BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024919
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 274 bits (700), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/239 (56%), Positives = 172/239 (71%), Gaps = 3/239 (1%)
Query: 12 GGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNC 71
G SFD +RN+ L++ P + TGTTIVG+ F NGV++ ADTR+T G IV DKNC
Sbjct: 2 AGLSFDNYQRNNFLAENSHTQPKA-TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNC 60
Query: 72 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ 131
K+H ++P I+C GAGTAADTEAVT ++ S ++LH +T RE RVV+AL +LK HLFKYQ
Sbjct: 61 AKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ 120
Query: 132 GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191
GH+ A L++ GVD TG HL +I+ HGSTD + ++GSGSLAAMAV ES +++ LTKEE
Sbjct: 121 GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 180
Query: 192 ISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPNPRTYISSKGYSFPKKT 249
I L +AI +GI+NDLGSGSNVD+CV+ G D EYLRN+ PN R K Y FP+ T
Sbjct: 181 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGT 238
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 124/195 (63%), Positives = 157/195 (80%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTI G+++++G++LGADTRAT G +V DKNC KIH+++PNIYCCGAGTAADT+ T ++S
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTD 160
S L+LH TGR RVVTA +LK LF+YQG++ AALVLGGVD TGPHL++IYPHGSTD
Sbjct: 61 SNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTD 120
Query: 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
LP+ TMGSGSLAAMAVFE K+R + +EE LV EAI +GIFNDLGSGSN+D+CVI+K
Sbjct: 121 KLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISK 180
Query: 221 GDKEYLRNHQLPNPR 235
++LR +PN +
Sbjct: 181 SKLDFLRPFSVPNKK 195
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 159/195 (81%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTI G+++++G++LGADTRAT G +V DKNC KIH+++PNIYCCGAGTAADT+ T ++S
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTD 160
S L+LH TGR RVVTA +LK LF+Y+G++ AALVLGGVD TGPHL++IYPHGSTD
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTD 120
Query: 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
LP+ TMGSGSLAAMAVFE K+R + +EE +LV EAI +GIFNDLGSGSN+D+CVI+K
Sbjct: 121 KLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISK 180
Query: 221 GDKEYLRNHQLPNPR 235
++LR + +PN +
Sbjct: 181 NKLDFLRPYTVPNKK 195
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/210 (59%), Positives = 157/210 (74%), Gaps = 2/210 (0%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTIVG+ F NGV++ ADTR+T G IV DKNC K+H ++P I+C GAGTAADTEAVT ++
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTD 160
S ++LH +T RE RVV+AL +LK HLFKYQGH+ A L++ GVD TG HL +I+ HGSTD
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTD 120
Query: 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
+ ++GSGSLAAMAV ES +++ LTKEE I L +AI +GI+NDLGSGSNVD+CV+
Sbjct: 121 VGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEI 180
Query: 221 G-DKEYLRNHQLPNPRTYISSKGYSFPKKT 249
G D EYLRN+ PN R K Y FP+ T
Sbjct: 181 GKDAEYLRNYLTPNVREE-KQKSYKFPRGT 209
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 257 bits (656), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/210 (59%), Positives = 157/210 (74%), Gaps = 2/210 (0%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTIVG+ F NGV++ ADTR+T G IV DKNC K+H ++P I+C GAGTAADTEAVT ++
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTD 160
S ++LH +T RE RVV+AL +LK HLFKYQGH+ A L++ GVD TG HL +I+ HGSTD
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTD 120
Query: 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
+ ++GSGSLAAMAV ES +++ LTKEE I L +AI +GI+NDLGSGSNVD+CV+
Sbjct: 121 VGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEI 180
Query: 221 G-DKEYLRNHQLPNPRTYISSKGYSFPKKT 249
G D EYLRN+ PN R K Y FP+ T
Sbjct: 181 GKDAEYLRNYLTPNVREE-KQKSYKFPRGT 209
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 137/193 (70%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTI GL+F++GVILGADTRAT S+V DK+CEKIH++AP IYCCGAG AADTE T M +
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTD 160
S+++LH TGRE RV T +L+ LF+YQGHV A+LV+GGVD GP L+ ++PHGS
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYS 120
Query: 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
LPF +GSG AA+A+ E +++ +T E L+ EAI +GI +DLGSG NVD CVIT
Sbjct: 121 RLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITA 180
Query: 221 GDKEYLRNHQLPN 233
G + R P
Sbjct: 181 GGAKLQRALSTPT 193
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 3/196 (1%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTI+ + F GV+LGAD+R T GS + ++ +K+ + I+CC +G+AADT+AV D V+
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVD-ATGPHLHTIYPHGST 159
QL H V TA +L K ++Y+ + A +++ G D G ++++ G
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219
FA GSGS ++ YREG+TKEE + A+ + D SG + + I
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIA 180
Query: 220 KG--DKEYLRNHQLPN 233
+ +++ L Q+P
Sbjct: 181 ESGVERQVLLGDQIPK 196
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 3/196 (1%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTI+ + F GV+LGAD+R T GS + ++ +K+ + +I+CC +G+AADT+AV D V+
Sbjct: 1 TTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVT 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVD-ATGPHLHTIYPHGST 159
QL H V TA +L K ++Y+ + A +++ G D G ++++ G
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219
FA GSGS ++ YREG+TK+E + A+ + D SG + + I
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQ 180
Query: 220 KG--DKEYLRNHQLPN 233
+ +++ L Q+P
Sbjct: 181 ESGVERQVLLGDQIPK 196
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 105/188 (55%), Gaps = 2/188 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GT+I+ + F++GVILGAD+R T G+ + ++ +K+ + I+CC +G+AADT+A+ D+V
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 78
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP-HLHTIYPHGS 158
L+L+ G S TA ++ K ++ + ++ A +++ G D ++TI GS
Sbjct: 79 QYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGS 137
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
LP+A GSGS + +RE ++KEE + + ++ I D SG + + V+
Sbjct: 138 VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 197
Query: 219 TKGDKEYL 226
T E L
Sbjct: 198 TAAGVERL 205
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
G +I+ + F++GVILGAD+R T G+ + ++ +K+ + I+CC +G+AADT+A+ D+V
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP-HLHTIYPHGS 158
L+L+ G S TA ++ K ++ + ++ A +++ G D ++TI GS
Sbjct: 69 QYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGS 127
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
LP+A GSGS + +RE ++KEE + + ++ I D SG + + V+
Sbjct: 128 VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 187
Query: 219 TKGDKEYL 226
T E L
Sbjct: 188 TAAGVERL 195
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 104/187 (55%), Gaps = 2/187 (1%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
T+I+ + F++GVILGAD+R T G+ + ++ +K+ + I+CC +G+AADT+A+ D+V
Sbjct: 1 TSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQ 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP-HLHTIYPHGST 159
L+L+ G S TA ++ K ++ + ++ A +++ G D ++TI GS
Sbjct: 61 YHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSV 119
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219
LP+A GSGS + +RE ++KEE + + ++ I D SG + + V+T
Sbjct: 120 HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLT 179
Query: 220 KGDKEYL 226
E L
Sbjct: 180 AAGVERL 186
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 103/186 (55%), Gaps = 2/186 (1%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSS 101
+I+ + F++GVILGAD+R T G+ + ++ +K+ + I+CC +G+AADT+A+ D+V
Sbjct: 2 SIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY 61
Query: 102 QLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP-HLHTIYPHGSTD 160
L+L+ G S TA ++ K ++ + ++ A +++ G D ++TI GS
Sbjct: 62 HLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVH 120
Query: 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK 220
LP+A GSGS + +RE ++KEE + + ++ I D SG + + V+T
Sbjct: 121 KLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTA 180
Query: 221 GDKEYL 226
E L
Sbjct: 181 AGVERL 186
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+TGTT VG+ ++ VI+ + R T + + KN +K+ + AG D + +
Sbjct: 6 ETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVR 65
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHL--FKYQGHVQAALVLGGVDATGPHLHTIYP 155
+ ++L+L+R + TLL + L KY ++ L++GG+D T PH+ +I
Sbjct: 66 YMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYM-VQLLVGGID-TAPHVFSIDA 123
Query: 156 HGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G + +A+ GSGS V ES+Y E +T +EG+ LV AI + D SG +D+
Sbjct: 124 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 183
Query: 216 CVITKGD 222
VIT+ D
Sbjct: 184 AVITRKD 190
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+TGTT VG+ ++ VI+ + R T + + KN +K+ + AG D + +
Sbjct: 6 ETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVR 65
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHL--FKYQGHVQAALVLGGVDATGPHLHTIYP 155
+ ++L+L+R + TLL + L KY ++ L++GG+D T PH+ +I
Sbjct: 66 YMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYM-VQLLVGGID-TAPHVFSIDA 123
Query: 156 HGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G + +A+ GSGS V ES+Y E +T +EG+ LV AI + D SG +D+
Sbjct: 124 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 183
Query: 216 CVITKGD 222
VIT+ D
Sbjct: 184 AVITRKD 190
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT VGLI + VIL D RA+ G++V DK +K++ + I AG+ D +A+ ++
Sbjct: 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 101 SQLQLHRYHTGRESRVVTALTLL-----KSHLFKYQGHVQAALVLGGVD-ATGPHLHTIY 154
++ +L++ TGR + TLL S +F + + ++GG D G L ++
Sbjct: 62 AEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQI----IIGGYDLLEGAKLFSLD 117
Query: 155 PHGS-TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNV 213
P G + F GSGS A V E+ Y ++ EEGI L A+ S + D SG+ +
Sbjct: 118 PLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGI 177
Query: 214 DICVITKGDKEYLRNHQL 231
+ VITK + + ++
Sbjct: 178 SLAVITKDGVKIFEDEEI 195
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 101/187 (54%), Gaps = 8/187 (4%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT VGL+ ++GV++ + RAT G+ + K +KI+ +A + AG+ D + + ++
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARII- 59
Query: 101 SQLQLHRYHTGRESR-VVTALTLLKSHL---FKYQGHVQAALVLGGVDATGPHLHTIYP- 155
+++ + Y RE + V A+ L S+L ++Y ++ L++GG+D+ G +++I P
Sbjct: 60 -KIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYL-VQLLIGGIDSEGKSIYSIDPI 117
Query: 156 HGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G+ + GSGSL A V E ++ + +E + L AI S + D SG +D+
Sbjct: 118 GGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDV 177
Query: 216 CVITKGD 222
IT+ +
Sbjct: 178 VKITEDE 184
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 4/184 (2%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT VG+ ++ VI+ + R T + + KN +K+ + AG D + + +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHL--FKYQGHVQAALVLGGVDATGPHLHTIYPHGS 158
++L+L+R + TLL + L KY ++ L++GG+D T PH+ +I G
Sbjct: 61 AELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYM-VQLLVGGID-TAPHVFSIDAAGG 118
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
+ +A+ GSGS V ES+Y E +T +EG+ LV AI + D SG +D+ VI
Sbjct: 119 SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVI 178
Query: 219 TKGD 222
T+ D
Sbjct: 179 TRKD 182
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT + FQ G+I+ D+RATAG+ V + +K+ + P + AG AAD + +
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWL 134
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHG 157
SQ +LH V A +L + +++Y+G ++ G GP ++ + G
Sbjct: 135 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDG 194
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
+ +GSG A V +S Y+ L+ E+ + L +I + D SG +V++
Sbjct: 195 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 254
Query: 218 ITKGDKEYLRNHQL 231
+T+ Y NH +
Sbjct: 255 VTEDGWIYHGNHDV 268
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
GTT + FQ G+I+ D+RATAG+ V + +++ + P + AG AAD + +
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWL 134
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHG 157
SQ +LH V A +L + +++Y+G ++ G GP ++ + G
Sbjct: 135 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDG 194
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
+ +GSG A V +S Y+ L+ E+ + L +I + D SG +V++
Sbjct: 195 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 254
Query: 218 ITKGDKEYLRNHQL 231
+T+ Y NH +
Sbjct: 255 VTEDGWIYHGNHDV 268
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTT +G+ ++GV+L D R T+ +V ++ EKI + ++ +G AD + D
Sbjct: 36 RRGTTAIGIACKDGVVLAVDRRITS-KLVKIRSIEKIFQIDDHVAAATSGLVADARVLID 94
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
+ Q++R G E ++ L K Q + Q +L++ G+D
Sbjct: 95 RARLEAQIYRLTYGEE---ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEAR 151
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ +GSG M + E +YR+ +T +EG+ L A+ N+
Sbjct: 152 LFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKA--NEDIK 209
Query: 210 GSNVDICVITKGDKEY 225
NVD+C+IT D ++
Sbjct: 210 PENVDVCIITVKDAQF 225
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TTI+ + F GV++G+D+R +AG+ V ++ +K+ + I+C +G+AAD +A+ DM +
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGST 159
QL+LH V+ A ++K+ +KY+ + A L++ G D G ++ G
Sbjct: 61 YQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTM-GGML 119
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219
PF GSGS ++ Y+ G+T EE AI + D SG + + IT
Sbjct: 120 IRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTIT 179
Query: 220 KG--DKEYLRNHQLPN 233
D + +LP
Sbjct: 180 AAGVDHRVILGDELPK 195
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT + FQ+GVI+ D+RATAGS + K+ + P + +G AAD + +++
Sbjct: 1 TTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLA 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH-VQAALVLGGVDATGPHLHTIYPHGST 159
+ +L+ G V A LL + + +Y+G + ++ G D GP L+ + +G+
Sbjct: 61 KECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTR 120
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
+ + GSG+ A V +S YR+ L+ EE L AI D SG V++
Sbjct: 121 LSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNM 176
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT + F++GVI+ AD+RATAG+ + + +K+ + P + AG AAD +++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH-VQAALVLGGVDATGPHLHTIYPHGST 159
Q +++ V A LL + +++Y+G + ++ G D GP L+ + G+
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR 120
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
+ ++GSGS+ A V + Y L E+ L AI + D SG V++
Sbjct: 121 ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 2/193 (1%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT + FQ G+I+ D+RATAG+ V + +K+ + P + AG AAD + +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHGS 158
SQ +LH V A +L + +++Y+G ++ G GP ++ + G+
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGT 120
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
+GSG A V +S Y+ L+ E+ + L +I + D SG +V++ +
Sbjct: 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHV 180
Query: 219 TKGDKEYLRNHQL 231
T+ Y NH +
Sbjct: 181 TEDGWIYHGNHDV 193
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT + F +GVI+ AD+RATAG+ + + +K+ + P + AG AAD +++
Sbjct: 1 TTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH-VQAALVLGGVDATGPHLHTIYPHGST 159
Q +++ V A LL + +++Y+G + ++ G D GP L+ + G+
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR 120
Query: 160 DTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
+ ++GSGS+ A V + Y L EE L AI + D SG V++
Sbjct: 121 ISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNL 176
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 2/193 (1%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVS 100
TT + FQ G+I+ D+RATAG+ V + +++ + P + AG AAD + +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 101 SQLQLHRYHTGRESRVVTALTLLKSHLFKYQGH--VQAALVLGGVDATGPHLHTIYPHGS 158
SQ +LH V A +L + +++Y+G ++ G GP ++ + G+
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGT 120
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218
+GSG A V +S Y+ L+ E+ + L +I + D SG +V++ +
Sbjct: 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHV 180
Query: 219 TKGDKEYLRNHQL 231
T+ Y NH +
Sbjct: 181 TEDGWIYHGNHDV 193
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ F NGV+L +D + + ++ + EKI + + +G AD + D
Sbjct: 32 KKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
Q + G +V L+K + Q + Q +L+ G+D GP
Sbjct: 91 FARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 147
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ + +GSG A ++ E +Y+E L ++E ++L +A+ S L
Sbjct: 148 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS----LEE 203
Query: 210 GSNV---DICVITKGDKEYLRNHQ 230
G + +I IT G+K + + +
Sbjct: 204 GEELKAPEIASITVGNKYRIYDQE 227
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ F NGV+L +D + + ++ + EKI + + +G AD + D
Sbjct: 26 KKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 84
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
Q + G +V L+K + Q + Q +L+ G+D GP
Sbjct: 85 FARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 141
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ + +GSG A ++ E +Y+E L ++E ++L +A+ S L
Sbjct: 142 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS----LEE 197
Query: 210 GSNV---DICVITKGDKEYLRNHQ 230
G + +I IT G+K + + +
Sbjct: 198 GEELKAPEIASITVGNKYRIYDQE 221
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ F NGV+L +D + + ++ + EKI + + +G AD + D
Sbjct: 32 KKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
Q + G +V L+K + Q + Q +L+ G+D GP
Sbjct: 91 FARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 147
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ + +GSG A ++ E +Y+E L ++E ++L +A+ S L
Sbjct: 148 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS----LEE 203
Query: 210 GSNV---DICVITKGDKEYLRNHQ 230
G + +I IT G+K + + +
Sbjct: 204 GEELKAPEIASITVGNKYRIYDQE 227
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ F NGV+L +D + + ++ + EKI + + +G AD + D
Sbjct: 32 KKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
Q + G +V L+K + Q + Q +L+ G+D GP
Sbjct: 91 FARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 147
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ + +GSG A ++ E +Y+E L ++E ++L +A+ S L
Sbjct: 148 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS----LEE 203
Query: 210 GSNV---DICVITKGDKEYLRNHQ 230
G + +I IT G+K + + +
Sbjct: 204 GEELKAPEIASITVGNKYRIYDQE 227
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ F NGV+L +D + + ++ + EKI + + +G AD + D
Sbjct: 36 KKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 94
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
Q + G +V L+K + Q + Q +L+ G+D GP
Sbjct: 95 FARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 151
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ + +GSG A ++ E +Y+E L ++E ++L +A+ S L
Sbjct: 152 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS----LEE 207
Query: 210 GSNV---DICVITKGDKEYLRNHQ 230
G + +I IT G+K + + +
Sbjct: 208 GEELKAPEIASITVGNKYRIYDQE 231
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ F NGV+L +D + + ++ + EKI + + +G AD + D
Sbjct: 36 KKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 94
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ--------AALVLGGVDATGPH 149
Q + G +V L+K + Q + Q +L+ G+D GP
Sbjct: 95 FARISAQQEKVTYGS---LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 151
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L P G+ + +GSG A ++ E +Y+E L ++E ++L +A+ S L
Sbjct: 152 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKS----SLEE 207
Query: 210 GSNV---DICVITKGDKEYLRNHQ 230
G + +I IT G+K + + +
Sbjct: 208 GEELKAPEIASITVGNKYRIYDQE 231
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 18/197 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ GV L + R T+ ++ + EKI + +I C +G AD + + D
Sbjct: 32 KLGSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLID 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQA-----------ALVLGGVDAT 146
+ Q H + T E+ V ++T S+L G A AL+ GGVD
Sbjct: 91 KARVETQNH-WFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK 149
Query: 147 GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI--SLVCEAICSGIF 204
GP L + P G+ +GS S A + + Y + +T +E I SL+ I +
Sbjct: 150 GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLI---ILKQVM 206
Query: 205 NDLGSGSNVDICVITKG 221
+ + +N+++ + G
Sbjct: 207 EEKLNATNIELATVQPG 223
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 18/197 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ GV L + R T+ ++ + EKI + +I C +G AD + + D
Sbjct: 32 KLGSTAIGIQTSEGVCLAVEKRITS-PLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLID 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQA-----------ALVLGGVDAT 146
+ Q H + T E+ V ++T S+L G A AL+ GGVD
Sbjct: 91 KARVETQNH-WFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK 149
Query: 147 GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI--SLVCEAICSGIF 204
GP L + P G+ +GS S A + + Y + +T +E I SL+ I +
Sbjct: 150 GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLI---ILKQVM 206
Query: 205 NDLGSGSNVDICVITKG 221
+ + +N+++ + G
Sbjct: 207 EEKLNATNIELATVQPG 223
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 43 IVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQ 102
I+G+ Q+ VIL + T G V + +K ++P+ AG A DT + + +
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 103 LQLHRYHTGRESRVVTALTLLKSHL---FKYQGHVQAALVLGGVD--ATGPHLHTIYPHG 157
+QL+ E + ++ L + + Q +++GG D P L+ I G
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123
Query: 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195
+ LP+ G ++ + YR +T EEG+ L+
Sbjct: 124 TKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLL 161
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKN-CEKIHYMAPNIYCCGAGTAADTEAVT 96
K G T +G+ + GVIL AD R GS + +K+ EKI+ + +I +G AD +
Sbjct: 32 KRGATAIGIKCKEGVILIADKRV--GSKLLEKDTIEKIYKIDEHICAATSGLVADARVLI 89
Query: 97 DMVSSQLQLHRYH-----TGRESRVVTALTLLKSHLFKYQG--HVQAALVLGGVDATGPH 149
D + Q++R T +E + + K +Y G +L++ GV+ P
Sbjct: 90 DRARIEAQINRLTYDIPITVKE--LAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEV-PK 146
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L+ P G+ +G G +A FE +YR+ L+ ++ + L A+ I ++L
Sbjct: 147 LYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL-V 205
Query: 210 GSNVDICVITKGDKEY 225
N+++ + D+ +
Sbjct: 206 PENIEVGYVKVDDRTF 221
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 10/194 (5%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G T +G+ + GVIL AD R + + D EKI+ + +I +G AD + D
Sbjct: 23 KRGATAIGIKCKEGVILIADKRVGSKLLEAD-TIEKIYKIDEHICAATSGLVADARVLID 81
Query: 98 MVSSQLQLHRYHTGRESRVVTALTL----LKSHLFKYQG--HVQAALVLGGVDATGPHLH 151
+ Q++R T E V L K +Y G +L++ GVD P L+
Sbjct: 82 RARIEAQINRL-TYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV-PKLY 139
Query: 152 TIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGS 211
P G+ +G G A FE +YR+ L+ ++ + L A+ I ++L
Sbjct: 140 ETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL-VPE 198
Query: 212 NVDICVITKGDKEY 225
N+++ + D+ +
Sbjct: 199 NIEVGYVKVDDRTF 212
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 7/189 (3%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ + GV+LG + RAT+ + D + EKI + +I C +G AD ++ +
Sbjct: 32 KLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDRHIGCAMSGLTADARSMIE 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQ---AALVLGGVDA-TGPHLHTI 153
+ H + E V +LT L + AL++ G DA G L
Sbjct: 91 HARTAAVTHNLYYD-EDINVESLTQSVCDLAAAAAMSRPFGVALLIAGHDADDGYQLFHA 149
Query: 154 YPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNV 213
P G+ +GSGS A A +++ LT +E LV + I + + +N
Sbjct: 150 EPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK-ILKQVMEEKLDENNA 208
Query: 214 DICVITKGD 222
+ ITK D
Sbjct: 209 QLSCITKQD 217
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV--TDMV 99
T +G++ +G++L A+ + T+ + D + EK++ + I AG AD E + T +
Sbjct: 34 TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARI 93
Query: 100 SSQLQLHRYHTGRESRV-VTALTLLKSHLFKYQGHVQ--------AALVLGGVDAT-GPH 149
+Q L Y+ + V L+ +K QG+ Q + + G D G
Sbjct: 94 HAQNYLKTYNEDIPVEILVRRLSDIK------QGYTQHGGLRPFGVSFIYAGYDDRYGYQ 147
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L+T P G+ ++G+ + AA + + Y++ + ++ I L + + + +
Sbjct: 148 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 207
Query: 210 GSNVDICVITKG 221
++ I KG
Sbjct: 208 YDRLEFATIRKG 219
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ + GV+LG + RAT+ + D + EKI + +I C +G AD ++ +
Sbjct: 32 KLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDRHIGCAMSGLTADARSMIE 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----QGHVQ-------AALVLGGVDA- 145
+ H + + V + + ++ G + AL++ G DA
Sbjct: 91 HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 150
Query: 146 TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFN 205
G L P G+ +GSGS A A +++ LT +E LV + I +
Sbjct: 151 DGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK-ILKQVME 209
Query: 206 DLGSGSNVDICVITKGD 222
+ +N + ITK D
Sbjct: 210 EKLDENNAQLSCITKQD 226
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ + GV+LG + RAT+ + D + EKI + +I C +G AD ++ +
Sbjct: 33 KLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDRHIGCAMSGLTADARSMIE 91
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----QGHVQ-------AALVLGGVDA- 145
+ H + + V + + ++ G + AL++ G DA
Sbjct: 92 HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 151
Query: 146 TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFN 205
G L P G+ +GSGS A A +++ LT +E LV + I +
Sbjct: 152 DGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK-ILKQVME 210
Query: 206 DLGSGSNVDICVITKGD 222
+ +N + ITK D
Sbjct: 211 EKLDENNAQLSCITKQD 227
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ + GV+LG + RAT+ + D + EKI + +I C +G AD ++ +
Sbjct: 34 KLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDRHIGCAMSGLTADARSMIE 92
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----QGHVQ-------AALVLGGVDA- 145
+ H + + V + + ++ G + AL++ G DA
Sbjct: 93 HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 152
Query: 146 TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFN 205
G L P G+ +GSGS A A +++ LT +E LV + I +
Sbjct: 153 DGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK-ILKQVME 211
Query: 206 DLGSGSNVDICVITKGD 222
+ +N + ITK D
Sbjct: 212 EKLDENNAQLSCITKQD 228
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ + GV+LG + RAT+ + D + EKI + +I C +G AD ++ +
Sbjct: 32 KLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDRHIGCAMSGLTADARSMIE 90
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----QGHVQ-------AALVLGGVDA- 145
+ H + + V + + ++ G + AL++ G DA
Sbjct: 91 HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 150
Query: 146 TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFN 205
G L P G+ +GSGS A A +++ LT +E LV + I +
Sbjct: 151 DGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK-ILKQVME 209
Query: 206 DLGSGSNVDICVITKGD 222
+ +N + ITK D
Sbjct: 210 EKLDENNAQLSCITKQD 226
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV--TDMV 99
T +G++ +G++L A+ + T+ + D + EK++ + I AG AD E + T +
Sbjct: 33 TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARI 92
Query: 100 SSQLQLHRYHTGRESRV-VTALTLLKSHLFKYQGHVQ--------AALVLGGVDAT-GPH 149
+Q L Y+ + V L+ +K QG+ Q + + G D G
Sbjct: 93 HAQNYLKTYNEDIPVEILVRRLSDIK------QGYTQHGGLRPFGVSFIYAGYDDRYGYQ 146
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L+T P G+ ++G+ + AA + + Y++ + ++ I L + + + +
Sbjct: 147 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 206
Query: 210 GSNVDICVITKG 221
++ I KG
Sbjct: 207 YDRLEFATIRKG 218
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T +G+ + GV+LG + RAT+ + D + EKI + +I C +G AD ++ +
Sbjct: 24 KLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDRHIGCAMSGLTADARSMIE 82
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----QGHVQ-------AALVLGGVDA- 145
+ H + + V + + ++ G + AL++ G DA
Sbjct: 83 HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 142
Query: 146 TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFN 205
G L P G+ +GSGS A A +++ LT +E LV + I +
Sbjct: 143 DGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK-ILKQVME 201
Query: 206 DLGSGSNVDICVITKGD 222
+ +N + ITK D
Sbjct: 202 EKLDENNAQLSCITKQD 218
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV--TDMV 99
T +G++ +G++L A+ + T+ + D + EK++ + I AG AD E + T +
Sbjct: 34 TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARI 93
Query: 100 SSQLQLHRYHTGRESRV-VTALTLLKSHLFKYQGHVQ--------AALVLGGVDAT-GPH 149
+Q L Y+ + V L+ +K QG+ Q + + G D G
Sbjct: 94 HAQNYLKTYNEDIPVEILVRRLSDIK------QGYTQHGGLRPFGVSFIYAGYDDRYGYQ 147
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L+T P G+ ++G+ + AA + + Y++ + ++ I L + + + +
Sbjct: 148 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 207
Query: 210 GSNVDICVITKG 221
++ I KG
Sbjct: 208 YDRLEFATIRKG 219
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV--TDMV 99
T +G++ +G++L A+ + T+ + D + EK++ + I AG AD E + T +
Sbjct: 24 TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARI 83
Query: 100 SSQLQLHRYHTGRESRV-VTALTLLKSHLFKYQGHVQ--------AALVLGGVDAT-GPH 149
+Q L Y+ + V L+ +K QG+ Q + + G D G
Sbjct: 84 HAQNYLKTYNEDIPVEILVRRLSDIK------QGYTQHGGLRPFGVSFIYAGYDDRYGYQ 137
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L+T P G+ ++G+ + AA + + Y++ + ++ I L + + + +
Sbjct: 138 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 197
Query: 210 GSNVDICVITKG 221
++ I KG
Sbjct: 198 YDRLEFATIRKG 209
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV--TDMV 99
T +G++ +G++L A+ + T+ + D + EK++ + I AG AD E + T +
Sbjct: 21 TAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARI 80
Query: 100 SSQLQLHRYHTGRESRV-VTALTLLKSHLFKYQGHVQ--------AALVLGGVDAT-GPH 149
+Q L Y+ + V L+ +K QG+ Q + + G D G
Sbjct: 81 HAQNYLKTYNEDIPVEILVRRLSDIK------QGYTQHGGLRPFGVSFIYAGYDDRYGYQ 134
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGS 209
L+T P G+ ++G+ + AA + + Y++ + ++ I L + + + +
Sbjct: 135 LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 194
Query: 210 GSNVDICVITKG 221
++ I KG
Sbjct: 195 YDRLEFATIRKG 206
>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|W Chain W, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|KK Chain k, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|YY Chain y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|I Chain I, Mouse Constitutive 20s Proteasome
pdb|3UNE|W Chain W, Mouse Constitutive 20s Proteasome
pdb|3UNE|KK Chain k, Mouse Constitutive 20s Proteasome
pdb|3UNE|YY Chain y, Mouse Constitutive 20s Proteasome
pdb|3UNF|I Chain I, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|W Chain W, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|I Chain I, Mouse 20s Immunoproteasome
pdb|3UNH|W Chain W, Mouse 20s Immunoproteasome
Length = 205
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 4/185 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
G ++ + +N V + AD R + + + +KI M +Y AG A D + V +
Sbjct: 8 GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDAT--GPHLHTIYPH 156
+L L+ GR+ + T ++++ + L++ + G V+ G+D P + ++
Sbjct: 68 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLI 127
Query: 157 G-STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G T F G+ S + ES + + E + +A+ + + D SG V +
Sbjct: 128 GCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIV 187
Query: 216 CVITK 220
VI K
Sbjct: 188 HVIEK 192
>pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|I Chain I, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|J Chain J, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|K Chain K, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|L Chain L, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|M Chain M, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|N Chain N, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 294
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTA 89
GTTIV L ++ GV+L D RAT G+++ ++ EK+ Y+ G AGTA
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEKV-YVTDEYSAAGIAGTA 114
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 36 YRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95
Y G T++ + ++ I+ +DTR + G + ++ K + + +G D +
Sbjct: 5 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 64
Query: 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAAL--VLGGVDATGP-HLHT 152
T ++ ++L++++ H+ ++ A+ + S + + + ++GG+D G +++
Sbjct: 65 TKIIEARLKMYK-HSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 123
Query: 153 IYPHGSTDTLPFATMGSGSLAAMAVFESKY---------REGLTKEEGISLVCEAICSGI 203
P GS F GS S + +++ LT + + LV + S
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 183
Query: 204 FNDLGSGSNVDICVITKGDKEYLRNHQLP 232
D+ +G + IC++T KE +R +P
Sbjct: 184 ERDVYTGDALRICIVT---KEGIREETVP 209
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 11/188 (5%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSS 101
T +G++ +GV+L A+ R + EKI+ + ++ C AG +D +T+ +
Sbjct: 33 TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL-- 90
Query: 102 QLQLHRYHTGRES-----RVVTALTLLKSHLFKYQGHV---QAALVLGGVDATGPHLHTI 153
+L RY + ++VTAL +K ++ G + L +G G L+
Sbjct: 91 RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQS 150
Query: 154 YPHGSTDTLPFATMGSGSLAAMAVFESKYREG-LTKEEGISLVCEAICSGIFNDLGSGSN 212
P G+ +G+ S AA+++ + Y+EG +T + ++L + + + S
Sbjct: 151 DPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEK 210
Query: 213 VDICVITK 220
V+I +T+
Sbjct: 211 VEIATLTR 218
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 11/188 (5%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSS 101
T +G++ +GV+L A+ R + EKI+ + ++ C AG +D +T+ +
Sbjct: 33 TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL-- 90
Query: 102 QLQLHRYHTGRES-----RVVTALTLLKSHLFKYQGHV---QAALVLGGVDATGPHLHTI 153
+L RY + ++VTAL +K ++ G + L +G G L+
Sbjct: 91 RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQS 150
Query: 154 YPHGSTDTLPFATMGSGSLAAMAVFESKYREG-LTKEEGISLVCEAICSGIFNDLGSGSN 212
P G+ +G+ S AA+++ + Y+EG +T + ++L + + + S
Sbjct: 151 DPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEK 210
Query: 213 VDICVITK 220
V+I +T+
Sbjct: 211 VEIATLTR 218
>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|1 Chain 1, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|M Chain M, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|0 Chain 0, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|M Chain M, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|0 Chain 0, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|7 Chain 7, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 266
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 98
TGT+++ + + NGVI+ AD + GS++ E++ + N +G +D + + +
Sbjct: 40 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 99
Query: 99 VSSQLQLHRYHTGRESRVVTALTLLK-SHLFKYQGHV-----------QAALVLGGVDAT 146
+ + + Y ++ + A L+ S++F+Y V A+++ GV +
Sbjct: 100 LKDLVTENAY----DNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 155
Query: 147 GPH-LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKY-REGLTKEEGISLVCEAICSGI- 203
G L + G T + P G G+ A + RE + + + EAI + +
Sbjct: 156 GDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMR 215
Query: 204 ---FNDLGSGSNVDICVITKGDK-EYLRNHQLPNPRTYISSKGYSFPKKTEGTCITKL 257
+ D S N + +I K + +N Q+ N + + F K +G K+
Sbjct: 216 VLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK-------WDFAKDIKGYGTQKI 266
>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|X Chain X, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 4/185 (2%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 99
G ++ + +N V + AD R + + + +KI M +Y AG A D + V +
Sbjct: 8 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDAT--GPHLHTIYPH 156
+L L+ GR+ + T ++++ + L++ + G V+ G+D P + ++
Sbjct: 68 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLI 127
Query: 157 G-STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDI 215
G T F G+ + + ES + + + + +A+ + + D SG V +
Sbjct: 128 GCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIV 187
Query: 216 CVITK 220
+I K
Sbjct: 188 HIIEK 192
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTT +G+ +GV+ + T+ +V KN KI + +I C +G D + +
Sbjct: 28 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVN 86
Query: 98 M----VSSQLQLHR------YHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATG 147
+S +L++ R + V A TL S + + GGVD G
Sbjct: 87 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS-----VRPFGVSTIFGGVDKNG 141
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFE---SKYREGLTKEEGISLVCEAI 199
HL+ + P GS A G G +A A E + EGL+ E + + I
Sbjct: 142 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 196
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTT +G+ +GV+ + T+ +V KN KI + +I C +G D + +
Sbjct: 26 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVN 84
Query: 98 M----VSSQLQLHR------YHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATG 147
+S +L++ R + V A TL S + + GGVD G
Sbjct: 85 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS-----VRPFGVSTIFGGVDKNG 139
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFE---SKYREGLTKEEGISLVCEAI 199
HL+ + P GS A G G +A A E + EGL+ E + + I
Sbjct: 140 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 194
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 28/209 (13%)
Query: 36 YRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95
Y G TI+G+ ++ +L DTR + + K+ NI G AAD +A+
Sbjct: 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDAL 64
Query: 96 TDMVSSQLQLHRY-HTGRESRVVTALT-----LLKSHLFKYQGHVQAALVLGGVDATGP- 148
+ ++ + + H ++ + +A L F Y H ++ G+D G
Sbjct: 65 VKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHT----IIAGLDEDGKG 120
Query: 149 HLHTIYPHGSTDTLPFATMGSGS------LAAMAVFESKYREG-----------LTKEEG 191
+++ P GS + G+ + L F+++Y G L+ EE
Sbjct: 121 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEV 180
Query: 192 ISLVCEAICSGIFNDLGSGSNVDICVITK 220
I LV ++ S + G ++I ++TK
Sbjct: 181 IKLVRDSFTSATERHIQVGDGLEILIVTK 209
>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|2 Chain 2, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|M Chain M, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|1 Chain 1, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|M Chain M, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|T Chain T, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|M Chain M, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|1 Chain 1, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|M Chain M, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|1 Chain 1, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|M Chain M, Proteasome Inhibition By Fellutamide B
pdb|3D29|1 Chain 1, Proteasome Inhibition By Fellutamide B
pdb|3E47|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|M Chain M, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|1 Chain 1, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|N Chain N, Proteasome Activator Complex
pdb|1VSY|2 Chain 2, Proteasome Activator Complex
pdb|3L5Q|R Chain R, Proteasome Activator Complex
pdb|3L5Q|4 Chain 4, Proteasome Activator Complex
pdb|3MG4|M Chain M, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|1 Chain 1, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|M Chain M, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|1 Chain 1, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|M Chain M, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|1 Chain 1, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|M Chain M, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|1 Chain 1, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|M Chain M, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|1 Chain 1, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|M Chain M, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|AA Chain a, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|N Chain N, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|M Chain M, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|AA Chain a, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|M Chain M, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|AA Chain a, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 233
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 98
TGT+++ + + NGVI+ AD + GS++ E++ + N +G +D + + +
Sbjct: 7 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 66
Query: 99 VSSQLQLHRYHTGRESRVVTALTLLK-SHLFKYQGHV-----------QAALVLGGVDAT 146
+ + + Y ++ + A L+ S++F+Y V A+++ GV +
Sbjct: 67 LKDLVTENAY----DNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 122
Query: 147 GPH-LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKY-REGLTKEEGISLVCEAICSGI- 203
G L + G T + P G G+ A + RE + + + EAI + +
Sbjct: 123 GDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMR 182
Query: 204 ---FNDLGSGSNVDICVITKGD-KEYLRNHQLPNPRTYISSKGYSFPKKTEGTCITKL 257
+ D S N + +I K + +N Q+ N + + F K +G K+
Sbjct: 183 VLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMK-------WDFAKDIKGYGTQKI 233
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTT +G+ +GV+ + T+ +V KN KI + +I C +G D + +
Sbjct: 32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVN 90
Query: 98 M----VSSQLQLHR------YHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATG 147
+S +L++ R + V A TL S + + GGVD G
Sbjct: 91 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS-----VRPFGVSTIFGGVDKNG 145
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFE---SKYREGLTKEEGISLVCEAI 199
HL+ + P GS A G G +A A E + EGL+ E + + I
Sbjct: 146 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTT +G+ +GV+ + T+ +V KN KI + +I C +G D + +
Sbjct: 32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVN 90
Query: 98 M----VSSQLQLHR------YHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATG 147
+S +L++ R + V A TL S + G + + GGVD G
Sbjct: 91 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS--VRPFG---VSTIFGGVDKNG 145
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFE---SKYREGLTKEEGISLVCEAI 199
HL+ + P GS A G G +A A E + EGL+ E + + I
Sbjct: 146 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 28/209 (13%)
Query: 36 YRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95
Y G TI+G+ ++ +L DTR + + K+ NI G AAD +A+
Sbjct: 24 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDAL 83
Query: 96 TDMVSSQLQLHRY-HTGRESRVVTALT-----LLKSHLFKYQGHVQAALVLGGVDATGP- 148
+ ++ + + H ++ + +A L F Y H ++ G+D G
Sbjct: 84 VKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHT----IIAGLDEDGKG 139
Query: 149 HLHTIYPHGSTDTLPFATMGSGS------LAAMAVFESKYREG-----------LTKEEG 191
+++ P GS + G+ + L F+++Y G L+ EE
Sbjct: 140 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEV 199
Query: 192 ISLVCEAICSGIFNDLGSGSNVDICVITK 220
I LV ++ S + G ++I ++TK
Sbjct: 200 IKLVRDSFTSATERHIQVGDGLEILIVTK 228
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
+ GTT +G+ +GV+ + T+ +V KN KI + +I C +G D + +
Sbjct: 31 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVN 89
Query: 98 M----VSSQLQLHR------YHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATG 147
+S +L++ R + V A TL S + G + + GGVD G
Sbjct: 90 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS--VRPFG---VSTIFGGVDKNG 144
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFE---SKYREGLTKEEGISLVCEAI 199
HL+ + P GS A G G +A A E + EGL+ E + + I
Sbjct: 145 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 199
>pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|J Chain J, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|K Chain K, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|L Chain L, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|M Chain M, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|N Chain N, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 294
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTA 89
GTTIV L ++ GV+L D RAT G+++ ++ E + Y+ G AGTA
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAV-YVTDEYSAAGIAGTA 114
>pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome
pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome
pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome
pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome
pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome
pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome
pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome
Length = 235
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTA 89
TTIV L ++ GV+L D RAT G+++ ++ EK+ Y+ G AGTA
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKV-YVTDEYSAAGIAGTA 49
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 87/197 (44%), Gaps = 13/197 (6%)
Query: 36 YRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95
Y G TI+ + ++ I+ +DTR + G + ++ K + + +G D +
Sbjct: 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTL 64
Query: 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAAL--VLGGVDATGP-HLHT 152
T ++ ++L++++ H+ ++ A+ + S + + + ++GG+D G +++
Sbjct: 65 TKIIEARLKMYK-HSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYS 123
Query: 153 IYPHGSTDTLPFATMGSGSLAAMAVFESKY---------REGLTKEEGISLVCEAICSGI 203
P GS F GS S + +++ L+ + + LV + S
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 183
Query: 204 FNDLGSGSNVDICVITK 220
D+ +G + IC++TK
Sbjct: 184 ERDVYTGDALRICIVTK 200
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T VG+ ++ V+LG + ++ A + ++ KI + N+ AG AD V +
Sbjct: 27 KKGSTAVGVRGKDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIVIN 85
Query: 98 MVSSQLQLHRYHTGRESRVVTALTL----LKSHLFKYQGH----VQAALVLGGVDATGPH 149
+ Q HR T + V +T LK + G + A +V D T P
Sbjct: 86 RARVECQSHRL-TVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGT-PR 143
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL--TKEEGISLVCEAICSGIFNDL 207
L+ P G+ +G G+ + E Y + T + I LV +A+ +
Sbjct: 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVV---Q 200
Query: 208 GSGSNVDICVITK 220
G N+++ V+ +
Sbjct: 201 SGGKNIELAVMRR 213
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 21/211 (9%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G T +G+ NGV++ + ++++ + + K+ + P+I +G D + D
Sbjct: 29 KQGVTSLGIKATNGVVIATEKKSSS-PLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVD 87
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFK-YQGHVQA--------ALVLGGVDA-TG 147
S+ H + R LL S + K Q Q+ +L++ G D G
Sbjct: 88 --KSRKVAHTSYK-RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 144
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGIS---LVCEAICSGIF 204
L+ + P GS +G GS+AA E ++ + L E+ I L + G F
Sbjct: 145 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF 204
Query: 205 NDLGSGSNVDICVITKGDKEYLRNHQLPNPR 235
N G +++ +I + + L +P +
Sbjct: 205 N----GDTIELAIIGDENPDLLGYTGIPTDK 231
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 43 IVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQ 102
++G+ + V++ +D A + + + +K+ M+ I G A DT + +
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 103 LQLHRYHTGRESRVVTALTLLKSHL---FKYQGHVQAALVLGGVDA-TGPHLHTIYPHGS 158
+QL++ G E A + +L + + L+L G D GP L+ + +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195
PFA G G+ +++ + Y +++E + L+
Sbjct: 124 LAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL 160
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 43 IVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQ 102
++G+ + V++ +D A + + + +K+ M+ I G A DT + +
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 103 LQLHRYHTGRESRVVTALTLLKSHL---FKYQGHVQAALVLGGVDA-TGPHLHTIYPHGS 158
+QL++ G E A + +L + + L+L G D GP L+ + +
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123
Query: 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195
PFA G G+ +++ + Y +++E + L+
Sbjct: 124 LAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL 160
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 27/225 (12%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G T +G+ NGV++ + ++++ + + K+ + P+I +G D + D
Sbjct: 10 KQGVTSLGIKATNGVVIATEKKSSS-PLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVD 68
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKSHLFK-YQGHVQA--------ALVLGGVDA-TG 147
S+ H + R LL S + K Q Q+ +L++ G D G
Sbjct: 69 --KSRKVAHTSYK-RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 125
Query: 148 PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGIS---LVCEAICSGIF 204
L+ + P GS +G GS+AA E ++ + L E+ I L + G F
Sbjct: 126 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF 185
Query: 205 NDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPKKT 249
N G +++ +I + + L +P + KG F K T
Sbjct: 186 N----GDTIELAIIGDENPDLLGYTGIP------TDKGPRFRKLT 220
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K G+T VG+ ++ V+LG + ++ A + ++ KI + N+ AG AD V +
Sbjct: 27 KKGSTAVGVRGRDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIVIN 85
Query: 98 MVSSQLQLHRYHTGRESRVVTALTL----LKSHLFKYQGH----VQAALVLGGVDATGPH 149
+ Q HR T + V +T LK + G + A +V D T P
Sbjct: 86 RARVECQSHRL-TVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGT-PR 143
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL--TKEEGISLVCEAICSGIFNDL 207
L+ P G+ +G G+ + E Y + T + I LV +A+ +
Sbjct: 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVV---Q 200
Query: 208 GSGSNVDICVITK 220
G N+++ V+ +
Sbjct: 201 SGGKNIELAVMRR 213
>pdb|2JAY|A Chain A, Proteasome Beta Subunit Prcb From Mycobacterium
Tuberculosis
Length = 291
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTAADTEAVTDM 98
GTTIV L + GV++ D R+T G+++ ++ K+ Y+ + G AGTAA +
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKV-YITDDYTATGIAGTAAVAVEFARL 115
Query: 99 VSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP--HLHTIYPH 156
+ +L+ ++ E +T + +G++ AA+ +H P
Sbjct: 116 YAVELE---HYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQ 172
Query: 157 GSTDTLPF-------------ATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI 203
+ + F +GSGSL A + + Y + + G+ + EA+
Sbjct: 173 SAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAA 232
Query: 204 FNDLGSG 210
+D +G
Sbjct: 233 DDDSATG 239
>pdb|3MKA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
Length = 291
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTAADTEAVTDM 98
G TIV L + GV++ D R+T G+++ ++ K+ Y+ + G AGTAA +
Sbjct: 57 GATIVALKYPGGVVMAGDRRSTQGNMISGRDVRKV-YITDDYTATGIAGTAAVAVEFARL 115
Query: 99 VSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGP--HLHTIYPH 156
+ +L+ ++ E +T + +G++ AA+ +H P
Sbjct: 116 YAVELE---HYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQ 172
Query: 157 GSTDTLPF-------------ATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI 203
+ + F +GSGSL A + + Y + + G+ + EA+
Sbjct: 173 SAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAA 232
Query: 204 FNDLGSG 210
+D +G
Sbjct: 233 DDDSATG 239
>pdb|2FHG|H Chain H, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|C Chain C, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|E Chain E, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|G Chain G, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|J Chain J, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|L Chain L, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|N Chain N, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|P Chain P, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|R Chain R, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|T Chain T, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|V Chain V, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|X Chain X, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|Z Chain Z, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|2 Chain 2, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHH|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|3HFA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3MFE|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MI0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3KRD|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
Length = 240
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTAA 90
TTIV L + GV++ D R+T G+++ ++ K+ Y+ + G AGTAA
Sbjct: 1 TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKV-YITDDYTATGIAGTAA 50
>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|2 Chain 2, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 219
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93
TGT+++G+ F+ GV++ AD + GS+ +N +I + + +G AD +
Sbjct: 7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61
>pdb|3UNB|M Chain M, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|AA Chain a, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|OO Chain o, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|3 Chain 3, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|M Chain M, Mouse Constitutive 20s Proteasome
pdb|3UNE|AA Chain a, Mouse Constitutive 20s Proteasome
pdb|3UNE|OO Chain o, Mouse Constitutive 20s Proteasome
pdb|3UNE|3 Chain 3, Mouse Constitutive 20s Proteasome
pdb|3UNF|M Chain M, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|AA Chain a, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|M Chain M, Mouse 20s Immunoproteasome
pdb|3UNH|AA Chain a, Mouse 20s Immunoproteasome
Length = 219
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93
TGT+++G+ F GV++ AD + GS+ +N +I + + +G AD +
Sbjct: 7 TGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQ 61
>pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1KYI|G Chain G, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|H Chain H, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|I Chain I, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|J Chain J, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|K Chain K, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|L Chain L, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|M Chain M, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|N Chain N, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|O Chain O, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|P Chain P, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|Q Chain Q, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|R Chain R, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1OFH|G Chain G, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|H Chain H, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|I Chain I, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|L Chain L, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|M Chain M, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|N Chain N, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|G Chain G, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|H Chain H, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|I Chain I, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|L Chain L, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|M Chain M, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|N Chain N, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 174
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTAADTEAVTDMV 99
TTIV + V++G D + + G+ V N K+ + G AG AD + ++
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 100 SSQLQLHRYH-------TGRESRVVTALTLLKSHLFKYQGHVQAALVLGGV-DATGPHLH 151
+L++H+ H ++ R AL L++ L + +L++ G+ D P
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLI--VADEKESLIITGIGDVVQPEED 118
Query: 152 TIYPHGS 158
I GS
Sbjct: 119 QILAIGS 125
>pdb|3H6F|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3HF9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|HH Chain h, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|CC Chain c, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|EE Chain e, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|GG Chain g, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|JJ Chain j, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|LL Chain l, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|NN Chain n, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|PP Chain p, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|RR Chain r, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|TT Chain t, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|VV Chain v, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|XX Chain x, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|ZZ Chain z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|4 Chain 4, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3MFE|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
Length = 240
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 42 TIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTAA 90
TIV L + GV++ D R+T G+++ ++ K+ Y+ + G AGTAA
Sbjct: 2 TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKV-YITDDYTATGIAGTAA 50
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 82 YCCGAGTAADTEAVTDMVSSQLQLHRYHTG--RESRVVTALT----LLKSHLFKYQGHVQ 135
+ GT+AD+EA+ D + LH G S +VT ++ +H FK+ +Q
Sbjct: 582 WAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHNDRVVPAHSFKFAATLQ 641
Query: 136 AALVLGGVDATGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
A D GPH + T HG+ + S + A ++E YRE
Sbjct: 642 A-------DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRE 688
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 82 YCCGAGTAADTEAVTDMVSSQLQLHRYHTG--RESRVVTALT----LLKSHLFKYQGHVQ 135
+ GT+AD+EA+ D + LH G S +VT ++ +H FK+ +Q
Sbjct: 582 WAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQ 641
Query: 136 AALVLGGVDATGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
A D GPH + T HG+ + S + A ++E YRE
Sbjct: 642 A-------DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRE 688
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 82 YCCGAGTAADTEAVTDMVSSQLQLHRYHTG---RESRVVTA---LTLLKSHLFKYQGHVQ 135
+ GT+AD+EA D + LH G + V TA ++ +H FK+ +Q
Sbjct: 582 WAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPAHSFKFAATLQ 641
Query: 136 AALVLGGVDATGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
A D GPH + T HG+ + S + A ++E YRE
Sbjct: 642 A-------DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEXGYRE 688
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 82 YCCGAGTAADTEAVTDMVSSQLQLHRYHTG---RESRVVTA---LTLLKSHLFKYQGHVQ 135
+ GT+AD+EA D + LH G + V TA ++ +H FK+ +Q
Sbjct: 582 WAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPAHSFKFAATLQ 641
Query: 136 AALVLGGVDATGPH-----LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184
A D GPH + T HG+ + S + A ++E YRE
Sbjct: 642 A-------DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEXGYRE 688
>pdb|1M4Y|A Chain A, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|B Chain B, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|C Chain C, Crystal Structure Of Hslv From Thermotoga Maritima
Length = 171
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 41 TTIVGLIFQNG-VILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-AGTAADTEAVTDM 98
TTI+ ++ +NG ++G D + T GS V N K+ + G AG+ AD + D
Sbjct: 1 TTIL-VVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDR 59
Query: 99 VSSQLQ-------------LHRYHTGRESRVVTALTLL--KSHLFKYQGH 133
++L+ + T R R + AL L+ K ++F G+
Sbjct: 60 FEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGN 109
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K GT VG+ +N V+LG + R+T K+ + ++ +G AD+ + +
Sbjct: 28 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 87
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKS---HLFKYQGHVQ---AALVLGGVDATG--PH 149
+ Q HR T + V LT + + G V+ + ++ G D P
Sbjct: 88 KARVEAQSHRL-TLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 146
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG---LTKEEGISLVCEAICSGIFND 206
L+ P G + T+G S E Y T EE + L ++ +
Sbjct: 147 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT- 205
Query: 207 LGSGSNVDICVI 218
N++I V+
Sbjct: 206 --GAKNIEITVV 215
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K GT VG+ +N V+LG + R+T K+ + ++ +G AD+ + +
Sbjct: 26 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 85
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKS---HLFKYQGHVQ---AALVLGGVDATG--PH 149
+ Q HR T + V LT + + G V+ + ++ G D P
Sbjct: 86 KARVEAQSHRL-TLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 144
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG---LTKEEGISLVCEAICSGIFND 206
L+ P G + T+G S E Y T EE + L ++ +
Sbjct: 145 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT- 203
Query: 207 LGSGSNVDICVI 218
N++I V+
Sbjct: 204 --GAKNIEITVV 213
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K GT VG+ +N V+LG + R+T K+ + ++ +G AD+ + +
Sbjct: 28 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 87
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKS---HLFKYQGHVQ---AALVLGGVDATG--PH 149
+ Q HR T + V LT + + G V+ + ++ G D P
Sbjct: 88 KARVEAQSHRL-TLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 146
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG---LTKEEGISLVCEAICSGIFND 206
L+ P G + T+G S E Y T EE + L ++ +
Sbjct: 147 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT- 205
Query: 207 LGSGSNVDICVI 218
N++I V+
Sbjct: 206 --GAKNIEITVV 215
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTD 97
K GT VG+ +N V+LG + R+T K+ + ++ +G AD+ + +
Sbjct: 12 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 71
Query: 98 MVSSQLQLHRYHTGRESRVVTALTLLKS---HLFKYQGHVQ---AALVLGGVDATG--PH 149
+ Q HR T + V LT + + G V+ + ++ G D P
Sbjct: 72 KARVEAQSHRL-TLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 130
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREG---LTKEEGISLVCEAICSGIFND 206
L+ P G + T+G S E Y T EE + L ++ +
Sbjct: 131 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT- 189
Query: 207 LGSGSNVDICVI 218
N++I V+
Sbjct: 190 --GAKNIEITVV 199
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 26/195 (13%)
Query: 47 IFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-------AGTAADTEAVTDMV 99
I Q V +G + A + +N +++ I C AG A D +++ +
Sbjct: 28 IKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 87
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLF--KYQGHVQAA--------LVLGGVDATGPH 149
Q R+ V A HL K Q + Q+A L++ G D +G H
Sbjct: 88 RQQCNYSSLVFNRKLAVERA-----GHLLCDKAQKNTQSAGGRPYGVGLLIIGYDKSGAH 142
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL----TKEEGISLVCEAICSGIFN 205
L P G+ L +G+ S A E + +E I EAI + +
Sbjct: 143 LLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRD 202
Query: 206 DLGSGSNVDICVITK 220
+ + N+ I ++ K
Sbjct: 203 ESLTVDNLSIAIVGK 217
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 26/195 (13%)
Query: 47 IFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-------AGTAADTEAVTDMV 99
I Q V +G + A + +N +++ I C AG A D +++ +
Sbjct: 29 IKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 88
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLF--KYQGHVQAA--------LVLGGVDATGPH 149
Q R+ V A HL K Q + Q+A L++ G D +G H
Sbjct: 89 RQQCNYSSLVFNRKLAVERA-----GHLLCDKAQKNTQSAGGRPYGVGLLIIGYDKSGAH 143
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL----TKEEGISLVCEAICSGIFN 205
L P G+ L +G+ S A E + +E I EAI + +
Sbjct: 144 LLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRD 203
Query: 206 DLGSGSNVDICVITK 220
+ + N+ I ++ K
Sbjct: 204 ESLTVDNLSIAIVGK 218
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 71 CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY 108
C+K H + P++ CC A D + V+ ++ + + +Y
Sbjct: 120 CKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQY 157
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 167 MGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
M G L A+ E + +G++KEE I ++ +A+ S + G+ NV++ +
Sbjct: 1 MNIGLLEALDQLEEE--KGISKEEVIPILEKALVSAYRKNFGNSKNVEVVI 49
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 26/195 (13%)
Query: 47 IFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-------AGTAADTEAVTDMV 99
I Q V +G + A + +N +++ I C AG A D +++ +
Sbjct: 29 IKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 88
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLF--KYQGHVQA--------ALVLGGVDATGPH 149
Q R+ V A HL K Q + Q+ L++ G D +G H
Sbjct: 89 RQQCNYSSLVFNRKLAVERA-----GHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAH 143
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL----TKEEGISLVCEAICSGIFN 205
L P G+ L +G+ S A E + +E I EAI + +
Sbjct: 144 LLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRD 203
Query: 206 DLGSGSNVDICVITK 220
+ + N+ I ++ K
Sbjct: 204 ESLTVDNLSIAIVGK 218
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 26/195 (13%)
Query: 47 IFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-------AGTAADTEAVTDMV 99
I Q V +G + A + +N +++ I C AG A D +++ +
Sbjct: 30 IKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 89
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLF--KYQGHVQA--------ALVLGGVDATGPH 149
Q R+ V A HL K Q + Q+ L++ G D +G H
Sbjct: 90 RQQCNYSSLVFNRKLAVERA-----GHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAH 144
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL----TKEEGISLVCEAICSGIFN 205
L P G+ L +G+ S A E + +E I EAI + +
Sbjct: 145 LLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRD 204
Query: 206 DLGSGSNVDICVITK 220
+ + N+ I ++ K
Sbjct: 205 ESLTVDNLSIAIVGK 219
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 NIGIPPKGGFSFDLCRRNDMLSKKGIVPP 33
N I P GF LC+ ND L+K+G + P
Sbjct: 156 NREIGPNDGFLAQLCQLNDRLAKEGKLKP 184
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 NIGIPPKGGFSFDLCRRNDMLSKKGIVPP 33
N I P GF LC+ ND L+K+G + P
Sbjct: 156 NREIGPNDGFLAQLCQLNDRLAKEGKLKP 184
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 26/195 (13%)
Query: 47 IFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCG-------AGTAADTEAVTDMV 99
I Q V +G + A + +N +++ I C AG A D +++ +
Sbjct: 28 IKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYL 87
Query: 100 SSQLQLHRYHTGRESRVVTALTLLKSHLF--KYQGHVQA--------ALVLGGVDATGPH 149
Q R+ V A HL K Q + Q+ L++ G D +G H
Sbjct: 88 RQQCNYSSLVFNRKLAVERA-----GHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAH 142
Query: 150 LHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGL----TKEEGISLVCEAICSGIFN 205
L P G+ L +G+ S A E + +E I EAI + +
Sbjct: 143 LLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRD 202
Query: 206 DLGSGSNVDICVITK 220
+ + N+ I ++ K
Sbjct: 203 ESLTVDNLSIAIVGK 217
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 NIGIPPKGGFSFDLCRRNDMLSKKGIVPP 33
N I P GF LC+ ND L+K+G + P
Sbjct: 155 NREIGPNDGFLAQLCQLNDRLAKEGKLKP 183
>pdb|1Q5Q|A Chain A, The Rhodococcus 20s Proteasome
pdb|1Q5Q|B Chain B, The Rhodococcus 20s Proteasome
pdb|1Q5Q|C Chain C, The Rhodococcus 20s Proteasome
pdb|1Q5Q|D Chain D, The Rhodococcus 20s Proteasome
pdb|1Q5Q|E Chain E, The Rhodococcus 20s Proteasome
pdb|1Q5Q|F Chain F, The Rhodococcus 20s Proteasome
pdb|1Q5Q|G Chain G, The Rhodococcus 20s Proteasome
pdb|2H6J|A Chain A, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|B Chain B, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|C Chain C, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|D Chain D, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|E Chain E, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|F Chain F, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|G Chain G, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 259
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 18 LCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM 77
+ R L++KGI G ++V L F++GV+ A+ +TA K+ +
Sbjct: 12 IMRDRSELARKGIA-------RGRSVVVLTFRDGVLFVAENPSTA--------LHKVSEL 56
Query: 78 APNIYCCGAGTAADTEAVTD--MVSSQLQLHRYH----TGRESRVVTALTL---LKSHLF 128
+ G + E + +V + ++ + Y TGR A TL
Sbjct: 57 YDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPK 116
Query: 129 KYQGHVQAALVLGGVDATGPHLHTIYPHGS-TDTLPFATMGSGSLAAMAVFESKYREGLT 187
Y+ + A V P L+ I GS D F MG + YR L
Sbjct: 117 PYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD 176
Query: 188 KEEGISLVCEAICSGIFNDLGSGSNVDIC 216
E + + A+ G + G NVD+
Sbjct: 177 LEAAVGIAVNALRQGGAGE-GEKRNVDVA 204
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICV 217
G L A+ E + +G++KEE I ++ +A+ S + G+ NV++ +
Sbjct: 29 GLLEALDQLEEE--KGISKEEVIPILEKALVSAYRKNFGNSKNVEVVI 74
>pdb|1Q5R|A Chain A, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|B Chain B, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|C Chain C, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|D Chain D, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|E Chain E, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|F Chain F, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|G Chain G, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 259
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 26/209 (12%)
Query: 18 LCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM 77
+ R L++KGI G ++V L F++GV+ A+ +TA K+ +
Sbjct: 12 IMRDRSELARKGIA-------RGRSVVVLTFRDGVLFVAENPSTA--------LHKVSEL 56
Query: 78 APNIYCCGAGTAADTEAVTD--MVSSQLQLHRYH----TGR---ESRVVTALTLLKSHLF 128
+ G + E + +V + ++ + Y TGR + T T+
Sbjct: 57 YDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPK 116
Query: 129 KYQGHVQAALVLGGVDATGPHLHTIYPHGS-TDTLPFATMGSGSLAAMAVFESKYREGLT 187
Y+ + A V P L+ I GS D F MG + YR L
Sbjct: 117 PYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD 176
Query: 188 KEEGISLVCEAICSGIFNDLGSGSNVDIC 216
E + + A+ G + G NVD+
Sbjct: 177 LEAAVGIAVNALRQGGAGE-GEKRNVDVA 204
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCD-KNCEKIHYMAPNIYCCGAGTAADTEAVTDM 98
G VG+ NGV+L + + SI+ D ++ K+ + +I +G D +
Sbjct: 32 GAPSVGIKAANGVVLATEKKQK--SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 89
Query: 99 VSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQA--------ALVLGGVDATGPHL 150
Q +Y+ + + TA L++ Q + Q+ +L++ G + P+L
Sbjct: 90 ARKLAQ--QYYLVYQEPIPTA-QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYL 146
Query: 151 HTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI 192
P G+ MG + E +Y E L E+ I
Sbjct: 147 FQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAI 188
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 40 GTTIVGLIFQNGVILGADTRATAGSIVCD-KNCEKIHYMAPNIYCCGAGTAADTEAVTDM 98
G VG+ NGV+L + + SI+ D ++ K+ + +I +G D +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQK--SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88
Query: 99 VSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQA--------ALVLGGVDATGPHL 150
Q +Y+ + + TA L++ Q + Q+ +L++ G + P+L
Sbjct: 89 ARKLAQ--QYYLVYQEPIPTA-QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYL 145
Query: 151 HTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI 192
P G+ MG + E +Y E L E+ I
Sbjct: 146 FQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAI 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,999,193
Number of Sequences: 62578
Number of extensions: 323399
Number of successful extensions: 797
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 110
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)