Query 024919
Match_columns 260
No_of_seqs 121 out of 1107
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_B 20S proteasome; cell cy 100.0 1.3E-54 4.3E-59 375.4 19.4 213 15-234 11-228 (233)
2 1yar_A Proteasome alpha subuni 100.0 5.2E-54 1.8E-58 371.6 22.1 215 12-233 6-231 (233)
3 3nzj_H Proteasome component PU 100.0 5.4E-53 1.8E-57 370.7 28.6 247 11-259 1-248 (261)
4 1ryp_A 20S proteasome; multica 100.0 5.1E-54 1.7E-58 373.9 20.8 213 15-234 9-235 (243)
5 1iru_E 20S proteasome; cell cy 100.0 4.3E-53 1.5E-57 367.6 21.7 215 12-233 6-236 (241)
6 1ryp_G 20S proteasome; multica 100.0 6.7E-53 2.3E-57 367.1 22.6 212 15-232 10-232 (244)
7 1ryp_E 20S proteasome; multica 100.0 4.8E-53 1.6E-57 367.5 21.5 214 14-234 5-231 (242)
8 3h4p_A Proteasome subunit alph 100.0 2.8E-53 9.5E-58 373.4 18.9 220 9-236 7-238 (264)
9 1iru_C 20S proteasome; cell cy 100.0 1E-52 3.5E-57 369.4 21.9 216 15-235 11-237 (261)
10 1iru_G 20S proteasome; cell cy 100.0 5.8E-53 2E-57 369.6 19.9 223 9-237 2-238 (254)
11 1ryp_C 20S proteasome; multica 100.0 1.5E-52 5E-57 364.8 22.1 215 15-234 11-237 (244)
12 1ryp_D 20S proteasome; multica 100.0 2.2E-52 7.6E-57 363.1 23.0 212 15-234 8-230 (241)
13 1ryp_F 20S proteasome; multica 100.0 1.7E-52 5.7E-57 362.2 20.5 210 15-233 11-231 (233)
14 1iru_A 20S proteasome; cell cy 100.0 2.3E-52 7.7E-57 364.2 21.4 217 11-234 6-238 (246)
15 3nzj_F Proteasome component C1 100.0 2.8E-52 9.4E-57 370.7 21.2 215 9-229 3-233 (288)
16 1j2p_A Alpha-ring, proteasome 100.0 1.6E-51 5.5E-56 358.8 23.3 212 15-234 14-232 (246)
17 1iru_D 20S proteasome; cell cy 100.0 2E-52 7E-57 364.9 17.6 214 15-237 9-231 (248)
18 1iru_F 20S proteasome; cell cy 100.0 9E-52 3.1E-56 363.7 21.7 212 16-235 13-233 (263)
19 1ryp_B 20S proteasome; multica 100.0 1E-50 3.5E-55 354.5 22.9 201 15-222 11-218 (250)
20 1ryp_I 20S proteasome; multica 100.0 1.3E-49 4.5E-54 341.8 28.6 218 41-259 1-219 (222)
21 3unf_H Proteasome subunit beta 100.0 1.4E-49 4.7E-54 344.1 28.5 218 41-259 1-218 (234)
22 1iru_I 20S proteasome; cell cy 100.0 5.2E-49 1.8E-53 340.6 26.9 218 41-259 1-218 (234)
23 1iru_N 20S proteasome; cell cy 100.0 8.9E-48 3.1E-52 329.5 24.1 211 33-243 1-218 (219)
24 1ryp_N 20S proteasome; multica 100.0 5.3E-47 1.8E-51 327.7 23.6 212 33-244 1-229 (233)
25 1yar_H Proteasome beta subunit 100.0 8.6E-46 3E-50 316.9 23.9 201 34-235 2-204 (217)
26 1q5q_A Proteasome alpha-type s 100.0 2E-46 6.7E-51 329.0 20.1 209 14-236 5-233 (259)
27 1g0u_M Proteasome component PR 100.0 7.1E-46 2.4E-50 326.7 23.1 211 34-244 35-262 (266)
28 3nzj_K Proteasome component PR 100.0 5.1E-46 1.8E-50 330.2 20.6 211 34-244 69-282 (287)
29 1j2q_H Proteasome beta subunit 100.0 2.9E-45 9.8E-50 310.2 22.9 194 41-234 1-196 (202)
30 3h4p_a Proteasome subunit beta 100.0 3E-45 1E-49 314.0 22.0 196 40-235 1-199 (219)
31 1ryp_H 20S proteasome; multica 100.0 1.1E-44 3.8E-49 307.3 25.1 194 33-227 2-196 (205)
32 1iru_M 20S proteasome; cell cy 100.0 2.8E-44 9.5E-49 306.5 26.5 194 33-226 2-206 (213)
33 1iru_L 20S proteasome; cell cy 100.0 2.3E-44 7.8E-49 305.1 24.7 195 41-235 1-196 (204)
34 1ryp_M 20S proteasome; multica 100.0 4E-44 1.4E-48 307.6 25.9 194 33-226 2-215 (222)
35 1ryp_K 20S proteasome; multica 100.0 2.5E-44 8.5E-49 303.4 24.1 191 40-230 1-196 (198)
36 1iru_H 20S proteasome; cell cy 100.0 4.1E-44 1.4E-48 303.7 25.5 196 41-236 1-199 (205)
37 1ryp_L 20S proteasome; multica 100.0 1.5E-44 5.3E-49 308.0 22.4 198 41-238 1-201 (212)
38 1iru_K 20S proteasome; cell cy 100.0 1.2E-43 4E-48 300.1 24.0 193 40-232 1-197 (201)
39 3unf_N Proteasome subunit beta 100.0 2.8E-43 9.5E-48 297.2 24.3 194 41-236 1-198 (199)
40 1iru_J 20S proteasome; cell cy 100.0 5.8E-43 2E-47 296.7 25.7 191 35-225 3-197 (205)
41 1ryp_J 20S proteasome; multica 100.0 1.3E-42 4.3E-47 294.4 26.5 190 35-225 3-196 (204)
42 2jay_A Proteasome; hydrolase; 100.0 1.5E-43 5E-48 315.2 21.1 225 6-236 15-272 (291)
43 3mi0_A Proteasome subunit alph 100.0 2.2E-43 7.4E-48 307.5 21.1 208 14-235 5-234 (248)
44 1q5r_H Proteasome beta-type su 100.0 7E-43 2.4E-47 311.1 23.3 203 33-235 58-279 (294)
45 1q5q_H Proteasome beta-type su 100.0 1.4E-41 4.9E-46 294.1 23.5 195 41-235 1-214 (235)
46 2z3b_A ATP-dependent protease 100.0 6.4E-35 2.2E-39 242.7 20.7 169 38-219 3-180 (180)
47 1m4y_A ATP-dependent protease 100.0 1.8E-34 6.3E-39 237.9 20.6 165 41-218 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 2.6E-34 8.8E-39 237.7 21.1 167 41-220 1-174 (174)
49 3egr_A Phenylacetate-COA oxyge 28.5 58 0.002 23.3 3.6 54 187-247 32-85 (96)
50 3ub6_A Chemoreceptor TLPB; hom 28.0 1.1E+02 0.0038 23.9 5.7 51 174-229 36-86 (181)
51 3fau_A NEDD4-binding protein 2 24.0 69 0.0024 21.5 3.3 40 185-224 7-46 (82)
52 3fpw_A HBPS, extracellular HAE 23.6 1.3E+02 0.0045 24.2 5.4 37 183-223 62-98 (192)
53 2a2l_A Unknown; structural gen 21.3 90 0.0031 23.7 3.8 36 184-223 10-45 (145)
No 1
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.3e-54 Score=375.44 Aligned_cols=213 Identities=15% Similarity=0.188 Sum_probs=203.2
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||||||+||||| ++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|+++|..+|++.
T Consensus 11 ~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 84 (233)
T 1iru_B 11 TFSPSGKLVQIEYA-----LAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRV 84 (233)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHH
T ss_pred eECCCCeEehhHhH-----HHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHH
Confidence 39999999999999 9999999999999999999999999998 58888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
++++++.+++.|+.+++++++++.+++++++.++.| .|||++++|+||||++||+||.+||+|++.+++++++|+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~ 164 (233)
T 1iru_B 85 LVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGK 164 (233)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECC
Confidence 999999999999999999999999999999999654 369999999999998889999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCC
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP 234 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~ 234 (260)
|+.+++++||+.|+++||++||++++++||+.+.++| .++++++|++|+++|.+++++.+++..
T Consensus 165 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~~~ 228 (233)
T 1iru_B 165 NYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVKDY 228 (233)
T ss_dssp THHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHHHH
Confidence 9999999999999999999999999999999999999 668999999999999999998877543
No 2
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=5.2e-54 Score=371.57 Aligned_cols=215 Identities=22% Similarity=0.353 Sum_probs=201.3
Q ss_pred CCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEec
Q 024919 12 GGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGA 86 (260)
Q Consensus 12 ~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~s 86 (260)
.||| |||||||+||||| .+++++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|++|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~a 79 (233)
T 1yar_A 6 MAYSRAITVFSPDGRLFQVEYA-----REAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTS 79 (233)
T ss_dssp -------CCCCTTSCCHHHHHH-----HHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEE
T ss_pred ccCCCCCceECcCCeeHHHHhH-----HHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEe
Confidence 5665 9999999999999 999999999999999999999999999995 7778899999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc-----CccceEEEEEEEeCCCCEEEEEcCCCCccc
Q 024919 87 GTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVDATGPHLHTIYPHGSTDT 161 (260)
Q Consensus 87 G~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~-----~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~ 161 (260)
|..+|++.++++++.+++.|+..++++++++.+++++++.++.++ |||++++|+||||++||+||.+||+|++.+
T Consensus 80 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~ 159 (233)
T 1yar_A 80 GLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINE 159 (233)
T ss_dssp EBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEE
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEe
Confidence 999999999999999999999999999999999999999997553 699999999999988899999999999999
Q ss_pred cCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCC
Q 024919 162 LPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPN 233 (260)
Q Consensus 162 ~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~ 233 (260)
++++++|+|+.+++++||+.|+++||++||++++++||+.+.++|. ++++++|++|+++| .+++++.++..
T Consensus 160 ~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~ 231 (233)
T 1yar_A 160 YKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKK 231 (233)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHT
T ss_pred eeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHh
Confidence 9999999999999999999999999999999999999999999997 69999999999998 78888777654
No 3
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=5.4e-53 Score=370.68 Aligned_cols=247 Identities=54% Similarity=0.868 Sum_probs=212.6
Q ss_pred CCCccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChH
Q 024919 11 KGGFSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAA 90 (260)
Q Consensus 11 ~~g~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 90 (260)
.+||+|+.+-|.-+++-. -..+.+|+++|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+
T Consensus 1 ~~~~~~~~~~rn~~~~~~-~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~a 79 (261)
T 3nzj_H 1 MAGLSFDNYQRNNFLAEN-SHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAA 79 (261)
T ss_dssp ------------------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHH
T ss_pred CCCcCchhhhhHHHHHhc-CCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHH
Confidence 369999999999999743 3355799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhccCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCC
Q 024919 91 DTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (260)
Q Consensus 91 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g 170 (260)
|++.++++++.+++.|++.++++++++.+++++++.++++++||++++|+||||++||+||.+||+|++.+++++|+|+|
T Consensus 80 D~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsg 159 (261)
T 3nzj_H 80 DTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSG 159 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTT
T ss_pred HHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCCCCccccCCccccCCCc
Q 024919 171 SLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNPRTYISSKGYSFPKKT 249 (260)
Q Consensus 171 ~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (260)
+..++++||+.|+++||++||++++++||+.+.++|..++++++|++|+++| .++++++.+++.|.+ |...|.+|+||
T Consensus 160 s~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 238 (261)
T 3nzj_H 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGT 238 (261)
T ss_dssp HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC-CSSCCCCCTTC
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccc-cccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999 99999999999
Q ss_pred cceeeeeecc
Q 024919 250 EGTCITKLFP 259 (260)
Q Consensus 250 ~~~~~~~~~~ 259 (260)
+.-+..+..|
T Consensus 239 ~~~~~~~~~~ 248 (261)
T 3nzj_H 239 TAVLKESIVN 248 (261)
T ss_dssp SCEEEEEEEC
T ss_pred cceeeEEEEE
Confidence 9988887665
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.1e-54 Score=373.90 Aligned_cols=213 Identities=12% Similarity=0.104 Sum_probs=202.5
Q ss_pred cccCchhhHHHhhcCCCCCCccccC-CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~-G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~ 93 (260)
+|||||||+||||| ++|+++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++|+++|..+|++
T Consensus 9 ~fsp~Grl~QvEYA-----~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 82 (243)
T 1ryp_A 9 IFSPEGRLYQVEYA-----FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82 (243)
T ss_dssp SCCTTSCCHHHHHH-----HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHH
T ss_pred eECCCCeeHHHHHH-----HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHH
Confidence 49999999999999 999999 9999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEE
Q 024919 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (260)
Q Consensus 94 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~ai 167 (260)
.+++++|.+++.|++.++++++++.+++++++.++.| .+||++++|+||||+ +||+||.+||+|++.+++++++
T Consensus 83 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~ 162 (243)
T 1ryp_A 83 NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATAT 162 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEE
Confidence 9999999999999999999999999999999998432 379999999999997 7799999999999999999999
Q ss_pred cCChHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCC
Q 024919 168 GSGSLAAMAVFESKYRE-------GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP 234 (260)
Q Consensus 168 G~g~~~~~~~Le~~~~~-------~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~ 234 (260)
|+|+..++++||+.|++ +||++||++++++||..+.++| .++++++|++|+++|.+++++.+++..
T Consensus 163 G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~~~ 235 (243)
T 1ryp_A 163 GPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIEER 235 (243)
T ss_dssp STTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHHHH
T ss_pred CCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHHHH
Confidence 99999999999999998 9999999999999999999999 679999999999999999888877654
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.3e-53 Score=367.63 Aligned_cols=215 Identities=21% Similarity=0.302 Sum_probs=200.7
Q ss_pred CCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEec
Q 024919 12 GGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGA 86 (260)
Q Consensus 12 ~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~s 86 (260)
.||| |||||||+||||| .+++++|+|+|||+++||||||+|+|.++|.++ .++.+||++|++|++|++|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~a 79 (241)
T 1iru_E 6 SEYDRGVNTFSPEGRLFQVEYD-----IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMS 79 (241)
T ss_dssp --CCCCTTCBCTTSCBHHHHHH-----HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEE
T ss_pred CCCCCCCceECCCCccHHHHHH-----HHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEe
Confidence 5665 9999999999999 999999999999999999999999999998777 8899999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc----------cCccceEEEEEEEeCCCCEEEEEcCC
Q 024919 87 GTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY----------QGHVQAALVLGGVDATGPHLHTIYPH 156 (260)
Q Consensus 87 G~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~----------~~p~~v~~ivaG~D~~gp~Ly~iDp~ 156 (260)
|..+|++.++++++.+++.|+..++++++++.+++++++.++.| .|||++++|+||||++||+||.+||+
T Consensus 80 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~ 159 (241)
T 1iru_E 80 GLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPS 159 (241)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTT
T ss_pred eChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCC
Confidence 99999999999999999999999999999999999999988654 46999999999999878999999999
Q ss_pred CCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCC
Q 024919 157 GSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPN 233 (260)
Q Consensus 157 G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~ 233 (260)
|++.+++++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|+++| .+++++.++++
T Consensus 160 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~ 236 (241)
T 1iru_E 160 GTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEE 236 (241)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHH
T ss_pred CcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 6779999999999998 46777666543
No 6
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=6.7e-53 Score=367.14 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=200.0
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++++++|+|+|||+++||||||+|+|.++|.++.+ +.+||++|++|++|++||..+|++.
T Consensus 10 ~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~ 83 (244)
T 1ryp_G 10 VFSPDGRNFQVEYA-----VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRH 83 (244)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHH
T ss_pred cCCcCCchHHHHhH-----HHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHH
Confidence 39999999999999 99999999999999999999999999999877755 4599999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++++|.+++.|+++++++++++.+++++++.++.+ .+||++++|+||||++||+||.+||+|++.+++++++|+
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~ 163 (244)
T 1ryp_G 84 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK 163 (244)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECC
Confidence 999999999999999999999999999999998654 379999999999998889999999999999999999999
Q ss_pred ChHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeC---CCEEEeccccCC
Q 024919 170 GSLAAMAVFESK---YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK---GDKEYLRNHQLP 232 (260)
Q Consensus 170 g~~~~~~~Le~~---~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk---~g~~~~~~~~~~ 232 (260)
|+.+++++||+. |+++||++||++++++||+.+.++|..++.+++|++|++ +|.+...|.++.
T Consensus 164 gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~ 232 (244)
T 1ryp_G 164 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLL 232 (244)
T ss_dssp THHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHH
T ss_pred ChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHH
Confidence 999999999997 999999999999999999999999998899999999998 888887776553
No 7
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=4.8e-53 Score=367.48 Aligned_cols=214 Identities=22% Similarity=0.268 Sum_probs=202.0
Q ss_pred ccccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHH
Q 024919 14 FSFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTE 93 (260)
Q Consensus 14 ~~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~ 93 (260)
.+|||+|||+||||| ++++++|+|+|||+++||||||+|+|.++|.++ .++.+||++|++|++|+++|..+|++
T Consensus 5 t~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~ 78 (242)
T 1ryp_E 5 STFSPEGRLFQVEYS-----LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADAR 78 (242)
T ss_dssp TCBCTTSCBHHHHHH-----HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHH
T ss_pred ceECCCCcChHHHhH-----HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHH
Confidence 379999999999999 999999999999999999999999999998776 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----------cCccceEEEEEEEe-CCCCEEEEEcCCCCccc
Q 024919 94 AVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----------QGHVQAALVLGGVD-ATGPHLHTIYPHGSTDT 161 (260)
Q Consensus 94 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----------~~p~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~ 161 (260)
.++++++.+++.|++.++++++++.+++++++.++.+ .|||++++|+|||| ++||+||.+||+|++.+
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 158 (242)
T 1ryp_E 79 SMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYR 158 (242)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEec
Confidence 9999999999999999999999999999999988753 57999999999999 67799999999999999
Q ss_pred cCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE-EEeccccCCCC
Q 024919 162 LPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK-EYLRNHQLPNP 234 (260)
Q Consensus 162 ~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~-~~~~~~~~~~~ 234 (260)
++++++|+|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|+++|. +++++.+++..
T Consensus 159 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~ 231 (242)
T 1ryp_E 159 YNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAEL 231 (242)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHH
T ss_pred cCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999998 66799999999999985 78887776654
No 8
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-53 Score=373.39 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=201.0
Q ss_pred CCCCCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEE
Q 024919 9 PPKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYC 83 (260)
Q Consensus 9 ~~~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~ 83 (260)
|.+.||| |||+||||||||| ++|+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|
T Consensus 7 ~~~~~yd~~~t~fSp~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~ 80 (264)
T 3h4p_A 7 VPPSAYDRAITVFSPEGRLYQVEYA-----REAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAA 80 (264)
T ss_dssp ---------CCCCCSSSSCHHHHHH-----HHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEE
T ss_pred CCccccCCCcceECCCCeeHHHHhH-----HHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEE
Confidence 5578886 9999999999999 999999999999999999999999999985 7788999999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCC
Q 024919 84 CGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGS 158 (260)
Q Consensus 84 ~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~ 158 (260)
+++|..+|++.+++++|.+++.|++.++++++++.+|+++++.++.+ .|||++++||||||++||+||.+||+|+
T Consensus 81 ~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~ 160 (264)
T 3h4p_A 81 ATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGA 160 (264)
T ss_dssp EEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCC
T ss_pred EeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCce
Confidence 99999999999999999999999999999999999999999998654 2699999999999988899999999999
Q ss_pred ccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC--CEEEeccccCCCCCc
Q 024919 159 TDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG--DKEYLRNHQLPNPRT 236 (260)
Q Consensus 159 ~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~--g~~~~~~~~~~~~~~ 236 (260)
+.+++++|+|+|+.+++++|++.|+++||++||++++++||..+.++ .++++++|++|+++ +.+++.+.+++....
T Consensus 161 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~ 238 (264)
T 3h4p_A 161 LIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIE 238 (264)
T ss_dssp CEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTT
T ss_pred EEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 68999999999976 478888888776543
No 9
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1e-52 Score=369.40 Aligned_cols=216 Identities=19% Similarity=0.202 Sum_probs=205.4
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 85 (261)
T 1iru_C 11 IFSPEGRLYQVEYA-----MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV 85 (261)
T ss_dssp CCCTTSCCHHHHHH-----HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHH
T ss_pred cCCCCCeehHHHhH-----HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHH
Confidence 49999999999999 9999999999999999999999999999998888878999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEc
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMG 168 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG 168 (260)
++++++.+++.|++.++++++++.+++++++.++.+ .|||++++|+||||+ +||+||.+||+|++.+++++|+|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 165 (261)
T 1iru_C 86 LTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIG 165 (261)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeC
Confidence 999999999999999999999999999999999765 369999999999995 77999999999999999999999
Q ss_pred CChHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC----EEEeccccCCCCC
Q 024919 169 SGSLAAMAVFESKYRE-GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD----KEYLRNHQLPNPR 235 (260)
Q Consensus 169 ~g~~~~~~~Le~~~~~-~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g----~~~~~~~~~~~~~ 235 (260)
+|+.+++++|++.|++ +||++||++++++||..+.++|..++++++|++|+++| .+++++.+++...
T Consensus 166 sgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l 237 (261)
T 1iru_C 166 NNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237 (261)
T ss_dssp TTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHH
T ss_pred cccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999987 5788887777653
No 10
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.8e-53 Score=369.56 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=207.5
Q ss_pred CCCCCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEE
Q 024919 9 PPKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYC 83 (260)
Q Consensus 9 ~~~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~ 83 (260)
.++.||| |||+|||+||||| ++++++|+|+|||+++||||||+|+|.++|.++. ++.+||++|++|++|
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~ 75 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYA-----MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGM 75 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHH-----HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEE
T ss_pred CcccccCCCCccCCcCCccHHHHhH-----HHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEE
Confidence 3566775 9999999999999 9999999999999999999999999999987774 789999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc-----CccceEEEEEEEe-CCCCEEEEEcCCC
Q 024919 84 CGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ-----GHVQAALVLGGVD-ATGPHLHTIYPHG 157 (260)
Q Consensus 84 ~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~-----~p~~v~~ivaG~D-~~gp~Ly~iDp~G 157 (260)
+++|..+|++.+++++|.+++.|++.++++++++.+++++++.++.++ |||++++|||||| ++||+||.+||+|
T Consensus 76 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G 155 (254)
T 1iru_G 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSG 155 (254)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTC
T ss_pred EEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCC
Confidence 999999999999999999999999999999999999999999997663 7999999999999 6789999999999
Q ss_pred CccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC--C-EEEeccccCCCC
Q 024919 158 STDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG--D-KEYLRNHQLPNP 234 (260)
Q Consensus 158 ~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~--g-~~~~~~~~~~~~ 234 (260)
++.+++++++|+|+.+++++||+.|+++||++||+++++++|+.+.+++..++.+++|++|+++ | .+++++.++++.
T Consensus 156 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~ 235 (254)
T 1iru_G 156 VSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEA 235 (254)
T ss_dssp CEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHH
T ss_pred CEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888767889999999987 5 788888877665
Q ss_pred Ccc
Q 024919 235 RTY 237 (260)
Q Consensus 235 ~~~ 237 (260)
...
T Consensus 236 ~~~ 238 (254)
T 1iru_G 236 EKY 238 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 11
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.5e-52 Score=364.84 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=200.8
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||||||+||||| ++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 85 (244)
T 1ryp_C 11 IFSPEGRLYQVEYA-----LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 85 (244)
T ss_dssp CBCTTSCBHHHHHH-----HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHH
T ss_pred eECcCCeeHHHHhH-----HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHH
Confidence 49999999999999 9999999999999999999999999999987766889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEe-CCCCEEEEEcCCCCccccCeEEEc
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMG 168 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~aiG 168 (260)
++++++.+++.|++.++++++++.+++++++.++.+ .|||++++|+|||| ++||+||.+||+|++.+++++++|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 165 (244)
T 1ryp_C 86 LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVG 165 (244)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEEC
Confidence 999999999999999999999999999999998654 36999999999999 678999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEe--CCC----EEEeccccCCCC
Q 024919 169 SGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT--KGD----KEYLRNHQLPNP 234 (260)
Q Consensus 169 ~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iit--k~g----~~~~~~~~~~~~ 234 (260)
+|+.+++++||+.|+++||++||++++++||..+.++|..++++++|++|+ ++| .+++++.+++..
T Consensus 166 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~ 237 (244)
T 1ryp_C 166 ANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDI 237 (244)
T ss_dssp TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHH
T ss_pred CCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHH
Confidence 999999999999999999999999999999999999955579999999999 887 567776665443
No 12
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.2e-52 Score=363.15 Aligned_cols=212 Identities=19% Similarity=0.206 Sum_probs=200.8
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++|+++|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.
T Consensus 8 ~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 82 (241)
T 1ryp_D 8 IFSPDGHIFQVEYA-----LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRI 82 (241)
T ss_dssp CCBTTTBCHHHHHH-----HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHH
T ss_pred eECCCCcchHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHH
Confidence 59999999999999 9999999999999999999999999999988877779999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC--CCCEEEEEcCCCCccccCeEEE
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA--TGPHLHTIYPHGSTDTLPFATM 167 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~~~~ai 167 (260)
++++++.+++.|++.++++++++.+|+++++.++.+ .|||++++|+||||+ +||+||.+||+|++.+++++|+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ai 162 (241)
T 1ryp_D 83 LIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTI 162 (241)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEE
Confidence 999999999999999999999999999999999865 269999999999998 7899999999999999999999
Q ss_pred cCChHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCCC
Q 024919 168 GSGSLAAMAVFESKY---REGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNP 234 (260)
Q Consensus 168 G~g~~~~~~~Le~~~---~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~~ 234 (260)
|+|+.+++++||+.| +++||++||++++++||..+.+ .++++++|++|+++| .+++++.+++..
T Consensus 163 G~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~ 230 (241)
T 1ryp_D 163 GRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQY 230 (241)
T ss_dssp STTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHH
Confidence 999999999999999 9999999999999999999986 568999999999986 788888877654
No 13
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.7e-52 Score=362.23 Aligned_cols=210 Identities=21% Similarity=0.192 Sum_probs=198.4
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||||||+||||| ++|+++|+|+|||+++||||||+|+|.++|.. ++.+||++|++|++|+++|..+|++.
T Consensus 11 ~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~ 82 (233)
T 1ryp_F 11 TFSPTGRLFQVEYA-----LEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARV 82 (233)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCeehHHHHH-----HHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHH
Confidence 59999999999999 99999999999999999999999999998732 57899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++++|.+++.|++.++++++++.+++++++.++.| .|||++++|+||||++||+||.+||+|++.+++++|+|+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~ 162 (233)
T 1ryp_F 83 LSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGA 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEEST
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECC
Confidence 999999999999999999999999999999998643 479999999999999889999999999999999999999
Q ss_pred ChHHHHHHHHhhcCC--CC--CHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEeCC-CEEEeccccCCC
Q 024919 170 GSLAAMAVFESKYRE--GL--TKEEGISLVCEAICSGIFND-LGSGSNVDICVITKG-DKEYLRNHQLPN 233 (260)
Q Consensus 170 g~~~~~~~Le~~~~~--~~--s~~eai~l~~~al~~a~~~d-~~~~~~iei~iitk~-g~~~~~~~~~~~ 233 (260)
|+..++++||+.|++ +| |++||+++++++|+.+. +| ..++++++|++|+++ |.+++++.+++.
T Consensus 163 gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~ 231 (233)
T 1ryp_F 163 RSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAK 231 (233)
T ss_dssp THHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGG
T ss_pred CcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHh
Confidence 999999999999998 99 99999999999999999 77 568999999999999 689999988764
No 14
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.3e-52 Score=364.15 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=202.8
Q ss_pred CCCcc-----ccCchhhHHHhhcCCCCCCccccC-CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEE
Q 024919 11 KGGFS-----FDLCRRNDMLSKKGIVPPPSYRKT-GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCC 84 (260)
Q Consensus 11 ~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~-G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~ 84 (260)
..||| |||+|||+||||| .+++++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|+
T Consensus 6 ~~~yd~~~t~fsp~Grl~QvEya-----~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~ 79 (246)
T 1iru_A 6 SAGFDRHITIFSPEGRLYQVEYA-----FKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCV 79 (246)
T ss_dssp CCTTTTTSSCCCTTSCCHHHHHH-----HHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEE
T ss_pred cCCcCCCCccCCCCCeehHHHHH-----HHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEE
Confidence 35775 9999999999999 999999 9999999999999999999999 5888899999999999999999
Q ss_pred ecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhh---c--cCccceEEEEEEEeC-CCCEEEEEcCCCC
Q 024919 85 GAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFK---Y--QGHVQAALVLGGVDA-TGPHLHTIYPHGS 158 (260)
Q Consensus 85 ~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~---~--~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~ 158 (260)
++|..+|++.++++++.+++.|+..++++++++.+++++++.++. + .|||++++|+||||+ +||+||.+||+|+
T Consensus 80 ~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~ 159 (246)
T 1iru_A 80 MTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGY 159 (246)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSC
T ss_pred EeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCee
Confidence 999999999999999999999999999999999999999988542 2 479999999999997 7799999999999
Q ss_pred ccccCeEEEcCChHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE--EEeccccCCCC
Q 024919 159 TDTLPFATMGSGSLAAMAVFESKYRE--GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK--EYLRNHQLPNP 234 (260)
Q Consensus 159 ~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~--~~~~~~~~~~~ 234 (260)
+.+++++|+|+|+.+++++||+.|++ +||++||++++++||+.+.++| .++++++|++|+++|. +++++.+++..
T Consensus 160 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~ 238 (246)
T 1iru_A 160 YCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAH 238 (246)
T ss_dssp EEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHH
T ss_pred EEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999 7899999999999995 77777766543
No 15
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.8e-52 Score=370.69 Aligned_cols=215 Identities=19% Similarity=0.202 Sum_probs=199.5
Q ss_pred CCCCCcc-----ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEE
Q 024919 9 PPKGGFS-----FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYC 83 (260)
Q Consensus 9 ~~~~g~~-----fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~ 83 (260)
.+++||| |||+|||+||||| ++|+++|+|+|||+++||||||+|+|.++|.++. +..+||++|++|++|
T Consensus 3 ~~~~~yd~~~t~fSP~Grl~QvEYA-----~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~ 76 (288)
T 3nzj_F 3 SIGTGYDLSNSVFSPDGRNFQVEYA-----VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGC 76 (288)
T ss_dssp --CCCTTSSTTCCCTTSCCHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEE
T ss_pred CCcCCccCCcccCCCCCchHHHHHH-----HHHHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEE
Confidence 3577886 9999999999999 9999999999999999999999999999987765 477999999999999
Q ss_pred EecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCC
Q 024919 84 CGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGS 158 (260)
Q Consensus 84 ~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~ 158 (260)
+++|+.+|++.+++++|.+++.|++.++++++++.+|+++++.++.| .|||++++||||||++||+||.+||+|+
T Consensus 77 ~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~ 156 (288)
T 3nzj_F 77 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGS 156 (288)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999765 3699999999999998899999999999
Q ss_pred ccccCeEEEcCChHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeC---CCEEEeccc
Q 024919 159 TDTLPFATMGSGSLAAMAVFESK---YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITK---GDKEYLRNH 229 (260)
Q Consensus 159 ~~~~~~~aiG~g~~~~~~~Le~~---~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk---~g~~~~~~~ 229 (260)
+.+++++++|+|+.+++++||+. |+++||++||++++++||..+.+++..++..++|.+|++ +|.+..-|.
T Consensus 157 ~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~ 233 (288)
T 3nzj_F 157 YWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKG 233 (288)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCH
T ss_pred EEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCH
Confidence 99999999999999999999999 999999999999999999999999988889999999999 345444444
No 16
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.6e-51 Score=358.79 Aligned_cols=212 Identities=21% Similarity=0.257 Sum_probs=200.2
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||||||+||||| .+++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|++|+++|..+|++.
T Consensus 14 ~fsp~Grl~QvEya-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 87 (246)
T 1j2p_A 14 VFSPDGRLFQVEYA-----REAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARV 87 (246)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHH
T ss_pred eECCCCeehHHHhH-----HHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHH
Confidence 39999999999999 999999999999999999999999999985 566889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcC
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGS 169 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~ 169 (260)
+++++|.+++.|++.++++++++.+++++++.++.| .|||++++|+|||| +||+||.+||+|++.+++++|+|+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGs 166 (246)
T 1j2p_A 88 LIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIGM 166 (246)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEEST
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEECC
Confidence 999999999999999999999999999999999654 35999999999999 889999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEe-C-CCEEEeccccCCCC
Q 024919 170 GSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVIT-K-GDKEYLRNHQLPNP 234 (260)
Q Consensus 170 g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iit-k-~g~~~~~~~~~~~~ 234 (260)
|+.+++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ + ++.+++++.+++..
T Consensus 167 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~ 232 (246)
T 1j2p_A 167 GRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPY 232 (246)
T ss_dssp THHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHH
T ss_pred CcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHH
Confidence 999999999999999999999999999999999998 7789999999999 6 47899988887654
No 17
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2e-52 Score=364.90 Aligned_cols=214 Identities=20% Similarity=0.267 Sum_probs=201.7
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++++++|+|+|||+++||||||+|+|.++| ++..++.+||++|++|++|+++|..+|++.
T Consensus 9 ~fsp~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 9 VFSPDGHLFQVEYA-----QEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCTTSCCHHHHHH-----HHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred eECCCCcchHHHHH-----HHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 69999999999999 999999999999999999999999999997 677889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEe-CCCCEEEEEcCCCCccccCeEEEc
Q 024919 95 VTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMG 168 (260)
Q Consensus 95 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~aiG 168 (260)
++++++.+++.|++.++++++++.+++++++.++.+ .|||++++|||||| ++||+||.+||+|++.+++++++|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 999999999999999999999999999999999765 36999999999999 678999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCCCCcc
Q 024919 169 SGSLAAMAVFESKYREGL--TKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNPRTY 237 (260)
Q Consensus 169 ~g~~~~~~~Le~~~~~~~--s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~~~~~ 237 (260)
+|+.+++++||+.|+++| |++||++++++||+.+.+ .++++++|++|+++| .+++++.+++.....
T Consensus 163 ~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~ 231 (248)
T 1iru_D 163 RGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAE 231 (248)
T ss_dssp TTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTT
T ss_pred CCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHH
Confidence 999999999999999999 999999999999999886 368999999999998 889988888766443
No 18
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=9e-52 Score=363.72 Aligned_cols=212 Identities=19% Similarity=0.173 Sum_probs=200.7
Q ss_pred ccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHH
Q 024919 16 FDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAV 95 (260)
Q Consensus 16 fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l 95 (260)
|||+|||+||||| ++++++|+|+|||+++||||||+|+|.++|. .++.+||++|++|++|+++|..+|++.+
T Consensus 13 fsP~Grl~QvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l 84 (263)
T 1iru_F 13 WSPQGRIHQIEYA-----MEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLL 84 (263)
T ss_dssp CCTTSCCHHHHHH-----HHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCCCeehHHHHH-----HHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHH
Confidence 9999999999999 9999999999999999999999999999873 2578999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCC
Q 024919 96 TDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSG 170 (260)
Q Consensus 96 ~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g 170 (260)
+++++.+++.|++.++++++++.+++++++.++.+ .|||++++||||||++||+||.+||+|++.+++++++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsg 164 (263)
T 1iru_F 85 CNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGAR 164 (263)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcCcc
Confidence 99999999999999999999999999999999743 4799999999999998899999999999999999999999
Q ss_pred hHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEeCC-CEEEeccccCCCCC
Q 024919 171 SLAAMAVFESKYRE--GLTKEEGISLVCEAICSGIFND-LGSGSNVDICVITKG-DKEYLRNHQLPNPR 235 (260)
Q Consensus 171 ~~~~~~~Le~~~~~--~~s~~eai~l~~~al~~a~~~d-~~~~~~iei~iitk~-g~~~~~~~~~~~~~ 235 (260)
+.+++++||+.|++ +||++||++++++||+.+.++| ..++++++|++|+++ +.+++++.+++...
T Consensus 165 s~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~ 233 (263)
T 1iru_F 165 SQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233 (263)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHH
T ss_pred cHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHH
Confidence 99999999999998 9999999999999999999999 478999999999999 68899988886654
No 19
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1e-50 Score=354.53 Aligned_cols=201 Identities=17% Similarity=0.300 Sum_probs=189.1
Q ss_pred cccCchhhHHHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHH
Q 024919 15 SFDLCRRNDMLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEA 94 (260)
Q Consensus 15 ~fsp~Gr~~Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~ 94 (260)
+|||+|||+||||| ++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||..+|++.
T Consensus 11 ~fsp~Grl~QvEyA-----~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 84 (250)
T 1ryp_B 11 TFSPSGKLGQIDYA-----LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84 (250)
T ss_dssp CBCTTSCBHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHH
T ss_pred eECCCCccHHHHhH-----HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHH
Confidence 49999999999999 9999999999999999999999999998 68888999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHHhhc-----cCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEE
Q 024919 95 VTDMVSSQLQL-HRYHTGRESRVVTALTLLKSHLFKY-----QGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATM 167 (260)
Q Consensus 95 l~~~~r~~~~~-~~~~~~~~i~~~~la~~l~~~~~~~-----~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~ai 167 (260)
++++++.+++. |+..++++++++.+++.+++.++.+ .+||++++|+||||+ +||+||.+||+|++.+++++|+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 164 (250)
T 1ryp_B 85 LVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAI 164 (250)
T ss_dssp HHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEe
Confidence 99999999999 9999999999999888777776533 279999999999997 5799999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC
Q 024919 168 GSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGD 222 (260)
Q Consensus 168 G~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g 222 (260)
|+|+.+++++||+.|+++||++||++++++||+.+.+++. ++++++|++|++++
T Consensus 165 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 165 GKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred cCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 9999999999999999999999999999999999998864 69999999999974
No 20
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.3e-49 Score=341.78 Aligned_cols=218 Identities=56% Similarity=0.907 Sum_probs=211.6
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+++++|.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~ 200 (260)
+++++.++++++||++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++||+
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 160 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQ 160 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEEEeCCC-EEEeccccCCCCCccccCCccccCCCccceeeeeecc
Q 024919 201 SGIFNDLGSGSNVDICVITKGD-KEYLRNHQLPNPRTYISSKGYSFPKKTEGTCITKLFP 259 (260)
Q Consensus 201 ~a~~~d~~~~~~iei~iitk~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.+.++|..++++++|++|+++| +++++++.+++.|.+ |..+|.+|+||+..+-.+.+|
T Consensus 161 ~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 219 (222)
T 1ryp_I 161 AGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGTTAVLKESIVN 219 (222)
T ss_dssp HHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC-CSSCCCCCTTCSCEEEEEECC
T ss_pred HHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccc-cccCcccCCCceeeeeeeeEe
Confidence 9999999899999999999999 999999999999977 479999999999999988876
No 21
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.4e-49 Score=344.10 Aligned_cols=218 Identities=51% Similarity=0.859 Sum_probs=211.3
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~ 200 (260)
+++++.++++++||++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++||+
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 160 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAIT 160 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccccCCCccceeeeeecc
Q 024919 201 SGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPKKTEGTCITKLFP 259 (260)
Q Consensus 201 ~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.+..+|..++++++|++|+++|+++++++++++.|.+ |...|.+|+||+.-+..+..|
T Consensus 161 ~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T 3unf_H 161 AGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQ-RAGRYRFAPGTTPVLTREVRP 218 (234)
T ss_dssp HHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCCC-CCCCCCCCTTCSCEEEEEEEE
T ss_pred HHHhhcCCCCCcEEEEEEECCCEEEeCceeccccccc-ccccccCCCCCcceeeEEEEE
Confidence 9999999999999999999999999999999999995 889999999999988877654
No 22
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=5.2e-49 Score=340.65 Aligned_cols=218 Identities=59% Similarity=0.986 Sum_probs=210.7
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAIC 200 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~ 200 (260)
+++++.++++++||++++|+||||++||+||.+||+|++.+++++++|+|+..++++||+.|+++||++||++++++||+
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 160 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIA 160 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccccCCCccceeeeeecc
Q 024919 201 SGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPKKTEGTCITKLFP 259 (260)
Q Consensus 201 ~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
.+.++|..++++++|++|+++|+++++++.+++.|.+ |.++|.+|+||+..+-.+..|
T Consensus 161 ~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T 1iru_I 161 AGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT-RLGRYRCEKGTTAVLTEKITP 218 (234)
T ss_dssp HHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCC-CCSCCCCCTTCSCBSCCCCCB
T ss_pred HHHHhcccCCCCEEEEEEECCcEEEEcceecCccccc-cccCcccCCCceeeeEEEEEe
Confidence 9999999899999999999999999999999999988 688999999999999777655
No 23
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=8.9e-48 Score=329.52 Aligned_cols=211 Identities=17% Similarity=0.215 Sum_probs=201.0
Q ss_pred CCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhh-hcC
Q 024919 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY-HTG 111 (260)
Q Consensus 33 ~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-~~~ 111 (260)
+++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+++|.+++.|+. .++
T Consensus 1 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (219)
T 1iru_N 1 TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDG 80 (219)
T ss_dssp CCSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CCCCHHHHHHHHHHHHhhc---cCccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCC--CC
Q 024919 112 RESRVVTALTLLKSHLFKY---QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE--GL 186 (260)
Q Consensus 112 ~~i~~~~la~~l~~~~~~~---~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~ 186 (260)
++++++.+++++++.++.+ .+||++++|+||||++||+||.+||+|++.+++++++|+|+.+++++||+.|++ +|
T Consensus 81 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 9999999999999998754 379999999999998889999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCcccc-CCcc
Q 024919 187 TKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYIS-SKGY 243 (260)
Q Consensus 187 s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~-~~~~ 243 (260)
|++||++++++||..+.++|..++++++|++|+++|++++++++++..|.|+. .+||
T Consensus 161 t~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~~~~~~~ 218 (219)
T 1iru_N 161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMISGF 218 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGCSCC-
T ss_pred CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999966 4444
No 24
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=5.3e-47 Score=327.70 Aligned_cols=212 Identities=19% Similarity=0.291 Sum_probs=202.4
Q ss_pred CCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhh----
Q 024919 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY---- 108 (260)
Q Consensus 33 ~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~---- 108 (260)
+++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+++++|.+++.|++
T Consensus 1 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (233)
T 1ryp_N 1 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 80 (233)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CcccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccch
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hcCCCCCHHHHHHHHHHHHhhcc---CccceEEEEEEEeCC-CCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcC
Q 024919 109 -HTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYR 183 (260)
Q Consensus 109 -~~~~~i~~~~la~~l~~~~~~~~---~p~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 183 (260)
.++++++++.+++++++.+|.++ +||++++|+||||++ ||+||.+||+|++.+++++++|+|+.+++++||+.|+
T Consensus 81 ~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 160 (233)
T 1ryp_N 81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc
Confidence 89999999999999999998654 699999999999975 8999999999999999999999999999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC-CEEEeccccCCCC-Ccccc-CCccc
Q 024919 184 E-----GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPNP-RTYIS-SKGYS 244 (260)
Q Consensus 184 ~-----~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~-g~~~~~~~~~~~~-~~~~~-~~~~~ 244 (260)
+ +||++||++++++||+.+.++|..++++++|++|+++ |++++++++++.. |.|+. .+||.
T Consensus 161 ~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~~~~~~~ 229 (233)
T 1ryp_N 161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG 229 (233)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSSS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhhhccCcC
Confidence 9 9999999999999999999999999999999999999 9999999999999 99966 66664
No 25
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=8.6e-46 Score=316.95 Aligned_cols=201 Identities=29% Similarity=0.413 Sum_probs=186.9
Q ss_pred CccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCC
Q 024919 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (260)
Q Consensus 34 ~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~ 113 (260)
.+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.+++++|.+++.|++.++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcc-CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHH
Q 024919 114 SRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGI 192 (260)
Q Consensus 114 i~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai 192 (260)
++++.+++++++.++.++ +||++++|+|||| +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||+
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 160 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV 160 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHH
Confidence 999999999999998765 6999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeC-CCEEEeccccCCCCC
Q 024919 193 SLVCEAICSGIFNDLGSGSNVDICVITK-GDKEYLRNHQLPNPR 235 (260)
Q Consensus 193 ~l~~~al~~a~~~d~~~~~~iei~iitk-~g~~~~~~~~~~~~~ 235 (260)
+++++||+.+.++|..++++++|++|++ +|.+++++.+++..+
T Consensus 161 ~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~ 204 (217)
T 1yar_H 161 DLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRI 204 (217)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHH
Confidence 9999999999999998999999999999 899999888876543
No 26
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2e-46 Score=329.00 Aligned_cols=209 Identities=15% Similarity=0.203 Sum_probs=187.3
Q ss_pred ccccCchhhH-HHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHH
Q 024919 14 FSFDLCRRND-MLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (260)
Q Consensus 14 ~~fsp~Gr~~-Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 92 (260)
+-|||||++. ||||| .+++++|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|..+|+
T Consensus 5 ~~~sPe~~~~~qvEYA-----~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~ 71 (259)
T 1q5q_A 5 YYASAEQIMRDRSELA-----RKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEF 71 (259)
T ss_dssp ----CHHHHHHHHHHH-----HHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHH
T ss_pred cccCHHHHHHHHHHHH-----HHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHH
Confidence 4589999995 99999 99999999999999999999999998 3578999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcC-CCCCHHHHHHHHHHHH---h-hccCccceEEEEEEEe----CCCCEEEEEcCCCCcc-cc
Q 024919 93 EAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKSHL---F-KYQGHVQAALVLGGVD----ATGPHLHTIYPHGSTD-TL 162 (260)
Q Consensus 93 ~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~l~~~~---~-~~~~p~~v~~ivaG~D----~~gp~Ly~iDp~G~~~-~~ 162 (260)
+.++++++.+++.|++.++ ++++++.+++++++.+ + ...+||++++|||||| ++||+||.+||+|++. ++
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~ 151 (259)
T 1q5q_A 72 ENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQ 151 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCC
Confidence 9999999999999998887 4899999999999953 3 2347999999999999 6789999999999999 88
Q ss_pred CeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-----hhcCCCCCcEEEEEEeCC----CEEEeccccCCC
Q 024919 163 PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI-----FNDLGSGSNVDICVITKG----DKEYLRNHQLPN 233 (260)
Q Consensus 163 ~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~-----~~d~~~~~~iei~iitk~----g~~~~~~~~~~~ 233 (260)
+++++|+|+..++++||+.|+++||++||++++++||..+. ++|. ++.+++|++|+++ +.+++++.+++.
T Consensus 152 ~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~ 230 (259)
T 1q5q_A 152 HFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQ 230 (259)
T ss_dssp SEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHT
T ss_pred CEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHH
Confidence 99999999999999999999999999999999999999998 8998 8999999999999 688888888776
Q ss_pred CCc
Q 024919 234 PRT 236 (260)
Q Consensus 234 ~~~ 236 (260)
...
T Consensus 231 ~~~ 233 (259)
T 1q5q_A 231 LVP 233 (259)
T ss_dssp TSC
T ss_pred HHH
Confidence 643
No 27
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=7.1e-46 Score=326.65 Aligned_cols=211 Identities=19% Similarity=0.292 Sum_probs=201.5
Q ss_pred CccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhh-----
Q 024919 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRY----- 108 (260)
Q Consensus 34 ~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~----- 108 (260)
.+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+++++|.+++.|++
T Consensus 35 ~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 114 (266)
T 1g0u_M 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 114 (266)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhhcc---CccceEEEEEEEeCC-CCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCC
Q 024919 109 HTGRESRVVTALTLLKSHLFKYQ---GHVQAALVLGGVDAT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYRE 184 (260)
Q Consensus 109 ~~~~~i~~~~la~~l~~~~~~~~---~p~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 184 (260)
.++++++++.+++++++.+|.++ +||++++||||||++ ||+||.+||+|++.+++++++|+|+.+++++||+.|++
T Consensus 115 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 194 (266)
T 1g0u_M 115 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 194 (266)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcc
Confidence 89999999999999999998653 799999999999975 89999999999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC-CEEEeccccCCCC-Ccccc-CCccc
Q 024919 185 -----GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKG-DKEYLRNHQLPNP-RTYIS-SKGYS 244 (260)
Q Consensus 185 -----~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~-g~~~~~~~~~~~~-~~~~~-~~~~~ 244 (260)
+||++||++++++||+.+.++|..++++++|++|+++ |+++++++++++. |.|+. .+||-
T Consensus 195 ~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~~~~~~~ 262 (266)
T 1g0u_M 195 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG 262 (266)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGGGCCSSS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHhhhcCcC
Confidence 9999999999999999999999999999999999999 9999999999999 99965 55553
No 28
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5.1e-46 Score=330.23 Aligned_cols=211 Identities=25% Similarity=0.348 Sum_probs=195.3
Q ss_pred CccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCC
Q 024919 34 PSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRE 113 (260)
Q Consensus 34 ~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~ 113 (260)
..++.+|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++
T Consensus 69 ~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~ 148 (287)
T 3nzj_K 69 KIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKER 148 (287)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcc-CccceEEEEEEEe-CCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHH
Q 024919 114 SRVVTALTLLKSHLFKYQ-GHVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191 (260)
Q Consensus 114 i~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 191 (260)
++++.+++++++.+|.++ .||++++|+|||| ++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||
T Consensus 149 isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEA 228 (287)
T 3nzj_K 149 ISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA 228 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHH
Confidence 999999999999998775 5899999999999 57799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCC-CccccCCccc
Q 024919 192 ISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP-RTYISSKGYS 244 (260)
Q Consensus 192 i~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~-~~~~~~~~~~ 244 (260)
++++++||..+.+||..++++++|++|+++|.+++++.++++. |.++.++|.+
T Consensus 229 i~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e~~~~~ 282 (287)
T 3nzj_K 229 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSF 282 (287)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999874 8887766654
No 29
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.9e-45 Score=310.20 Aligned_cols=194 Identities=27% Similarity=0.425 Sum_probs=186.8
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+++++|.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CccceEEEEEEEeCCCCEEEEEcCCCCccccC-eEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (260)
Q Consensus 121 ~~l~~~~~~~~-~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~a 198 (260)
+++++.++.++ +||++++|+||||++||+||.+||+|++.+++ ++|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~a 160 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRA 160 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHH
Confidence 99999998764 69999999999998889999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCC
Q 024919 199 ICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP 234 (260)
Q Consensus 199 l~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~ 234 (260)
|+.+.++|..++++++|++|+++|.+++++.+++..
T Consensus 161 l~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~ 196 (202)
T 1j2q_H 161 IYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQI 196 (202)
T ss_dssp HHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHH
T ss_pred HHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHH
Confidence 999999999899999999999999999988877654
No 30
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3e-45 Score=314.03 Aligned_cols=196 Identities=31% Similarity=0.461 Sum_probs=188.4
Q ss_pred CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 40 G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+++++|.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-CccceEEEEEEEeC-CCCEEEEEcCCCCccccC-eEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHH
Q 024919 120 LTLLKSHLFKYQ-GHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMAVFESKYREGLTKEEGISLVC 196 (260)
Q Consensus 120 a~~l~~~~~~~~-~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 196 (260)
++++++.+++++ +||++++|+||||+ +||+||.+||+|++.+++ ++++|+|+.+++++||+.|+++||++||+++++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999998764 69999999999998 779999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCC
Q 024919 197 EAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR 235 (260)
Q Consensus 197 ~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~ 235 (260)
+||..+.++|..++++++|++|+++|++++++.++....
T Consensus 161 ~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l 199 (219)
T 3h4p_a 161 NALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKIL 199 (219)
T ss_dssp HHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHH
Confidence 999999999999999999999999999999999887663
No 31
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.1e-44 Score=307.31 Aligned_cols=194 Identities=30% Similarity=0.514 Sum_probs=185.8
Q ss_pred CCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCC
Q 024919 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR 112 (260)
Q Consensus 33 ~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~ 112 (260)
..+++++|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+++++|.+++.|++.+++
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHH
Q 024919 113 ESRVVTALTLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEG 191 (260)
Q Consensus 113 ~i~~~~la~~l~~~~~~~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 191 (260)
++++.+++++++.++.++..|++++|+||||+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||
T Consensus 82 -~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 160 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEET 160 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred -CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHH
Confidence 99999999999999988766999999999997 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEec
Q 024919 192 ISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLR 227 (260)
Q Consensus 192 i~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~ 227 (260)
++++++||+.+.++|..++++++|++|+++|++...
T Consensus 161 ~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~ 196 (205)
T 1ryp_H 161 VDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196 (205)
T ss_dssp HHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEE
Confidence 999999999999999999999999999999976443
No 32
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.8e-44 Score=306.50 Aligned_cols=194 Identities=19% Similarity=0.273 Sum_probs=184.3
Q ss_pred CCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCC
Q 024919 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR 112 (260)
Q Consensus 33 ~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~ 112 (260)
+.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.++++++.+++.|++.+++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcc-CccceEEEEEEEeCCC-CEEEEEcCCCCccccCeEEEcCChHHHHHHHHhh---------
Q 024919 113 ESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESK--------- 181 (260)
Q Consensus 113 ~i~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~--------- 181 (260)
+++++.+++++++.+|..+ +||++++|+||||++| |+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 9999999999999997544 7999999999999755 9999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEe
Q 024919 182 YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (260)
Q Consensus 182 ~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~ 226 (260)
|+++||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 888999999999999999999999999999999999999997643
No 33
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.3e-44 Score=305.11 Aligned_cols=195 Identities=25% Similarity=0.364 Sum_probs=187.3
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CccceEEEEEEEeCCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQ-GHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (260)
Q Consensus 121 ~~l~~~~~~~~-~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al 199 (260)
+++++.++.++ .||++++|+||||++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAI 160 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 99999999875 48999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCC
Q 024919 200 CSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPR 235 (260)
Q Consensus 200 ~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~ 235 (260)
+.+.++|..++++++|++|+++|++++++.+++...
T Consensus 161 ~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~ 196 (204)
T 1iru_L 161 YQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 196 (204)
T ss_dssp HHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHH
T ss_pred HHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHH
Confidence 999999988899999999999999999988876553
No 34
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4e-44 Score=307.63 Aligned_cols=194 Identities=20% Similarity=0.262 Sum_probs=184.6
Q ss_pred CCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcC-
Q 024919 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTG- 111 (260)
Q Consensus 33 ~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~- 111 (260)
+.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.++++++.+++.|++.++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578899999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcc-CccceEEEEEEEeCCC-CEEEEEcCCCCccccCeEEEcCChHHHHHHHHhh--------
Q 024919 112 RESRVVTALTLLKSHLFKYQ-GHVQAALVLGGVDATG-PHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESK-------- 181 (260)
Q Consensus 112 ~~i~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~-------- 181 (260)
++++++.+|+++++.+|..+ +||++++|+||||++| |+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 99999999999999998654 6999999999999755 9999999999999999999999999999999998
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEe
Q 024919 182 ---------YREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYL 226 (260)
Q Consensus 182 ---------~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~ 226 (260)
|+++||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 215 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE 215 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence 889999999999999999999999999999999999999997643
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.5e-44 Score=303.42 Aligned_cols=191 Identities=22% Similarity=0.298 Sum_probs=183.2
Q ss_pred CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 40 G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
.+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+++++|.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc---CccceEEEEEEEeC--CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHH
Q 024919 120 LTLLKSHLFKYQ---GHVQAALVLGGVDA--TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISL 194 (260)
Q Consensus 120 a~~l~~~~~~~~---~p~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l 194 (260)
++++++.+++++ +||++++|+||||+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||+++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 160 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999998763 49999999999995 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEecccc
Q 024919 195 VCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQ 230 (260)
Q Consensus 195 ~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~ 230 (260)
+++||..+.++|..++++++|++|+++|++.+++++
T Consensus 161 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 161 LKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred HHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 999999999999999999999999999999988854
No 36
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.1e-44 Score=303.74 Aligned_cols=196 Identities=32% Similarity=0.531 Sum_probs=187.4
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+++++|.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAI 199 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al 199 (260)
+++++.++.++.||++++|+||||+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999988889999999999997 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeCCCE--EEeccccCCCCCc
Q 024919 200 CSGIFNDLGSGSNVDICVITKGDK--EYLRNHQLPNPRT 236 (260)
Q Consensus 200 ~~a~~~d~~~~~~iei~iitk~g~--~~~~~~~~~~~~~ 236 (260)
+.+.++|..++++++|++|+++|. +++++.+++..+.
T Consensus 161 ~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 161 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 999999999999999999999985 5688888876654
No 37
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.5e-44 Score=307.96 Aligned_cols=198 Identities=26% Similarity=0.376 Sum_probs=190.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.+++++|.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-ccceEEEEEEEe-CCCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQG-HVQAALVLGGVD-ATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (260)
Q Consensus 121 ~~l~~~~~~~~~-p~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~a 198 (260)
+++++.++.+++ ||++++|+|||| ++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 999999998764 899999999999 567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCC-Cccc
Q 024919 199 ICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNP-RTYI 238 (260)
Q Consensus 199 l~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~-~~~~ 238 (260)
|+.+.++|..++++++|++|+++|.+++++.+++.. |.++
T Consensus 161 l~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~ 201 (212)
T 1ryp_L 161 ILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVK 201 (212)
T ss_dssp HHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHH
T ss_pred HHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 7663
No 38
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.2e-43 Score=300.09 Aligned_cols=193 Identities=19% Similarity=0.284 Sum_probs=182.0
Q ss_pred CceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 40 GTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 40 G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
.+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hh--ccCccceEEEEEEEeC-CCCEEEEEcCCCCccccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHH
Q 024919 120 LTLLKSHL-FK--YQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLV 195 (260)
Q Consensus 120 a~~l~~~~-~~--~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~ 195 (260)
++++++.+ +. .++||++++|+||||+ +||+||.+||.|++.+++++++|+|+.+++++||+.|+++||++||++++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~ 160 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELL 160 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 99998765 33 2369999999999997 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCC
Q 024919 196 CEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLP 232 (260)
Q Consensus 196 ~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~ 232 (260)
++||+.+.++|..++++++|++|+++|++.++++...
T Consensus 161 ~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~~~ 197 (201)
T 1iru_K 161 RKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFP 197 (201)
T ss_dssp HHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBCCC
T ss_pred HHHHHHHHhhccccCCceEEEEEcCCCeEEeecccCC
Confidence 9999999999999999999999999999988876533
No 39
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.8e-43 Score=297.22 Aligned_cols=194 Identities=29% Similarity=0.476 Sum_probs=184.2
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
||+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccceEEEEEEEeC-CCCEEEEEcCCCCcccc-CeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 024919 121 TLLKSHLFKYQGHVQAALVLGGVDA-TGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEA 198 (260)
Q Consensus 121 ~~l~~~~~~~~~p~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~a 198 (260)
+++++.++++++||++++|+||||+ +||+||. |+|++.++ .++++|+|+.+++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~a 158 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNA 158 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998 5799999 99997665 566679999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeCCC--EEEeccccCCCCCc
Q 024919 199 ICSGIFNDLGSGSNVDICVITKGD--KEYLRNHQLPNPRT 236 (260)
Q Consensus 199 l~~a~~~d~~~~~~iei~iitk~g--~~~~~~~~~~~~~~ 236 (260)
|+.+.++|..++++++|++|+++| .+++++.+++..|.
T Consensus 159 l~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 159 ITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 999999999999999999999999 46699999998774
No 40
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=5.8e-43 Score=296.69 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=180.3
Q ss_pred ccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCC
Q 024919 35 SYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES 114 (260)
Q Consensus 35 ~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i 114 (260)
..+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.++++++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (205)
T 1iru_J 3 IMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQI 82 (205)
T ss_dssp CTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred cccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 45689999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcc-CccceEEEEEEEeC--CCCEEEEEcCCCCcccc-CeEEEcCChHHHHHHHHhhcCCCCCHHH
Q 024919 115 RVVTALTLLKSHLFKYQ-GHVQAALVLGGVDA--TGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEE 190 (260)
Q Consensus 115 ~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~e 190 (260)
+++.+++++++.++.++ .||++++|+||||+ +||+||.+||.|++.++ .|+++|+|+.+++++||+.|+++||++|
T Consensus 83 ~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 162 (205)
T 1iru_J 83 KPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH 162 (205)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence 99999999999997543 59999999999995 67999999999998655 6799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEE
Q 024919 191 GISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (260)
Q Consensus 191 ai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~ 225 (260)
|++++++||+.+.++|..++++++|++|+++|+++
T Consensus 163 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 163 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred HHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 99999999999999999999999999999999754
No 41
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.3e-42 Score=294.40 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=179.6
Q ss_pred ccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCC
Q 024919 35 SYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRES 114 (260)
Q Consensus 35 ~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i 114 (260)
+++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+ |++|+++|..+|++.+++++|.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 81 (204)
T 1ryp_J 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI 81 (204)
T ss_dssp GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 56789999999999999999999999999998888999999999 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcc-CccceEEEEEEEeC--CCCEEEEEcCCCCcccc-CeEEEcCChHHHHHHHHhhcCCCCCHHH
Q 024919 115 RVVTALTLLKSHLFKYQ-GHVQAALVLGGVDA--TGPHLHTIYPHGSTDTL-PFATMGSGSLAAMAVFESKYREGLTKEE 190 (260)
Q Consensus 115 ~~~~la~~l~~~~~~~~-~p~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~e 190 (260)
+++.+++++++.+|..+ .||++++|+||||+ +||+||.+||.|++.++ .++++|+|+.+++++||+.|+++||++|
T Consensus 82 ~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 161 (204)
T 1ryp_J 82 EPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPED 161 (204)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHH
Confidence 99999999999987543 59999999999996 67999999999998655 7799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEE
Q 024919 191 GISLVCEAICSGIFNDLGSGSNVDICVITKGDKEY 225 (260)
Q Consensus 191 ai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~ 225 (260)
|++++++||..+.++|..++++++|++|+++|++.
T Consensus 162 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 162 LFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 99999999999999999899999999999999764
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.5e-43 Score=315.16 Aligned_cols=225 Identities=20% Similarity=0.235 Sum_probs=168.0
Q ss_pred CCCCCCCCcccc-------Cchhh-----HH--HhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeeccc
Q 024919 6 IGIPPKGGFSFD-------LCRRN-----DM--LSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNC 71 (260)
Q Consensus 6 ~~~~~~~g~~fs-------p~Gr~-----~Q--veya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~ 71 (260)
-+.|..+|++|. |+.-. ++ +||| .+ +++|+|+|||+++||||||+|+|.++|.++.+++.
T Consensus 15 ~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya-----~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~ 88 (291)
T 2jay_A 15 SGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGD-----AQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDV 88 (291)
T ss_dssp -------------------------------------------------CCEEEEEETTEEEEEECCC--------CCCC
T ss_pred CCCCCCCCccHHHHhhhcChhhccccccccCcCcccc-----cc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCc
Confidence 367888999884 33221 11 6899 88 99999999999999999999999999989999999
Q ss_pred CeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhhcc----CccceEEEEEEEeCC-
Q 024919 72 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKSHLFKYQ----GHVQAALVLGGVDAT- 146 (260)
Q Consensus 72 ~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~----~p~~v~~ivaG~D~~- 146 (260)
+||++|++|++|+++|..+|++.++++++.+++.|++.++++++++.+++++++.++.++ +||++++|+||||++
T Consensus 89 ~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g 168 (291)
T 2jay_A 89 RKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHA 168 (291)
T ss_dssp CCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTC
T ss_pred ccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999998753 589999999999975
Q ss_pred C-----CEEEEEcCCCCcc--ccCeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E----
Q 024919 147 G-----PHLHTIYPHGSTD--TLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSN--V---- 213 (260)
Q Consensus 147 g-----p~Ly~iDp~G~~~--~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~--i---- 213 (260)
+ |+||.+||+|++. +++++++|+|+.+++++||+.|+++||++||++++++||+.+.++|..+++. +
T Consensus 169 ~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~ 248 (291)
T 2jay_A 169 SDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIF 248 (291)
T ss_dssp SCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------C
T ss_pred CcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccC
Confidence 4 8999999999988 8999999999999999999999999999999999999999999999887654 2
Q ss_pred -EEEEEeCCCEEEeccccCCCCCc
Q 024919 214 -DICVITKGDKEYLRNHQLPNPRT 236 (260)
Q Consensus 214 -ei~iitk~g~~~~~~~~~~~~~~ 236 (260)
+|++|+++|++++++.++.....
T Consensus 249 ~~v~vi~~dg~~~l~~~ei~~~~~ 272 (291)
T 2jay_A 249 PTAVIIDADGAVDVPESRIAELAR 272 (291)
T ss_dssp CEEEEEETTEEEECCHHHHHHHHH
T ss_pred CEEEEEECCCeEEcCHHHHHHHHH
Confidence 79999999999999888877643
No 43
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2.2e-43 Score=307.53 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=182.1
Q ss_pred ccccCchhhH-HHhhcCCCCCCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHH
Q 024919 14 FSFDLCRRND-MLSKKGIVPPPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADT 92 (260)
Q Consensus 14 ~~fsp~Gr~~-Qveya~~~~~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 92 (260)
|.-|||.-.- ++||| ++|+++|+|+|||+++||||||+|+| .++.+|||+|++|++|+++|+.+|+
T Consensus 5 ~~~~p~~~~~~r~EYA-----~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~ 71 (248)
T 3mi0_A 5 YFISPEQAMRERSELA-----RKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEF 71 (248)
T ss_dssp ---CHHHHHHHHHHHH-----HHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHH
T ss_pred ccCCHHHhcccchHHH-----HHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHH
Confidence 3446665444 68999 99999999999999999999999998 3478999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcC-CCCCHHHHHHHHHHHH----hhccCccceEEEEEEEeC----CCCEEEEEcCCCCccc-c
Q 024919 93 EAVTDMVSSQLQLHRYHTG-RESRVVTALTLLKSHL----FKYQGHVQAALVLGGVDA----TGPHLHTIYPHGSTDT-L 162 (260)
Q Consensus 93 ~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~l~~~~----~~~~~p~~v~~ivaG~D~----~gp~Ly~iDp~G~~~~-~ 162 (260)
+.+.+.++.+++.|++.++ ++++++.+++++++.+ ++..|||+|++||||||+ +||+||.+||+|++.+ +
T Consensus 72 ~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~ 151 (248)
T 3mi0_A 72 DNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEP 151 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecc
Confidence 9999999999999999999 8999999999998543 234589999999999998 7899999999999995 9
Q ss_pred CeEEEcCChHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-------hhcCCCCCcEEEEEEeCCC----EEEeccccC
Q 024919 163 PFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGI-------FNDLGSGSNVDICVITKGD----KEYLRNHQL 231 (260)
Q Consensus 163 ~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~al~~a~-------~~d~~~~~~iei~iitk~g----~~~~~~~~~ 231 (260)
+++|+|+|+..++++||+.|+++||++||++++++||+.+. +++ .++.+++|++|+++| .+++++.++
T Consensus 152 ~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~~~ei 230 (248)
T 3mi0_A 152 HFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRITGSAL 230 (248)
T ss_dssp SEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHH
T ss_pred cEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECCHHHH
Confidence 99999999999999999999999999999999999999998 554 568999999999998 678877776
Q ss_pred CCCC
Q 024919 232 PNPR 235 (260)
Q Consensus 232 ~~~~ 235 (260)
....
T Consensus 231 ~~~l 234 (248)
T 3mi0_A 231 QALL 234 (248)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 6553
No 44
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=7e-43 Score=311.06 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=190.1
Q ss_pred CCccccCCceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCC
Q 024919 33 PPSYRKTGTTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGR 112 (260)
Q Consensus 33 ~~~a~~~G~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~ 112 (260)
+.+|+++|+|+|||+++||||||+|+|.++|+++..++.+||++|++|++|+++|..+|++.++++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc----cCccceEEEEEEEeCC-C-----CEEEEEcCCCCcccc--CeEEEcCChHHHHHHHHh
Q 024919 113 ESRVVTALTLLKSHLFKY----QGHVQAALVLGGVDAT-G-----PHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFES 180 (260)
Q Consensus 113 ~i~~~~la~~l~~~~~~~----~~p~~v~~ivaG~D~~-g-----p~Ly~iDp~G~~~~~--~~~aiG~g~~~~~~~Le~ 180 (260)
+++++.+++++++.++.+ .+||++++||||||++ + |+||.+||+|++.++ +++++|+|+.+++++||+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~ 217 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHH
Confidence 999999999999988754 4799999999999975 6 899999999999998 999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEeCCCEEEeccccCCCCC
Q 024919 181 KYREGLTKEEGISLVCEAICSGIFNDLGSGSN--V-----DICVITKGDKEYLRNHQLPNPR 235 (260)
Q Consensus 181 ~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~--i-----ei~iitk~g~~~~~~~~~~~~~ 235 (260)
.|+++||++||++++++||+.+.++|..+++. + +|++|+++|++++++.+++...
T Consensus 218 ~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l 279 (294)
T 1q5r_H 218 IYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELA 279 (294)
T ss_dssp HCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHH
Confidence 99999999999999999999999999887654 6 9999999999999888877663
No 45
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-41 Score=294.11 Aligned_cols=195 Identities=21% Similarity=0.234 Sum_probs=183.5
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEecCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTAL 120 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la 120 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|++||..+|++.++++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----cCccceEEEEEEEeCC-C-----CEEEEEcCCCCcccc--CeEEEcCChHHHHHHHHhhcCCCCCH
Q 024919 121 TLLKSHLFKY----QGHVQAALVLGGVDAT-G-----PHLHTIYPHGSTDTL--PFATMGSGSLAAMAVFESKYREGLTK 188 (260)
Q Consensus 121 ~~l~~~~~~~----~~p~~v~~ivaG~D~~-g-----p~Ly~iDp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~s~ 188 (260)
+++++.++.+ .+||++++|+||||++ | |+||.+||+|++.++ +++|+|+|+.+++++||+.|+++||+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 9999998754 4799999999999975 7 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEeCCCEEEeccccCCCCC
Q 024919 189 EEGISLVCEAICSGIFNDLGSGSN--V-----DICVITKGDKEYLRNHQLPNPR 235 (260)
Q Consensus 189 ~eai~l~~~al~~a~~~d~~~~~~--i-----ei~iitk~g~~~~~~~~~~~~~ 235 (260)
+||++++++||..+.++|..+++. + +|++|+++|++++++.+++...
T Consensus 161 eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~ 214 (235)
T 1q5q_H 161 ETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELA 214 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHH
Confidence 999999999999999999887753 2 9999999999998888876653
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=6.4e-35 Score=242.72 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=151.3
Q ss_pred cCCceEEEEEeCCEEEEEEcCCCcCCce-eeecccCeeEEe-cCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 024919 38 KTGTTIVGLIFQNGVILGADTRATAGSI-VCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR 115 (260)
Q Consensus 38 ~~G~tvIgI~~~dgVvlaad~r~~~g~~-i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~ 115 (260)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++|+++|..+|++.+.+++|.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 6799999999999999999999999888 999999999999 999999999999999999999999999987 2 23
Q ss_pred HHHHHHHHHHHHhh--ccCccceEEEEEEEeCCCCEEEEEcCCCCccc--cCeEEEcCChHHHHHHHHhhcCC---CCCH
Q 024919 116 VVTALTLLKSHLFK--YQGHVQAALVLGGVDATGPHLHTIYPHGSTDT--LPFATMGSGSLAAMAVFESKYRE---GLTK 188 (260)
Q Consensus 116 ~~~la~~l~~~~~~--~~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~---~~s~ 188 (260)
++.++ .+.+.+++ +.|||++++|+| ++|+||.+||+|++.+ +++.|+|+|+.+++++||+.|++ +||.
T Consensus 78 ~~~~~-~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ 152 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSA 152 (180)
T ss_dssp HHHHH-HHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHHHH-HHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCH
Confidence 43333 45555544 357999999999 4799999999999988 59999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 024919 189 EEGISLVCEAICSGIFNDLGSGSNVDICVIT 219 (260)
Q Consensus 189 ~eai~l~~~al~~a~~~d~~~~~~iei~iit 219 (260)
+| ++++||+.+.+||..++++++|++|+
T Consensus 153 ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 153 SE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp HH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 99 47799999999999999999999883
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.8e-34 Score=237.89 Aligned_cols=165 Identities=22% Similarity=0.219 Sum_probs=149.6
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEe-cCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++| ++|++|+++|..+|++.+.+++|.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999999999999999999 99999999999999999999999999998754 26667
Q ss_pred HHHHHHHHhhc--cCccceEEEEEEEeCCCCEEEEEcCCCCccccC--eEEEcCChHHHHHHHHhhcC-CCCCHHHHHHH
Q 024919 120 LTLLKSHLFKY--QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLP--FATMGSGSLAAMAVFESKYR-EGLTKEEGISL 194 (260)
Q Consensus 120 a~~l~~~~~~~--~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~--~~aiG~g~~~~~~~Le~~~~-~~~s~~eai~l 194 (260)
+++.+ .++++ .+||++++|++ | ||+||.+||+|++.+++ +.++|+|+.+++++||+.|+ ++||. +++
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l 147 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REI 147 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHH
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHH
Confidence 77655 45443 35799998888 5 89999999999999987 99999999999999999999 99997 678
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEE
Q 024919 195 VCEAICSGIFNDLGSGSNVDICVI 218 (260)
Q Consensus 195 ~~~al~~a~~~d~~~~~~iei~ii 218 (260)
+++||+.+.+||..++++++|+++
T Consensus 148 ~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 148 VEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHhCcccCCeEEEEEC
Confidence 999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.6e-34 Score=237.70 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=150.0
Q ss_pred ceEEEEEeCCEEEEEEcCCCcCCceeeecccCeeEEe-cCcEEEEecCChHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 024919 41 TTIVGLIFQNGVILGADTRATAGSIVCDKNCEKIHYM-APNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTA 119 (260)
Q Consensus 41 ~tvIgI~~~dgVvlaad~r~~~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 119 (260)
+|+|||+++||||||+|+|.++|.++.+++.+||++| ++|++|+++|..+|++.+.+++|.+++.|+. ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999989999999999999 9999999999999999999999999999886 44556
Q ss_pred HHHHHHHHhhc--cCccceEEEEEEEeCCCCEEEEEcCCCCccccC---eEEEcCChHHHHHHHHhhcC-CCCCHHHHHH
Q 024919 120 LTLLKSHLFKY--QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLP---FATMGSGSLAAMAVFESKYR-EGLTKEEGIS 193 (260)
Q Consensus 120 a~~l~~~~~~~--~~p~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~---~~aiG~g~~~~~~~Le~~~~-~~~s~~eai~ 193 (260)
+..+++.++++ .||++ ++++|+| +|+||.+||+|++.+++ +.|+|+|+.+++++||+.|+ ++||.+ +
T Consensus 75 ~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~ 147 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---E 147 (174)
T ss_dssp HHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---H
T ss_pred HHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---H
Confidence 66677777654 34654 5777887 79999999999999988 99999999999999999999 999955 7
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeC
Q 024919 194 LVCEAICSGIFNDLGSGSNVDICVITK 220 (260)
Q Consensus 194 l~~~al~~a~~~d~~~~~~iei~iitk 220 (260)
++++||+.+.++|..++++++|++|+.
T Consensus 148 l~~~al~~a~~rd~~sg~~i~v~~i~~ 174 (174)
T 1g3k_A 148 IVEKSLRIAGDICVFTNTNFTIEELPN 174 (174)
T ss_dssp HHHHHHHHHHHHCTTCCSCCEEEEEC-
T ss_pred HHHHHHHHHHHhccccCCceEEEEecC
Confidence 999999999999999999999999863
No 49
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=28.52 E-value=58 Score=23.26 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccccCCCCCccccCCccccCC
Q 024919 187 TKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNHQLPNPRTYISSKGYSFPK 247 (260)
Q Consensus 187 s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (260)
+.+.|+..|+..+. | -...+.|+++-.+-+...+|.+....+.=.-.|.||.|.
T Consensus 32 d~e~Al~~Ar~~f~----R---R~e~vsiWVVp~~~I~~~~p~e~~~~f~~~~dK~YR~~t 85 (96)
T 3egr_A 32 DAQQALHMARDVYT----R---RQEGVSIWVVPSTAITASAPEEKPELFDPMADKIYRHPT 85 (96)
T ss_dssp SHHHHHHHHHHHTT----T---TCTTCEEEEEEGGGCEECCC-------------------
T ss_pred CHHHHHHHHHHHhc----c---ccCCceEEEeeHHHeeecChhhcccccCCCCCCcccCcc
Confidence 45666677665542 1 234589999999998888887765332222355555554
No 50
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=28.03 E-value=1.1e+02 Score=23.87 Aligned_cols=51 Identities=6% Similarity=0.032 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEEEeccc
Q 024919 174 AMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKEYLRNH 229 (260)
Q Consensus 174 ~~~~Le~~~~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~~~~~~ 229 (260)
+.++++..+. .+|.+||.+.+++.|+....-+ +.-.+.+++.+|.-+..|.
T Consensus 36 a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g~~l~hP~ 86 (181)
T 3ub6_A 36 LEQGIHEYYK-SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNGVVLFDPV 86 (181)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTCBEEECTT
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCCCEEEeCC
Confidence 3344444333 4899999999999998665321 1246788899998887774
No 51
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.98 E-value=69 Score=21.55 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCEE
Q 024919 185 GLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDKE 224 (260)
Q Consensus 185 ~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~~ 224 (260)
.|+.+||+..+.+.|..+...-....+.-.+.+|+-.|.+
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~h 46 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNH 46 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 6899999999988888776411011234478899987753
No 52
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=23.65 E-value=1.3e+02 Score=24.17 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 183 REGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 183 ~~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
.+.+|+++|.+++..++..+.++. -++-|.|+|..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCC
Confidence 357999999999999999988764 4799999998883
No 53
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=21.28 E-value=90 Score=23.71 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCE
Q 024919 184 EGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVITKGDK 223 (260)
Q Consensus 184 ~~~s~~eai~l~~~al~~a~~~d~~~~~~iei~iitk~g~ 223 (260)
+.+|+++|.+++..+...+.++ +-++-|.|++..|.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ 45 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGN 45 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCC
Confidence 3589999999999999988765 35799999998883
Done!