BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024921
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9Y2|ELP6_ARATH Elongator complex protein 6 OS=Arabidopsis thaliana GN=ELP6 PE=1
SV=1
Length = 262
Score = 323 bits (829), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 155/260 (59%), Positives = 200/260 (76%), Gaps = 3/260 (1%)
Query: 3 NQYLNLLDRALGLDGP-SEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIF 61
++ LNLLD ALG D + P PL+G+V+LIEDCVETSGSFVLHQL+KR LS SS+ +IF
Sbjct: 2 DRSLNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSSNSSDALIF 61
Query: 62 VAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKI 121
+AFA PFSHYDRILRKLGCNL T + N R +FFDMLM++C D D+ + + + L+ +I
Sbjct: 62 LAFARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLFREI 121
Query: 122 LKTICGLPGDKKDYVTIMIDDISLVEVAANGG-SDYVLDFLHYCHALTSEFDCSLITLNH 180
+T+ L +T+M+DD+SL+E+A G SD+VLDFLHYCH L+SE +CSL+ LNH
Sbjct: 122 QETVRKLQSVTSGNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVILNH 181
Query: 181 EDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHR-LGRSGNKI 239
EDIY+SMERP +LQM LAD++IKAEPL++GLA DVHGQLTVLNKG S+ G S NK+
Sbjct: 182 EDIYASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSRNKL 241
Query: 240 HNFHYKVKENTVEYFYPGSR 259
NF +++KEN ++YFYPG R
Sbjct: 242 QNFQFRIKENGIDYFYPGCR 261
>sp|Q8BK75|ELP6_MOUSE Elongator complex protein 6 OS=Mus musculus GN=Elp6 PE=2 SV=1
Length = 266
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85
G + L+ D +T GSF++H + L + FVA FSHY+ + +KLG +L
Sbjct: 19 GTLTLLCD-AKTDGSFLVHHFLSFYLKANCK--VCFVALVQSFSHYNIVGQKLGVSLTAA 75
Query: 86 RDNKRFIFFDMLMLRCP----DVDEG-------KSSEGGLVLLYEKILKTICGLPGDKKD 134
RD + +F + L DE ++ G L LY I T+ P D ++
Sbjct: 76 RDRGQLVFLEGLKSSVEVLFHSQDEPHPLQFLREAGTGNLQSLYTFIQDTL--KPADSEE 133
Query: 135 ----YVTIMIDDISLVEVAANGGSDYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSME- 188
Y +++D++S++ ++ G+ VLDF+ YC A + E +++ L H+ ++ E
Sbjct: 134 SPWKYPVLLVDNLSVL-LSLGVGAVAVLDFMQYCRATVCCELKGNVVALVHDTEGATDEG 192
Query: 189 RPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKE 248
TL+ + + + ++++AE L+TG DVHGQL++L + S + + + YK+++
Sbjct: 193 NDTLLNGLSHQSHLILRAEGLATGFCKDVHGQLSILWRRPSRSTAQRAQSL-TYQYKIQD 251
Query: 249 NTVEYFYPG 257
V +F G
Sbjct: 252 KNVSFFAKG 260
>sp|B2RYG8|ELP6_RAT Elongator complex protein 6 OS=Rattus norvegicus GN=Elp6 PE=2 SV=1
Length = 266
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 122/249 (48%), Gaps = 24/249 (9%)
Query: 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85
G++ L+ D +T GSF++H + L + FVA FSHY+ + +KLG +L
Sbjct: 19 GKLTLLCD-AKTDGSFLVHHFLSFYLKANCK--VCFVALVQSFSHYNIVGQKLGVSLTAA 75
Query: 86 RDNKRFIFFDMLMLRCPDVDEGK-----------SSEGGLVLLYEKILKTICGLPGDKKD 134
R+ + +F + L + + + G L LY I T+ P D +
Sbjct: 76 RERGQLVFLEGLKSSVEVLFHSQEEPHPLQFLREAGAGNLQSLYTFIQDTL--KPADSGE 133
Query: 135 Y----VTIMIDDISLVEVAANGGSDYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSMER 189
+++D++S++ ++ G+ VLDF+ YC A + E +++ L H+ + E
Sbjct: 134 SPWKCPVLLVDNLSVL-LSLGVGAVAVLDFMQYCRATVCCELKGNVVALVHDTEGAEDEE 192
Query: 190 PTLILQ-MEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKE 248
++L + + + ++++ + L+TG DVHGQL++L + +S + + + YK+++
Sbjct: 193 NNILLNGLSHQSHLILRTQGLATGFCKDVHGQLSILWRRSSQPTAQRARSL-TYQYKIQD 251
Query: 249 NTVEYFYPG 257
V +F G
Sbjct: 252 KNVSFFAKG 260
>sp|Q28CX0|ELP6_XENTR Elongator complex protein 6 OS=Xenopus tropicalis GN=elp6 PE=2 SV=2
Length = 266
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 18/246 (7%)
Query: 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85
G+ L+ D +T GSF++H + L + FVA FSHY + +KLG NL +
Sbjct: 19 GKFTLLCDS-KTDGSFLVHHFLSYYLRAGCR--VCFVALVQSFSHYSIVAQKLGVNLSSA 75
Query: 86 RDNKRFIFF-------DMLMLRCPDVDEGK-----SSEGGLVLLYEKILKTICGLPGDKK 133
+D + +F D+L P+ + + L LY + + G
Sbjct: 76 KDEGQLVFLEGLRSYTDLLFGDNPEAEVTNPLCFLRAGSDLKPLYSFVSAALAPSAGQSW 135
Query: 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSMERPTL 192
+++DD+S++ ++ +LDF+HYC A + +++ +++ L H S E L
Sbjct: 136 KCPVLILDDVSVL-LSLGVPPLQLLDFMHYCRATVCTQYQGNVVCLVHGAEESGDEEKEL 194
Query: 193 ILQ-MEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTV 251
+ + + + + +++ AE LS+G +VHGQL + S R + + YK+++ V
Sbjct: 195 LRRSLSHQSQVILWAEGLSSGFCKEVHGQLKIFRGAVSSGKKRGQTQPEIYQYKIQDKHV 254
Query: 252 EYFYPG 257
+F G
Sbjct: 255 TFFARG 260
>sp|Q0IHA2|ELP6_XENLA Elongator complex protein 6 OS=Xenopus laevis GN=elp6 PE=2 SV=1
Length = 265
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 21/247 (8%)
Query: 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85
G+ L+ D T GSF++H + L + FVA FSHY+ + +KLG NL +
Sbjct: 19 GKFTLLCD-SNTDGSFLVHHFLSYYLRAGCR--VCFVALVQSFSHYNIVAQKLGVNLSSA 75
Query: 86 RDNKRFIFFDMLMLRCPDVDEGKSSEG-------------GLVLLYEKILKTICGLPGDK 132
+D + +F + L D+ G SE L LY + + G
Sbjct: 76 KDEGQLVFLEGLK-SYTDLLFGDKSEAEETNPLCFLRAGSDLRPLYSFVSAALAPSAGQP 134
Query: 133 KDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSMERPT 191
++I D V ++ S VLDF+HYC A + +++ +++ L H S E
Sbjct: 135 WK-CPVLILDDLSVLLSLGVTSLQVLDFMHYCRATVCTQYKGNVLCLVHGAEESGDEENE 193
Query: 192 LILQ-MEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENT 250
L+L+ + + + ++++AE LSTG DVHGQL ++ +G R N+ + YK+++
Sbjct: 194 LVLRSLSHQSHLILQAEGLSTGFCKDVHGQLKII-RGAVSSGKRGKNQPEIYQYKIQDKH 252
Query: 251 VEYFYPG 257
V +F G
Sbjct: 253 VAFFARG 259
>sp|Q0PNE2|ELP6_HUMAN Elongator complex protein 6 OS=Homo sapiens GN=ELP6 PE=1 SV=1
Length = 266
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVT 84
G++ L+ D +T GSF++H + L + FVA FSHY + +KLG +L
Sbjct: 18 QGKLTLLCD-AKTDGSFLVHHFLSFYLKANCK--VCFVALIQSFSHYSIVGQKLGVSLTM 74
Query: 85 QRDNKRFIFFDMLMLRCPDVDEGK-----------SSEGGLVLLYEKILKTICGLPGDKK 133
R+ + +F + L V + + ++ G L L+E + + + + +
Sbjct: 75 ARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEA 134
Query: 134 DYVTIMIDDISLVEVAANG-GSDYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSMERPT 191
+ ++ L + + G G+ VLDF+HYC A + E +++ L H+ + E
Sbjct: 135 RWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEEND 194
Query: 192 LILQ-MEYLADILIKAEPLSTGLATDVHGQLTVLNKGTS----HRLGRSGNKIHNFHYKV 246
++L + + + ++++AE L+TG DVHGQL +L + S HR ++ + YK+
Sbjct: 195 ILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHR-----DQSFTYQYKI 249
Query: 247 KENTVEYFYPG 257
++ +V +F G
Sbjct: 250 QDKSVSFFAKG 260
>sp|Q0P424|ELP6_DANRE Elongator complex protein 6 OS=Danio rerio GN=elp6 PE=2 SV=2
Length = 264
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 28/251 (11%)
Query: 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85
G +L+ D + SF++H + L + F+ FSHY + ++LG +L
Sbjct: 19 GDFILLSD-RQADASFLIHHYLSFYLRAGCK--VCFLGLVQSFSHYSAVGQRLGVSLTQA 75
Query: 86 RDNKRFIFFDML-----MLRCPDVDEG-------KSSEGGLVLLYEKILKTICGLPGDKK 133
R+ + +F + L + D EG +S GL L+ + ++C GD
Sbjct: 76 REKGQLVFLEGLKDSIGAILKEDTSEGTQALSYLRSPRAGLEGLFRFVESSLCQ-SGDDG 134
Query: 134 DYVTIMIDDIS-LVEVAANGGSDYVLDFLHYCHA-LTSEFDCSLITLNH--EDIYSSMER 189
V I IDD+S L+ + + G+ +LDF YC A + SE +++ L E+ E
Sbjct: 135 PPVLI-IDDLSVLLSLGVSAGA--ILDFTLYCRATVCSELQGNMVILVRCEEEDADDDEE 191
Query: 190 PTLILQ--MEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVK 247
+LQ + + + + E L TG D+HGQ+ V + + + N+ F +KV
Sbjct: 192 GLNLLQRGLVHQCHLALHVEGLPTGYCRDIHGQMEVWWRQGEN---DAYNQRKIFQFKVH 248
Query: 248 ENTVEYFYPGS 258
+ +F G+
Sbjct: 249 DKGASFFTRGT 259
>sp|Q9GPT6|ELP6_DICDI Elongator complex protein 6 OS=Dictyostelium discoideum GN=elp6
PE=3 SV=1
Length = 338
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 138 IMIDDISLVE----VAANGGSDYVLDFLHYCHALTSEFD--CSLITLNHEDIYSSMERPT 191
+ID ++L+E +G + +L+FL YCH E CS+I L H D E
Sbjct: 215 FIIDGLNLLESHYSTNPSGSNMDILNFLQYCHNYIKENSTTCSMIILYHSDC---DEDSK 271
Query: 192 LILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTV 251
++Y +D+ I L +G + D+ GQL + K + N I HY+ +N++
Sbjct: 272 FFNLLQYESDLTINITGLKSGYSKDIDGQLNFIQKDEKNNTFTRVNPI---HYQALDNSI 328
Query: 252 EYFYPGSRV 260
+F GSR+
Sbjct: 329 RFFSMGSRI 337
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVII-----------------FVAFANP 67
SG+++L+ D +E+ GSF++H ++ T+S +
Sbjct: 27 SGKLILVSDTLESEGSFLIHYFLQSIFKATTSTNSSTNNNNSNNSGGVGGGACLLGLNQS 86
Query: 68 FSHYDRILRKLGCNLVTQRDNKRFIFFDML 97
+Y + RKLG NL T+ + F F + L
Sbjct: 87 LYNYFNVGRKLGYNLTTEYNKGNFTFINGL 116
>sp|Q0I885|CH601_SYNS3 60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1
PE=3 SV=1
Length = 553
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 77 KLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLY--EKILKTICGLPGDKKD 134
K+G T+ N++ D L V+EG + GG LL+ ++ GL GD+K
Sbjct: 378 KVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLHISAELDALTSGLEGDQKT 437
Query: 135 YVTIMIDDIS--LVEVAANGGS--DYVLDFLHYC----HALTSEFD 172
V I+ +S L ++A N GS D V+D + +ALT F+
Sbjct: 438 GVEIVQRALSAPLRQIAENAGSNGDVVVDRVRNSGEGFNALTGNFE 483
>sp|C1KYD1|GLMU_LISMC Bifunctional protein GlmU OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=glmU PE=3 SV=1
Length = 457
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 2 ENQYLNLLDRALGLDGPSEPWP-LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNV 58
EN Y+++ D +G D EP L G V+ +DCV TSGS +++ ++ + +S++
Sbjct: 259 ENTYIDI-DVKIGQDTVIEPGVMLRGETVIGDDCVVTSGSEIVNSVIGERVHVKTSSI 315
>sp|C1CZP1|CH60_DEIDV 60 kDa chaperonin OS=Deinococcus deserti (strain VCD115 / DSM 17065
/ LMG 22923) GN=groL PE=3 SV=1
Length = 549
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 29/169 (17%)
Query: 1 MENQYLNLLDRALGL----------DGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRS 50
+EN + +L RA + DG E + RV I+ ++T+ S + ++
Sbjct: 307 LENTGMEMLGRAARIRITKDETTIVDGKGEQAQIDARVNAIKGELDTTDSDYAREKLQER 366
Query: 51 LSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSS 110
L+ S V + ++G T+ K+ + D L V+EG +
Sbjct: 367 LAKLSGGVAVI---------------RVGAATETELKEKKHRYEDALSTARSAVEEGIVA 411
Query: 111 EGGLVLLY--EKILKTICGLPGDKKDYVTIMIDDIS--LVEVAANGGSD 155
GG LL + K GL GD+ I+I + ++A N G +
Sbjct: 412 GGGTTLLRIIPAVRKAAEGLQGDEATGARILIRALEEPARQIAVNAGEE 460
>sp|Q92F69|GLMU_LISIN Bifunctional protein GlmU OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=glmU PE=3 SV=1
Length = 457
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 2 ENQYLNLLDRALGLDGPSEPWP-LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNV 58
EN Y+++ D +G D EP L G+ V+ +DCV TSGS ++ ++ + +S++
Sbjct: 259 ENTYIDI-DVKIGQDTVIEPGVMLRGKTVIGDDCVVTSGSEIVSSVIGERVHVRNSSI 315
>sp|Q9KLC6|CH602_VIBCH 60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=groL2 PE=3 SV=1
Length = 530
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 15 LDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRI 74
+DG +EP L R+ I+ +E + S +++ ++ S V +
Sbjct: 333 VDGAAEPSALQDRIAQIQHQLEHTTSQYDRDKLQQRIAKLSGGVAVI------------- 379
Query: 75 LRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKD 134
K+G + K+ D L V+EG + GG+ LL KI + L GD D
Sbjct: 380 --KIGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALL--KIANELSNLQGDNDD 435
>sp|A5F0I2|CH601_VIBC3 60 kDa chaperonin 1 OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=groL1 PE=3 SV=1
Length = 530
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 15 LDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRI 74
+DG +EP L R+ I+ +E + S +++ ++ S V +
Sbjct: 333 VDGAAEPSALQDRIAQIQHQLEHTTSQYDRDKLQQRIAKLSGGVAVI------------- 379
Query: 75 LRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKD 134
K+G + K+ D L V+EG + GG+ LL KI + L GD D
Sbjct: 380 --KIGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALL--KIANELSNLQGDNDD 435
>sp|Q724L5|GLMU_LISMF Bifunctional protein GlmU OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=glmU PE=3 SV=1
Length = 457
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 2 ENQYLNLLDRALGLDGPSEPWP-LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNV 58
EN Y+++ D +G D EP L G V+ +DCV TSGS +++ ++ + +S++
Sbjct: 259 ENTYIDI-DVKIGQDTVIEPGVMLRGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSI 315
>sp|P48219|CH60_YEREN 60 kDa chaperonin OS=Yersinia enterocolitica GN=groL PE=3 SV=1
Length = 550
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 10 DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69
D + +DG + + GRV I +E + S + ++ ++ + V +
Sbjct: 328 DTTIIIDGVGDEAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVI-------- 379
Query: 70 HYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLP 129
K+G + K+ D L V+EG + GG+ L+ T GL
Sbjct: 380 -------KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAASAITAAGLK 432
Query: 130 GDKKD 134
GD +D
Sbjct: 433 GDNED 437
>sp|A1JIP3|CH60_YERE8 60 kDa chaperonin OS=Yersinia enterocolitica serotype O:8 / biotype
1B (strain 8081) GN=groL PE=3 SV=1
Length = 550
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 10 DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69
D + +DG + + GRV I +E + S + ++ ++ + V +
Sbjct: 328 DTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVI-------- 379
Query: 70 HYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLP 129
K+G + K+ D L V+EG + GG+ L+ T GL
Sbjct: 380 -------KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAASAITAAGLK 432
Query: 130 GDKKD 134
GD +D
Sbjct: 433 GDNED 437
>sp|A5UU62|SYP_ROSS1 Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3
SV=1
Length = 480
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 188 ERPTLILQMEYLADILIK--AEPLSTGLATDVH---GQLT------------VLNKGTSH 230
ER TL++ E AD + K A P+ GL ++ G L L GTSH
Sbjct: 172 ERETLLILHEVYADFVEKEMAIPVIKGLKSEKEKFPGALRSYCIEAMMQDGRALQAGTSH 231
Query: 231 RLGRSGNKIHNFHYKVKENTVEYFYPGS 258
LG++ + + Y ++NT++Y + S
Sbjct: 232 NLGQNFARAFDITYTDQQNTIQYAWTTS 259
>sp|Q9WYX6|CH60_THEMA 60 kDa chaperonin OS=Thermotoga maritima (strain ATCC 43589 / MSB8
/ DSM 3109 / JCM 10099) GN=groL PE=3 SV=1
Length = 538
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 10 DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69
D + + G +P + R+ I+ +E + S + ++ ++ + V +
Sbjct: 326 DETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVI-------- 377
Query: 70 HYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEK--ILKTICG 127
K+G T+ K+ D L V+EG GG+ LL + + K I
Sbjct: 378 -------KVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEE 430
Query: 128 LPGDKKDYVTIMIDDIS--LVEVAANGGSD 155
L GD+K I+ +S + ++A N G D
Sbjct: 431 LEGDEKIGAQIVYKALSAPIKQIAENAGYD 460
>sp|B1L8Y8|CH60_THESQ 60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1
Length = 538
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 10 DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69
D + + G +P + R+ I+ +E + S + ++ ++ + V +
Sbjct: 326 DETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVI-------- 377
Query: 70 HYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEK--ILKTICG 127
K+G T+ K+ D L V+EG GG+ LL + + K I
Sbjct: 378 -------KVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEE 430
Query: 128 LPGDKKDYVTIMIDDIS--LVEVAANGGSD 155
L GD+K I+ +S + ++A N G D
Sbjct: 431 LEGDEKIGAQIVYKALSAPIKQIAENAGYD 460
>sp|A5IJR6|CH60_THEP1 60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=groL PE=3 SV=1
Length = 538
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 10 DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69
D + + G +P + R+ I+ +E + S + ++ ++ + V +
Sbjct: 326 DETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVI-------- 377
Query: 70 HYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEK--ILKTICG 127
K+G T+ K+ D L V+EG GG+ LL + + K I
Sbjct: 378 -------KVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEE 430
Query: 128 LPGDKKDYVTIMIDDIS--LVEVAANGGSD 155
L GD+K I+ +S + ++A N G D
Sbjct: 431 LEGDEKIGAQIVYKALSAPIKQIAENAGYD 460
>sp|Q8YAD4|GLMU_LISMO Bifunctional protein GlmU OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=glmU PE=3 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 2 ENQYLNLLDRALGLDGPSEPWP-LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNV 58
E+ Y+++ D +G D EP L G+ V+ +DCV TSGS +++ ++ + +S++
Sbjct: 259 ESTYIDI-DVKIGQDTVIEPGVMLRGKTVIGDDCVVTSGSEIVNSVIGERVHVRTSSI 315
>sp|B8DGM7|GLMU_LISMH Bifunctional protein GlmU OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=glmU PE=3 SV=1
Length = 457
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 2 ENQYLNLLDRALGLDGPSEPWP-LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNV 58
E+ Y+++ D +G D EP L G+ V+ +DCV TSGS +++ ++ + +S++
Sbjct: 259 ESTYIDI-DVKIGQDTVIEPGVMLRGKTVIGDDCVVTSGSEIVNSVIGERVHVRTSSI 315
>sp|Q6D9J0|CH60_ERWCT 60 kDa chaperonin OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=groL PE=3 SV=1
Length = 549
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 10 DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69
D + +DG + + GRV I +E + S + ++ ++ + V +
Sbjct: 328 DTTIIIDGVGDEVAIQGRVTQIRQQIEDATSDYDKEKLQERVAKLAGGVAVI-------- 379
Query: 70 HYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLP 129
K+G + K+ D L V+EG + GG+ L+ ++ GL
Sbjct: 380 -------KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAASISVSGLK 432
Query: 130 GDKKD 134
GD +D
Sbjct: 433 GDNED 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,307,928
Number of Sequences: 539616
Number of extensions: 4122776
Number of successful extensions: 9108
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9079
Number of HSP's gapped (non-prelim): 32
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)