BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024921
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 54 TSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGG 113
+SS + + V SHY+ ++ L N +++F + L C +D+ +S
Sbjct: 86 SSSTIDMIVIAIQVASHYEVVMPLL--EFSKNNPNLKYLFVEW-ALAC-SLDQAESIYKA 141
Query: 114 LVLLYEKILKTICGLPGDKKDYVTIM--------IDDISLVEVAANGG 153
E+ ++TI L G K Y+ I DI+ +E+A NGG
Sbjct: 142 AA---ERGVQTIISLQGRKSPYILRAKELISQGYIGDINSIEIAGNGG 186
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 54 TSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGG 113
+SS + + V SHY+ ++ L N +++F + L C +D+ +S
Sbjct: 86 SSSTIDMIVIAIQVASHYEVVMPLL--EFSKNNPNLKYLFVEW-ALAC-SLDQAESIYKA 141
Query: 114 LVLLYEKILKTICGLPGDKKDYV--------TIMIDDISLVEVAANGG 153
E+ ++TI L G K Y+ I DI+ +E+A NGG
Sbjct: 142 AA---ERGVQTIISLQGRKSPYILRAKELISQGYIGDINSIEIAGNGG 186
>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|C Chain C, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|D Chain D, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|E Chain E, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|F Chain F, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
Length = 438
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 54 TSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGG 113
+SS + + V SHY+ ++ L N +++F + L C +D+ +S
Sbjct: 86 SSSTIDMIVIAIQVASHYEVVMPLL--EFSKNNPNLKYLFVEW-ALAC-SLDQAESIYKA 141
Query: 114 LVLLYEKILKTICGLPGDKKDYVTIM--------IDDISLVEVAANGG 153
E+ ++TI L G K Y+ I DI+ +E+A NGG
Sbjct: 142 AA---ERGVQTIISLQGRKSPYILRAKELISQGYIGDINSIEIAGNGG 186
>pdb|4EJS|C Chain C, Structure Of Yeast Elongator Subcomplex Elp456
Length = 277
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 170 EFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTS 229
E+D S+ + N ++ Y S + I M I + PL TG A DV G L V G
Sbjct: 198 EYDASVHSSNLQNFYKS----SFIKSM-----INLNLNPLKTGFAKDVTGSLHVCRGGAP 248
Query: 230 HRLGRSGNKIHNFHYKVKENTVEYFY 255
+ S +H V EN EY Y
Sbjct: 249 --IATSNTSLH-----VVEN--EYLY 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,959,299
Number of Sequences: 62578
Number of extensions: 321832
Number of successful extensions: 651
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 6
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)