Query 024919
Match_columns 260
No_of_seqs 121 out of 1107
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 4.4E-53 9.6E-58 365.8 21.6 212 15-233 7-224 (227)
2 KOG0176 20S proteasome, regula 100.0 1.2E-52 2.6E-57 341.6 16.5 216 11-233 10-236 (241)
3 PTZ00246 proteasome subunit al 100.0 1.2E-51 2.7E-56 362.2 22.9 218 15-237 11-240 (253)
4 PRK03996 proteasome subunit al 100.0 9.3E-52 2E-56 360.6 21.6 220 8-234 4-235 (241)
5 COG0638 PRE1 20S proteasome, a 100.0 2.1E-51 4.6E-56 356.8 22.6 216 14-234 8-228 (236)
6 TIGR03633 arc_protsome_A prote 100.0 3.6E-51 7.8E-56 353.2 23.6 202 15-223 9-215 (224)
7 cd03751 proteasome_alpha_type_ 100.0 7E-51 1.5E-55 348.6 22.0 198 15-218 10-212 (212)
8 cd03752 proteasome_alpha_type_ 100.0 1.2E-50 2.5E-55 347.5 22.5 199 15-218 9-213 (213)
9 cd03749 proteasome_alpha_type_ 100.0 5.5E-50 1.2E-54 342.9 22.2 197 15-219 7-211 (211)
10 cd03755 proteasome_alpha_type_ 100.0 7.8E-50 1.7E-54 341.0 21.5 196 14-218 6-207 (207)
11 cd03756 proteasome_alpha_arche 100.0 1.3E-49 2.7E-54 340.7 22.7 198 15-219 8-210 (211)
12 cd03753 proteasome_alpha_type_ 100.0 1.9E-49 4.1E-54 340.0 22.3 197 15-218 7-213 (213)
13 cd01911 proteasome_alpha prote 100.0 6.8E-49 1.5E-53 335.6 21.1 198 14-218 6-209 (209)
14 cd03754 proteasome_alpha_type_ 100.0 8.8E-49 1.9E-53 336.3 20.9 197 15-218 8-215 (215)
15 cd03763 proteasome_beta_type_7 100.0 8.1E-45 1.8E-49 305.9 25.9 189 41-229 1-189 (189)
16 cd03761 proteasome_beta_type_5 100.0 1.1E-44 2.4E-49 304.9 25.5 186 41-226 1-187 (188)
17 cd03760 proteasome_beta_type_4 100.0 2.1E-44 4.5E-49 305.3 24.7 190 39-228 1-197 (197)
18 cd03759 proteasome_beta_type_3 100.0 4E-44 8.6E-49 303.2 25.4 188 39-226 2-192 (195)
19 cd03757 proteasome_beta_type_1 100.0 4.3E-44 9.3E-49 306.7 25.2 193 34-226 2-205 (212)
20 TIGR03634 arc_protsome_B prote 100.0 5E-44 1.1E-48 299.9 24.9 184 40-223 1-185 (185)
21 KOG0184 20S proteasome, regula 100.0 2.7E-45 5.9E-50 303.4 16.4 210 9-224 3-224 (254)
22 cd03758 proteasome_beta_type_2 100.0 6.5E-44 1.4E-48 301.4 25.1 186 41-226 2-191 (193)
23 KOG0173 20S proteasome, regula 100.0 3.8E-44 8.3E-49 301.6 22.7 253 5-259 3-255 (271)
24 PTZ00488 Proteasome subunit be 100.0 5.9E-44 1.3E-48 311.8 24.2 200 36-235 35-235 (247)
25 cd03764 proteasome_beta_archea 100.0 1.9E-43 4.1E-48 297.2 25.5 187 41-227 1-188 (188)
26 cd03762 proteasome_beta_type_6 100.0 3.1E-43 6.8E-48 295.9 25.5 185 41-225 1-186 (188)
27 KOG0183 20S proteasome, regula 100.0 9.7E-45 2.1E-49 298.7 13.5 210 16-234 11-229 (249)
28 KOG0178 20S proteasome, regula 100.0 4.2E-44 9.1E-49 294.3 17.0 209 11-224 7-222 (249)
29 KOG0181 20S proteasome, regula 100.0 5.4E-45 1.2E-49 296.3 11.3 214 15-235 12-230 (233)
30 cd03765 proteasome_beta_bacter 100.0 8.1E-43 1.8E-47 302.0 23.4 206 41-248 1-227 (236)
31 TIGR03690 20S_bact_beta protea 100.0 3.2E-42 7E-47 296.4 23.7 196 39-234 1-210 (219)
32 cd01912 proteasome_beta protea 100.0 1.1E-41 2.3E-46 286.4 25.2 185 41-225 1-187 (189)
33 TIGR03691 20S_bact_alpha prote 100.0 2.9E-41 6.3E-46 291.6 21.3 196 25-233 17-226 (228)
34 KOG0863 20S proteasome, regula 100.0 6.8E-41 1.5E-45 278.6 15.7 212 15-234 12-232 (264)
35 cd01906 proteasome_protease_Hs 100.0 2.4E-39 5.2E-44 270.0 23.6 178 41-218 1-182 (182)
36 PF00227 Proteasome: Proteasom 100.0 3.1E-39 6.7E-44 271.1 22.6 182 37-218 1-190 (190)
37 KOG0182 20S proteasome, regula 100.0 9.2E-40 2E-44 268.9 17.7 218 10-234 5-238 (246)
38 KOG0179 20S proteasome, regula 100.0 5.2E-38 1.1E-42 258.1 19.9 210 13-225 5-227 (235)
39 KOG0174 20S proteasome, regula 100.0 1.1E-37 2.3E-42 253.5 16.7 198 35-232 14-214 (224)
40 KOG0185 20S proteasome, regula 100.0 3.4E-37 7.4E-42 257.2 17.8 227 15-243 15-253 (256)
41 KOG0177 20S proteasome, regula 100.0 1.6E-35 3.4E-40 240.2 18.4 192 41-232 2-197 (200)
42 KOG0175 20S proteasome, regula 100.0 6.1E-34 1.3E-38 240.5 16.6 198 37-234 68-266 (285)
43 PRK05456 ATP-dependent proteas 100.0 1.1E-32 2.5E-37 227.9 20.3 166 40-217 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 3.7E-32 8E-37 223.6 20.3 165 41-217 1-170 (171)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1E-31 2.3E-36 220.9 20.4 165 41-217 1-170 (171)
46 KOG0180 20S proteasome, regula 100.0 2.9E-29 6.3E-34 200.8 18.8 187 38-224 6-195 (204)
47 cd01901 Ntn_hydrolase The Ntn 100.0 4.6E-28 1E-32 196.1 21.4 160 41-200 1-163 (164)
48 COG3484 Predicted proteasome-t 99.6 1.6E-15 3.4E-20 125.2 9.8 207 40-249 1-229 (255)
49 COG5405 HslV ATP-dependent pro 99.6 1.3E-14 2.7E-19 115.9 13.7 170 38-219 2-176 (178)
50 PF10584 Proteasome_A_N: Prote 98.8 1.2E-09 2.5E-14 59.5 -0.4 14 15-28 7-20 (23)
51 PF09894 DUF2121: Uncharacteri 96.7 0.15 3.2E-06 42.8 14.9 51 172-222 131-181 (194)
52 COG4079 Uncharacterized protei 90.5 11 0.00025 32.9 15.2 149 41-222 2-182 (293)
53 KOG3361 Iron binding protein i 87.2 0.73 1.6E-05 36.3 3.3 44 151-194 71-114 (157)
54 PF12465 Pr_beta_C: Proteasome 39.8 19 0.00042 22.0 1.4 20 238-257 6-25 (38)
55 PF07499 RuvA_C: RuvA, C-termi 38.2 26 0.00056 22.2 1.8 32 167-198 13-45 (47)
56 PRK09732 hypothetical protein; 37.9 91 0.002 24.6 5.3 35 184-222 5-39 (134)
57 PF03928 DUF336: Domain of unk 37.5 61 0.0013 25.2 4.3 35 185-223 2-36 (132)
58 PF06243 PaaB: Phenylacetic ac 36.7 56 0.0012 24.3 3.7 56 187-249 28-83 (94)
59 PF08269 Cache_2: Cache domain 34.9 54 0.0012 23.6 3.4 42 184-230 33-74 (95)
60 smart00463 SMR Small MutS-rela 33.8 74 0.0016 22.2 3.9 37 185-225 8-44 (80)
61 COG3193 GlcG Uncharacterized p 28.5 1.6E+02 0.0035 23.6 5.2 35 184-222 6-40 (141)
62 COG0822 IscU NifU homolog invo 28.2 1.5E+02 0.0032 23.9 5.1 55 148-203 43-98 (150)
63 cd04513 Glycosylasparaginase G 27.9 2.4E+02 0.0053 25.0 6.8 57 164-223 187-247 (263)
64 cd04512 Ntn_Asparaginase_2_lik 26.7 3.4E+02 0.0075 23.8 7.5 55 163-223 175-233 (248)
65 PF12566 DUF3748: Protein of u 24.4 45 0.00098 25.8 1.4 29 1-29 52-88 (122)
66 PF01592 NifU_N: NifU-like N t 21.4 1.9E+02 0.0042 22.2 4.5 57 148-204 38-96 (126)
67 cd04702 ASRGL1_like ASRGL1_lik 21.1 3.7E+02 0.0079 23.9 6.6 54 164-223 179-236 (261)
68 PRK15494 era GTPase Era; Provi 20.6 4.1E+02 0.0089 24.1 7.2 63 115-177 231-299 (339)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-53 Score=365.83 Aligned_cols=212 Identities=19% Similarity=0.278 Sum_probs=201.0
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
.|||||||+||||| ++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|..+|++.
T Consensus 7 ~fsp~Grl~QveyA-----~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 7 TFSPSGKLVQIEYA-----LAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred eECCCCeEhHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 69999999999999 9999999999999999999999999998 47888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++++|.+++.|++.++++++++.+++++++.++.+ .|||++++|++|||++||+||.+||+|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 999999999999999999999999999999988654 379999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC-CEEEeccccCCC
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPN 233 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~-g~~~~~~~~~~~ 233 (260)
|+.+++++||+.|+++||++||++++++||+.+.+++. ++.+++|.+++++ |.+.+.|+++.+
T Consensus 161 g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~~ 224 (227)
T cd03750 161 NYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIKD 224 (227)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHHH
Confidence 99999999999999999999999999999999998875 7899999999995 799988887654
No 2
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-52 Score=341.62 Aligned_cols=216 Identities=23% Similarity=0.332 Sum_probs=203.8
Q ss_pred CCCccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChH
Q 024919 11 KGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAA 90 (260)
Q Consensus 11 ~~g~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 90 (260)
++=|+||||||||||||| .+|++.|+|.|||+.++|||||+++|+++ .+..+++..||++|++||+|++||+.+
T Consensus 10 rgVNTfSpEGRlfQVEYa-----ieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 10 RGVNTFSPEGRLFQVEYA-----IEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred ccccccCCCceeeehhhH-----HHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeecccccc
Confidence 455789999999999999 99999999999999999999999999998 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc----------cCccceEEEEEEEeCCCCEEEEEcCCCCcc
Q 024919 91 DTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----------QGHVQAALVLGGVDATGPHLHTIYPHGSTD 160 (260)
Q Consensus 91 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~----------~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~ 160 (260)
|++.++++.|.++++|.+.|+++++++++.+.+++.-.++ .|||||++|+||+|++||+||+.||+|++.
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~ 163 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFI 163 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceE
Confidence 9999999999999999999999999999999999887554 389999999999999999999999999999
Q ss_pred ccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC-CEEEeccccCCC
Q 024919 161 TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPN 233 (260)
Q Consensus 161 ~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~-g~~~~~~~~~~~ 233 (260)
++++-|||+|+.-+++.|++.|+++++++||+.+++..|+..++.... .+++++.+++++ +.++.+|++++.
T Consensus 164 ~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~-~~Nvev~~vt~e~~f~~~t~EE~~~ 236 (241)
T KOG0176|consen 164 RYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLN-SNNVEVAVVTPEGEFHIYTPEEVEQ 236 (241)
T ss_pred EecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcC-ccceEEEEEcccCceEecCHHHHHH
Confidence 999999999999999999999999999999999999999999987754 689999999998 689999887653
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.2e-51 Score=362.20 Aligned_cols=218 Identities=20% Similarity=0.313 Sum_probs=203.6
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++|+++|+|+|||+++||||||+|+|.+++.++..++.+|||+|+++++|+++|..+|++.
T Consensus 11 ~fsp~Grl~QvEYA-----~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 85 (253)
T PTZ00246 11 TFSPEGRLYQVEYA-----LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANI 85 (253)
T ss_pred eECCCCEEhHHHHH-----HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHH
Confidence 39999999999999 9999999999999999999999999999987777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEc
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMG 168 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG 168 (260)
+++.+|.+++.|++.++++++++.+++.++..++.+ .|||++++|+||||+ .||+||.+||+|++.+++++|+|
T Consensus 86 l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G 165 (253)
T PTZ00246 86 LINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIG 165 (253)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEEC
Confidence 999999999999999999999999999998876543 379999999999995 78999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC------EEEeccccCCCCCcc
Q 024919 169 SGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD------KEYLRNHQLPNPRTY 237 (260)
Q Consensus 169 ~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g------~~~~~~~~~~~~~~~ 237 (260)
+|+.+++++||+.|+++||++||++++++||+.+..+|..+++.++|++|+++| .+.+.+.++++...-
T Consensus 166 ~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 166 QNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875 578888887776443
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=9.3e-52 Score=360.58 Aligned_cols=220 Identities=27% Similarity=0.348 Sum_probs=203.8
Q ss_pred CCCCCCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEE
Q 024919 8 IPPKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIY 82 (260)
Q Consensus 8 ~~~~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~ 82 (260)
.|.+.||+ |||+|||+||||| .+|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++
T Consensus 4 ~~~~~~y~~~~~~fsp~Gr~~Q~eya-----~~av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~ 77 (241)
T PRK03996 4 QPQQMGYDRAITIFSPDGRLYQVEYA-----REAVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIG 77 (241)
T ss_pred CccccccCCCCceECCCCeEhHHHHH-----HHHHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEE
Confidence 47788886 8999999999999 99999999999999999999999999984 6777889999999999999
Q ss_pred EEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCC
Q 024919 83 CCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHG 157 (260)
Q Consensus 83 ~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G 157 (260)
|++||..+|++.+++++|.+++.|++.++++++++.+++++++.++.+ .|||++++|+||||++||+||.+||+|
T Consensus 78 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G 157 (241)
T PRK03996 78 AASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSG 157 (241)
T ss_pred EEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCC
Confidence 999999999999999999999999999999999999999999987644 469999999999998889999999999
Q ss_pred CccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--EEEeccccCCCC
Q 024919 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQLPNP 234 (260)
Q Consensus 158 ~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g--~~~~~~~~~~~~ 234 (260)
++.+++++|+|+|+..++++|++.|+++|+++||++++++||+.+.++ ..+++.++|++++++| .+.+.+.++...
T Consensus 158 ~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~ 235 (241)
T PRK03996 158 AYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKY 235 (241)
T ss_pred CeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 5578999999999987 666666665443
No 5
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-51 Score=356.77 Aligned_cols=216 Identities=32% Similarity=0.420 Sum_probs=206.0
Q ss_pred ccccCchhhHHHhhcCCCCCCccccCC-ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHH
Q 024919 14 FSFDLCRRNDMLSKKGIVPPPSYRKTG-TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (260)
Q Consensus 14 ~~fsp~Gr~~Qveya~~~~~~~a~~~G-~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 92 (260)
..|||+||++|+||| .+++.+| +|+|||+++||||||+|+|.++|.++..++.+|||+|+||++|++||+.+|+
T Consensus 8 ~~fsp~g~l~q~e~a-----~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa 82 (236)
T COG0638 8 TIFSPEGRLFQVEYA-----LEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADA 82 (236)
T ss_pred eeECCCCchHHHHHH-----HHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhH
Confidence 469999999999999 9998876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc---CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 93 EAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 93 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~---~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+.+++++|.+++.|++.++++++++.+++++++.+|.++ |||++++|+||+|+++|+||++||+|++.+++++|+|+
T Consensus 83 ~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gs 162 (236)
T COG0638 83 QVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGS 162 (236)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcC
Confidence 999999999999999999999999999999999999876 69999999999998779999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeC-CCEEEeccccCCCC
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK-GDKEYLRNHQLPNP 234 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk-~g~~~~~~~~~~~~ 234 (260)
|+..++++||+.|+++|++|||++++++||+.+.+||..++++++|+++++ +|.+.+++.++...
T Consensus 163 gs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~ 228 (236)
T COG0638 163 GSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKL 228 (236)
T ss_pred CcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHH
Confidence 999999999999999999999999999999999999998889999999999 78888888776643
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.6e-51 Score=353.21 Aligned_cols=202 Identities=29% Similarity=0.375 Sum_probs=192.8
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||..+|++.
T Consensus 9 ~f~p~Grl~Qieya-----~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 82 (224)
T TIGR03633 9 VFSPDGRLYQVEYA-----REAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARV 82 (224)
T ss_pred eECCCCeEeHHHHH-----HHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHH
Confidence 49999999999999 9999999999999999999999999998 46777889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+.+++|.++..|++.+++.++++.+++++++.++.+ .|||++++|+||+|+++|+||.+||.|++.+++++++|+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~ 162 (224)
T TIGR03633 83 LIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGA 162 (224)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEECC
Confidence 999999999999999999999999999999988654 469999999999998889999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
++.+++++|++.|+++|+++||++++++||+.+.+ |..+++.++|++|+++|.
T Consensus 163 g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~ 215 (224)
T TIGR03633 163 GRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDK 215 (224)
T ss_pred CCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCC
Confidence 99999999999999999999999999999999887 888899999999999984
No 7
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-51 Score=348.57 Aligned_cols=198 Identities=19% Similarity=0.189 Sum_probs=186.5
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
.|||||||+||||| ++|+++|+|+|||+++||||||+|+|.++ .++..++.+|||+|++|++|+++|..+|++.
T Consensus 10 ~fsp~Grl~Qveya-----~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 83 (212)
T cd03751 10 TFSPDGRVFQVEYA-----NKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRH 83 (212)
T ss_pred eECCCCcchHHHHH-----HHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHH
Confidence 38999999999999 99999999999999999999999999986 6666778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++++|.+++.|++.++++++++.++++|++.++.+ .|||++++|++|||++||+||.+||+|++.+++++|+|+
T Consensus 84 l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~ 163 (212)
T cd03751 84 LVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGK 163 (212)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEECC
Confidence 999999999999999999999999999999876543 479999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
|+..++++||+.|+++||++||+++++++|+.+.+.+...+.++||.++
T Consensus 164 g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 164 GKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred CCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999866667788998764
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-50 Score=347.55 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=188.9
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||||||+||||| ++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++|++||..+|++.
T Consensus 9 ~fsp~Grl~Qveya-----~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 83 (213)
T cd03752 9 IFSPEGRLYQVEYA-----MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANI 83 (213)
T ss_pred eECCCCEEhHHHhH-----HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHH
Confidence 49999999999999 9999999999999999999999999999877776779999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEc
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMG 168 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG 168 (260)
+.+++|.+++.|+++++++++++.+++.++..++.+ .|||++++|++|||+ .||+||.+||+|++.+++++|+|
T Consensus 84 l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G 163 (213)
T cd03752 84 LINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIG 163 (213)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEEC
Confidence 999999999999999999999999999998776433 479999999999995 68999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 169 SGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 169 ~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
+++.+++++||+.|+++||++||++++.+||+.+.+|+..++.+++|.++
T Consensus 164 ~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 164 NNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999888999999875
No 9
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.5e-50 Score=342.92 Aligned_cols=197 Identities=21% Similarity=0.220 Sum_probs=185.6
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
.|||+|||+||||| ++|+++|+|+|||+++||||||+|+|.+.+ + .+..+|||+|+++++|++||+.+|++.
T Consensus 7 ~fsp~Grl~Qveya-----~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 7 TWSPQGRLFQVEYA-----MEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred eECCCCeEeHHHHH-----HHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHH
Confidence 59999999999999 999999999999999999999999998764 3 456799999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+.+++|.+++.|+++++++++++.+|+.+++.++.+ .|||++++|++|||++||+||.+||+|++.+++++|+|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~ 158 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGA 158 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECC
Confidence 999999999999999999999999999999877642 479999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEe
Q 024919 170 GSLAAMAVFESKYR--EGLTKEEGISLVCEAICSGIFNDL-GSGSNVDICVIT 219 (260)
Q Consensus 170 g~~~~~~~Le~~~~--~~~s~~eai~l~~~al~~a~~~d~-~~~~~iei~iit 219 (260)
|+..++++||+.|+ ++||++||+++++++|+.++.+|. .+++++||++++
T Consensus 159 g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 159 RSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999 599999999999999999999886 789999999984
No 10
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-50 Score=341.02 Aligned_cols=196 Identities=19% Similarity=0.273 Sum_probs=184.6
Q ss_pred ccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHH
Q 024919 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (260)
Q Consensus 14 ~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~ 93 (260)
.+|||+|||+||||| ++|+++|+|+|||+++||||||+|++.+. .++..+..+||++|++|++|++||+.+|++
T Consensus 6 ~~fsp~Gr~~Qveya-----~~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 6 TVFSPDGHLFQVEYA-----QEAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred ceECCCCeEeHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 369999999999999 99999999999999999999999998765 577777899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEE
Q 024919 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (260)
Q Consensus 94 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~ai 167 (260)
.+.+++|.+++.|++.++++++++.+++++++.++.+ .|||++++|++|||+ ++|+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 9999999999999999999999999999999988654 369999999999996 5899999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 168 G~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
|+|+.+++++||+.|+++||.+||++++++||..+.+ .++.++||+++
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999999999999999986 56789999875
No 11
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-49 Score=340.66 Aligned_cols=198 Identities=27% Similarity=0.388 Sum_probs=188.8
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
.|||+|||+||||| .+++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||+.+|++.
T Consensus 8 ~fsp~G~l~Q~eya-----~~av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 81 (211)
T cd03756 8 VFSPDGRLYQVEYA-----REAVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARV 81 (211)
T ss_pred eECCCCeEhHHHHH-----HHHHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 59999999999999 99999999999999999999999999974 6777889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+.++++.+++.|++.++++++++.+++++++.++.+ .|||++++|+||||+++|+||.+||.|++.+++++++|+
T Consensus 82 l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~ 161 (211)
T cd03756 82 LIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGS 161 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECC
Confidence 999999999999999999999999999999887543 369999999999999899999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT 219 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iit 219 (260)
|+..++++||+.|+++|+++||++++++||+.+.+++. ++++++|++|+
T Consensus 162 g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 162 GRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999999999999999999999998776 89999999987
No 12
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-49 Score=339.99 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=186.5
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
.|||||||+||||| ++++++|+|+|||+++||||||+|+|.++ .++..++.+||++|+++++|++||+.+|++.
T Consensus 7 ~f~p~G~~~Q~eya-----~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 7 TFSPEGRLFQVEYA-----IEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred cCCCCCeEhHHHHH-----HHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 59999999999999 99999999999999999999999999986 5666788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc----------cCccceEEEEEEEeCCCCEEEEEcCCCCccccCe
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----------QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPF 164 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~----------~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~ 164 (260)
+.+.+|.+++.|++.++++++++.+++++++.++++ .|||++++|+||||++||+||.+||+|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 999999999999999999999999999999988754 2799999999999998999999999999999999
Q ss_pred EEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 165 ATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 165 ~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
+|+|+++..+.++|++.|+++||++||++++++||+.+.+++ .+++++||++|
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 999999999999999999999999999999999999988765 67899999875
No 13
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=6.8e-49 Score=335.63 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=187.9
Q ss_pred ccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHH
Q 024919 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (260)
Q Consensus 14 ~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~ 93 (260)
..|||||||+||||| ++++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||..+|++
T Consensus 6 ~~f~~~G~~~q~eya-----~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 6 TTFSPEGRLFQVEYA-----LEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred ccCCCCCEEeHHHHH-----HHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 359999999999999 99999999999999999999999999986 466678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCC-CCEEEEEcCCCCccccCeEEE
Q 024919 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATM 167 (260)
Q Consensus 94 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~ai 167 (260)
.+.+.++..+..|++.++++++++.+|+++++.++.+ .|||++++|++|||++ ||+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 9999999999999999999999999999999988543 3699999999999975 899999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 168 G~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
|+|+.+++++|++.|+++||.+||++++.+||+.+.++|. +++.++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999999998 9999999875
No 14
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.8e-49 Score=336.32 Aligned_cols=197 Identities=17% Similarity=0.224 Sum_probs=183.0
Q ss_pred cccCchhhHHHhhcCCCCCCccccC-CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~-G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~ 93 (260)
+|||+|||+||||| ++|+++ |+|+|||+++||||||+|+|.+. .++..++.+|||+|+++++|++||+.+|++
T Consensus 8 ~fsp~Grl~Qveya-----~~a~~~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~ 81 (215)
T cd03754 8 IFSPEGRLYQVEYA-----FKAVKNAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSR 81 (215)
T ss_pred eECCCCeEeHHHhH-----HHHHhcCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHH
Confidence 59999999999999 999875 78999999999999999999986 465666889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhh-----ccCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEE
Q 024919 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFK-----YQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (260)
Q Consensus 94 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~-----~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~ai 167 (260)
.+.+++|.++..|+++++++++++.+|+++++.++. ..|||++++|+||||+ +||+||.+||+|++.+++++|+
T Consensus 82 ~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~ 161 (215)
T cd03754 82 SQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAA 161 (215)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEE
Confidence 999999999999999999999999999999987542 2369999999999996 6899999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCC--C--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 168 GSGSLAAMAVFESKYREG--L--TKEEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 168 G~g~~~~~~~Le~~~~~~--~--s~~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
|+|+..++++||+.|+++ | |++||++++++||+.+.+||.. ++.+||.++
T Consensus 162 G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 162 GVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 999999999999999985 7 9999999999999999999965 899999874
No 15
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-45 Score=305.89 Aligned_cols=189 Identities=76% Similarity=1.218 Sum_probs=184.1
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++|+++|..+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999899899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~ 200 (260)
++++++++.++.||++++|+||||++||+||.+||+|++.+++++++|+++.+++++|++.|+++||++||++++++||+
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~ 160 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIE 160 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 99999999888899999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEEEeCCCEEEeccc
Q 024919 201 SGIFNDLGSGSNVDICVITKGDKEYLRNH 229 (260)
Q Consensus 201 ~a~~~d~~~~~~iei~iitk~g~~~~~~~ 229 (260)
.+.+||+.++++++|++|+++|+++.+|+
T Consensus 161 ~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 161 AGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 99999999999999999999999988875
No 16
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-44 Score=304.93 Aligned_cols=186 Identities=30% Similarity=0.415 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|+++|+.+|++.+++++|.+++.|++.++++++++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (260)
Q Consensus 121 ~~l~~~~~~~~-~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al 199 (260)
+++++++|.++ .||++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.+||
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l 160 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAI 160 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999875 48999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeCCCEEEe
Q 024919 200 CSGIFNDLGSGSNVDICVITKGDKEYL 226 (260)
Q Consensus 200 ~~a~~~d~~~~~~iei~iitk~g~~~~ 226 (260)
+.+.+||..+++.++|++|+++|++.+
T Consensus 161 ~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 161 YHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 999999999999999999999998653
No 17
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-44 Score=305.28 Aligned_cols=190 Identities=25% Similarity=0.346 Sum_probs=180.1
Q ss_pred CCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHH-HhhhhcCCCCCHH
Q 024919 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQ-LHRYHTGRESRVV 117 (260)
Q Consensus 39 ~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~~~~i~~~ 117 (260)
+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++|+++|..+|++.+++++|.+++ .+++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999998899999999999999999999999999999999999999986 5778899999999
Q ss_pred HHHHHHHHHHhhc---cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCC--CCCHHHH
Q 024919 118 TALTLLKSHLFKY---QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE--GLTKEEG 191 (260)
Q Consensus 118 ~la~~l~~~~~~~---~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~~ea 191 (260)
.+++++++++|.+ .|||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||++||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 9999999998754 379999999999997 789999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEecc
Q 024919 192 ISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRN 228 (260)
Q Consensus 192 i~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~ 228 (260)
++++.+||+.+.+||..++++++|++|+++|++...|
T Consensus 161 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 161 RALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 9999999999999999999999999999999876554
No 18
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-44 Score=303.16 Aligned_cols=188 Identities=22% Similarity=0.290 Sum_probs=178.1
Q ss_pred CCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 024919 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVT 118 (260)
Q Consensus 39 ~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 118 (260)
+|+|+|||+++||||||+|+|.+++.++..++.+|||+|++|++|++||..+|++.+++++|.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999987777778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-cCccceEEEEEEEeC-CCCEEEEEcCCCCccccC-eEEEcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 024919 119 ALTLLKSHLFKY-QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLV 195 (260)
Q Consensus 119 la~~l~~~~~~~-~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~ 195 (260)
+|+++++.+|.. .+||++++|+||||+ .+|+||.+||+|++.+++ ++|+|+|+..++++||+.|+++||.+||++++
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 161 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETI 161 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 999999998765 479999999999996 459999999999998877 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCCCEEEe
Q 024919 196 CEAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (260)
Q Consensus 196 ~~al~~a~~~d~~~~~~iei~iitk~g~~~~ 226 (260)
++||+.+.+||..++++++|++|+++|++..
T Consensus 162 ~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 162 SQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred HHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 9999999999999999999999999998643
No 19
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-44 Score=306.68 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=183.2
Q ss_pred CccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCC
Q 024919 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (260)
Q Consensus 34 ~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~ 113 (260)
.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|++||..+|++.+.+++|.+++.|++.++++
T Consensus 2 ~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 2 SPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 56788999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcc-CccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcC--------
Q 024919 114 SRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYR-------- 183 (260)
Q Consensus 114 i~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~-------- 183 (260)
++++.+++++++.+|..+ +||++++|+||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 999999999999998654 59999999999996 45999999999999999999999999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEe
Q 024919 184 -EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (260)
Q Consensus 184 -~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~ 226 (260)
++||++||++++++||+.+.+||..+++.++|++|+++|++..
T Consensus 162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 8999999999999999999999999999999999999998543
No 20
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5e-44 Score=299.94 Aligned_cols=184 Identities=35% Similarity=0.524 Sum_probs=178.8
Q ss_pred CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 40 G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..+|++.+.+++|.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 024919 120 LTLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (260)
Q Consensus 120 a~~l~~~~~~~~-~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~a 198 (260)
++++++.++.++ |||++++|+||||++||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~ 160 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRA 160 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 999999998764 7999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 199 ICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 199 l~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
|+.+.+||..++++++|++|+++|+
T Consensus 161 l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 161 IKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999984
No 21
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-45 Score=303.43 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=194.5
Q ss_pred CCCCCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEE
Q 024919 9 PPKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYC 83 (260)
Q Consensus 9 ~~~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~ 83 (260)
.|++||| |||+||+|||||| +||+.+++|||||+|+|||||++++-+++ ++...+...|||.|++||+|
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA-----~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~ 76 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYA-----QKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGM 76 (254)
T ss_pred cccccccccceeeCCCCceehHHHH-----HHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccE
Confidence 3678887 7799999999999 99999999999999999999999999987 67778899999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCC
Q 024919 84 CGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGS 158 (260)
Q Consensus 84 ~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~ 158 (260)
+++|+.+|.+.+..++|.++..|+.+|+.++|...++.++.+.++.+ -||||++.++++||.+||+||++||+|.
T Consensus 77 avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~ 156 (254)
T KOG0184|consen 77 AVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGS 156 (254)
T ss_pred EEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCC
Confidence 99999999999999999999999999999999999999999887643 4899999999999999999999999999
Q ss_pred ccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeC--CCEE
Q 024919 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK--GDKE 224 (260)
Q Consensus 159 ~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk--~g~~ 224 (260)
...++.+|+|.|.+.+++.||+.--.+|+.+|+++.+.+.|..+.+......-.+|+.++.. +|.+
T Consensus 157 ~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h 224 (254)
T KOG0184|consen 157 SYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLH 224 (254)
T ss_pred ccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcc
Confidence 99999999999999999999999888999999999999999988877777677889988864 4543
No 22
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-44 Score=301.40 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=178.3
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++|++||..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc---cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 024919 121 TLLKSHLFKY---QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (260)
Q Consensus 121 ~~l~~~~~~~---~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 196 (260)
+++++.++.+ +|||++++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 9999988643 369999999999996 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCEEEe
Q 024919 197 EAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (260)
Q Consensus 197 ~al~~a~~~d~~~~~~iei~iitk~g~~~~ 226 (260)
+||+.+.+||..++++++|.+|+++|++.+
T Consensus 162 ~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 162 KCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 999999999999999999999999998754
No 23
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-44 Score=301.59 Aligned_cols=253 Identities=66% Similarity=1.068 Sum_probs=238.9
Q ss_pred CCCCCCCCCccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEE
Q 024919 5 NIGIPPKGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCC 84 (260)
Q Consensus 5 ~~~~~~~~g~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~ 84 (260)
.-.+|+++||+|..+-|.--++-. --.+.++.++|+|++|+.++||||+++|+|.+.|..+..++.+||+.|.++|+||
T Consensus 3 ~~~~~~r~gfsf~nc~rn~~l~~~-g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~Iycc 81 (271)
T KOG0173|consen 3 SPDLPPRGGFSFDNCQRNAALLKK-GLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCC 81 (271)
T ss_pred CCCCCccCCCChhhhhhHHHHHhc-CCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEc
Confidence 345788999999999998544433 2345788999999999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCccceEEEEEEEeCCCCEEEEEcCCCCccccCe
Q 024919 85 GAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPF 164 (260)
Q Consensus 85 ~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~ 164 (260)
.+|-++|...+.+.+..+++.|+++.++.+++-...++++|++++|++..++.+|++|+|..||+||.+-|.|+...-+|
T Consensus 82 GAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf 161 (271)
T KOG0173|consen 82 GAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPF 161 (271)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcCccce
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred EEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccc
Q 024919 165 ATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYS 244 (260)
Q Consensus 165 ~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~ 244 (260)
.+.|||+..+.++||..|+++|++|||++|+.+|+...+..|..+|.++++|||++.++++++++..++.+. +|...|.
T Consensus 162 ~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~-~r~~~y~ 240 (271)
T KOG0173|consen 162 TALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKG-ERTGRYK 240 (271)
T ss_pred eeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCc-cccceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred cCCCccceeeeeecc
Q 024919 245 FPKKTEGTCITKLFP 259 (260)
Q Consensus 245 ~~~~~~~~~~~~~~~ 259 (260)
.+.||+.-+-++.+|
T Consensus 241 ~~~gtT~VL~~~v~~ 255 (271)
T KOG0173|consen 241 FKPGTTAVLKEKVYP 255 (271)
T ss_pred eCCCceEEEeeeeee
Confidence 999999999999887
No 24
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=5.9e-44 Score=311.81 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=189.0
Q ss_pred cccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 024919 36 YRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR 115 (260)
Q Consensus 36 a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~ 115 (260)
.+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||+.+|++.+.+++|.+++.|++.++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccC-ccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHH
Q 024919 116 VVTALTLLKSHLFKYQG-HVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (260)
Q Consensus 116 ~~~la~~l~~~~~~~~~-p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l 194 (260)
++.+|+++++.+|.+|. |+.+++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l 194 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDL 194 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHH
Confidence 99999999999988742 34455899999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCC
Q 024919 195 VCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR 235 (260)
Q Consensus 195 ~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~ 235 (260)
+++||+.+.+||..++++++|++|+++|++.+++.++.++.
T Consensus 195 ~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l 235 (247)
T PTZ00488 195 GRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLH 235 (247)
T ss_pred HHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHH
Confidence 99999999999999999999999999999999998887663
No 25
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-43 Score=297.22 Aligned_cols=187 Identities=35% Similarity=0.505 Sum_probs=180.4
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (260)
Q Consensus 121 ~~l~~~~~~~~-~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al 199 (260)
+++++.+|.++ +||++++|+||||+++|+||.+||+|++.+++++|+|+|+.+++++|++.|+++|+++||++++++||
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l 160 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAI 160 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999998764 79999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeCCCEEEec
Q 024919 200 CSGIFNDLGSGSNVDICVITKGDKEYLR 227 (260)
Q Consensus 200 ~~a~~~d~~~~~~iei~iitk~g~~~~~ 227 (260)
+.+.+||..++++++|++++++|++.++
T Consensus 161 ~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 161 KSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred HHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 9999999999999999999999987653
No 26
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-43 Score=295.87 Aligned_cols=185 Identities=34% Similarity=0.556 Sum_probs=179.7
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al 199 (260)
+++++.++.+++||++++|+||+|+ +||+||.+||.|++.+++++++|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al 160 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999996 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeCCCEEE
Q 024919 200 CSGIFNDLGSGSNVDICVITKGDKEY 225 (260)
Q Consensus 200 ~~a~~~d~~~~~~iei~iitk~g~~~ 225 (260)
+.+.+||+.+++.++|++|+++|++.
T Consensus 161 ~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 161 SLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999853
No 27
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-45 Score=298.71 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=196.8
Q ss_pred ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHH
Q 024919 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (260)
Q Consensus 16 fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l 95 (260)
|||+|+|+||||| ++|+.+|+|+||++++|+|||+.+++... .+...+...||..+++|++++++|+.+|++.+
T Consensus 11 FSPDGhL~QVEYA-----qEAvrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDAril 84 (249)
T KOG0183|consen 11 FSPDGHLFQVEYA-----QEAVRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARIL 84 (249)
T ss_pred ECCCCCEEeeHhH-----HHHHhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceee
Confidence 9999999999999 99999999999999999999999998775 88888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCC-CEEEEEcCCCCccccCeEEEcC
Q 024919 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 96 ~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++.|-+|+.|+++...+++++.+.+++++..++| +||||+++|++|+|++| |.||.+||+|.+.+|++-|+|.
T Consensus 85 inrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr 164 (249)
T KOG0183|consen 85 INRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGR 164 (249)
T ss_pred hhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcccccc
Confidence 99999999999999999999999999999887765 48999999999999977 9999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCCC
Q 024919 170 GSLAAMAVFESKYREG--LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNP 234 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~--~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~~ 234 (260)
++..+..+||++|.++ .+..+++++++++|......+ +.++++.+++..+ .++++..++...
T Consensus 165 ~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l~~~~I~~~ 229 (249)
T KOG0183|consen 165 SSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKMLESEEIDDI 229 (249)
T ss_pred ccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeecCHHHHHHH
Confidence 9999999999999876 788999999999998888654 6899999999987 899988877654
No 28
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=294.28 Aligned_cols=209 Identities=20% Similarity=0.236 Sum_probs=193.2
Q ss_pred CCCccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChH
Q 024919 11 KGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAA 90 (260)
Q Consensus 11 ~~g~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 90 (260)
+.-..||||||++||||| ++++.+.+|+|||.++||||||++++.++.-+-.....+||++|+|+++|+.+|+.+
T Consensus 7 srttiFspEGRLyQVEyA-----meais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~ 81 (249)
T KOG0178|consen 7 SRTTIFSPEGRLYQVEYA-----MEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTS 81 (249)
T ss_pred CcccccCCCcchHHHHHH-----HHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccc
Confidence 445679999999999999 999999999999999999999999999874444456789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhh---c--cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCe
Q 024919 91 DTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFK---Y--QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPF 164 (260)
Q Consensus 91 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~---~--~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~ 164 (260)
|+..|+.++|..++.|.++|++++|++.|++.+++..+. | .||||||+|.+|||+ .|.+||+.||+|++..|++
T Consensus 82 DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 82 DANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccce
Confidence 999999999999999999999999999999999888754 3 389999999999997 5789999999999999999
Q ss_pred EEEcCChHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEE
Q 024919 165 ATMGSGSLAAMAVFESKYREGL-TKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKE 224 (260)
Q Consensus 165 ~aiG~g~~~~~~~Le~~~~~~~-s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~ 224 (260)
.++|.++..++..|...|+++. +++||..+|++.|..+++....+.+.+|+..++++..+
T Consensus 162 ~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k 222 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNK 222 (249)
T ss_pred eeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCc
Confidence 9999999999999999999765 59999999999999999999999999999999998643
No 29
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-45 Score=296.26 Aligned_cols=214 Identities=19% Similarity=0.280 Sum_probs=202.7
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|+|.|+||| +.|+.+|.+.|||+..||||||++++..+ .+....+..|+++|.+||+|.+||+.+|++.
T Consensus 12 tFSpsGKL~QieyA-----L~Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~Rv 85 (233)
T KOG0181|consen 12 TFSPSGKLVQIEYA-----LTAVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRV 85 (233)
T ss_pred EEcCCCceehHHHH-----HHHHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceee
Confidence 58999999999999 99999999999999999999999998776 7888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc-----CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~-----~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++..|+.++.|...|++++++..+++.++..+++|. ||||+++++||||+.+|.||++||+|+++.|+++|+|.
T Consensus 86 lV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gk 165 (233)
T KOG0181|consen 86 LVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGK 165 (233)
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhcc
Confidence 9999999999999999999999999999999998763 79999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCC
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR 235 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~ 235 (260)
+...++.+||+.|++++.+++++..|+..|++..+-.. +.+++||.++..++.+.+++.+|+.+.
T Consensus 166 n~v~aktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~lt~~eI~d~l 230 (233)
T KOG0181|consen 166 NYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRRLTPAEIEDYL 230 (233)
T ss_pred CcchHHHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceeecCHHHHHHHH
Confidence 99999999999999999999999999999999987765 479999999999999999998887653
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-43 Score=301.96 Aligned_cols=206 Identities=18% Similarity=0.276 Sum_probs=187.9
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEec----CcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCC-CCC
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMA----PNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR-ESR 115 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~----~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~-~i~ 115 (260)
|.+|||+++||||||+|+|.+.+ ++..++.+|||+|+ +|++|+.||..+|++.+++++|.+++.|++.+++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 46899999999999999999875 44445789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhh----c-------cCccceEEEEEEEeC-CCCEEEEEcCCCCcccc----CeEEEcCChHHHHHHHH
Q 024919 116 VVTALTLLKSHLFK----Y-------QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTL----PFATMGSGSLAAMAVFE 179 (260)
Q Consensus 116 ~~~la~~l~~~~~~----~-------~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~----~~~aiG~g~~~~~~~Le 179 (260)
++.+|+++++++++ + .|||+|++|+||||+ .||+||.+||+|++.++ +|+|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999887543 2 379999999999994 78999999999999998 5689996 799999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccccCCC
Q 024919 180 SKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPKK 248 (260)
Q Consensus 180 ~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (260)
+.|+++||++||++++++||+.+++||..++++++|++|+++|.+......++.+.+|.++..-+|+.+
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIRKAWSEA 227 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999989999999999988777777543
No 31
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.2e-42 Score=296.44 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=182.8
Q ss_pred CCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 024919 39 TGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVT 118 (260)
Q Consensus 39 ~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 118 (260)
+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc----cCccceEEEEEEEeC--CCCEEEEEcCCC-CccccCeEEEcCChHHHHHHHHhhcCCCCCHHHH
Q 024919 119 ALTLLKSHLFKY----QGHVQAALVLGGVDA--TGPHLHTIYPHG-STDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191 (260)
Q Consensus 119 la~~l~~~~~~~----~~p~~v~~ivaG~D~--~gp~Ly~iDp~G-~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 191 (260)
++++++++++.+ .|||++++|+||||+ ++|+||.+||+| ++.+++++|+|+|+.+++++||+.|+++||.+||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999888643 579999999999995 469999999999 5778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCc-------EEEEEEeCCCEEEeccccCCCC
Q 024919 192 ISLVCEAICSGIFNDLGSGSN-------VDICVITKGDKEYLRNHQLPNP 234 (260)
Q Consensus 192 i~l~~~al~~a~~~d~~~~~~-------iei~iitk~g~~~~~~~~~~~~ 234 (260)
++++++||+.+.++|..+++. ++|++++++|++.+++.+++..
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~ 210 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEEL 210 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHH
Confidence 999999999999999866664 3999999999999988887654
No 32
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-41 Score=286.41 Aligned_cols=185 Identities=44% Similarity=0.631 Sum_probs=178.8
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|+++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-ccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQG-HVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (260)
Q Consensus 121 ~~l~~~~~~~~~-p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~a 198 (260)
+++++.+|.+++ ||++++|+||+|+ ++|+||.+||.|++.+++++++|+++.+++++|++.|+++||++||++++.+|
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 999999998775 9999999999997 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCEEE
Q 024919 199 ICSGIFNDLGSGSNVDICVITKGDKEY 225 (260)
Q Consensus 199 l~~a~~~d~~~~~~iei~iitk~g~~~ 225 (260)
|+.+.++|+.++++++|++|+++|++.
T Consensus 161 l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 161 IDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 999999999999999999999999865
No 33
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.9e-41 Score=291.60 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=177.7
Q ss_pred HhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHH
Q 024919 25 LSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQ 104 (260)
Q Consensus 25 veya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~ 104 (260)
=||| ++|+++|+|+|||+++||||||+|++. ++.+|||+|+||++|+++|+.+|++.++++.+.+++
T Consensus 17 ~EYA-----~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~ 83 (228)
T TIGR03691 17 AELA-----RKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYAD 83 (228)
T ss_pred HHHH-----HHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4999 999999999999999999999999962 357899999999999999999999999999999999
Q ss_pred HhhhhcC-CCCCHHHHHHHHHHHHhh----ccCccceEEEEEEEeC--CCCEEEEEcCCCCccccC-eEEEcCChHHHHH
Q 024919 105 LHRYHTG-RESRVVTALTLLKSHLFK----YQGHVQAALVLGGVDA--TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMA 176 (260)
Q Consensus 105 ~~~~~~~-~~i~~~~la~~l~~~~~~----~~~p~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~~~~ 176 (260)
.|++.++ .+++++.+|+.+++.+.. ..|||+|++|++|||+ .||+||.+||+|++.+++ ++|+|+|+..+++
T Consensus 84 ~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~ 163 (228)
T TIGR03691 84 MRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIAT 163 (228)
T ss_pred HHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHH
Confidence 9999998 689999999988887643 3589999999999984 679999999999999976 8999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHH--hhcCCCCCcEEEEEEeCCC----EEEeccccCCC
Q 024919 177 VFESKYREGLTKEEGISLVCEAICSGI--FNDLGSGSNVDICVITKGD----KEYLRNHQLPN 233 (260)
Q Consensus 177 ~Le~~~~~~~s~~eai~l~~~al~~a~--~~d~~~~~~iei~iitk~g----~~~~~~~~~~~ 233 (260)
+||+.|+++||++||++++++||+.+. +++..++.++||.++++++ .+.+++.++..
T Consensus 164 ~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~ 226 (228)
T TIGR03691 164 ALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALER 226 (228)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHh
Confidence 999999999999999999999999995 4656788999999999764 77777776654
No 34
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-41 Score=278.64 Aligned_cols=212 Identities=23% Similarity=0.265 Sum_probs=194.1
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++|++.|++.||++.++..||++-+|..+ .+ .+.++|||+|++|++++++|+.+|++.
T Consensus 12 ~wsPqGrl~QvEya-----~EavkqGsatVGLks~thaVLvAl~r~~s-eL--ss~QkKi~~iD~h~g~siAGLt~Darv 83 (264)
T KOG0863|consen 12 TWSPQGRLHQVEYA-----MEAVKQGSATVGLKSRTHAVLVALKRAQS-EL--SSHQKKIFKIDDHIGISIAGLTADARV 83 (264)
T ss_pred EECCcceehHHHHH-----HHHHhcccceEeecccceEEEeeeccchh-HH--HHhhheeEecccccceEEeccCcchHH
Confidence 49999999999999 99999999999999999999999888775 33 567899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhh----c-cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFK----Y-QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~----~-~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+.+++|.+|..++..+++++++..++..|.+.++. + +|||||.++++|||+.||+||.++|+|++.+++..+||+
T Consensus 84 l~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGs 163 (264)
T KOG0863|consen 84 LSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGS 163 (264)
T ss_pred HHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeeccc
Confidence 99999999999999999999999999988877752 2 689999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEeCCC-EEEeccccCCCC
Q 024919 170 GSLAAMAVFESKYR--EGLTKEEGISLVCEAICSGIFND-LGSGSNVDICVITKGD-KEYLRNHQLPNP 234 (260)
Q Consensus 170 g~~~~~~~Le~~~~--~~~s~~eai~l~~~al~~a~~~d-~~~~~~iei~iitk~g-~~~~~~~~~~~~ 234 (260)
.++.++.+||++.. ++++.||.+..+++||+.+...| ..++.+++|+|+-|+. +++++...+.++
T Consensus 164 RSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~ 232 (264)
T KOG0863|consen 164 RSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKY 232 (264)
T ss_pred chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHH
Confidence 99999999999976 59999999999999999999744 6788999999999986 577777666544
No 35
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.4e-39 Score=270.05 Aligned_cols=178 Identities=36% Similarity=0.542 Sum_probs=171.5
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|..+.+++.+|||+|+++++|+++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998887788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc---CccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 024919 121 TLLKSHLFKYQ---GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (260)
Q Consensus 121 ~~l~~~~~~~~---~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 196 (260)
+++++.++.++ +||++++|+||+|+ ++|+||.+||.|++.+++++++|+++.+++++|++.|+++||.+||+++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 99999998776 79999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEE
Q 024919 197 EAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 197 ~al~~a~~~d~~~~~~iei~ii 218 (260)
+||+.+.++|..++.+++|++|
T Consensus 161 ~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 161 KALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999989999999875
No 36
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=3.1e-39 Score=271.13 Aligned_cols=182 Identities=31% Similarity=0.430 Sum_probs=167.8
Q ss_pred ccCCceEEEEEeCCEEEEEEcCCCcCCceeeecc-cCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 024919 37 RKTGTTIVGLIFQNGVILGADTRATAGSIVCDKN-CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR 115 (260)
Q Consensus 37 ~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~-~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~ 115 (260)
+++|+|+|||+++||||||+|+|.+.|+.+..++ .+|||+|++|++|++||..+|++.++++++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999999888886666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----Hh-hccCccceEEEEEEEeCCC-CEEEEEcCCCCcccc-CeEEEcCChHHHHHHHHhhcCCCCCH
Q 024919 116 VVTALTLLKSH----LF-KYQGHVQAALVLGGVDATG-PHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTK 188 (260)
Q Consensus 116 ~~~la~~l~~~----~~-~~~~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~ 188 (260)
++.+++.+.+. ++ .+.+|+++++|+||||+++ |+||.+||+|++.++ +++++|+|+.+++++|++.|+++||+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 99555554444 33 3368999999999999866 999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 189 EEGISLVCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 189 ~eai~l~~~al~~a~~~d~~~~~~iei~ii 218 (260)
+||++++++||+.+.++|..++++++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999986
No 37
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-40 Score=268.85 Aligned_cols=218 Identities=19% Similarity=0.230 Sum_probs=200.6
Q ss_pred CCCCcc-----ccCchhhHHHhhcCCCCCCccccC-CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEE
Q 024919 10 PKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYC 83 (260)
Q Consensus 10 ~~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~-G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~ 83 (260)
...||| |||||||+||||| ++|+++ |-|.||++++|++|+++.++... +++..+...++|+|+.+|+|
T Consensus 5 s~agfDrhitIFspeGrLyQVEYa-----fkAin~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~ 78 (246)
T KOG0182|consen 5 SSAGFDRHITIFSPEGRLYQVEYA-----FKAINQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGC 78 (246)
T ss_pred CcCCccceEEEECCCceEEeeehH-----HHHhhcCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceE
Confidence 467886 9999999999999 999998 88999999999999999999986 88888999999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCC
Q 024919 84 CGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHG 157 (260)
Q Consensus 84 ~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G 157 (260)
+++|..+|.+..++++|.++.++++.||.+|+++.||+.+.+.-+.+ .||+|+.+++.|+|+ .||.+|.+||.|
T Consensus 79 v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAG 158 (246)
T KOG0182|consen 79 VITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAG 158 (246)
T ss_pred EEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcc
Confidence 99999999999999999999999999999999999999887766533 589999999999997 679999999999
Q ss_pred CccccCeEEEcCChHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--EEEeccccCCC
Q 024919 158 STDTLPFATMGSGSLAAMAVFESKYREG--LTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQLPN 233 (260)
Q Consensus 158 ~~~~~~~~aiG~g~~~~~~~Le~~~~~~--~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g--~~~~~~~~~~~ 233 (260)
-+..+++++.|.....+.++||++|+++ .|.+|++++++.||..++.-|.. ...+||.+++++. .++++..+++.
T Consensus 159 yy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls~~eie~ 237 (246)
T KOG0182|consen 159 YYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILSAEEIEE 237 (246)
T ss_pred ccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeeccHHHHHH
Confidence 9999999999999999999999999987 67999999999999999988865 5789999999876 67888777665
Q ss_pred C
Q 024919 234 P 234 (260)
Q Consensus 234 ~ 234 (260)
-
T Consensus 238 h 238 (246)
T KOG0182|consen 238 H 238 (246)
T ss_pred H
Confidence 3
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-38 Score=258.10 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=191.1
Q ss_pred CccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHH
Q 024919 13 GFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (260)
Q Consensus 13 g~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 92 (260)
|..-.|.++.-+.+-. .+.++..+|+|+|||++.|++|+|+|+|.++|..|.++...|||+++|+++++.||..+|+
T Consensus 5 g~~~~~~~~s~~~~~~---~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~ 81 (235)
T KOG0179|consen 5 GIESASGGSSKTMDHE---RFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADT 81 (235)
T ss_pred ceeecCCCccCccccc---cCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhH
Confidence 3333444555555555 2368889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc-CccceEEEEEEEeCCC-CEEEEEcCCCCccccCeEEEcCC
Q 024919 93 EAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGSG 170 (260)
Q Consensus 93 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~~~~aiG~g 170 (260)
..|...++..+..|+..+.+.|++.++|++|+..+|..| .||.+..|+||+|++| +.+|++||.|++.+..+.|-|++
T Consensus 82 l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa 161 (235)
T KOG0179|consen 82 LALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSA 161 (235)
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcc
Confidence 999999999999999999999999999999999998765 4999999999999977 89999999999999999999999
Q ss_pred hHHHHHHHHhhcC-----------CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEE
Q 024919 171 SLAAMAVFESKYR-----------EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (260)
Q Consensus 171 ~~~~~~~Le~~~~-----------~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~ 225 (260)
+.+++++|++... ..+|+|+|+.++..+|..|.+||+.+|+.++||+++++|++.
T Consensus 162 ~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 162 ASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred hhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 9999999997742 468999999999999999999999999999999999999853
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=253.50 Aligned_cols=198 Identities=32% Similarity=0.540 Sum_probs=187.7
Q ss_pred ccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCC
Q 024919 35 SYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES 114 (260)
Q Consensus 35 ~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i 114 (260)
..+..|+|++|+++++||||++|+|.+.|.++.++..+|+-+|.|+|+||-||.++|.|.+.+.++.++..|..++++++
T Consensus 14 ~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p 93 (224)
T KOG0174|consen 14 EEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP 93 (224)
T ss_pred cccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHH
Q 024919 115 RVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGIS 193 (260)
Q Consensus 115 ~~~~la~~l~~~~~~~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~ 193 (260)
++...|++++++.|+++..+.+.+||||||+ +|.++|.+--.|+..+.+++.-|||+.+++++++..||++||+||+++
T Consensus 94 ~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~ 173 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVR 173 (224)
T ss_pred hHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHH
Confidence 9999999999999999888889999999997 779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCCEE--EeccccCC
Q 024919 194 LVCEAICSGIFNDLGSGSNVDICVITKGDKE--YLRNHQLP 232 (260)
Q Consensus 194 l~~~al~~a~~~d~~~~~~iei~iitk~g~~--~~~~~~~~ 232 (260)
+..+|+..|+.||-.+|+.+.+.+|+++|++ +..+.+++
T Consensus 174 fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~ 214 (224)
T KOG0174|consen 174 FVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLG 214 (224)
T ss_pred HHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccc
Confidence 9999999999999999999999999999974 44444443
No 40
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-37 Score=257.19 Aligned_cols=227 Identities=21% Similarity=0.341 Sum_probs=205.3
Q ss_pred cccCchhhHHHhhcCC---CCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHH
Q 024919 15 SFDLCRRNDMLSKKGI---VPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAAD 91 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~---~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 91 (260)
+|.|.| -+++-|+. ..++....+|+++||++++||||||+|+..++|++...++.+||++|+|++++++||..+|
T Consensus 15 ~f~~~~--~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 15 TFYPSG--SLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred cCcCcc--chhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 466776 45555543 2345667799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hhcCCCCCHHHHHHHHHHHHhhcc---CccceEEEEEEEeCCC-CEEEEEcCCCCccccCeEE
Q 024919 92 TEAVTDMVSSQLQLHR-YHTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFAT 166 (260)
Q Consensus 92 ~~~l~~~~r~~~~~~~-~~~~~~i~~~~la~~l~~~~~~~~---~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~~~~a 166 (260)
+|.+.+.+.+...+.. +..++.+.++.++++|.+.+|+.| .|+...++|||+|++| |+|-.+|..|...+.+..|
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vA 172 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVA 172 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhh
Confidence 9999999988776543 666789999999999999999765 5999999999999855 9999999999999999999
Q ss_pred EcCChHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCcc-ccCCc
Q 024919 167 MGSGSLAAMAVFESKYR---EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTY-ISSKG 242 (260)
Q Consensus 167 iG~g~~~~~~~Le~~~~---~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~-~~~~~ 242 (260)
+|.|..++.++|++.|+ +++|.+||.+++.+||+....||+.+.+.++|.+||++|+++.+|+++...|++ ++-+|
T Consensus 173 TGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~fa~~~~g 252 (256)
T KOG0185|consen 173 TGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDFAETIKG 252 (256)
T ss_pred hhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchhhhhccc
Confidence 99999999999999998 579999999999999999999999999999999999999999999999999999 55666
Q ss_pred c
Q 024919 243 Y 243 (260)
Q Consensus 243 ~ 243 (260)
|
T Consensus 253 y 253 (256)
T KOG0185|consen 253 Y 253 (256)
T ss_pred c
Confidence 5
No 41
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=240.16 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=183.1
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
.+++||++.|+|++|+|+....+-++..++.+|+++|+++++++++|..+|+..+.+++...++.|+.++|.+++++.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc---cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 024919 121 TLLKSHLFKY---QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (260)
Q Consensus 121 ~~l~~~~~~~---~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 196 (260)
++.++.+..+ ++||.|++|+||+|+ .||.||.+|..|+..+.++++.|.++.+..++|++.|+++||.+||+.+..
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 9999999754 569999999999997 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCC
Q 024919 197 EAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (260)
Q Consensus 197 ~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~ 232 (260)
+|+.++.+|-.....++.+.+|+|+|.+.++.++..
T Consensus 162 KCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~~~ 197 (200)
T KOG0177|consen 162 KCVLELKKRLVINLPGFIVKIVDKDGIRKLDDINFI 197 (200)
T ss_pred HHHHHHHHhcccCCCCcEEEEEcCCCceeccccccc
Confidence 999999999998899999999999999887776654
No 42
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=240.45 Aligned_cols=198 Identities=27% Similarity=0.407 Sum_probs=188.8
Q ss_pred ccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 024919 37 RKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV 116 (260)
Q Consensus 37 ~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~ 116 (260)
..+|||.+|.+++.|||+|+|+|.+.|.+|.....+||.+|+++.+=+++|-++||+..-+.+..+|..|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCc-cceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 024919 117 VTALTLLKSHLFKYQGH-VQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195 (260)
Q Consensus 117 ~~la~~l~~~~~~~~~p-~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~ 195 (260)
...+++|++++++|++. +.+..++||||+.||.||.+|..|+-...+-.++|||+.+++++|++.|+.+||.+||..|+
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~ 227 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLA 227 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHH
Confidence 99999999999999863 66888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCC
Q 024919 196 CEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP 234 (260)
Q Consensus 196 ~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~ 234 (260)
++++..|..||..+|+.+.++.|+.+|-..+.+..+.+-
T Consensus 228 rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L 266 (285)
T KOG0175|consen 228 RRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSEL 266 (285)
T ss_pred HHHHHHHHhcccccCceEEEEEECCccceecCCccHHHH
Confidence 999999999999999999999999999777777766554
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=1.1e-32 Score=227.89 Aligned_cols=166 Identities=22% Similarity=0.244 Sum_probs=149.6
Q ss_pred CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEe-cCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 024919 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVT 118 (260)
Q Consensus 40 G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 118 (260)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.+.++++.+++.|+... .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 68999999999999999999999999999999999999 999999999999999999999999999988322 467
Q ss_pred HHHHHHHHH-hhccCccceEEEEEEEeCCCCEEEEEcCCCCcccc--CeEEEcCChHHHHHHHHhhcC-CCCCHHHHHHH
Q 024919 119 ALTLLKSHL-FKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKYR-EGLTKEEGISL 194 (260)
Q Consensus 119 la~~l~~~~-~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~~eai~l 194 (260)
++++++... +.+++|+.+++|++ |. |+||.+||.|+..+. ++.++|||+.++.++||+.|+ ++| ||+++
T Consensus 76 ~a~l~~~l~~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~l 148 (172)
T PRK05456 76 AVELAKDWRTDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEI 148 (172)
T ss_pred HHHHHHHHHhccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHH
Confidence 777765543 45567888999884 33 799999999999766 899999999999999999999 999 99999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEE
Q 024919 195 VCEAICSGIFNDLGSGSNVDICV 217 (260)
Q Consensus 195 ~~~al~~a~~~d~~~~~~iei~i 217 (260)
+++|++.|.+||..+++++++-.
T Consensus 149 a~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 149 AEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999999998864
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=3.7e-32 Score=223.59 Aligned_cols=165 Identities=21% Similarity=0.212 Sum_probs=146.4
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecC-cEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAP-NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+++|..+|++.+.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 689999999999999999999999999999999999999 999999999999999999999999999988663 55
Q ss_pred HHHHHHHH-hhccCccceEEEEEEEeCCCCEEEEEcCCCCcccc--CeEEEcCChHHHHHHHHhhcCCC-CCHHHHHHHH
Q 024919 120 LTLLKSHL-FKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKYREG-LTKEEGISLV 195 (260)
Q Consensus 120 a~~l~~~~-~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~-~s~~eai~l~ 195 (260)
+++++.++ +++++.+.+.++++++ ++||.+||.|+..+. ++.++|||+.+++++||..|+++ || +.+++
T Consensus 76 a~l~~~l~~~~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la 148 (171)
T cd01913 76 VELAKDWRTDRYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIA 148 (171)
T ss_pred HHHHHHHHhccCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHH
Confidence 66666554 4454445577777644 399999999999998 49999999999999999999995 99 55999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEE
Q 024919 196 CEAICSGIFNDLGSGSNVDICV 217 (260)
Q Consensus 196 ~~al~~a~~~d~~~~~~iei~i 217 (260)
++|++.|.+||+.+++++++..
T Consensus 149 ~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 149 RKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHhhCcccCCCEEEEe
Confidence 9999999999999999999864
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=1e-31 Score=220.94 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=147.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEe-cCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++|+.+|..+|++.+.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999999999999999999999 599999999999999999999999999988743 4777
Q ss_pred HHHHHHH-HhhccCccceEEEEEEEeCCCCEEEEEcCCCCcccc--CeEEEcCChHHHHHHHHhhc-CCCCCHHHHHHHH
Q 024919 120 LTLLKSH-LFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKY-REGLTKEEGISLV 195 (260)
Q Consensus 120 a~~l~~~-~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~aiG~g~~~~~~~Le~~~-~~~~s~~eai~l~ 195 (260)
++++++. .+++.+.+.+.+|++|+ ++||.+||.|++.+. ++.++|||+.++.++||..| +++|+ |++++
T Consensus 76 a~l~~~~~~~~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la 148 (171)
T TIGR03692 76 VELAKDWRTDRYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIA 148 (171)
T ss_pred HHHHHHHhhcccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHH
Confidence 8888875 24555455577777644 399999999999995 69999999999999999999 57777 99999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEE
Q 024919 196 CEAICSGIFNDLGSGSNVDICV 217 (260)
Q Consensus 196 ~~al~~a~~~d~~~~~~iei~i 217 (260)
.++++.|++||+.+|++++|..
T Consensus 149 ~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 149 REALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHhhCccCCCCEEEEe
Confidence 9999999999999999999864
No 46
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-29 Score=200.83 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=177.0
Q ss_pred cCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 024919 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVV 117 (260)
Q Consensus 38 ~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~ 117 (260)
.+|+++||++++|||.||+|.|.-........+.+|||+++|+++++.+|++.|++.+.++++.....|+++.++.|.++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 47999999999999999999998876666788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-CccceEEEEEEEeCC-CCEEEEEcCCCCccc-cCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHH
Q 024919 118 TALTLLKSHLFKYQ-GHVQAALVLGGVDAT-GPHLHTIYPHGSTDT-LPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (260)
Q Consensus 118 ~la~~l~~~~~~~~-~p~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l 194 (260)
.++++++..+|+.| +||-+..+|||+|++ .|+|+..|..|.... .+|++.|.++....+..|..|+|||..||..+.
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFet 165 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFET 165 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999776 699999999999974 499999999999885 699999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCEE
Q 024919 195 VCEAICSGIFNDLGSGSNVDICVITKGDKE 224 (260)
Q Consensus 195 ~~~al~~a~~~d~~~~~~iei~iitk~g~~ 224 (260)
+..+|.++.+||..+|....+.+|+|+++.
T Consensus 166 isQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 166 ISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred HHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 999999999999999999999999999864
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=4.6e-28 Score=196.09 Aligned_cols=160 Identities=30% Similarity=0.332 Sum_probs=152.9
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|++.+.+........+|+++++++++++++|..+|++.+.++++..++.|++.+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998777678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc--CccceEEEEEEEeCCCCEEEEEcCCCCcccc-CeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQ--GHVQAALVLGGVDATGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCE 197 (260)
Q Consensus 121 ~~l~~~~~~~~--~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~ 197 (260)
+.+++.++.++ +|+++++|+||+|+++|+||.+||.|++.+. .++++|+++..+.++|++.|+++++.+|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALK 160 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999998764 8999999999999888999999999999999 99999999999999999999999999999999999
Q ss_pred HHH
Q 024919 198 AIC 200 (260)
Q Consensus 198 al~ 200 (260)
+|+
T Consensus 161 ~l~ 163 (164)
T cd01901 161 ALK 163 (164)
T ss_pred HHh
Confidence 985
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.6e-15 Score=125.16 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=157.9
Q ss_pred CceEEEEEeCCEEEEEEcCCCcCCc-eeeecccCeeEEe---cCcEEE-EecCChHHHHHHHHHHHHHHHHhhhhcCCC-
Q 024919 40 GTTIVGLIFQNGVILGADTRATAGS-IVCDKNCEKIHYM---APNIYC-CGAGTAADTEAVTDMVSSQLQLHRYHTGRE- 113 (260)
Q Consensus 40 G~tvIgI~~~dgVvlaad~r~~~g~-~i~~~~~~KI~~I---~~~i~~-~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~- 113 (260)
.+.|||++...|.|+++|+|.+.|- .+ ...+|.|.- ++++++ +.+|..+-.|.+++.+.+..+......--.
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~i--stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~ 78 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYI--STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNI 78 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHH--HHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcc
Confidence 3679999999999999999999872 22 233444432 455544 559999999999998887775322111111
Q ss_pred CCHHHHHHH----HHHHHhhc-------cCccceEEEEEEEeCCC-CEEEEEcCCCCccc----cCeEEEcCChHHHHHH
Q 024919 114 SRVVTALTL----LKSHLFKY-------QGHVQAALVLGGVDATG-PHLHTIYPHGSTDT----LPFATMGSGSLAAMAV 177 (260)
Q Consensus 114 i~~~~la~~----l~~~~~~~-------~~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~----~~~~aiG~g~~~~~~~ 177 (260)
.+.-..+.+ .++++-+- .--|.|++|++|.=..+ |.||.+.|.|++.+ ..|.-+|. ..+.+++
T Consensus 79 ~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPi 157 (255)
T COG3484 79 PSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPI 157 (255)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchh
Confidence 122223333 33333211 12388999999986644 79999999999886 68999997 7788999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccccCCCc
Q 024919 178 FESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPKKT 249 (260)
Q Consensus 178 Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (260)
|++.+..+++++||.++++-+|...++.+..+|-++++.++.++...+.....+.+...|.++.--.|.+.+
T Consensus 158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri~edd~Y~a~ir~~W~~~l 229 (255)
T COG3484 158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRIREDDPYFAKIRSLWSSYL 229 (255)
T ss_pred hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEeccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999877666665543
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.3e-14 Score=115.89 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=134.8
Q ss_pred cCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecC-cEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 024919 38 KTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAP-NIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV 116 (260)
Q Consensus 38 ~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~ 116 (260)
.++|||++++-++-|+||+|.+++.|+.+...+..|+.+|.. +++.+++|..+|+..|.+.+...++.|.-+ -.
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~-----L~ 76 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD-----LF 76 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc-----HH
Confidence 368999999999999999999999999999999888888865 899999999999999999999999888632 13
Q ss_pred HHHHHHHHHHHh-hccCccceEEEEEEEeCCCCEEEEEcCCCCccc--cCeEEEcCChHHHHHHHHhhcCC-CCCHHHHH
Q 024919 117 VTALTLLKSHLF-KYQGHVQAALVLGGVDATGPHLHTIYPHGSTDT--LPFATMGSGSLAAMAVFESKYRE-GLTKEEGI 192 (260)
Q Consensus 117 ~~la~~l~~~~~-~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~-~~s~~eai 192 (260)
+..+.+.++... .+.|.+.+-+||+ +.-.+|-+...|-..+ .+..+||||..++++.....++. ++| |.
T Consensus 77 raavelaKdwr~Dk~lr~LEAmllVa----d~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~ 149 (178)
T COG5405 77 RAAVELAKDWRTDKYLRKLEAMLLVA----DKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AR 149 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHhhheeEe----CCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HH
Confidence 344444444332 2234456767776 3358888999998775 46999999999999998888764 666 66
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 024919 193 SLVCEAICSGIFNDLGSGSNVDICVIT 219 (260)
Q Consensus 193 ~l~~~al~~a~~~d~~~~~~iei~iit 219 (260)
+++.++|..+.+-++.+++++.|..+.
T Consensus 150 eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 150 EIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHHhhhheEEEecCCcEEEEEee
Confidence 788889998887777777777776554
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.75 E-value=1.2e-09 Score=59.51 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=13.5
Q ss_pred cccCchhhHHHhhc
Q 024919 15 SFDLCRRNDMLSKK 28 (260)
Q Consensus 15 ~fsp~Gr~~Qveya 28 (260)
+|||+|||+|||||
T Consensus 7 ~FSp~Grl~QVEYA 20 (23)
T PF10584_consen 7 TFSPDGRLFQVEYA 20 (23)
T ss_dssp SBBTTSSBHHHHHH
T ss_pred eECCCCeEEeeEee
Confidence 69999999999999
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.68 E-value=0.15 Score=42.76 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 024919 172 LAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (260)
Q Consensus 172 ~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g 222 (260)
+.+...|.+.|++.|+++++..+..++|+.+.......+..+++...++.-
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~~ 181 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKKE 181 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEecccc
Confidence 446667888899999999999999999999988877788899998877653
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.47 E-value=11 Score=32.86 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=89.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+.+|+-.++||.|+|.|+|.. ++-|.-.|...+-+.+ ..|+=-+-+.|+
T Consensus 2 tLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------YsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------YSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------hcCccccHHHHH
Confidence 678999999999999999743 2234455655555443 234434555666
Q ss_pred HHHHHHHhhc-----c---CccceEEEEEEEeCCC------CEEEEEc-------CCCCcc----c---cCeEEEcCChH
Q 024919 121 TLLKSHLFKY-----Q---GHVQAALVLGGVDATG------PHLHTIY-------PHGSTD----T---LPFATMGSGSL 172 (260)
Q Consensus 121 ~~l~~~~~~~-----~---~p~~v~~ivaG~D~~g------p~Ly~iD-------p~G~~~----~---~~~~aiG~g~~ 172 (260)
+.....--.. + +...-+++++-+...+ -.+|.+- -.|+-. . ..+.+.| ..
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~G--nk 128 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFG--NK 128 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEEC--cH
Confidence 6555432111 1 1222334444443321 2344322 122211 0 1233343 44
Q ss_pred H----HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 024919 173 A----AMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (260)
Q Consensus 173 ~----~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g 222 (260)
+ +..+|.++|.+.++++++.....++|..+...-...+..+++..+.++-
T Consensus 129 ~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~ 182 (293)
T COG4079 129 FTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNV 182 (293)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCc
Confidence 4 5566888899999999999999999999886666777888888877653
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=87.24 E-value=0.73 Score=36.30 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=40.1
Q ss_pred EEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHH
Q 024919 151 HTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (260)
Q Consensus 151 y~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l 194 (260)
..+|-+|.+.+.+|-..|.|+..+.+-+-..|-..+++|||..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 36788999999999999999999999999999999999998764
No 54
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=39.77 E-value=19 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=9.5
Q ss_pred ccCCccccCCCccceeeeee
Q 024919 238 ISSKGYSFPKKTEGTCITKL 257 (260)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~ 257 (260)
+|...|++|+||+.-|..+.
T Consensus 6 ~r~~~Ykf~~GTTaVL~e~V 25 (38)
T PF12465_consen 6 ERQGSYKFKRGTTAVLKEKV 25 (38)
T ss_dssp --SS-----TT-S-EEEEEE
T ss_pred ccccccccCCCceeeEEEEe
Confidence 57889999999999988776
No 55
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=38.24 E-value=26 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.4
Q ss_pred EcCChHHHHHHHHhhc-CCCCCHHHHHHHHHHH
Q 024919 167 MGSGSLAAMAVFESKY-REGLTKEEGISLVCEA 198 (260)
Q Consensus 167 iG~g~~~~~~~Le~~~-~~~~s~~eai~l~~~a 198 (260)
.|.....+...+.+.. .++++.++.++.+++.
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 4777788888888777 7899999988877653
No 56
>PRK09732 hypothetical protein; Provisional
Probab=37.89 E-value=91 Score=24.64 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 024919 184 EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (260)
Q Consensus 184 ~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g 222 (260)
+.+|++.|.+++..++..+.+. +-++.|.|+|..|
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G 39 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGG 39 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 4689999999999999988765 4689999999998
No 57
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=37.46 E-value=61 Score=25.16 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 185 GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 185 ~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
.+|+++|.+++..+++.+.++. -++-|.|++..|.
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGH 36 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-
T ss_pred CcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCC
Confidence 4789999999999999988753 4588999999984
No 58
>PF06243 PaaB: Phenylacetic acid degradation B; InterPro: IPR009359 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation [, ]. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [].; PDB: 3EGR_A.
Probab=36.71 E-value=56 Score=24.26 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccccCCCc
Q 024919 187 TKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPKKT 249 (260)
Q Consensus 187 s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (260)
+.+.|+..|+..+. .| ...+.|+++-.+-+...+|...+..+.=...|.||+|..=
T Consensus 28 d~e~Al~~Ar~~f~---rR----~~~~siWVVp~~~I~~~~p~~~~~~f~p~~dK~YR~~~~Y 83 (94)
T PF06243_consen 28 DPEMALQQARDVFT---RR----EEAVSIWVVPADAITASDPEEKESWFAPADDKTYRHPTFY 83 (94)
T ss_dssp SHHHHHHHHHHHCT---TT-----TT-EEEEEEGGG-EE------------------------
T ss_pred CHHHHHHHHHHHhc---cc----cCccEEEEEEHHHcccCCccccccccccCCCCcccCccee
Confidence 56677777665542 12 3579999999999988888888766666778888887754
No 59
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=34.93 E-value=54 Score=23.60 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEecccc
Q 024919 184 EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQ 230 (260)
Q Consensus 184 ~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~ 230 (260)
-.+|.+||.+.+++.|..... ++.=.+++++.+|+-+..|..
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~hp~~ 74 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAHPSN 74 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEESS-
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEcCCC
Confidence 469999999999999976643 334578889999998888763
No 60
>smart00463 SMR Small MutS-related domain.
Probab=33.75 E-value=74 Score=22.16 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEE
Q 024919 185 GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (260)
Q Consensus 185 ~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~ 225 (260)
.|+.+||+..+.+.|..+..... .-.+.+|+-.|.+-
T Consensus 8 G~~~~eA~~~l~~~l~~~~~~~~----~~~~~II~G~G~~s 44 (80)
T smart00463 8 GLTVEEALTALDKFLNNARLKGL----EQKLVIITGKGKHS 44 (80)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC----CceEEEEEcccCCC
Confidence 78999999999999988775432 14688888877543
No 61
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=28.45 E-value=1.6e+02 Score=23.56 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 024919 184 EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (260)
Q Consensus 184 ~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g 222 (260)
+.+|+++|.+++..++..+.+. +.++.+.+++..|
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G 40 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGG 40 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCC
Confidence 5789999999999999887653 6789999999998
No 62
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=28.18 E-value=1.5e+02 Score=23.92 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=44.2
Q ss_pred CEEE-EEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 024919 148 PHLH-TIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI 203 (260)
Q Consensus 148 p~Ly-~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~ 203 (260)
-.|| .+| .|.+....|-..|.+...+.+-+-..+-.+.|.+||+++.......+.
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4566 466 888888999999999988888888888889999999999855544444
No 63
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=27.87 E-value=2.4e+02 Score=25.00 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=40.8
Q ss_pred eEEEcCChHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 164 FATMGSGSLAAMAVFESK----YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 164 ~~aiG~g~~~~~~~Le~~----~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
..++|.|...++..+-.. .+..++.+||.+.+++-+..... ..+...-+..++++|.
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~ 247 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGE 247 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCC
Confidence 568999998888766543 34689999999888777654321 2345677888899884
No 64
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=26.68 E-value=3.4e+02 Score=23.83 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=39.7
Q ss_pred CeEEEcCChHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 163 PFATMGSGSLAAMAVFESK----YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 163 ~~~aiG~g~~~~~~~Le~~----~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
-..++|.|...++..+-.. .+..++.++|.+.+++-|... .+...-+..++++|.
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 3788999999988776644 356799999988877766532 234456778888874
No 65
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=24.37 E-value=45 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCc--------cccCchhhHHHhhcC
Q 024919 1 MDNANIGIPPKGGF--------SFDLCRRNDMLSKKG 29 (260)
Q Consensus 1 ~~~~~~~~~~~~g~--------~fsp~Gr~~Qveya~ 29 (260)
|||-.|..|-..|= .|||+|.-+.-.|-.
T Consensus 52 lDA~dit~Pyt~GALRGGtHvHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 52 LDAMDITPPYTPGALRGGTHVHVFSPDGSWLSFTYND 88 (122)
T ss_pred cchhcccCCCCCccccCCccceEECCCCCEEEEEecc
Confidence 68888888865543 399999766666653
No 66
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=21.35 E-value=1.9e+02 Score=22.16 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=42.6
Q ss_pred CEEE-EEcCC-CCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Q 024919 148 PHLH-TIYPH-GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIF 204 (260)
Q Consensus 148 p~Ly-~iDp~-G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~ 204 (260)
-.|| .+|.. |.+.+.+|.+.|..-..+..-+-..+-.+++++||.++..+-+...+.
T Consensus 38 i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 38 IRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 3455 68887 788899999999877777666666666789999998877666655553
No 67
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=21.13 E-value=3.7e+02 Score=23.88 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=39.1
Q ss_pred eEEEcCChHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 164 FATMGSGSLAAMAVFESK----YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 164 ~~aiG~g~~~~~~~Le~~----~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
..++|.|..+++..+-.. .+..+|.+||.+.++.-+.... +...-+..++++|.
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 678999999888776543 3568999999988776664322 34456777888884
No 68
>PRK15494 era GTPase Era; Provisional
Probab=20.59 E-value=4.1e+02 Score=24.15 Aligned_cols=63 Identities=8% Similarity=-0.005 Sum_probs=40.7
Q ss_pred CHHH-HHHHHHHHHhhccC---ccceEEEEEEEeCCCCEEEEEcCCCCcc--ccCeEEEcCChHHHHHH
Q 024919 115 RVVT-ALTLLKSHLFKYQG---HVQAALVLGGVDATGPHLHTIYPHGSTD--TLPFATMGSGSLAAMAV 177 (260)
Q Consensus 115 ~~~~-la~~l~~~~~~~~~---p~~v~~ivaG~D~~gp~Ly~iDp~G~~~--~~~~~aiG~g~~~~~~~ 177 (260)
+.+. ++..+++.++.+.+ ||.+.+.+-.|.+.......|+..=.+. .++...+|.+...++.+
T Consensus 231 ~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~iiiG~~g~~ik~i 299 (339)
T PRK15494 231 PMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTIILGKNGSKIKEI 299 (339)
T ss_pred CHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeEEEcCCcHHHHHH
Confidence 3443 45578887776643 9999999988975321223344322222 36899999999988865
Done!