ~ki~~iviMGG~~~~~Gn~~-----~~aE~N~~~DP~AA~~Vl~-sg~~i~~vpldvt~~~~~~~~~~~~l~~~~-~~~~ 232 (260)
+|||+||+|||++..+||++ |.+|||||+||+||++||+ |++|++|+|||+|+++.++++++++|++.+ ++.+
T Consensus 167 ~~i~~iviMGG~~~~~GN~t~~~~~~~aEfN~~~DPeAA~~V~~~sg~~i~~vpLdvT~~~~~t~~~~~~l~~~~~~~~~ 246 (338)
T 3epw_A 167 SKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLS 246 (338)
T ss_dssp TTEEEEEEECCCSSSCCSCCCTTSCSCCCHHHHHSHHHHHHHHTCTTCCEEEECHHHHTTCBCCHHHHHGGGGGTTSHHH
T ss_pred HhCCEEEEecCCCCCCCCccccCCCCcchhccccCHHHHHHHHhhcCCCEEEeCcccccCccCCHHHHHHHHhhCCCHHH
Confidence 99999999999998789998 7999999999999999999 999999999999999999999999998754 5899
Q ss_pred HHHHHHHHHHHHHHhhccCCCcccCCCC
Q 024918 233 QLLGDMCKFYRDWHVKSDGVHGNFSFKS 260 (260)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~g~~~~d~ 260 (260)
+|+.+++.+|..|+.. .+..|+++||+
T Consensus 247 ~~~~~~~~~~~~~~~~-~~~~g~~lhDp 273 (338)
T 3epw_A 247 ILVGTMWAMCTHCELL-RDGDGYYAWDA 273 (338)
T ss_dssp HHHHHHHHTTTTHHHH-STTCCCBCHHH
T ss_pred HHHHHHHHHHHHHHhh-ccCCCCcCchH
Confidence 9999988877544332 35578999994
No 9
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=99.33 E-value=9.8e-12 Score=116.63 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=90.9
Q ss_pred CCCCccccCC------CCCceEEEecCCC--chHHHHHHHHHcCC-CCeEEEEEEecC----C-CC---hHHHHHHHHHH
Q 024918 7 HGSGVVLGSS------TNPAKLIIDTDPG--IDDSMTILMAFQTP-ELEILGLTTIFG----N-VT---TEDATRNALTL 69 (260)
Q Consensus 7 ~~~~~~~~~~------~~~~~viiDtD~g--~DD~~AL~~al~~p-~v~v~gIttv~G----n-~~---~~~~~~na~~l 69 (260)
|.||.+-... ..+.+|||+||++ +||.++|+.+|..+ +++|.||+.++. + .. .+.....-.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~k~RviI~TDi~nEpDD~~Slvr~Llysn~~dieGivat~s~~~~~~~~~~~i~~ii~aY~~v 89 (437)
T 2yhg_A 10 HSSGLVPRGSHMARGEGGRYRVIHTTDMGADPDDEQSLVRQLVMANEYDLEGIITTTGCWKKSTSNTAYVDRILNAYSQA 89 (437)
T ss_dssp -----------------CCCEEEEEECTTSCTHHHHHHHHHHHTGGGSEEEEEEECCBTTBCCCCCCHHHHHHHHHHHHH
T ss_pred ccCCcccccccccccccCCceEEEeCCCCCCCccHHHHHHHHhCcccceEeEEEEecccccCCCCCHHHHHHHHHHHHHH
Confidence 4566654322 2467999999965 99999999999875 699999987643 2 11 12111222344
Q ss_pred HHHhCCC--CCCc--------ccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCceE
Q 024918 70 CEMAGCP--GVPV--------AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVS 138 (260)
Q Consensus 70 l~~~g~~--~IPV--------~~Ga~~pl~~~~~~~~~~~hg~~Gl~~~~~~~~~~~~~~~~a~~~l~~~l~~~-p~~vt 138 (260)
+..++.. ..|. ..|+... |+... ....+.+|.++|++.+++. +.||.
T Consensus 90 ~~nL~~h~~~yP~~~~Lrs~v~~G~~~y----------------gm~~~------g~~~~s~gs~~Ii~~~~~~d~rPL~ 147 (437)
T 2yhg_A 90 YPNLSKHAEGFPTPAYLDSINVMGQRGY----------------GMGDV------GSGKDSAGSNLIIAAVDKDDPRPVW 147 (437)
T ss_dssp HHHHTTTSTTCCCHHHHHHTEEECCSSC----------------GGGGC------STTCCCHHHHHHHHHHHSSCSSCEE
T ss_pred HHHHHhhcCCCCCHHHhhhhhccCCccc----------------CCCcC------CCCCCChHHHHHHHHHhCCCCCceE
Confidence 4444432 3443 3333221 11111 1123478999999998764 67999
Q ss_pred EEEecchhHHHHHHhhC---------cchhhccCeEEEecCC
Q 024918 139 ILALGPLTNLALAIKRD---------SSFASKVKNIVVLGGA 171 (260)
Q Consensus 139 ilaiGpLTNiA~al~~~---------P~l~~ki~~iviMGG~ 171 (260)
|++.|.+|+||.||.+. |+|.+|| +||+.||-
T Consensus 148 i~~wGG~n~lAqAL~~~~~~~~~~~~~~i~~kl-rvy~Ig~q 188 (437)
T 2yhg_A 148 ATCWGGCNTIAQAVWKVQNTRSQAQLDAFISKL-RVYDILGQ 188 (437)
T ss_dssp EEESSCSHHHHHHHHHHHHHSCHHHHHHHHHTE-EEEEESCC
T ss_pred EEEecCHhHHHHHHHHhhhhcCcchhHHHhhcE-EEEEecCc
Confidence 99999999999999998 8999999 68888874
No 10
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=32.53 E-value=74 Score=22.42 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=29.0
Q ss_pred CCCCCCCCCCHHHHHHHHhc-----CCcEEEEcCCccceeecCHHHHH
Q 024918 180 PAAEANIYGDPEAADVVFTS-----GANIAVVGINITTQVKLTDADFL 222 (260)
Q Consensus 180 ~~aE~N~~~DP~AA~~Vl~s-----g~~i~~vpldvt~~~~~~~~~~~ 222 (260)
+..|.|+..||+|.+.+.+. .+|.++++ |=+.-+-++.++++
T Consensus 30 ~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~-Dg~~l~~~~~~el~ 76 (92)
T 2lqo_A 30 AYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFA-DGSTLTNPSADEVK 76 (92)
T ss_dssp CCEEEETTTCHHHHHHHHHHSSSSSCSCEEEET-TSCEEESCCHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEe-CCEEEeCCCHHHHH
Confidence 45789999999999999762 37888885 32233345555554
No 11
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=32.44 E-value=78 Score=25.50 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=37.6
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhC
Q 024918 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (260)
Q Consensus 18 ~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g 74 (260)
++.||++=.=+|+|=.+++.++ ..-..++.+++..+|... ....+.++.+.+|
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll-~~~g~~v~~~~v~~~~~~---~~~~~~~~a~~lg 57 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVIL-KKLGYNPHLITINFGVIP---SYKLAEETAKILG 57 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHH-HHTTEEEEEEEEECSSSC---TTHHHHHHHHHHT
T ss_pred cCCeEEEEEECcHHHHHHHHHH-HHcCCCeEEEEEeCCCch---HHHHHHHHHHHhC
Confidence 3568999999999766555444 434589999998888654 2467777888876
No 12
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.37 E-value=71 Score=24.94 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=27.2
Q ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCC
Q 024918 43 PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGS 84 (260)
Q Consensus 43 p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga 84 (260)
.+.+++|+++..+. .........+.|+..|..++||..|-
T Consensus 68 ~~~diV~lS~~~~~--~~~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 68 EDVDVIGVSILNGA--HLHLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp TTCSEEEEEESSSC--HHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred cCCCEEEEEeechh--hHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 36789999876542 33445556666666776679998875
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=27.67 E-value=1.7e+02 Score=23.12 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=39.1
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCC
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~ 75 (260)
+.+|++--=.|+|=.+.+.++... ..++.+++..+|.... .....+.++.+.+|.
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~-~e~~~a~~~a~~lgi 57 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHS-QEVEVAKSIAEKLGV 57 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTC-HHHHHHHHHHHTTCC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCH-HHHHHHHHHHHHhCC
Confidence 457888888999766655555443 3789999988886443 346677888887763
No 14
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=26.32 E-value=89 Score=26.13 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=39.5
Q ss_pred CccHHHHHHHHHHcCCCceEEEEecchhHHHHHHhhCcchhhccCeEEEe
Q 024918 119 DKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVL 168 (260)
Q Consensus 119 ~~~a~~~l~~~l~~~p~~vtilaiGpLTNiA~al~~~P~l~~ki~~iviM 168 (260)
...+...|.+.+...+..+.+++++.-..+...++.+|.+.+++..++-+
T Consensus 152 ~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~ 201 (309)
T 3syl_A 152 GQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEF 201 (309)
T ss_dssp THHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEc
Confidence 45677788888888777889999988777778888899999998655543
No 15
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=26.17 E-value=1.7e+02 Score=26.61 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=41.3
Q ss_pred CceEEEecCCCchHHHHHHHHHcC-----CCCeEEEEEEecCCC-ChHHHHHHHHHHHHHhCCCCCCcc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQT-----PELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVA 81 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~-----p~v~v~gIttv~Gn~-~~~~~~~na~~ll~~~g~~~IPV~ 81 (260)
..+|++=.=+|.| .++|++++.. ..+++.++++.+|-. ..+.-...+.++++.+| ||.+
T Consensus 13 ~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lg---i~~~ 77 (433)
T 1ni5_A 13 SRQILVAFSGGLD-STVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ---VPLV 77 (433)
T ss_dssp CSEEEEECCSBHH-HHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTT---CCEE
T ss_pred CCEEEEEEcchHH-HHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcC---CcEE
Confidence 4578888888885 6666666653 679999999888854 34445666777777765 5654
No 16
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=25.10 E-value=2.7e+02 Score=24.86 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=41.1
Q ss_pred CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCC-------hHHHHHHHHHHHHHhC
Q 024918 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-------TEDATRNALTLCEMAG 74 (260)
Q Consensus 18 ~~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~-------~~~~~~na~~ll~~~g 74 (260)
...+|++=.=.|.|=.+++.++... ..+|.||+...+... .......++++.+.+|
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LG 78 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG 78 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcC
Confidence 4568999999999877766665544 699999998765432 3445677888888887
No 17
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.30 E-value=49 Score=25.09 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=34.6
Q ss_pred EecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCcccCC
Q 024918 24 IDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGS 84 (260)
Q Consensus 24 iDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV~~Ga 84 (260)
+-.|.-.++....+.- .+.+++++++..+. .........+.|+..|..++||..|-
T Consensus 37 lG~~~p~e~~v~~a~~---~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 37 IGVLSPQELFIKAAIE---TKADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp EEEEECHHHHHHHHHH---HTCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHh---cCCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4444445555443333 25789999887653 33445566666777776689998774
No 18
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.75 E-value=1.7e+02 Score=23.93 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=29.5
Q ss_pred ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCCc
Q 024918 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 80 (260)
Q Consensus 20 ~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IPV 80 (260)
--|||||-++.++...-++.. .|.+=|.+... ...-..+..+.+.++.++. ++++
T Consensus 146 D~viiD~pp~~~~~~~~~l~~----aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~-~~~~ 200 (267)
T 3k9g_A 146 DYIVIDTNPSLDVTLKNALLC----SDYVIIPMTAE-KWAVESLDLFNFFVRKLNL-FLPI 200 (267)
T ss_dssp SEEEEEECSSCSHHHHHHHTT----CSEEEEEEESC-TTHHHHHHHHHHHHHTTTC-CCCE
T ss_pred CEEEEECcCCccHHHHHHHHH----CCeEEEEeCCC-hHHHHHHHHHHHHHHHHhc-cCCE
Confidence 469999999987654333332 24443333333 3333445555556665553 4454
No 19
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=22.33 E-value=3e+02 Score=22.93 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCCceEEEecCCC---------chHHHHHHHHHc-CCCCeEEEEEEecCCC
Q 024918 17 TNPAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNV 57 (260)
Q Consensus 17 ~~~~~viiDtD~g---------~DD~~AL~~al~-~p~v~v~gIttv~Gn~ 57 (260)
..+.+|+|--|+| .+|+.+++-.+. .|.+++.|+-|.....
T Consensus 121 ~~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~~~~~l~l~Glmt~~~~~ 171 (245)
T 3sy1_A 121 LPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPE 171 (245)
T ss_dssp SCCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHTTCTTEEEEEEECCCCCC
T ss_pred CCCceEEEEEECCCCcCCcCCCHHHHHHHHHHHHcCCCCeEEEEEEeCCCC
Confidence 3456788666654 478877766554 6899999997655444
No 20
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=21.46 E-value=2.8e+02 Score=24.69 Aligned_cols=60 Identities=12% Similarity=0.254 Sum_probs=40.8
Q ss_pred CceEEEecCCC---c-----------hHHHHHHHHHc---C--CCCeEEEEEEecCCCChHHHHHHHHHHHHHhCCCCCC
Q 024918 19 PAKLIIDTDPG---I-----------DDSMTILMAFQ---T--PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVP 79 (260)
Q Consensus 19 ~~~viiDtD~g---~-----------DD~~AL~~al~---~--p~v~v~gIttv~Gn~~~~~~~~na~~ll~~~g~~~IP 79 (260)
+..||+=.+++ + .+.+.+..++. + +.++|+||+...-+...+....|...+-+.+| +|
T Consensus 254 p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~g---lP 330 (349)
T 2obn_A 254 PTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETG---LP 330 (349)
T ss_dssp CSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHC---SC
T ss_pred CCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHC---CC
Confidence 34577777764 3 66676666664 3 78999999987766666665566666667765 66
Q ss_pred cc
Q 024918 80 VA 81 (260)
Q Consensus 80 V~ 81 (260)
|.
T Consensus 331 v~ 332 (349)
T 2obn_A 331 CT 332 (349)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 21
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.93 E-value=2.2e+02 Score=23.54 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CCCCccccCCCCCceEEEecCCCchHHHHHHHHHcCC--CCeEEEEEEe
Q 024918 7 HGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTP--ELEILGLTTI 53 (260)
Q Consensus 7 ~~~~~~~~~~~~~~~viiDtD~g~DD~~AL~~al~~p--~v~v~gIttv 53 (260)
|.||-....+..+.||++=.-....-+.+++-++... ..+|++|.|-
T Consensus 10 ~~~~~~~~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 10 HSSGENLYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp -CCSBSSSCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred ccccccccccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 4566666666667777776555455677888888766 4799999874
No 22
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=20.93 E-value=2.4e+02 Score=25.12 Aligned_cols=55 Identities=15% Similarity=0.357 Sum_probs=40.8
Q ss_pred CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEEecCCC-------ChHHHHHHHHHHHHHhC
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNV-------TTEDATRNALTLCEMAG 74 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~p~v~v~gIttv~Gn~-------~~~~~~~na~~ll~~~g 74 (260)
..+|++=.=.|.|=.+++.++... ..+|.||+...+.- ........++++.+.+|
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lG 70 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIG 70 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhC
Confidence 458999999999766666555544 69999999877632 24456778888888887
No 23
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=20.50 E-value=1.4e+02 Score=27.47 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=40.6
Q ss_pred CceEEEecCCCchHHHHHHHHHcC----CCCeEEEEEEecCCCC--hHHHHHHHHHHHHHhCCCCCCcc
Q 024918 19 PAKLIIDTDPGIDDSMTILMAFQT----PELEILGLTTIFGNVT--TEDATRNALTLCEMAGCPGVPVA 81 (260)
Q Consensus 19 ~~~viiDtD~g~DD~~AL~~al~~----p~v~v~gIttv~Gn~~--~~~~~~na~~ll~~~g~~~IPV~ 81 (260)
..+|++=.-+|.| .++|+++|.. ..+++.+++..+|-.. .+.-...+.++++.+| ||..
T Consensus 18 ~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg---i~~~ 82 (464)
T 3a2k_A 18 GAAVIVGVSGGPD-SLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR---ILCE 82 (464)
T ss_dssp SSBEEEECCSSHH-HHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT---CEEE
T ss_pred CCEEEEEEcCcHH-HHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcC---CcEE
Confidence 4579999999995 6666666553 4689999998888642 3344566777777765 5644
Done!