Query 024921
Match_columns 260
No_of_seqs 114 out of 226
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09807 DUF2348: Uncharacteri 100.0 3.2E-54 6.9E-59 379.6 25.2 231 8-248 4-249 (249)
2 KOG4723 Uncharacterized conser 100.0 2.4E-36 5.2E-41 251.2 14.4 202 19-222 12-231 (248)
3 PF06745 KaiC: KaiC; InterPro 99.5 5.3E-13 1.1E-17 115.6 16.4 215 8-256 7-225 (226)
4 TIGR03877 thermo_KaiC_1 KaiC d 99.4 1.2E-10 2.7E-15 101.9 22.0 213 24-257 19-235 (237)
5 PRK06067 flagellar accessory p 99.4 1.9E-10 4.2E-15 100.2 22.2 216 8-256 13-229 (234)
6 PRK04328 hypothetical protein; 99.4 1.6E-10 3.4E-15 102.1 20.6 223 8-257 11-237 (249)
7 TIGR03880 KaiC_arch_3 KaiC dom 99.2 2.1E-09 4.6E-14 93.0 19.8 218 8-257 4-221 (224)
8 COG0467 RAD55 RecA-superfamily 99.2 7.9E-09 1.7E-13 91.6 21.7 225 9-258 12-237 (260)
9 PRK09302 circadian clock prote 99.1 9.6E-09 2.1E-13 99.5 21.1 221 8-258 19-243 (509)
10 TIGR03881 KaiC_arch_4 KaiC dom 99.1 3.9E-08 8.3E-13 85.2 21.5 210 24-254 18-228 (229)
11 PRK09302 circadian clock prote 99.1 1.4E-08 3E-13 98.4 20.3 204 24-257 271-475 (509)
12 PF10483 Elong_Iki1: Elongator 99.1 1.1E-08 2.3E-13 92.1 17.3 177 8-229 1-200 (280)
13 COG2874 FlaH Predicted ATPases 99.0 8.1E-08 1.8E-12 82.2 18.3 203 24-253 26-229 (235)
14 TIGR02655 circ_KaiC circadian 99.0 1.1E-07 2.5E-12 91.6 20.6 211 24-258 19-233 (484)
15 TIGR02655 circ_KaiC circadian 98.8 2.9E-07 6.2E-12 88.8 19.2 203 24-256 261-464 (484)
16 PRK08533 flagellar accessory p 98.7 3.4E-06 7.3E-11 73.7 19.7 203 24-254 22-225 (230)
17 TIGR03878 thermo_KaiC_2 KaiC d 98.6 7.1E-06 1.5E-10 72.9 19.0 205 23-253 33-254 (259)
18 cd01123 Rad51_DMC1_radA Rad51_ 98.6 1.2E-05 2.5E-10 69.7 18.9 208 8-252 7-235 (235)
19 TIGR02237 recomb_radB DNA repa 98.5 2E-05 4.3E-10 67.2 18.4 192 24-252 10-209 (209)
20 PRK04301 radA DNA repair and r 98.5 3.8E-05 8.3E-10 70.1 21.2 209 7-252 89-315 (317)
21 cd01124 KaiC KaiC is a circadi 98.5 4.2E-06 9.1E-11 69.7 13.5 163 29-210 2-166 (187)
22 PRK09361 radB DNA repair and r 98.5 3.7E-05 8E-10 66.4 19.2 203 8-253 11-223 (225)
23 TIGR00416 sms DNA repair prote 98.4 3.7E-05 8.1E-10 73.7 19.1 186 24-255 92-282 (454)
24 PRK11823 DNA repair protein Ra 98.4 4.8E-05 1E-09 72.8 19.1 193 8-252 68-264 (446)
25 cd01121 Sms Sms (bacterial rad 98.4 0.00011 2.4E-09 68.6 20.9 194 8-253 70-267 (372)
26 TIGR02238 recomb_DMC1 meiotic 98.3 7.8E-05 1.7E-09 68.1 19.3 207 8-252 84-311 (313)
27 cd01393 recA_like RecA is a b 98.3 4.2E-05 9.2E-10 65.8 15.5 194 7-227 6-217 (226)
28 cd01394 radB RadB. The archaea 98.3 9.9E-05 2.1E-09 63.3 17.7 201 8-251 7-217 (218)
29 TIGR02236 recomb_radA DNA repa 98.3 0.00017 3.7E-09 65.5 19.8 210 7-252 82-309 (310)
30 PLN03187 meiotic recombination 98.2 0.00019 4E-09 66.4 18.3 207 8-252 114-340 (344)
31 cd01122 GP4d_helicase GP4d_hel 98.1 0.00015 3.3E-09 64.2 15.5 169 24-211 28-231 (271)
32 PRK09354 recA recombinase A; P 98.1 0.0001 2.2E-09 68.2 13.8 177 7-220 46-241 (349)
33 PLN03186 DNA repair protein RA 98.0 0.0011 2.3E-08 61.5 20.0 207 8-252 111-338 (342)
34 PTZ00035 Rad51 protein; Provis 98.0 0.0016 3.5E-08 60.2 20.2 207 8-252 106-333 (337)
35 cd00983 recA RecA is a bacter 98.0 0.00016 3.4E-09 66.4 13.3 177 7-220 41-236 (325)
36 PRK09519 recA DNA recombinatio 98.0 0.00028 6.1E-09 71.4 16.1 181 8-225 47-246 (790)
37 TIGR02239 recomb_RAD51 DNA rep 97.9 0.0036 7.8E-08 57.3 21.4 207 8-252 84-312 (316)
38 PF05625 PAXNEB: PAXNEB protei 97.9 4.9E-05 1.1E-09 70.8 9.2 137 112-250 177-325 (363)
39 TIGR02012 tigrfam_recA protein 97.9 0.00018 3.9E-09 65.9 11.4 177 7-220 41-236 (321)
40 PRK05973 replicative DNA helic 97.8 0.0006 1.3E-08 59.9 13.4 132 24-182 62-193 (237)
41 cd00984 DnaB_C DnaB helicase C 97.8 0.00089 1.9E-08 58.2 14.5 179 24-210 11-209 (242)
42 PF13481 AAA_25: AAA domain; P 97.8 0.00016 3.5E-09 60.5 8.7 148 23-182 29-189 (193)
43 PF08423 Rad51: Rad51; InterP 97.7 0.016 3.5E-07 51.4 20.7 208 7-252 25-253 (256)
44 PF00154 RecA: recA bacterial 97.3 0.0059 1.3E-07 56.0 13.1 180 7-223 39-237 (322)
45 cd01120 RecA-like_NTPases RecA 97.1 0.04 8.7E-07 43.7 15.0 157 29-207 2-164 (165)
46 COG1066 Sms Predicted ATP-depe 97.1 0.046 1E-06 51.5 16.5 158 25-225 92-253 (456)
47 cd01125 repA Hexameric Replica 96.8 0.058 1.2E-06 47.0 14.1 181 26-214 1-196 (239)
48 TIGR00665 DnaB replicative DNA 96.5 0.14 3.1E-06 48.6 15.8 178 24-209 193-390 (434)
49 TIGR03600 phage_DnaB phage rep 96.0 0.16 3.5E-06 48.1 13.3 179 24-209 192-389 (421)
50 PHA02542 41 41 helicase; Provi 95.8 0.42 9.1E-06 46.2 15.4 177 24-208 188-386 (473)
51 PF05763 DUF835: Protein of un 95.4 0.065 1.4E-06 43.1 6.9 69 111-186 57-125 (136)
52 PF05621 TniB: Bacterial TniB 95.1 0.72 1.6E-05 42.0 13.5 138 2-178 42-186 (302)
53 KOG4723 Uncharacterized conser 94.9 0.0044 9.6E-08 52.8 -1.2 118 134-258 129-246 (248)
54 KOG3949 RNA polymerase II elon 94.9 0.098 2.1E-06 48.0 7.3 92 157-251 231-328 (360)
55 COG3598 RepA RecA-family ATPas 94.9 0.6 1.3E-05 43.0 12.2 140 25-182 88-242 (402)
56 PRK09165 replicative DNA helic 94.8 0.6 1.3E-05 45.4 12.9 178 24-207 215-426 (497)
57 PF13401 AAA_22: AAA domain; P 94.7 0.28 6.1E-06 37.8 8.7 117 25-181 3-125 (131)
58 COG0468 RecA RecA/RadA recombi 94.7 2.5 5.3E-05 38.2 15.6 203 7-249 47-262 (279)
59 PF03796 DnaB_C: DnaB-like hel 94.6 0.82 1.8E-05 40.2 12.3 207 7-227 7-236 (259)
60 PRK08506 replicative DNA helic 94.3 1.1 2.4E-05 43.3 13.6 178 24-208 190-386 (472)
61 PRK05748 replicative DNA helic 93.5 0.48 1E-05 45.4 9.3 177 24-208 201-399 (448)
62 PRK05595 replicative DNA helic 93.3 2 4.4E-05 41.0 13.3 177 24-208 199-395 (444)
63 PRK08760 replicative DNA helic 92.8 3.7 8E-05 39.8 14.3 175 24-207 227-422 (476)
64 PRK06321 replicative DNA helic 91.9 3.6 7.7E-05 39.9 12.8 176 24-208 224-423 (472)
65 PRK04296 thymidine kinase; Pro 90.9 2.8 6.1E-05 35.2 9.9 154 26-226 2-159 (190)
66 KOG0744 AAA+-type ATPase [Post 90.6 1.7 3.7E-05 40.2 8.6 125 69-208 192-326 (423)
67 PRK06904 replicative DNA helic 89.8 11 0.00023 36.6 14.0 178 24-208 219-418 (472)
68 PF03192 DUF257: Pyrococcus pr 89.4 4.4 9.5E-05 35.0 9.9 187 25-229 10-201 (210)
69 PRK05636 replicative DNA helic 89.3 11 0.00023 37.0 13.6 176 24-208 263-459 (505)
70 PRK07773 replicative DNA helic 89.0 1.4 2.9E-05 46.1 7.7 153 23-182 214-377 (886)
71 PF14417 MEDS: MEDS: MEthanoge 88.7 11 0.00024 31.5 11.9 70 26-98 20-90 (191)
72 PF07088 GvpD: GvpD gas vesicl 87.5 27 0.00059 33.4 16.4 199 24-256 8-215 (484)
73 PRK08840 replicative DNA helic 86.8 19 0.00042 34.8 13.6 177 24-208 215-413 (464)
74 PRK07004 replicative DNA helic 85.0 23 0.00049 34.2 13.1 178 24-208 211-408 (460)
75 PRK08006 replicative DNA helic 83.8 40 0.00086 32.7 14.2 178 24-208 222-420 (471)
76 PRK06749 replicative DNA helic 81.4 51 0.0011 31.5 14.7 180 24-208 184-384 (428)
77 PF14516 AAA_35: AAA-like doma 79.3 19 0.00041 33.0 9.9 120 25-166 30-158 (331)
78 PF05729 NACHT: NACHT domain 78.5 30 0.00065 27.1 9.8 29 27-55 1-29 (166)
79 COG1120 FepC ABC-type cobalami 77.3 32 0.0007 30.7 10.3 163 23-208 25-214 (258)
80 PF00931 NB-ARC: NB-ARC domain 76.2 46 0.00099 29.0 11.2 93 25-147 18-114 (287)
81 KOG2373 Predicted mitochondria 71.6 24 0.00051 33.3 8.1 177 24-216 271-466 (514)
82 PF01637 Arch_ATPase: Archaeal 67.4 47 0.001 27.5 8.9 41 26-68 20-60 (234)
83 PF07693 KAP_NTPase: KAP famil 64.1 25 0.00055 31.4 6.9 40 25-65 19-58 (325)
84 COG3845 ABC-type uncharacteriz 60.1 34 0.00074 33.3 7.1 90 59-180 109-198 (501)
85 PRK00411 cdc6 cell division co 59.2 1.5E+02 0.0032 27.3 14.5 92 28-147 57-151 (394)
86 cd03227 ABC_Class2 ABC-type Cl 56.1 30 0.00065 27.9 5.4 43 134-182 99-141 (162)
87 PF02572 CobA_CobO_BtuR: ATP:c 53.2 76 0.0016 26.5 7.4 131 56-217 31-164 (172)
88 TIGR02324 CP_lyasePhnL phospho 52.7 29 0.00063 29.4 5.0 43 134-182 167-209 (224)
89 TIGR00708 cobA cob(I)alamin ad 52.1 1.4E+02 0.003 24.9 10.1 155 25-214 5-162 (173)
90 PF00308 Bac_DnaA: Bacterial d 49.6 1.3E+02 0.0028 25.7 8.6 38 28-65 36-73 (219)
91 PF13191 AAA_16: AAA ATPase do 48.0 1.4E+02 0.003 23.7 9.0 55 25-81 23-81 (185)
92 cd03267 ABC_NatA_like Similar 47.7 42 0.00092 28.8 5.3 44 134-182 171-214 (236)
93 cd03298 ABC_ThiQ_thiamine_tran 47.0 43 0.00093 28.0 5.1 44 134-182 146-189 (211)
94 cd00561 CobA_CobO_BtuR ATP:cor 47.0 1.6E+02 0.0035 24.1 11.0 150 26-210 3-156 (159)
95 cd03297 ABC_ModC_molybdenum_tr 46.5 43 0.00094 28.1 5.1 44 134-182 149-192 (214)
96 cd03261 ABC_Org_Solvent_Resist 46.4 43 0.00094 28.6 5.1 58 134-207 154-211 (235)
97 TIGR02928 orc1/cdc6 family rep 46.0 2.3E+02 0.005 25.7 10.5 92 27-147 41-142 (365)
98 cd03259 ABC_Carb_Solutes_like 45.6 47 0.001 27.8 5.2 44 134-182 148-191 (213)
99 PF00004 AAA: ATPase family as 45.5 69 0.0015 23.9 5.7 16 134-149 58-73 (132)
100 cd03301 ABC_MalK_N The N-termi 45.5 46 0.001 27.8 5.1 44 134-182 148-191 (213)
101 PRK10584 putative ABC transpor 45.4 49 0.0011 28.0 5.3 44 134-182 164-207 (228)
102 COG1131 CcmA ABC-type multidru 45.2 40 0.00087 30.3 4.9 144 24-181 29-196 (293)
103 PRK10771 thiQ thiamine transpo 44.5 50 0.0011 28.1 5.2 44 134-182 147-190 (232)
104 TIGR01184 ntrCD nitrate transp 44.4 49 0.0011 28.3 5.2 58 134-207 132-189 (230)
105 PHA00520 packaging NTPase P4 44.0 2E+02 0.0044 26.3 9.0 47 135-181 184-236 (330)
106 COG1136 SalX ABC-type antimicr 44.0 41 0.00088 29.4 4.5 57 134-207 160-216 (226)
107 cd03258 ABC_MetN_methionine_tr 43.9 49 0.0011 28.2 5.1 44 134-182 158-201 (233)
108 PRK10247 putative ABC transpor 43.7 52 0.0011 28.0 5.2 44 134-182 155-198 (225)
109 cd03278 ABC_SMC_barmotin Barmo 43.6 82 0.0018 26.4 6.3 62 135-215 136-197 (197)
110 cd03256 ABC_PhnC_transporter A 43.6 51 0.0011 28.1 5.2 58 134-207 162-219 (241)
111 TIGR02315 ABC_phnC phosphonate 43.4 51 0.0011 28.2 5.2 44 134-182 163-206 (243)
112 COG2248 Predicted hydrolase (m 43.1 1E+02 0.0022 27.7 6.9 101 60-180 147-247 (304)
113 PRK09984 phosphonate/organopho 43.1 50 0.0011 28.7 5.1 44 134-182 170-213 (262)
114 PRK13636 cbiO cobalt transport 43.1 53 0.0011 29.2 5.3 44 134-182 159-202 (283)
115 cd03255 ABC_MJ0796_Lo1CDE_FtsE 43.1 54 0.0012 27.5 5.2 44 134-182 158-201 (218)
116 TIGR01166 cbiO cobalt transpor 43.0 58 0.0013 26.7 5.3 43 134-182 145-187 (190)
117 COG0503 Apt Adenine/guanine ph 42.9 78 0.0017 26.4 6.0 87 59-164 56-142 (179)
118 PF07894 DUF1669: Protein of u 42.9 61 0.0013 29.4 5.6 53 29-85 151-203 (284)
119 TIGR03864 PQQ_ABC_ATP ABC tran 42.7 55 0.0012 28.0 5.2 44 134-182 150-193 (236)
120 cd03216 ABC_Carb_Monos_I This 42.2 65 0.0014 25.9 5.3 43 134-182 100-142 (163)
121 cd03225 ABC_cobalt_CbiO_domain 42.0 58 0.0013 27.2 5.2 43 134-182 152-194 (211)
122 PRK13650 cbiO cobalt transport 41.9 56 0.0012 28.9 5.3 44 134-182 158-201 (279)
123 cd03229 ABC_Class3 This class 41.8 64 0.0014 26.3 5.3 44 134-182 118-161 (178)
124 PF13479 AAA_24: AAA domain 41.8 1.4E+02 0.003 25.3 7.5 71 134-207 68-173 (213)
125 cd03265 ABC_DrrA DrrA is the A 41.3 60 0.0013 27.4 5.2 44 134-182 149-192 (220)
126 PHA00527 hypothetical protein 41.3 23 0.0005 27.2 2.2 23 62-84 22-44 (129)
127 PRK13648 cbiO cobalt transport 41.2 59 0.0013 28.5 5.3 44 134-182 160-203 (269)
128 TIGR03608 L_ocin_972_ABC putat 41.1 65 0.0014 26.7 5.3 43 134-182 152-194 (206)
129 cd00009 AAA The AAA+ (ATPases 41.1 1.4E+02 0.0031 21.9 11.7 40 25-66 18-57 (151)
130 TIGR02211 LolD_lipo_ex lipopro 40.9 63 0.0014 27.2 5.2 44 134-182 159-202 (221)
131 PRK13635 cbiO cobalt transport 40.6 63 0.0014 28.6 5.4 44 134-182 158-201 (279)
132 COG1121 ZnuC ABC-type Mn/Zn tr 40.5 82 0.0018 28.0 6.0 43 134-182 157-199 (254)
133 TIGR03015 pepcterm_ATPase puta 40.1 98 0.0021 26.7 6.5 53 25-81 42-98 (269)
134 PRK10575 iron-hydroxamate tran 39.9 61 0.0013 28.3 5.2 44 134-182 165-208 (265)
135 PRK13634 cbiO cobalt transport 39.8 62 0.0013 28.9 5.3 44 134-182 163-206 (290)
136 cd03257 ABC_NikE_OppD_transpor 39.7 63 0.0014 27.2 5.1 44 134-182 163-206 (228)
137 cd03237 ABC_RNaseL_inhibitor_d 39.6 65 0.0014 28.1 5.2 59 134-208 133-191 (246)
138 PRK11831 putative ABC transpor 39.5 62 0.0014 28.4 5.2 43 134-181 161-203 (269)
139 cd03230 ABC_DR_subfamily_A Thi 39.4 68 0.0015 26.0 5.1 43 134-182 113-155 (173)
140 TIGR02770 nickel_nikD nickel i 39.4 62 0.0013 27.6 5.0 44 134-182 143-186 (230)
141 PRK13652 cbiO cobalt transport 39.3 66 0.0014 28.4 5.3 44 134-182 155-198 (277)
142 TIGR03005 ectoine_ehuA ectoine 39.3 66 0.0014 27.8 5.2 44 134-182 164-207 (252)
143 PRK13633 cobalt transporter AT 39.2 65 0.0014 28.5 5.3 44 134-182 162-205 (280)
144 cd03293 ABC_NrtD_SsuB_transpor 39.0 66 0.0014 27.1 5.1 44 134-182 149-192 (220)
145 PRK09544 znuC high-affinity zi 38.9 69 0.0015 27.9 5.3 43 134-181 138-180 (251)
146 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 38.8 71 0.0015 27.2 5.3 43 134-182 160-202 (224)
147 cd03296 ABC_CysA_sulfate_impor 38.8 67 0.0014 27.5 5.1 58 134-207 154-211 (239)
148 cd03294 ABC_Pro_Gly_Bertaine T 38.5 66 0.0014 28.3 5.2 58 134-207 178-235 (269)
149 PF15609 PRTase_2: Phosphoribo 38.4 86 0.0019 26.7 5.5 57 25-83 121-182 (191)
150 PRK11629 lolD lipoprotein tran 38.4 70 0.0015 27.2 5.2 44 134-182 163-206 (233)
151 cd03295 ABC_OpuCA_Osmoprotecti 38.3 66 0.0014 27.6 5.1 44 134-182 153-196 (242)
152 PRK11248 tauB taurine transpor 38.1 69 0.0015 27.9 5.2 58 134-207 146-203 (255)
153 cd03235 ABC_Metallic_Cations A 38.0 73 0.0016 26.6 5.2 43 134-182 150-192 (213)
154 PRK13642 cbiO cobalt transport 38.0 69 0.0015 28.3 5.2 44 134-182 158-201 (277)
155 TIGR02982 heterocyst_DevA ABC 38.0 72 0.0016 26.9 5.2 44 134-182 159-202 (220)
156 cd03214 ABC_Iron-Siderophores_ 37.9 77 0.0017 25.9 5.2 44 134-182 115-158 (180)
157 cd03269 ABC_putative_ATPase Th 37.8 67 0.0015 26.8 4.9 43 134-182 146-188 (210)
158 cd03231 ABC_CcmA_heme_exporter 37.3 83 0.0018 26.2 5.4 44 134-183 143-186 (201)
159 cd03238 ABC_UvrA The excision 37.2 88 0.0019 25.9 5.4 56 135-208 108-163 (176)
160 TIGR00960 3a0501s02 Type II (G 37.2 78 0.0017 26.5 5.2 43 134-182 156-198 (216)
161 cd03233 ABC_PDR_domain1 The pl 37.2 1.4E+02 0.0031 24.8 6.8 43 134-181 136-178 (202)
162 PRK13640 cbiO cobalt transport 37.0 75 0.0016 28.2 5.3 44 134-182 161-204 (282)
163 cd03299 ABC_ModC_like Archeal 36.8 75 0.0016 27.2 5.2 58 134-207 147-204 (235)
164 TIGR01277 thiQ thiamine ABC tr 36.6 76 0.0016 26.6 5.1 44 134-182 146-189 (213)
165 PRK11614 livF leucine/isoleuci 36.4 76 0.0016 27.1 5.1 42 134-181 155-196 (237)
166 PRK14250 phosphate ABC transpo 36.3 82 0.0018 27.1 5.3 58 134-207 149-206 (241)
167 TIGR00968 3a0106s01 sulfate AB 36.0 79 0.0017 27.1 5.2 44 134-182 148-191 (237)
168 PRK10418 nikD nickel transport 36.0 78 0.0017 27.4 5.2 44 134-182 158-201 (254)
169 PRK05986 cob(I)alamin adenolsy 35.9 2.7E+02 0.0059 23.6 10.3 156 25-215 22-181 (191)
170 cd03224 ABC_TM1139_LivF_branch 35.9 83 0.0018 26.4 5.2 43 134-182 150-192 (222)
171 PRK10908 cell division protein 35.5 85 0.0018 26.5 5.2 43 134-182 155-197 (222)
172 cd03266 ABC_NatA_sodium_export 35.4 83 0.0018 26.3 5.1 43 134-182 154-196 (218)
173 PRK13645 cbiO cobalt transport 35.4 79 0.0017 28.0 5.2 44 134-182 168-211 (289)
174 PRK11247 ssuB aliphatic sulfon 35.4 80 0.0017 27.7 5.1 44 134-182 151-194 (257)
175 PRK15112 antimicrobial peptide 35.2 75 0.0016 27.9 5.0 44 134-182 167-210 (267)
176 COG1117 PstB ABC-type phosphat 35.1 61 0.0013 28.6 4.1 42 134-182 167-208 (253)
177 PRK05800 cobU adenosylcobinami 34.9 2.1E+02 0.0046 23.4 7.4 68 135-206 77-161 (170)
178 cd03226 ABC_cobalt_CbiO_domain 34.6 91 0.002 25.9 5.2 43 134-182 144-186 (205)
179 PRK11300 livG leucine/isoleuci 34.4 90 0.0019 26.9 5.3 44 134-182 171-214 (255)
180 cd03219 ABC_Mj1267_LivG_branch 34.4 90 0.0019 26.5 5.2 57 134-207 161-217 (236)
181 cd03268 ABC_BcrA_bacitracin_re 34.3 86 0.0019 26.1 5.0 43 134-182 144-186 (208)
182 cd03262 ABC_HisP_GlnQ_permease 34.1 97 0.0021 25.8 5.3 43 134-182 153-195 (213)
183 KOG2543 Origin recognition com 34.0 4.3E+02 0.0093 25.3 10.6 132 9-178 18-155 (438)
184 TIGR03410 urea_trans_UrtE urea 34.0 92 0.002 26.4 5.2 44 134-182 149-192 (230)
185 PRK13548 hmuV hemin importer A 34.0 94 0.002 27.1 5.4 43 134-181 158-200 (258)
186 PRK13647 cbiO cobalt transport 33.8 91 0.002 27.5 5.3 43 134-182 156-198 (274)
187 cd03232 ABC_PDR_domain2 The pl 33.7 1.1E+02 0.0023 25.3 5.5 42 134-181 126-167 (192)
188 PRK15045 cellulose biosynthesi 33.4 3.2E+02 0.007 26.9 9.1 129 25-183 21-149 (519)
189 PRK13637 cbiO cobalt transport 33.3 94 0.002 27.6 5.4 43 134-181 162-204 (287)
190 cd03246 ABCC_Protease_Secretio 33.2 1.1E+02 0.0023 24.8 5.3 26 24-49 26-51 (173)
191 PRK14087 dnaA chromosomal repl 33.2 2.3E+02 0.0051 27.2 8.3 12 135-146 207-218 (450)
192 PRK10419 nikE nickel transport 32.9 90 0.002 27.4 5.1 44 134-182 169-212 (268)
193 cd03300 ABC_PotA_N PotA is an 32.8 96 0.0021 26.4 5.2 44 134-182 148-191 (232)
194 PF13304 AAA_21: AAA domain; P 32.7 2E+02 0.0043 23.4 7.0 62 111-182 238-299 (303)
195 PRK14258 phosphate ABC transpo 32.7 98 0.0021 27.0 5.3 58 134-207 168-225 (261)
196 cd03245 ABCC_bacteriocin_expor 32.7 92 0.002 26.1 5.0 42 134-182 158-199 (220)
197 PRK10253 iron-enterobactin tra 32.6 99 0.0021 27.0 5.3 44 134-182 161-204 (265)
198 PRK13547 hmuV hemin importer A 32.5 99 0.0021 27.4 5.3 44 134-182 172-215 (272)
199 TIGR02323 CP_lyasePhnK phospho 32.5 95 0.0021 26.8 5.1 44 134-182 166-209 (253)
200 KOG2859 DNA repair protein, me 32.3 3.6E+02 0.0078 23.9 11.5 108 25-149 37-169 (293)
201 PRK13539 cytochrome c biogenes 32.1 1.1E+02 0.0023 25.6 5.3 43 134-182 145-187 (207)
202 PRK14722 flhF flagellar biosyn 31.9 2E+02 0.0044 27.1 7.4 66 21-86 132-201 (374)
203 PRK13540 cytochrome c biogenes 31.8 1.1E+02 0.0023 25.4 5.2 44 134-183 145-188 (200)
204 PRK13632 cbiO cobalt transport 31.7 1.1E+02 0.0023 26.9 5.4 44 134-182 160-203 (271)
205 PRK13646 cbiO cobalt transport 31.5 1E+02 0.0022 27.4 5.3 44 134-182 163-206 (286)
206 PRK11701 phnK phosphonate C-P 31.5 96 0.0021 26.9 5.0 44 134-182 169-212 (258)
207 PRK13538 cytochrome c biogenes 31.4 1.1E+02 0.0025 25.3 5.3 43 134-182 147-189 (204)
208 TIGR02769 nickel_nikE nickel i 31.3 1E+02 0.0023 26.9 5.2 44 134-182 168-211 (265)
209 PRK09580 sufC cysteine desulfu 31.3 1.1E+02 0.0023 26.3 5.2 43 134-182 163-205 (248)
210 cd03222 ABC_RNaseL_inhibitor T 31.2 1.2E+02 0.0027 25.0 5.4 44 134-182 89-132 (177)
211 PF02283 CobU: Cobinamide kina 31.0 2.1E+02 0.0045 23.5 6.6 121 57-206 24-159 (167)
212 PRK13639 cbiO cobalt transport 31.0 1.1E+02 0.0024 27.0 5.3 43 134-182 155-197 (275)
213 cd03292 ABC_FtsE_transporter F 31.0 1.1E+02 0.0024 25.4 5.2 43 134-182 154-196 (214)
214 PRK09493 glnQ glutamine ABC tr 30.8 1.1E+02 0.0024 26.1 5.2 43 134-182 154-196 (240)
215 cd03260 ABC_PstB_phosphate_tra 30.7 1.1E+02 0.0023 25.9 5.1 42 134-182 159-200 (227)
216 TIGR02673 FtsE cell division A 30.5 1.2E+02 0.0025 25.4 5.2 42 134-181 155-196 (214)
217 TIGR03771 anch_rpt_ABC anchore 30.3 1.1E+02 0.0025 25.9 5.2 43 134-182 131-173 (223)
218 PRK13543 cytochrome c biogenes 30.2 1.2E+02 0.0026 25.5 5.3 43 134-182 155-197 (214)
219 cd03270 ABC_UvrA_I The excisio 30.1 1.2E+02 0.0026 25.9 5.3 55 136-208 159-213 (226)
220 cd03240 ABC_Rad50 The catalyti 30.1 1.2E+02 0.0027 25.4 5.3 43 134-181 139-182 (204)
221 cd00267 ABC_ATPase ABC (ATP-bi 30.1 1.3E+02 0.0028 23.8 5.2 43 134-182 98-140 (157)
222 TIGR01618 phage_P_loop phage n 30.0 3.7E+02 0.0079 23.3 8.8 73 134-207 81-181 (220)
223 PRK15056 manganese/iron transp 30.0 1.1E+02 0.0024 26.9 5.1 43 134-182 160-202 (272)
224 PRK12724 flagellar biosynthesi 30.0 5.1E+02 0.011 25.0 10.0 78 5-84 200-284 (432)
225 TIGR01188 drrA daunorubicin re 29.9 1.1E+02 0.0023 27.5 5.1 42 134-181 142-183 (302)
226 PRK13638 cbiO cobalt transport 29.6 1.1E+02 0.0025 26.7 5.2 43 134-182 154-196 (271)
227 cd03215 ABC_Carb_Monos_II This 29.4 1.2E+02 0.0027 24.7 5.1 43 134-182 122-164 (182)
228 PRK11231 fecE iron-dicitrate t 29.3 1.2E+02 0.0025 26.3 5.1 43 134-182 156-198 (255)
229 TIGR03499 FlhF flagellar biosy 29.3 1.9E+02 0.0041 25.8 6.6 61 5-65 173-233 (282)
230 cd03213 ABCG_EPDR ABCG transpo 29.2 1.3E+02 0.0029 24.8 5.3 43 134-182 129-171 (194)
231 PF02463 SMC_N: RecF/RecN/SMC 29.1 1.7E+02 0.0036 24.5 6.0 62 134-214 158-219 (220)
232 COG1474 CDC6 Cdc6-related prot 29.0 4.8E+02 0.01 24.3 10.9 90 29-148 45-137 (366)
233 PRK11264 putative amino-acid A 28.9 1.2E+02 0.0027 25.9 5.3 57 134-207 162-218 (250)
234 TIGR03269 met_CoM_red_A2 methy 28.7 1E+02 0.0023 29.8 5.2 43 134-181 186-228 (520)
235 PRK13649 cbiO cobalt transport 28.6 1.2E+02 0.0026 26.7 5.2 42 134-181 163-204 (280)
236 PF06565 DUF1126: Repeat of un 28.6 31 0.00068 20.6 1.0 16 242-257 2-17 (33)
237 TIGR03740 galliderm_ABC gallid 28.4 1.2E+02 0.0027 25.5 5.1 43 134-182 142-184 (223)
238 cd03264 ABC_drug_resistance_li 28.3 1.2E+02 0.0026 25.3 4.9 42 134-182 148-189 (211)
239 TIGR01978 sufC FeS assembly AT 28.3 1.3E+02 0.0029 25.5 5.3 43 134-182 162-204 (243)
240 PRK07413 hypothetical protein; 28.3 3.5E+02 0.0076 25.6 8.3 173 25-228 19-210 (382)
241 PRK10619 histidine/lysine/argi 28.2 1.3E+02 0.0028 26.1 5.2 43 134-182 170-212 (257)
242 cd03218 ABC_YhbG The ABC trans 28.1 1.3E+02 0.0028 25.5 5.1 57 134-207 151-207 (232)
243 cd03217 ABC_FeS_Assembly ABC-t 28.0 1.4E+02 0.0031 24.8 5.3 26 24-49 24-49 (200)
244 PRK15093 antimicrobial peptide 28.0 1.2E+02 0.0026 27.6 5.2 43 134-181 176-218 (330)
245 PRK08727 hypothetical protein; 27.9 1.7E+02 0.0037 25.2 5.9 86 113-210 76-163 (233)
246 cd03234 ABCG_White The White s 27.8 1.3E+02 0.0029 25.3 5.2 43 134-182 161-203 (226)
247 PRK11153 metN DL-methionine tr 27.8 1.2E+02 0.0027 27.7 5.3 43 134-181 158-200 (343)
248 CHL00131 ycf16 sulfate ABC tra 27.7 1.3E+02 0.0029 25.7 5.3 43 134-182 169-211 (252)
249 cd03275 ABC_SMC1_euk Eukaryoti 27.3 1.4E+02 0.003 25.8 5.3 41 135-181 178-218 (247)
250 cd03279 ABC_sbcCD SbcCD and ot 27.2 1.5E+02 0.0033 24.9 5.4 43 134-182 151-193 (213)
251 PRK10938 putative molybdenum t 27.1 1.2E+02 0.0026 29.1 5.2 44 134-182 419-462 (490)
252 TIGR03269 met_CoM_red_A2 methy 27.0 1.2E+02 0.0026 29.4 5.2 58 134-207 445-502 (520)
253 cd03252 ABCC_Hemolysin The ABC 26.4 1.4E+02 0.003 25.3 5.1 42 134-182 156-197 (237)
254 cd03248 ABCC_TAP TAP, the Tran 26.3 1.5E+02 0.0032 25.0 5.2 42 134-182 168-209 (226)
255 cd03271 ABC_UvrA_II The excisi 25.9 1.6E+02 0.0035 26.1 5.5 56 135-208 191-246 (261)
256 cd03247 ABCC_cytochrome_bd The 25.9 1.6E+02 0.0035 23.8 5.2 25 24-48 26-50 (178)
257 PRK11308 dppF dipeptide transp 25.9 1.4E+02 0.003 27.3 5.2 25 24-48 39-63 (327)
258 PRK14269 phosphate ABC transpo 25.5 1.5E+02 0.0034 25.4 5.2 42 134-182 160-201 (246)
259 PRK13644 cbiO cobalt transport 25.5 1.6E+02 0.0034 26.0 5.4 43 134-182 154-196 (274)
260 TIGR03873 F420-0_ABC_ATP propo 25.0 1.5E+02 0.0033 25.6 5.1 43 134-182 155-197 (256)
261 TIGR01288 nodI ATP-binding ABC 25.0 1.4E+02 0.0031 26.7 5.0 42 134-181 153-194 (303)
262 PRK11022 dppD dipeptide transp 24.9 1.5E+02 0.0032 27.1 5.2 43 134-181 171-213 (326)
263 TIGR01189 ccmA heme ABC export 24.8 1.9E+02 0.004 23.9 5.5 44 134-183 145-188 (198)
264 PRK15134 microcin C ABC transp 24.8 1.3E+02 0.0029 29.2 5.1 58 134-207 443-500 (529)
265 PRK13536 nodulation factor exp 24.7 1.5E+02 0.0031 27.4 5.1 42 134-181 190-231 (340)
266 PRK14272 phosphate ABC transpo 24.6 1.6E+02 0.0036 25.2 5.2 42 134-182 166-207 (252)
267 cd03228 ABCC_MRP_Like The MRP 24.5 1.8E+02 0.0039 23.4 5.2 42 134-182 114-155 (171)
268 PRK13643 cbiO cobalt transport 24.5 1.6E+02 0.0035 26.1 5.3 42 134-181 162-203 (288)
269 TIGR03411 urea_trans_UrtD urea 24.4 1.7E+02 0.0037 24.9 5.3 56 134-207 161-216 (242)
270 KOG1564 DNA repair protein RHP 24.4 2.9E+02 0.0063 25.4 6.7 68 113-181 187-262 (351)
271 PRK03695 vitamin B12-transport 24.3 1.6E+02 0.0035 25.4 5.1 43 134-182 151-193 (248)
272 PRK06460 hypothetical protein; 24.2 3.9E+02 0.0086 24.7 8.0 45 37-83 67-113 (376)
273 PRK13641 cbiO cobalt transport 24.2 1.6E+02 0.0035 26.1 5.2 42 134-181 163-204 (287)
274 PRK13651 cobalt transporter AT 24.1 1.7E+02 0.0037 26.4 5.4 43 134-182 183-225 (305)
275 PLN00020 ribulose bisphosphate 24.1 83 0.0018 29.9 3.3 99 35-149 121-227 (413)
276 KOG0735 AAA+-type ATPase [Post 24.1 7.3E+02 0.016 26.0 10.0 75 134-211 494-575 (952)
277 cd00544 CobU Adenosylcobinamid 24.0 4E+02 0.0087 21.8 14.1 37 28-69 1-37 (169)
278 TIGR00972 3a0107s01c2 phosphat 23.9 1.7E+02 0.0036 25.1 5.1 42 134-182 162-203 (247)
279 PRK13631 cbiO cobalt transport 23.8 1.7E+02 0.0036 26.6 5.3 43 134-182 194-236 (320)
280 cd03253 ABCC_ATM1_transporter 23.7 1.6E+02 0.0036 24.9 5.0 42 134-182 155-196 (236)
281 cd03254 ABCC_Glucan_exporter_l 23.5 1.8E+02 0.0038 24.5 5.1 42 134-182 157-198 (229)
282 PRK13537 nodulation ABC transp 23.4 1.6E+02 0.0035 26.5 5.1 42 134-181 156-197 (306)
283 TIGR01743 purR_Bsub pur operon 23.2 5.5E+02 0.012 23.0 8.6 138 4-163 80-219 (268)
284 COG3220 Uncharacterized protei 23.1 4.3E+02 0.0093 23.8 7.4 125 79-228 93-222 (282)
285 cd03239 ABC_SMC_head The struc 23.0 2.2E+02 0.0047 23.4 5.4 42 134-181 116-157 (178)
286 PRK09536 btuD corrinoid ABC tr 22.9 1.8E+02 0.0038 27.6 5.4 42 134-181 157-198 (402)
287 PTZ00397 macrophage migration 22.7 1.5E+02 0.0033 22.4 4.2 59 87-152 54-112 (116)
288 cd03249 ABC_MTABC3_MDL1_MDL2 M 22.7 1.8E+02 0.0039 24.7 5.0 26 24-49 27-52 (238)
289 PRK10895 lipopolysaccharide AB 22.6 1.9E+02 0.0041 24.6 5.2 57 134-207 155-211 (241)
290 PRK09473 oppD oligopeptide tra 22.5 1.7E+02 0.0038 26.7 5.2 43 134-181 179-221 (330)
291 PRK14244 phosphate ABC transpo 22.5 1.9E+02 0.0042 24.8 5.3 42 134-182 167-208 (251)
292 PRK15134 microcin C ABC transp 22.5 1.5E+02 0.0032 28.8 5.0 43 134-181 174-216 (529)
293 COG1124 DppF ABC-type dipeptid 22.5 1.9E+02 0.0041 25.8 5.0 57 134-206 159-215 (252)
294 TIGR02142 modC_ABC molybdenum 22.3 1.7E+02 0.0037 26.9 5.1 43 134-181 149-191 (354)
295 PRK12727 flagellar biosynthesi 22.2 3.3E+02 0.0072 27.2 7.2 78 5-84 331-412 (559)
296 PRK13409 putative ATPase RIL; 22.2 1.7E+02 0.0037 29.2 5.4 44 134-182 471-514 (590)
297 PF13245 AAA_19: Part of AAA d 22.2 2E+02 0.0044 20.2 4.4 51 26-78 10-62 (76)
298 PRK15079 oligopeptide ABC tran 22.1 1.8E+02 0.0038 26.7 5.1 43 134-181 179-221 (331)
299 TIGR00678 holB DNA polymerase 22.0 2.3E+02 0.005 23.1 5.4 63 133-211 95-157 (188)
300 PRK14235 phosphate transporter 21.9 2E+02 0.0044 25.1 5.3 41 134-181 181-221 (267)
301 KOG1434 Meiotic recombination 21.9 4.8E+02 0.01 23.7 7.4 106 133-252 210-331 (335)
302 cd03369 ABCC_NFT1 Domain 2 of 21.7 2E+02 0.0044 23.8 5.1 26 24-49 32-57 (207)
303 KOG2355 Predicted ABC-type tra 21.7 1E+02 0.0022 27.2 3.1 60 136-205 167-227 (291)
304 PRK09112 DNA polymerase III su 21.7 2.3E+02 0.005 26.3 5.8 66 133-214 140-205 (351)
305 PRK14249 phosphate ABC transpo 21.6 2.1E+02 0.0045 24.6 5.3 42 134-182 165-206 (251)
306 PRK14245 phosphate ABC transpo 21.5 2.1E+02 0.0045 24.6 5.2 56 134-207 164-219 (250)
307 cd03236 ABC_RNaseL_inhibitor_d 21.4 2.1E+02 0.0046 25.0 5.3 57 134-207 157-213 (255)
308 KOG0061 Transporter, ABC super 21.4 1.6E+02 0.0035 29.5 5.1 42 134-181 188-229 (613)
309 PF10443 RNA12: RNA12 protein; 21.4 3.9E+02 0.0083 25.8 7.2 147 25-182 16-193 (431)
310 PRK11144 modC molybdate transp 21.4 1.9E+02 0.0041 26.7 5.2 43 134-181 146-188 (352)
311 COG1122 CbiO ABC-type cobalt t 21.2 2.1E+02 0.0045 25.0 5.2 43 134-181 156-198 (235)
312 PRK14240 phosphate transporter 21.1 2.3E+02 0.0049 24.3 5.4 42 134-182 164-205 (250)
313 cd03263 ABC_subfamily_A The AB 21.1 1.9E+02 0.0041 24.2 4.8 41 134-181 151-191 (220)
314 PRK14267 phosphate ABC transpo 20.9 2.1E+02 0.0045 24.6 5.2 42 134-182 167-208 (253)
315 PRK14265 phosphate ABC transpo 20.7 2.1E+02 0.0046 25.1 5.2 57 134-208 179-235 (274)
316 cd03276 ABC_SMC6_euk Eukaryoti 20.7 1.9E+02 0.0042 24.1 4.7 44 134-182 131-176 (198)
317 PRK14242 phosphate transporter 20.5 2.3E+02 0.005 24.3 5.4 56 134-207 167-222 (253)
318 PRK14252 phosphate ABC transpo 20.3 2.2E+02 0.0049 24.7 5.3 41 134-181 179-219 (265)
319 cd03251 ABCC_MsbA MsbA is an e 20.3 2.2E+02 0.0048 24.0 5.1 42 134-182 156-197 (234)
320 PRK14247 phosphate ABC transpo 20.2 2.2E+02 0.0048 24.3 5.2 42 134-182 164-205 (250)
321 COG0444 DppD ABC-type dipeptid 20.2 1.5E+02 0.0032 27.4 4.0 43 134-181 171-213 (316)
322 PRK14261 phosphate ABC transpo 20.2 2.3E+02 0.0049 24.4 5.2 42 134-182 167-208 (253)
323 PRK14273 phosphate ABC transpo 20.1 2.3E+02 0.0049 24.4 5.2 42 134-182 168-209 (254)
324 PRK15439 autoinducer 2 ABC tra 20.0 1.6E+02 0.0035 28.5 4.6 57 134-207 421-477 (510)
No 1
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=100.00 E-value=3.2e-54 Score=379.58 Aligned_cols=231 Identities=39% Similarity=0.635 Sum_probs=198.4
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
=||+.|+++.+..| +|+++||+|+ +++|+|||||||+.+||++++ ||||+|+|+++||.++++|||+||.++++
T Consensus 4 eln~ll~~~~~~~~---~g~~ili~d~-~~dgsFLlh~~L~~~Lk~~~~--V~fv~~~q~~~HY~~v~~KLG~NL~~~~~ 77 (249)
T PF09807_consen 4 ELNSLLNWSPDSVP---PGKLILIEDC-ETDGSFLLHHFLSQYLKAGCK--VCFVAFSQSFSHYNNVAQKLGVNLSAAKE 77 (249)
T ss_pred HHHHHhcCCCCCCC---CCeEEEEEcC-CCCchhHHHHHHHHHhcCCCc--EEEEEccCCHHHHHHHHHhhEecchHhcc
Confidence 47889988777776 8999999999 999999999999999998877 99999999999999999999999999999
Q ss_pred CCceEEeeccccc----CCC-CC-CC-------CCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCCh
Q 024921 88 NKRFIFFDMLMLR----CPD-VD-EG-------KSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGS 154 (260)
Q Consensus 88 ~g~~~fvD~l~~~----~~~-~~-~~-------~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~ 154 (260)
+|||.|||+++.. +.+ .. .+ .++...+++||++|++++++..+ .++++|||||+++|+| +|++.
T Consensus 78 ~gql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~L~~L~~~I~~~l~~~~~--~~~~~liIDdls~Ll~-lG~s~ 154 (249)
T PF09807_consen 78 KGQLVFIDGLKSSLDLLFDEDSSDEPNPLKFLREDNASSLRSLYEFIQEALSPADS--NGSVVLIIDDLSVLLS-LGVSS 154 (249)
T ss_pred CCcEEEeehhhhhhhhhhccccccCCccccccccCCcchHHHHHHHHHHHHhhccC--CCCeEEEEeCHHHHHH-cCCCH
Confidence 9999999999943 331 11 11 12345699999999999996443 4679999999999998 69999
Q ss_pred HHHHHHHHHHHH-hhcccCCeEEEEeeccCCCCCCh-hHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCC
Q 024921 155 DYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSMER-PTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRL 232 (260)
Q Consensus 155 ~~v~~fi~~l~~-~~~~~~~~lv~l~h~~~~~~~e~-~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~ 232 (260)
.++++|+||||+ +|.+.++++|+++|.+...++|. +.|++.|.|+||++|+++||+||+||||||+|+|+|++....
T Consensus 155 ~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~~~e~~~~l~~~L~h~a~l~i~v~~L~TG~s~DVhGqL~v~~r~~~~~- 233 (249)
T PF09807_consen 155 NDVLDFIHYCRATLCSESNGSLVVLVHCDIDDEDEENDLLLNSLAHMADLVITVEPLPTGYSKDVHGQLTVLWRGNSSS- 233 (249)
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEEecCCCCccchHHHHHHHHHHHhcEEEEecCCCCcccccceEEEEEEEccCCcc-
Confidence 999999999995 58888899999999887654444 459999999999999999999999999999999998876543
Q ss_pred CCCCCceeeEeEEEec
Q 024921 233 GRSGNKIHNFHYKVKE 248 (260)
Q Consensus 233 ~~~~~~~~e~lY~v~D 248 (260)
+....+.++|||||+|
T Consensus 234 ~~~~~~~~~~~yKv~d 249 (249)
T PF09807_consen 234 GYHRPKTKTYQYKVQD 249 (249)
T ss_pred ccccccceEEEEeecC
Confidence 3445566799999987
No 2
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-36 Score=251.23 Aligned_cols=202 Identities=29% Similarity=0.424 Sum_probs=163.5
Q ss_pred CCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeeccc
Q 024921 19 SEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLM 98 (260)
Q Consensus 19 ~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~ 98 (260)
.+|.|++|+++|+.|+.+|+|+||+|+|++.+||++++ +||++|.++++||..++||||+||...+++|||.|+|+++
T Consensus 12 ~~~~~EqgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~--~cFlaf~k~fshy~i~~rKlG~~l~t~k~rgqlvF~dgl~ 89 (248)
T KOG4723|consen 12 LRPIPEQGKLTLLLDTRETPGSFLFHYYLYHALKANES--TCFLAFSKTFSHYAISMRKLGMDLKTKKNRGQLVFIDGLS 89 (248)
T ss_pred cCCCCCCccEEEEeecccCCceeeHHHHHHHHHhcCCc--EEEEEeecchhHHHHHHHHhCCceeecccCCcEEEEhhhh
Confidence 34447889999999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred ccCCCCC-----CC-------C-CCCcchHHHHHHHHHHhcC---CCCCCCCcEEEEEeChhHHHHHc-CCChHHHHHHH
Q 024921 99 LRCPDVD-----EG-------K-SSEGGLVLLYEKILKTICG---LPGDKKDYVTIMIDDISLVEVAA-NGGSDYVLDFL 161 (260)
Q Consensus 99 ~~~~~~~-----~~-------~-~~~~~l~~L~~~I~~~l~~---~~~~~~~~~~iIiDdl~~Ll~~~-g~~~~~v~~fi 161 (260)
..|.+.. ++ + ...+.++++++..++..+. ...-....+++.+||.++|++++ |--...|++|+
T Consensus 90 ~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~~~~~t~~vDd~sil~~~~~g~~~~~Vldfv 169 (248)
T KOG4723|consen 90 MLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDIDILQSTHAVDDTSILQAILEGRCFSRVLDFV 169 (248)
T ss_pred hhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeeecccceEEEchHHHHHHHHcccchHHHhhhh
Confidence 8887531 10 0 1112344444444443332 21111247899999999999764 44478899999
Q ss_pred HHHHHhhcccCCeEEEEeeccCCCC-CChhHHHHHcchhcceEEEeccCCCcCccceeEEEE
Q 024921 162 HYCHALTSEFDCSLITLNHEDIYSS-MERPTLILQMEYLADILIKAEPLSTGLATDVHGQLT 222 (260)
Q Consensus 162 ~~l~~~~~~~~~~lv~l~h~~~~~~-~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~ 222 (260)
|||..+|++++|+.|+++|.+...+ +++.-++..+.+...++++.+||.||.++|||||+.
T Consensus 170 hycatl~~e~~~~~vIlvH~~~~a~~erp~~ll~~~~~~~~l~l~aeplasG~c~Dvhgqv~ 231 (248)
T KOG4723|consen 170 HYCATLPQEKSLGSVILVHMATRAISERPLTLLSARRITGFLRLSAEPLASGICEDVHGQVL 231 (248)
T ss_pred hhccccchhhcCCeEEEEecccchhccCchhhhhhhhhcceEEEeccccccccccccchhhh
Confidence 9998889999999999999887653 455667778888888999999999999999999984
No 3
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.52 E-value=5.3e-13 Score=115.63 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=158.6
Q ss_pred hHHhhh--CCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHHHHHHhccccc
Q 024921 8 LLDRAL--GLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRILRKLGCNLVT 84 (260)
Q Consensus 8 ~l~~~l--~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~ 84 (260)
-||+.| |+ |+|+++||+...|+.-+-|..+|+.+.++. +.+ |+++|+.++..-+...++.+|+|+..
T Consensus 7 ~LD~~l~GGi--------p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~--vlyvs~ee~~~~l~~~~~s~g~d~~~ 76 (226)
T PF06745_consen 7 GLDELLGGGI--------PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEK--VLYVSFEEPPEELIENMKSFGWDLEE 76 (226)
T ss_dssp THHHHTTTSE--------ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTTS-HHH
T ss_pred hHHHhhcCCC--------CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc--EEEEEecCCHHHHHHHHHHcCCcHHH
Confidence 477888 44 589999999999999999999999999987 776 99999999999999999999999999
Q ss_pred cccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHH
Q 024921 85 QRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYC 164 (260)
Q Consensus 85 ~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l 164 (260)
+.++|++.|+|..+...... +..+..+...|.+.++.. +...+|||.++.|. . -.++.++.+|++.+
T Consensus 77 ~~~~g~l~~~d~~~~~~~~~------~~~~~~l~~~i~~~i~~~-----~~~~vVIDsls~l~-~-~~~~~~~r~~l~~l 143 (226)
T PF06745_consen 77 YEDSGKLKIIDAFPERIGWS------PNDLEELLSKIREAIEEL-----KPDRVVIDSLSALL-L-YDDPEELRRFLRAL 143 (226)
T ss_dssp HHHTTSEEEEESSGGGST-T------SCCHHHHHHHHHHHHHHH-----TSSEEEEETHHHHT-T-SSSGGGHHHHHHHH
T ss_pred HhhcCCEEEEeccccccccc------ccCHHHHHHHHHHHHHhc-----CCCEEEEECHHHHh-h-cCCHHHHHHHHHHH
Confidence 99999999999999654321 345777888888877754 34689999999993 3 35667778888888
Q ss_pred HHhhcccCCeEEEEeeccCCCCCChhHHHHHcch-hcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEe
Q 024921 165 HALTSEFDCSLITLNHEDIYSSMERPTLILQMEY-LADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFH 243 (260)
Q Consensus 165 ~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h-~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~l 243 (260)
....++.++++++..+.....+. .....+.| .||.+|.++--..|. .+.=.|+|.+-.... .....+.
T Consensus 144 ~~~l~~~~~t~llt~~~~~~~~~---~~~~~i~~~l~D~vI~L~~~~~~~--~~~R~l~I~K~Rg~~------~~~~~~~ 212 (226)
T PF06745_consen 144 IKFLKSRGVTTLLTSEMPSGSED---DGTFGIEHYLADGVIELRYEEEGG--RIRRRLRIVKMRGSR------HSTGIHP 212 (226)
T ss_dssp HHHHHHTTEEEEEEEEESSSSSS---SSSTSHHHHHSSEEEEEEEEEETT--EEEEEEEEEEETTS----------BEEE
T ss_pred HHHHHHCCCEEEEEEccccCccc---ccccchhhhcccEEEEEEEEeeCC--EEEEEEEEEEcCCCC------CCCcEEE
Confidence 87767777766666663322110 11233556 999999998655554 344456776643221 1346799
Q ss_pred EEEecCcEEEeeC
Q 024921 244 YKVKENTVEYFYP 256 (260)
Q Consensus 244 Y~v~D~~Vk~F~r 256 (260)
|.+.++|+++++|
T Consensus 213 f~I~~~Gi~i~~~ 225 (226)
T PF06745_consen 213 FEITPGGIEIYPP 225 (226)
T ss_dssp EEEETTEEEEETT
T ss_pred EEEECCeEEEecC
Confidence 9999999999975
No 4
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.39 E-value=1.2e-10 Score=101.93 Aligned_cols=213 Identities=12% Similarity=0.161 Sum_probs=151.4
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|+|++++|+...++.-+-+-.+|+...++.+.+ |++||+..+..-...-++.+|+|+..+.++|++.++|+.+.....
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~--~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~~ 96 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEP--GIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGE 96 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc--EEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEecccccccc
Confidence 479999999999999999999999998877666 999999999999999999999999999999999999998854321
Q ss_pred CC-CC---CCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEe
Q 024921 104 VD-EG---KSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLN 179 (260)
Q Consensus 104 ~~-~~---~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~ 179 (260)
.. .. ...+..+..+...|.++++.. +...||||.++.++. ..+.....+++.+....++.++++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~~~vVIDSls~l~~---~~~~~~r~~l~~l~~~lk~~~~t~llt~ 168 (237)
T TIGR03877 97 AAEREKYVVKDPTDVRELIDVLRQAIRDI-----NAKRVVIDSVTTLYI---TKPAMARSIVMQLKRVLSGLGCTSIFVS 168 (237)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHHh-----CCCEEEEcChhHhhc---CChHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 11 00 112345677888888877643 344799999999863 2333345666666666567777777776
Q ss_pred eccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEeeCC
Q 024921 180 HEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPG 257 (260)
Q Consensus 180 h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~rG 257 (260)
+.....+ ... ...+.|.||.+|.++--..| ..+.=.|.|.+-.... .....+.|.+.|+|+++|++.
T Consensus 169 ~~~~~~~-~~~--~~~~~~~~D~vI~L~~~~~~--~~~~R~l~i~K~Rg~~------~~~~~~~~~It~~Gi~v~~~~ 235 (237)
T TIGR03877 169 QVSVGER-GFG--GPGVEHAVDGIIRLDLDEID--GELKRSLIVWKMRGTK------HSMRRHPFEITDKGIIVYPDK 235 (237)
T ss_pred Ccccccc-ccc--ccceEEEEeEEEEEEEEeeC--CceEEEEEEEECCCCC------CCCceEEEEEcCCCEEEEeCC
Confidence 5443211 000 12468999999999855443 2233346665543211 133678899999999999874
No 5
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.38 E-value=1.9e-10 Score=100.22 Aligned_cols=216 Identities=18% Similarity=0.174 Sum_probs=155.1
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||+.|+ .. .|.|++++|+...|+.-+-|..+|+...++.+.+ |+++++.++..-+...+.++|+++..+..
T Consensus 13 ~LD~~l~--gG----~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~--~~y~~~e~~~~~~~~~~~~~g~~~~~~~~ 84 (234)
T PRK06067 13 ELDRKLG--GG----IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKK--VYVITTENTSKSYLKQMESVKIDISDFFL 84 (234)
T ss_pred HHHHhhC--CC----CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCE--EEEEEcCCCHHHHHHHHHHCCCChhHHHh
Confidence 4677773 22 2479999999999999999999999988886655 99999999999999999999999999888
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHh
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHAL 167 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~ 167 (260)
+|.+.|++.....+. ..+..++.+++.+.+.+++. +..++|||.++.++. ..+..++..|++.++.+
T Consensus 85 ~g~l~i~~~~~~~~~------~~~~~~~~ll~~l~~~i~~~-----~~~~iviDs~t~~~~--~~~~~~~~~~l~~l~~l 151 (234)
T PRK06067 85 WGYLRIFPLNTEGFE------WNSTLANKLLELIIEFIKSK-----REDVIIIDSLTIFAT--YAEEDDILNFLTEAKNL 151 (234)
T ss_pred CCCceEEeccccccc------cCcchHHHHHHHHHHHHHhc-----CCCEEEEecHHHHHh--cCCHHHHHHHHHHHHHH
Confidence 899999876553221 12345677888888877642 455899999998864 35566778888777665
Q ss_pred hcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEe
Q 024921 168 TSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVK 247 (260)
Q Consensus 168 ~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~ 247 (260)
.. .++++++..|..... ......+.+.+|-+|.++....|- -.-=.|.|.+-... .+..+..+.|.+.
T Consensus 152 ~~-~g~tvllt~~~~~~~----~~~~~~~~~l~DgvI~L~~~~~~~--~~~r~l~i~K~Rg~-----~~~~~~~~~~~I~ 219 (234)
T PRK06067 152 VD-LGKTILITLHPYAFS----EELLSRIRSICDVYLKLRAEQIGG--RYVKVLEVVKLRGA-----RKTTGNIISFDVD 219 (234)
T ss_pred Hh-CCCEEEEEecCCcCC----HHHHHHHHhheEEEEEEEeeccCC--EEeEEEEEEhhcCC-----CCCCCCEEEEEEc
Confidence 44 346666666654321 235567899999999998755432 22233555553221 1123367889998
Q ss_pred c-CcEEEeeC
Q 024921 248 E-NTVEYFYP 256 (260)
Q Consensus 248 D-~~Vk~F~r 256 (260)
+ .|+++|+|
T Consensus 220 ~~~Gi~v~~~ 229 (234)
T PRK06067 220 PAFGIKIIPL 229 (234)
T ss_pred CCCCeEEEEe
Confidence 7 59999986
No 6
>PRK04328 hypothetical protein; Provisional
Probab=99.36 E-value=1.6e-10 Score=102.14 Aligned_cols=223 Identities=13% Similarity=0.163 Sum_probs=154.4
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||+.|+ +.. |+|++++|+...++.-+-|-.+|+...++.+.+ ++++++..+...+...++.+|+|+..+.+
T Consensus 11 ~LD~lL~--GGi----p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~--~lyis~ee~~~~i~~~~~~~g~d~~~~~~ 82 (249)
T PRK04328 11 GMDEILY--GGI----PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEP--GVYVALEEHPVQVRRNMRQFGWDVRKYEE 82 (249)
T ss_pred hHHHHhc--CCC----cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCc--EEEEEeeCCHHHHHHHHHHcCCCHHHHhh
Confidence 4677773 222 479999999999998889999999998887766 99999999999999999999999999999
Q ss_pred CCceEEeecccccCCCCCC-C---CCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHH
Q 024921 88 NKRFIFFDMLMLRCPDVDE-G---KSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHY 163 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~-~---~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~ 163 (260)
+|++.++|..+........ . ...+..+..+.+.|.+.+++. +...+|||.++.|.. .+......++..
T Consensus 83 ~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~~~vVIDSlt~l~~---~~~~~~r~~~~~ 154 (249)
T PRK04328 83 EGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDI-----GAKRVVIDSVSTLYL---TKPAMARSIVMQ 154 (249)
T ss_pred cCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhh-----CCCEEEEeChhHhhc---CChHHHHHHHHH
Confidence 9999999998855432111 0 012334667777787777654 345799999999863 223333455555
Q ss_pred HHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEe
Q 024921 164 CHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFH 243 (260)
Q Consensus 164 l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~l 243 (260)
+....++.++++++..+.....+ .. --..+.|.||.+|.++-...| ....=.+.|.+-.... .....+.
T Consensus 155 l~~~lk~~g~t~llt~e~~~~~~-~~--~~~~~~~~~D~vI~L~~~~~~--~~~~R~l~I~K~Rg~~------~~~~~~~ 223 (249)
T PRK04328 155 LKRVLSGLGCTAIFVSQVSVGER-GF--GGPGVEHAVDGIIRLDLDEID--GELKRSLIVWKMRGTK------HSMRRHP 223 (249)
T ss_pred HHHHHHhCCCEEEEEECcccccc-cc--CCCCcEEEEEEEEEEEEEecC--CcEEEEEEEEEccCCC------CCCceEE
Confidence 55544566777777666543211 00 012368899999999865543 2233345555532211 1336789
Q ss_pred EEEecCcEEEeeCC
Q 024921 244 YKVKENTVEYFYPG 257 (260)
Q Consensus 244 Y~v~D~~Vk~F~rG 257 (260)
|.+.++|+.+|++.
T Consensus 224 ~~It~~Gi~v~~~~ 237 (249)
T PRK04328 224 FEITDKGIVVYPDK 237 (249)
T ss_pred EEEcCCCEEEEecc
Confidence 99999999999864
No 7
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.23 E-value=2.1e-09 Score=92.98 Aligned_cols=218 Identities=17% Similarity=0.143 Sum_probs=146.2
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||+.|| +. .|.|++++|....++.-+.+..+|+...++.+.+ |+++++..+..-....++++|.++....+
T Consensus 4 ~LD~~l~--gG----i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~--~~y~s~e~~~~~l~~~~~~~~~~~~~~~~ 75 (224)
T TIGR03880 4 GLDEMLG--GG----FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEK--AMYISLEEREERILGYAKSKGWDLEDYID 75 (224)
T ss_pred hhHHHhc--CC----CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe--EEEEECCCCHHHHHHHHHHcCCChHHHHh
Confidence 4677773 12 1469999999998999989999999998887655 99999999999999999999999988776
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHh
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHAL 167 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~ 167 (260)
+ ++.++|.....+. ..+..+...+...+++. +...+|||.++.+....+ ...+....+..+...
T Consensus 76 ~-~l~~~~~~~~~~~---------~~~~~l~~~~~~~i~~~-----~~~~vVIDsls~l~~~~~-~~~~~r~~l~~l~~~ 139 (224)
T TIGR03880 76 K-SLYIVRLDPSDFK---------TSLNRIKNELPILIKEL-----GASRVVIDPISLLETLFD-DDAERRTELFRFYSS 139 (224)
T ss_pred C-CeEEEecCHHHHH---------hhHHHHHHHHHHHHHHh-----CCCEEEEcChHHHhhhcC-CHHHHHHHHHHHHHH
Confidence 6 7888885442111 12345555555555433 244789999999854333 323333444433332
Q ss_pred hcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEe
Q 024921 168 TSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVK 247 (260)
Q Consensus 168 ~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~ 247 (260)
.++.++++++..|......... -...+.+.||-+|.++-...|..+...-.|+|.+-.... .....+.|.+.
T Consensus 140 lk~~~~tvll~s~~~~~~~~~~--~~~~~~~l~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~------~~~~~~~~~i~ 211 (224)
T TIGR03880 140 LRETGVTTILTSEADKTNVFAS--KYGLIEYLADGVIILKYVRNSDLRDVRLAVEVVKMRRSK------HSREIKPYEIT 211 (224)
T ss_pred HHhCCCEEEEEEcccCCCCCcc--CCCceEEEEeEEEEEeeeecccCcceEEEEEEEEccCCC------CCCceEEEEEc
Confidence 2355677888887543211000 023379999999999866656444444457776643221 13467889999
Q ss_pred cCcEEEeeCC
Q 024921 248 ENTVEYFYPG 257 (260)
Q Consensus 248 D~~Vk~F~rG 257 (260)
|+|++++..+
T Consensus 212 ~~Gi~v~~~~ 221 (224)
T TIGR03880 212 DSGITVYSEA 221 (224)
T ss_pred CCcEEEeccC
Confidence 9999999765
No 8
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.18 E-value=7.9e-09 Score=91.55 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=159.0
Q ss_pred HHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccC
Q 024921 9 LDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDN 88 (260)
Q Consensus 9 l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~ 88 (260)
||++|+ .-. |+++.++|+...|+.-+.+..||+...++.+.+ |++||+.++.......++..|.|+..+.++
T Consensus 12 lD~~l~---GG~---p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~--vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~ 83 (260)
T COG0467 12 LDEILG---GGL---PRGSVVLITGPPGTGKTIFALQFLYEGAREGEP--VLYVSTEESPEELLENARSFGWDLEVYIEK 83 (260)
T ss_pred hHHHhc---CCC---cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCc--EEEEEecCCHHHHHHHHHHcCCCHHHHhhc
Confidence 677776 222 489999999999999999999999999998766 999999999999999999999999999999
Q ss_pred CceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhh
Q 024921 89 KRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALT 168 (260)
Q Consensus 89 g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~ 168 (260)
|++.++|.+................+..+...|...++... ...+|+|.++.+....... .....++..+....
T Consensus 84 g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-----~~~~ViDsi~~~~~~~~~~-~~~r~~~~~l~~~~ 157 (260)
T COG0467 84 GKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-----ADRVVIDSITELTLYLNDP-ALVRRILLLLKRFL 157 (260)
T ss_pred CCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-----CCEEEEeCCchHhhhcCch-HHHHHHHHHHHHHH
Confidence 99999999996544211011113456778888888877652 5579999999775333332 22245555555443
Q ss_pred cccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEec
Q 024921 169 SEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKE 248 (260)
Q Consensus 169 ~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D 248 (260)
.+..++.++.. .....+ .... ....+.+|-+|.++...-+...+.. .+.|.+..... ...+.+.|.+.+
T Consensus 158 ~~~~~t~~~~~-~~~~~~-~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~-~~~i~k~r~~~------~~~~~~~~~i~~ 226 (260)
T COG0467 158 KKLGVTSLLTT-EAPVEE-RGES--GVEEYIVDGVIRLDLKEIEGGGDRR-YLRILKMRGTP------HSLKVIPFEITD 226 (260)
T ss_pred HhCCCEEEEEe-cccccC-CCcc--ceEEEEEEEEEEEeeecccCceEEE-EEEEEeccccc------cCCceeceEEec
Confidence 44433322222 211111 1110 2344499999999998888777776 88887765321 234678899998
Q ss_pred -CcEEEeeCCc
Q 024921 249 -NTVEYFYPGS 258 (260)
Q Consensus 249 -~~Vk~F~rG~ 258 (260)
+|++++.++.
T Consensus 227 g~gi~i~~~~~ 237 (260)
T COG0467 227 GEGIVVYPEGR 237 (260)
T ss_pred CCcEEEecCcc
Confidence 7999998763
No 9
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.12 E-value=9.6e-09 Score=99.49 Aligned_cols=221 Identities=15% Similarity=0.172 Sum_probs=152.4
Q ss_pred hHHhhh--CCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHHHHHHhccccc
Q 024921 8 LLDRAL--GLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRILRKLGCNLVT 84 (260)
Q Consensus 8 ~l~~~l--~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~ 84 (260)
-||+.| |+ |+|+++||+...|+.-+-|..+|+...++. +.+ |+++++.++.+-...-+..+|+++..
T Consensus 19 ~LD~~l~GG~--------p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~--~lyis~ee~~~~i~~~~~~~g~d~~~ 88 (509)
T PRK09302 19 GFDDITHGGL--------PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEP--GVFVTFEESPEDIIRNVASFGWDLQK 88 (509)
T ss_pred hHHHhhcCCC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCC--EEEEEccCCHHHHHHHHHHcCCCHHH
Confidence 367776 34 579999999999999999999999988876 555 99999999999999999999999999
Q ss_pred cccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHH
Q 024921 85 QRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYC 164 (260)
Q Consensus 85 ~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l 164 (260)
+.++|++.|+|....... ........+..++..|.+.++.. +...||||.++.+.... .+...+..++..+
T Consensus 89 ~~~~g~l~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~i~~~-----~~~~vVIDSls~l~~~~-d~~~~~r~~l~~L 159 (509)
T PRK09302 89 LIDEGKLFILDASPDPSE---QEEAGEYDLEALFIRIEYAIDKI-----GAKRVVLDSIEALFSGF-SNEAVVRRELRRL 159 (509)
T ss_pred HhhCCeEEEEecCccccc---ccccccccHHHHHHHHHHHHHhh-----CCCEEEECCHHHHHhhc-cCHHHHHHHHHHH
Confidence 999999999998653211 11122345677888888877654 34569999999987432 2233334455444
Q ss_pred HHhhcccCCeEEEEeeccCC-CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEe
Q 024921 165 HALTSEFDCSLITLNHEDIY-SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFH 243 (260)
Q Consensus 165 ~~~~~~~~~~lv~l~h~~~~-~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~l 243 (260)
.....+.++++++..|.... .+.. -.....+.||-+|.++-..-| ....=.|.|.+-.... .....+.
T Consensus 160 ~~~Lk~~g~TvLlt~~~~~~~~~~~---~~~~~~~laDgVI~L~~~~~~--~~~~R~l~I~K~Rg~~------~~~~~~~ 228 (509)
T PRK09302 160 FAWLKQKGVTAVITGERGDEYGPLT---RYGVEEFVSDCVIILRNRLEG--EKRTRTLRILKYRGTT------HGKNEYP 228 (509)
T ss_pred HHHHHhCCCEEEEEECCccCcCCcc---ccCceEEEeeEEEEEeEEccC--CeEEEEEEEEECCCCC------cCCccEE
Confidence 44444566777777765321 1111 111246799999999855433 1223446665533211 1224699
Q ss_pred EEEecCcEEEeeCCc
Q 024921 244 YKVKENTVEYFYPGS 258 (260)
Q Consensus 244 Y~v~D~~Vk~F~rG~ 258 (260)
|.+.|+|+++|++..
T Consensus 229 f~I~~~Gi~v~p~~~ 243 (509)
T PRK09302 229 FTITEDGISVLPLTA 243 (509)
T ss_pred EEECCCcEEEEeccc
Confidence 999999999998853
No 10
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.09 E-value=3.9e-08 Score=85.25 Aligned_cols=210 Identities=14% Similarity=0.176 Sum_probs=144.8
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|+|++++|....++.-+-|..+|+...++.+.+ |+++++..+.+.....++++|+++..+.+++++.++|.+...-..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~--~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDP--VIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCe--EEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 579999999999999999999999887776544 999999999988888899999999999888999999966521100
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
........+..+...+++.++... .+...++||.++.+.. . .+.....+++.+.....+.++++++++|...
T Consensus 96 --~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~vvIDsl~~l~~--~-~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 96 --EWSLRELSIEELLNKVIEAKKYLG---YGHARLVIDSMSAFWL--D-KPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred --ccccccCCHHHHHHHHHHHHHhhc---cCceEEEecCchhhhc--c-ChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 000112346677777777766432 1356899999999852 2 2233345666666665667888888888432
Q ss_pred CCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEec-CcEEEe
Q 024921 184 YSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKE-NTVEYF 254 (260)
Q Consensus 184 ~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D-~~Vk~F 254 (260)
..+. .+...+.|.||-+|.++-..-+ +.+.=.|.|.+-.... .....+.|.+.+ +|++++
T Consensus 168 ~~~~---~~~~~~~~l~D~vI~L~~~~~~--~~~~R~i~i~K~R~~~------~~~~~~~~~I~~~~Gi~v~ 228 (229)
T TIGR03881 168 TTSQ---AFGFGIEHVADGIIRFRKVVVD--GELRRYLIVEKMRQTN------HDKRAWEIDIVPGKGLVLK 228 (229)
T ss_pred cCCC---CcccceEEEEeEEEEEEEeccC--CcEEEEEEEEeccCCC------CCCceeEEEEcCCCceEEe
Confidence 1111 1223578999999999976644 2344446665543211 133578899974 789876
No 11
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.08 E-value=1.4e-08 Score=98.35 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=146.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|.|++++|....++.-+.|..+|+...++.+.+ |++++|.++.+-+...++++|+|+..+.++|.+.|++.....
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~--~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~--- 345 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEAACRRGER--CLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPES--- 345 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCc--EEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCccc---
Confidence 479999999999999999999999999887766 999999999999999999999999999999999988764321
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
..+..+...|.+.+++. +...||||.++.+... .+..++..+++.+....++.++++++..+...
T Consensus 346 --------~~~~~~~~~i~~~i~~~-----~~~~vVIDslt~l~~~--~~~~~~~~~l~~l~~~~k~~~~t~l~t~~~~~ 410 (509)
T PRK09302 346 --------YGLEDHLIIIKREIEEF-----KPSRVAIDPLSALARG--GSLNEFRQFVIRLTDYLKSEEITGLFTNLTPD 410 (509)
T ss_pred --------CCHHHHHHHHHHHHHHc-----CCCEEEEcCHHHHHHh--CCHHHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 12455666777766643 3458999999999753 34456677887777666667666666655332
Q ss_pred C-CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEeeCC
Q 024921 184 Y-SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPG 257 (260)
Q Consensus 184 ~-~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~rG 257 (260)
. ...+. -...+.|.||-+|.++--..+- .+.=.|.|.+..... .....+.|.+.++|+++-.|.
T Consensus 411 ~~g~~~~--~~~~~~~l~D~vI~L~~~~~~~--~~~R~l~I~K~Rg~~------~~~~~~~f~It~~Gi~v~~~~ 475 (509)
T PRK09302 411 FMGSHSI--TESHISSLTDTWILLQYVEING--EMNRALYVLKMRGSW------HSNQIREFVITDKGIHIKDPF 475 (509)
T ss_pred ccCCCCC--CcCceEEeeeEEEEEEEeecCC--eeEEEEEEEEcCCCC------CCCceEEEEEeCCcEEEcccc
Confidence 1 10011 1124789999999998655331 122236655543211 133578899999999998763
No 12
>PF10483 Elong_Iki1: Elongator subunit Iki1; InterPro: IPR019519 Histone acetylation protein (Hap) 2 (also known as Elongator complex protein 5) is one of three histone acetyltransferases proteins that, in yeasts, are found associated with elongating forms of RNA polymerase II (Elongator). The Haps can be isolated in two forms, as a six-subunit complex with Elongator, and as a complex of the three proteins on their own. The role of the Hap complex in transcription is still speculative, being possibly to keep the histone acetylation activity of free Elongator in check, allowing histone acetylation only in the presence of a transcribing polymerase, or the interaction with Haps might render Elongator susceptible to modifications thereby altering its activity []. This protein family also contains Dermal papilla-derived protein 6, which also belong to the ELP5 family. ; PDB: 4A8J_B 4EJS_B.
Probab=99.07 E-value=1.1e-08 Score=92.08 Aligned_cols=177 Identities=23% Similarity=0.300 Sum_probs=104.6
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
||+..|.+++ +. .|+||.|++..+|..|+..|+.++...+.+ |++|||..... .-|++
T Consensus 1 ll~rlL~lrd-~s------pl~Li~DSl~q~a~~Ll~e~i~~a~~~~~~--V~~lsfEt~~~-------~~~~d------ 58 (280)
T PF10483_consen 1 LLSRLLSLRD-AS------PLTLILDSLEQSARPLLKEFIRRAKSRNEK--VHFLSFETLNK-------PEYAD------ 58 (280)
T ss_dssp HHHHHHTT-S---------SEEEEEEBTTB-SHHHHHHHHHHHTS------EEEEESS--S---------TT-S------
T ss_pred ChhHHhCccC-CC------CeEEEEEcccccCHHHHHHHHHHHHcCCCe--EEEEEeEeCCC-------cccCC------
Confidence 6788888876 44 599999999999999999999999776655 99999886443 11222
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHh
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHAL 167 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~ 167 (260)
.|+++-. ..+..+.+.|............++.+||||.++.|+...+. ++..|++.+++
T Consensus 59 ----~~~~~~~-------------~~~~~i~~~i~s~~~~~~~~~~~~~lVvIDSLn~ll~~~~~---~l~~fLssl~~- 117 (280)
T PF10483_consen 59 ----SFINARG-------------KSLQDIVKEIKSHLPSSSSSPTKKFLVVIDSLNYLLNHHPC---QLSQFLSSLLS- 117 (280)
T ss_dssp ----EEEETTS-------------S-HHHHHHHHHHTS--SS-SS---EEEEES-GGGS-GG------GHHHHHHHH---
T ss_pred ----eeccccC-------------CCHHHHHHHHHhhcccccccCCCCeEEEEEcchHHHHHHHH---HHHHHHHhccc-
Confidence 4555542 24566777777763222222346899999999998743333 88889887754
Q ss_pred hcccCCeEEEEeeccC-CC--CCChhHHHHHcchhcceEEEeccCCC-----------------cCc---cceeEEEEEE
Q 024921 168 TSEFDCSLITLNHEDI-YS--SMERPTLILQMEYLADILIKAEPLST-----------------GLA---TDVHGQLTVL 224 (260)
Q Consensus 168 ~~~~~~~lv~l~h~~~-~~--~~e~~~l~~~L~h~a~~~i~l~pL~T-----------------G~a---~DVtG~L~v~ 224 (260)
...++||.+.|.|. +. ......-+..|.|+|..+|+|.|+.. |+. ..+.+.+++.
T Consensus 118 --~p~~svv~~~H~Dl~~~~~~~~~P~~l~lL~~LATtii~v~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~l~ 195 (280)
T PF10483_consen 118 --SPQSSVVGLYHTDLLPPSQNPYYPSPLSLLSYLATTIITVEPLSHISADKEALDRSLSKPEFGLGEGLNGVGFVLELE 195 (280)
T ss_dssp ---TTEEEEEEEETTS---TTB-TS--HHHHHHHH-SEEEEEEE---SS--HHHHHHHHHTT---SS---S-SEEEEEEE
T ss_pred --CCCcEEEEEEccCcCcccccccCcCHHHHHHHhceEEEEEcccCccchhHHHHHhhhhhcccChhhhccCceEEEEEE
Confidence 23368999999996 11 00112468899999999999999876 222 3457788777
Q ss_pred ecCCC
Q 024921 225 NKGTS 229 (260)
Q Consensus 225 ~~~~~ 229 (260)
.+...
T Consensus 196 ~Rrks 200 (280)
T PF10483_consen 196 NRRKS 200 (280)
T ss_dssp EE-TT
T ss_pred EEcCC
Confidence 76543
No 13
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=8.1e-08 Score=82.25 Aligned_cols=203 Identities=15% Similarity=0.194 Sum_probs=152.9
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|-|++++|....+|.-+-|-.+|+.-+|.++.+ |..||...+---|-+-+.-+|+++..+--+|++.|+..-.+.+-.
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~--v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYR--VTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHHHHHhCCce--EEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 479999999999999999999999999998876 999999999999999999999999999999999999875543211
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
.+..-+.+++.+.+.++. +..-+||||.++.... ..+.++++.|+..||.+|.+.+ .+++.+|.+.
T Consensus 104 ------~~~~~~~~L~~l~~~~k~-----~~~dViIIDSls~~~~--~~~~~~vl~fm~~~r~l~d~gK-vIilTvhp~~ 169 (235)
T COG2874 104 ------GRRSARKLLDLLLEFIKR-----WEKDVIIIDSLSAFAT--YDSEDAVLNFMTFLRKLSDLGK-VIILTVHPSA 169 (235)
T ss_pred ------ChHHHHHHHHHHHhhHHh-----hcCCEEEEecccHHhh--cccHHHHHHHHHHHHHHHhCCC-EEEEEeChhh
Confidence 122334455555554442 3567999999999973 4577899999999999987654 3555666665
Q ss_pred CCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEe-cCcEEE
Q 024921 184 YSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVK-ENTVEY 253 (260)
Q Consensus 184 ~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~-D~~Vk~ 253 (260)
..| +....+...||+.+.++--+=| .|.-=.+.|.+-... .....+..-|.|. .-|.|+
T Consensus 170 l~e----~~~~rirs~~d~~l~L~~~~~G--g~~~~~~~i~K~~ga-----~~s~~~~I~F~V~P~~Glkv 229 (235)
T COG2874 170 LDE----DVLTRIRSACDVYLRLRLEELG--GDLIKVLEIVKYRGA-----RKSFQNIISFRVEPGFGLKV 229 (235)
T ss_pred cCH----HHHHHHHHhhheeEEEEhhhhC--CeeeEEEEEeeecCc-----hhhcCCceeEEecCCCceEE
Confidence 443 4778889999999999865544 466666777664422 1123467888886 556665
No 14
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.95 E-value=1.1e-07 Score=91.59 Aligned_cols=211 Identities=13% Similarity=0.135 Sum_probs=142.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCP 102 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~ 102 (260)
|+|+.++|+...|+.=+-|-.||+...++. +.+ +++|+|.++.+-+...++++|+++..+.++|++.++|.......
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~--~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEP--GVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC--EEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Confidence 579999999999999999999999987665 556 99999999999999999999999999999999999997543211
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCC---hHHHHHHHHHHHHhhcccCCeEEEEe
Q 024921 103 DVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGG---SDYVLDFLHYCHALTSEFDCSLITLN 179 (260)
Q Consensus 103 ~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~---~~~v~~fi~~l~~~~~~~~~~lv~l~ 179 (260)
. .....-.+..+.+.+...++.. ..-.|+||.+..|....... ..++..+++.+ .+.++++++..
T Consensus 97 ~---~~~~~~~l~~~l~~i~~~ls~g-----~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L----~~~g~TvLLts 164 (484)
T TIGR02655 97 Q---DVVGGFDLSALIERINYAIRKY-----KAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARL----KQIGVTTVMTT 164 (484)
T ss_pred c---cccccCCHHHHHHHHHHHHHHh-----CCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHH----HHCCCEEEEEe
Confidence 0 0011234566777777777642 34469999999886432221 12233344333 34567777777
Q ss_pred eccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEeeCCc
Q 024921 180 HEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGS 258 (260)
Q Consensus 180 h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~rG~ 258 (260)
|........ .-.....+.||-+|.++-...|- ...=.|+|.+-.... -....+.|.+.|+|+++|++..
T Consensus 165 h~~~~~~~~--~~~~~~e~laDgVI~L~~~~~~~--~~~R~l~I~K~Rgs~------~~~~~~~~~It~~Gi~v~p~~~ 233 (484)
T TIGR02655 165 ERIEEYGPI--ARYGVEEFVSDNVVILRNVLEGE--RRRRTLEILKLRGTS------HMKGEYPFTITDHGINIFPLGA 233 (484)
T ss_pred cCccccccc--ccCCceeEeeeeEEEEEEEecCC--EEEEEEEEEECCCCC------cCCceEEEEEcCCcEEEEeccc
Confidence 754211100 01112378999999998665542 122346666643211 1336788999999999998764
No 15
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.85 E-value=2.9e-07 Score=88.80 Aligned_cols=203 Identities=11% Similarity=0.116 Sum_probs=142.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|+|+++||+...|+.-+-|..+|+...++.+.+ |+++||.++.+-+..-++++|+++..+.++|++.+++.....
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~--~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~--- 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKER--AILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPES--- 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccccc---
Confidence 479999999999999999999999999987666 999999999999999999999999999999999999876532
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
..+......|.+.++.. ++..||||.++.+.+. .+..++..+++.|....++.+.++++..-...
T Consensus 336 --------~~~~~~~~~i~~~i~~~-----~~~~vvIDsi~~~~~~--~~~~~~r~~~~~l~~~lk~~~it~~~t~~~~~ 400 (484)
T TIGR02655 336 --------AGLEDHLQIIKSEIADF-----KPARIAIDSLSALARG--VSNNAFRQFVIGVTGYAKQEEITGFFTNTSDQ 400 (484)
T ss_pred --------CChHHHHHHHHHHHHHc-----CCCEEEEcCHHHHHHh--cCHHHHHHHHHHHHHHHhhCCCeEEEeecccc
Confidence 12345666666666543 4568999999999864 45566666777666655555554444322221
Q ss_pred -CCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEeeC
Q 024921 184 -YSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYP 256 (260)
Q Consensus 184 -~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~r 256 (260)
....... ...+.+.||-+|.++-...+ +.+.=.|.|.+..... -....+-|.+.++|+++-+|
T Consensus 401 ~~~~~~~~--~~~~s~l~D~ii~l~~~e~~--g~~~r~i~V~K~R~~~------~~~~~~~~~It~~Gi~v~~~ 464 (484)
T TIGR02655 401 FMGSHSIT--DSHISTITDTILMLQYVEIR--GEMSRAINVFKMRGSW------HDKGIREFMISDKGPEIKDS 464 (484)
T ss_pred cccCCccC--CCCeeEeeeEEEEEEEEecC--CEEEEEEEEEEccCCC------CCCceEEEEEcCCcEEEccc
Confidence 1110000 12468899999999865543 1233334443332110 13356779999999999755
No 16
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.71 E-value=3.4e-06 Score=73.73 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=132.5
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|++++++|....|+.=+-+..+++...++.+.+ ++++++..+..-+...++++|.++..+..+|++.+++........
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--VSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--EEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 479999999999999999999999988876655 999999999988888889999999999999999998876532211
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
.........+...+.. ..+.++|||.++.++.. ..+......+++.++.+..+ ++ .+++.|...
T Consensus 100 --------~~~~~~l~~il~~~~~-----~~~~~lVIDe~t~~l~~-~~d~~~~~~l~~~l~~l~~~-g~-tvi~t~~~~ 163 (230)
T PRK08533 100 --------SEKRKFLKKLMNTRRF-----YEKDVIIIDSLSSLISN-DASEVAVNDLMAFFKRISSL-NK-VIILTANPK 163 (230)
T ss_pred --------HHHHHHHHHHHHHHHh-----cCCCEEEEECccHHhcC-CcchHHHHHHHHHHHHHHhC-CC-EEEEEeccc
Confidence 1112232333333221 24568999999998732 23333334444444444332 33 344444322
Q ss_pred CCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecC-cEEEe
Q 024921 184 YSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKEN-TVEYF 254 (260)
Q Consensus 184 ~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~-~Vk~F 254 (260)
..+.+ ....+.|.||-+|.++-..-| .+..=.|.|.+-.. ..+..++.|.|.+.++ |+.+=
T Consensus 164 ~~~~~---~~~~~~~~~DgvI~L~~~~~~--~~~~R~i~V~KmR~-----~~~~~~~~~~f~i~~~~g~~~~ 225 (230)
T PRK08533 164 ELDES---VLTILRTAATMLIRLEVKVFG--GDLKNSAKIVKYNM-----AKGSFQKSIPFRVEPKIGLAVE 225 (230)
T ss_pred ccccc---cceeEEEeeeEEEEEEEeecC--CEEEEEEEEEEecC-----CccccCCEEEEEEcCCccEEEE
Confidence 11111 123689999999999976655 33444466555332 1223467899999865 77663
No 17
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.60 E-value=7.1e-06 Score=72.89 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=130.6
Q ss_pred CCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCch----hHHHHHHHHhccccccccCCceEEeeccc
Q 024921 23 PLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS----HYDRILRKLGCNLVTQRDNKRFIFFDMLM 98 (260)
Q Consensus 23 ~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~----hy~~~~~KlG~nL~~~~~~g~~~fvD~l~ 98 (260)
.|+|++++|+...|+.=+-+..+|+.+.++.+.+ |+++|+..+.. .....++++|+++..+. +++.++|..+
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~--vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~--~~l~~id~~~ 108 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNP--VLFVTVESPANFVYTSLKERAKAMGVDFDKIE--ENIILIDAAS 108 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCc--EEEEEecCCchHHHHHHHHHHHHcCCCHHHHh--CCEEEEECCC
Confidence 3579999999999999999999999988877666 99999997664 35566788999988764 3688888765
Q ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEE
Q 024921 99 LRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITL 178 (260)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l 178 (260)
.... ...+..+...+...+++. +...||||.++.+... .......++..+....++.+++++++
T Consensus 109 ~~~~--------~~~~~~l~~~l~~~i~~~-----~~~~vVIDSls~l~~~---~~~~~r~~~~~L~~~lk~~~~t~ll~ 172 (259)
T TIGR03878 109 STEL--------RENVPNLLATLAYAIKEY-----KVKNTVIDSITGLYEA---KEMMAREIVRQLFNFMKKWYQTALFV 172 (259)
T ss_pred chhh--------hhhHHHHHHHHHHHHHhh-----CCCEEEEcCchHhccc---chHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 2110 123556777777766543 3558999999987521 22334556665655555667777777
Q ss_pred eeccCCCCC--ChhHHHHHcchhcceEEEeccCCCc----------CccceeEEEEEEecCCCCCCCCCCCceeeEeEEE
Q 024921 179 NHEDIYSSM--ERPTLILQMEYLADILIKAEPLSTG----------LATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKV 246 (260)
Q Consensus 179 ~h~~~~~~~--e~~~l~~~L~h~a~~~i~l~pL~TG----------~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v 246 (260)
.+.....+. .....-..+.|.+|-+|.++-..-+ ......=.|.|.+-.... -....+.|.+
T Consensus 173 ~e~~~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R~l~I~KmRg~~------h~~~~~~~~I 246 (259)
T TIGR03878 173 SQKRSGHEELSAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGEIVRLFRIDGCRMCG------HDTKTHVLEI 246 (259)
T ss_pred eccccCcccccccccCCcceeEeeccEEEEeeeeccchhhhhhccccccceEEEEEEEEccCCC------CCCceeEEEE
Confidence 653221110 0011112479999999999842211 111233335555532211 1336788999
Q ss_pred ecCc-EEE
Q 024921 247 KENT-VEY 253 (260)
Q Consensus 247 ~D~~-Vk~ 253 (260)
.++| +++
T Consensus 247 t~~Gi~~i 254 (259)
T TIGR03878 247 DETGLVKI 254 (259)
T ss_pred cCCceEEe
Confidence 9988 544
No 18
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.56 E-value=1.2e-05 Score=69.73 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=137.0
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCC----CCCeEEEEEeccC--chhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPT----SSNVIIFVAFANP--FSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~----~~~~Vvlvs~~~~--~~hy~~~~~KlG~n 81 (260)
-||.+|+ + ..|.|+++.|....|+-=+.|..++....+..+ ...+|+++++.++ ...+..++++.|.+
T Consensus 7 ~lD~~l~--G----Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 7 ALDELLG--G----GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred hhHhhcc--C----CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 4666663 2 235799999999999999999999987766543 1235999999884 56778888888887
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CC-----Ch
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NG-----GS 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~-----~~ 154 (260)
..... .++.+++..+ ...+..+++.+...+.+. .+..+||||.++.+++.. +. ..
T Consensus 81 ~~~~~--~~i~~~~~~~------------~~~l~~~l~~l~~~l~~~----~~~~liVIDSis~~~~~~~~~~~~~~~r~ 142 (235)
T cd01123 81 PEEVL--DNIYVARAYN------------SDHQLQLLEELEAILIES----SRIKLVIVDSVTALFRAEFDGRGELAERQ 142 (235)
T ss_pred hHhHh--cCEEEEecCC------------HHHHHHHHHHHHHHHhhc----CCeeEEEEeCcHHHHHHHhcCCccHHHHH
Confidence 76553 4566666543 112344555565555532 156789999999987531 21 11
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeeccCCC--------CCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEec
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHEDIYS--------SMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNK 226 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~--------~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~ 226 (260)
..+..+++.|+.++.+.++++++..|..... ......+-..+.|.++..+.++.-.. .--.++|.+.
T Consensus 143 ~~l~~~~~~L~~la~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~-----~~r~~~i~k~ 217 (235)
T cd01123 143 QHLAKLLRTLKRLADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRG-----EERIAKIVDS 217 (235)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCC-----CceEEEEeeC
Confidence 3457788888888888999999888743211 11112345677888887777764431 1235777664
Q ss_pred CCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 227 GTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
+.. ...++.|.+.|+||+
T Consensus 218 ~~~--------~~~~~~f~It~~Gi~ 235 (235)
T cd01123 218 PHL--------PEGEAVFAITEEGIR 235 (235)
T ss_pred CCC--------CCceEEEEEeCCccC
Confidence 321 135789999998874
No 19
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.50 E-value=2e-05 Score=67.17 Aligned_cols=192 Identities=11% Similarity=0.126 Sum_probs=121.4
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEecc-CchhHHHHHHHHhccccccccCCceEEeecccccCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN-PFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCP 102 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~-~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~ 102 (260)
|.|++++|+...|+.=+-+..+++.+..+.+.+ |+++++.. +.+.+...++.. +... .+++.+++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~--v~yi~~e~~~~~rl~~~~~~~---~~~~--~~~i~~~~~~~---- 78 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKK--VVYIDTEGLSPERFKQIAEDR---PERA--LSNFIVFEVFD---- 78 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe--EEEEECCCCCHHHHHHHHHhC---hHHH--hcCEEEEECCC----
Confidence 479999999999999999999999988876655 99999986 666666666543 1111 35677776632
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-CCC----hHHHHHHHHHHHHhhcccCCeEEE
Q 024921 103 DVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-NGG----SDYVLDFLHYCHALTSEFDCSLIT 177 (260)
Q Consensus 103 ~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g~~----~~~v~~fi~~l~~~~~~~~~~lv~ 177 (260)
...+..+...+.+.+.. ....+||||.++.+.... ... ..++..++..++.++++.++++++
T Consensus 79 --------~~~~~~~~~~l~~~~~~-----~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~ 145 (209)
T TIGR02237 79 --------FDEQGVAIQKTSKFIDR-----DSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVI 145 (209)
T ss_pred --------HHHHHHHHHHHHHHHhh-----cCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11122334444444432 145689999999986532 111 225566777788888888888888
Q ss_pred EeeccCC-CC-CChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 178 LNHEDIY-SS-MERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 178 l~h~~~~-~~-~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
..+.... .+ .....--..+.|.||.+|.++-.. |. =.+.|.+.+.. ...+++-|.+.++|++
T Consensus 146 t~~~~~~~~~~~~~~~gg~~~~~~~d~vi~l~~~~-~~-----r~~~i~k~~~~-------~~~~~~~f~It~~Gi~ 209 (209)
T TIGR02237 146 TNQVYTDVNNGTLRPLGGHLLEHWSKVILRLEKFR-GR-----RLATLEKHRSR-------PEGESVYFRITDDGIE 209 (209)
T ss_pred EcccEEecCCCCCcCCCcchhheeeeEEEEEEecC-CE-----EEEEEEECCCC-------CCCCeEEEEEeCCccC
Confidence 8774321 11 000111234799999999999762 31 23334333221 1246788999988874
No 20
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=98.49 E-value=3.8e-05 Score=70.11 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=136.7
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEecc--CchhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFAN--PFSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~--~~~hy~~~~~KlG~ 80 (260)
+-||.+|| + ..|.|+++.|....++.=+-+.++|..++... +...+|+++++.. +.+.....++++|.
T Consensus 89 ~~lD~~l~--G----Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~ 162 (317)
T PRK04301 89 KELDELLG--G----GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGL 162 (317)
T ss_pred HHHHHHhc--C----CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCC
Confidence 44666663 1 12479999999999999999999998887642 2224699999998 46788899999999
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-cCC--C----
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-ANG--G---- 153 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~g~--~---- 153 (260)
+.....+ ++.+++.... .....+.+.+...+.+. ....+||||.++.++.. +.. .
T Consensus 163 ~~~~~l~--~i~~~~~~~~------------~~~~~~~~~l~~~i~~~----~~~~lvVIDSisa~~~~~~~~~~~~~~r 224 (317)
T PRK04301 163 DPDEVLD--NIHVARAYNS------------DHQMLLAEKAEELIKEG----ENIKLVIVDSLTAHFRAEYVGRGNLAER 224 (317)
T ss_pred ChHhhhc--cEEEEeCCCH------------HHHHHHHHHHHHHHhcc----CceeEEEEECchHHhhhhccCCccHHHH
Confidence 8765433 4666654321 11223344455544431 23458999999999754 111 1
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCC
Q 024921 154 SDYVLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGT 228 (260)
Q Consensus 154 ~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~ 228 (260)
...+..|++.|+.++.+.++++|+..+.... .++.....-..+.|.++..|.++-...+. -.++|.+.+.
T Consensus 225 ~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~~~~rl~l~k~~~~~-----R~~~v~k~~~ 299 (317)
T PRK04301 225 QQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRKSKGNK-----RIARLVDSPH 299 (317)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCccccCCcchHhHhheeEEEEEEecCCCc-----eEEEEEeCCC
Confidence 2235677888888888999998888873221 11122234456899999999999643321 2566666542
Q ss_pred CCCCCCCCCceeeEeEEEecCcEE
Q 024921 229 SHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 229 ~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
. .+.++.|.+.++||.
T Consensus 300 ~--------~~~~~~f~I~~~Gi~ 315 (317)
T PRK04301 300 L--------PEGEAVFRITEEGIR 315 (317)
T ss_pred C--------CCceEEEEEeCCccc
Confidence 1 235678999988875
No 21
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.48 E-value=4.2e-06 Score=69.67 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=110.4
Q ss_pred EEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCCCCCC
Q 024921 29 VLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGK 108 (260)
Q Consensus 29 ~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~ 108 (260)
++|....|+.-+-|..+|+...++.+.+ |+++++..+.+.+..-++.+|+++..+.+.|.+.++|......++. +
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~--v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~-~-- 76 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEP--GLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPA-E-- 76 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchh-h--
Confidence 6888888999999999999999987766 9999999999999999999999999998899999998776433321 0
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC--ChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCC
Q 024921 109 SSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG--GSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSS 186 (260)
Q Consensus 109 ~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~--~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~ 186 (260)
......+...+...+... ++.++|||.++.++.. .. ...++.+++..++ +.++++++..|.....+
T Consensus 77 --~~~~~~~~~~i~~~~~~~-----~~~~lviD~~~~~~~~-~~~~~~~~i~~l~~~l~----~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 77 --SSLRLELIQRLKDAIEEF-----KAKRVVIDSVSGLLLM-EQSTARLEIRRLLFALK----RFGVTTLLTSEQSGLEG 144 (187)
T ss_pred --hhhhHHHHHHHHHHHHHh-----CCCEEEEeCcHHHhhc-ChHHHHHHHHHHHHHHH----HCCCEEEEEeccccCCC
Confidence 000013445555544432 4668999999998742 11 1122233443332 33556777776543221
Q ss_pred CChhHHHHHcchhcceEEEeccCC
Q 024921 187 MERPTLILQMEYLADILIKAEPLS 210 (260)
Q Consensus 187 ~e~~~l~~~L~h~a~~~i~l~pL~ 210 (260)
...-...+.|.||.+|.++.-.
T Consensus 145 --~~~~~~~~~~~aD~ii~l~~~~ 166 (187)
T cd01124 145 --TGFGGGDVEYLVDGVIRLRLDE 166 (187)
T ss_pred --cccCcCceeEeeeEEEEEEEEc
Confidence 1112355889999988887553
No 22
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.46 E-value=3.7e-05 Score=66.38 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=124.1
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEec-cCchhHHHHHHHHhccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFA-NPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~-~~~~hy~~~~~KlG~nL~~~~ 86 (260)
-||..|+ +. .|.|++++|....++.=+-+.++++.+.++.+.+ |+++++. -+.+.+...++. ++....
T Consensus 11 ~lD~~l~--GG----i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~--v~yi~~e~~~~~r~~~~~~~---~~~~~~ 79 (225)
T PRK09361 11 MLDELLG--GG----FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKK--VIYIDTEGLSPERFKQIAGE---DFEELL 79 (225)
T ss_pred HHHHHhc--CC----CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEECCCCCHHHHHHHHhh---ChHhHh
Confidence 4778773 22 2479999999999999999999999998877655 9999998 233555555443 333322
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--C-CC----hHHHHH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--N-GG----SDYVLD 159 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g-~~----~~~v~~ 159 (260)
+++.+++... ...+..+.+.+.+.++ ....+||||.++.+.... + .. ..++.+
T Consensus 80 --~~~~~~~~~~------------~~~~~~~i~~~~~~~~------~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~ 139 (225)
T PRK09361 80 --SNIIIFEPSS------------FEEQSEAIRKAEKLAK------ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGR 139 (225)
T ss_pred --hCeEEEeCCC------------HHHHHHHHHHHHHHHH------hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHH
Confidence 3455555432 0112222233333232 145689999999987431 1 11 234566
Q ss_pred HHHHHHHhhcccCCeEEEEeeccCC-CC-CChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCC
Q 024921 160 FLHYCHALTSEFDCSLITLNHEDIY-SS-MERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGN 237 (260)
Q Consensus 160 fi~~l~~~~~~~~~~lv~l~h~~~~-~~-~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~ 237 (260)
+++.|+.++.+.++++++.+|.... .. .........+.|.||.+|.++. ..|.- -.+.+.+.+. . .
T Consensus 140 ~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ii~l~~-~~~~~----r~~~i~k~~~-~------~ 207 (225)
T PRK09361 140 QLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKTILRLEK-FRNGK----RRATLEKHRS-R------P 207 (225)
T ss_pred HHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccEEEEEEE-ccCCe----EEEEEEECCC-C------C
Confidence 6777888888888888888874321 11 0111223458999999999988 32321 1223333221 1 2
Q ss_pred ceeeEeEEEecCcEEE
Q 024921 238 KIHNFHYKVKENTVEY 253 (260)
Q Consensus 238 ~~~e~lY~v~D~~Vk~ 253 (260)
...++.|.+.++||++
T Consensus 208 ~~~~~~f~It~~Gi~~ 223 (225)
T PRK09361 208 EGESAEFRITDRGIEI 223 (225)
T ss_pred CCCeEEEEEeCCcEec
Confidence 3466789999999874
No 23
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.39 E-value=3.7e-05 Score=73.67 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=125.2
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
++|++++|....|+.=+.|+.++.....+.+.+ |+++++.++..-...-++++|++.. ++.+++-
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k--vlYvs~EEs~~qi~~ra~rlg~~~~------~l~~~~e------- 156 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK--VLYVSGEESLQQIKMRAIRLGLPEP------NLYVLSE------- 156 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc--EEEEECcCCHHHHHHHHHHcCCChH------HeEEcCC-------
Confidence 479999999999999999999999988776555 9999999998888877888988754 2333221
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH----cCCChHHHHHHHHHHHHhhcccCCeEEEEe
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA----ANGGSDYVLDFLHYCHALTSEFDCSLITLN 179 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~----~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~ 179 (260)
..+..+... +++. +..+||||.+..+... ...+..++..++..|..++++.+.++++..
T Consensus 157 --------~~~~~I~~~----i~~~-----~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 157 --------TNWEQICAN----IEEE-----NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred --------CCHHHHHHH----HHhc-----CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 123334333 3321 4568999999998521 123345677888888888888888888888
Q ss_pred eccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEE-Eee
Q 024921 180 HEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVE-YFY 255 (260)
Q Consensus 180 h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk-~F~ 255 (260)
|....... . -...+.|++|.+|.++.=.. .....|++.+.... . ......|.+.|+|+. +..
T Consensus 220 hvtkeg~~--a-G~~~le~lvD~VI~Le~~~~----~~~R~L~v~K~R~g-~------~~e~~~f~it~~Gl~~v~~ 282 (454)
T TIGR00416 220 HVTKEGSI--A-GPKVLEHMVDTVLYFEGDRD----SRFRILRSVKNRFG-A------TNEIGIFEMTEQGLREVLN 282 (454)
T ss_pred ccccCCcc--C-CcccEeeeceEEEEEeccCC----CcEEEEEEecCCCC-C------CCcEEEEEEecCCceecCC
Confidence 85432110 0 12358999999999986221 23346666554321 1 124467888888886 443
No 24
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.36 E-value=4.8e-05 Score=72.75 Aligned_cols=193 Identities=18% Similarity=0.151 Sum_probs=126.4
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
=||..|| +.- ++|++++|....|+.=+.|+.++.....+.+.+ |+++++..+.+-...-++++|++...
T Consensus 68 ~LD~~Lg--GGi----~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~--vlYvs~Ees~~qi~~ra~rlg~~~~~--- 136 (446)
T PRK11823 68 ELDRVLG--GGL----VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGK--VLYVSGEESASQIKLRAERLGLPSDN--- 136 (446)
T ss_pred HHHHHhc--CCc----cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCe--EEEEEccccHHHHHHHHHHcCCChhc---
Confidence 3666663 122 469999999999999999999999988765555 99999999998888778999998653
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c---CCChHHHHHHHHH
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A---NGGSDYVLDFLHY 163 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~---g~~~~~v~~fi~~ 163 (260)
+.++ . +..+..+.+.+++ .+..+||||.+..+... . ..+..++..++..
T Consensus 137 ---l~~~---~------------e~~l~~i~~~i~~---------~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~ 189 (446)
T PRK11823 137 ---LYLL---A------------ETNLEAILATIEE---------EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAE 189 (446)
T ss_pred ---EEEe---C------------CCCHHHHHHHHHh---------hCCCEEEEechhhhccccccCCCCCHHHHHHHHHH
Confidence 2211 1 1224445444422 24568999999998632 1 1234567778888
Q ss_pred HHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEe
Q 024921 164 CHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFH 243 (260)
Q Consensus 164 l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~l 243 (260)
|..++++.++++++..|....... .-...+.|.+|.+|.++.-. |. -.=.|++.+... .+ ......
T Consensus 190 L~~~ak~~~itvilv~hvtk~~~~---ag~~~lehlvD~Vi~le~~~-~~---~~R~l~i~K~R~-g~------~~e~~~ 255 (446)
T PRK11823 190 LMRLAKQRGIAVFLVGHVTKEGAI---AGPRVLEHMVDTVLYFEGDR-HS---RYRILRAVKNRF-GA------TNEIGV 255 (446)
T ss_pred HHHHHHHcCCEEEEEeeccCCCCc---CCcchhhhhCeEEEEEEcCC-CC---ceEEEEEccCCC-CC------CCceEE
Confidence 888888888888888885432110 01235899999999887411 11 111244443321 11 113455
Q ss_pred EEEecCcEE
Q 024921 244 YKVKENTVE 252 (260)
Q Consensus 244 Y~v~D~~Vk 252 (260)
|.+.++|++
T Consensus 256 f~it~~Gi~ 264 (446)
T PRK11823 256 FEMTEQGLR 264 (446)
T ss_pred EEEcCCCce
Confidence 888888888
No 25
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.35 E-value=0.00011 Score=68.64 Aligned_cols=194 Identities=18% Similarity=0.134 Sum_probs=127.3
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||..||= . .++|++++|....|+.=+.|+.++.....+.+.+ |+++++..+.+-.+.-++++|++...
T Consensus 70 eLD~vLgG--G----i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~--VlYvs~EEs~~qi~~Ra~rlg~~~~~--- 138 (372)
T cd01121 70 ELDRVLGG--G----LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK--VLYVSGEESPEQIKLRADRLGISTEN--- 138 (372)
T ss_pred HHHHhhcC--C----ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCe--EEEEECCcCHHHHHHHHHHcCCCccc---
Confidence 35666641 1 2469999999999999999999999988876555 99999998888777778888887532
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c---CCChHHHHHHHHH
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A---NGGSDYVLDFLHY 163 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~---g~~~~~v~~fi~~ 163 (260)
+.+++ ...+..+.+.+.+ .+..+||||.+..+... . ..+..++..++..
T Consensus 139 ---l~l~~---------------e~~le~I~~~i~~---------~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~ 191 (372)
T cd01121 139 ---LYLLA---------------ETNLEDILASIEE---------LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAE 191 (372)
T ss_pred ---EEEEc---------------cCcHHHHHHHHHh---------cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHH
Confidence 22221 1124445444422 24668999999988521 1 1234567778888
Q ss_pred HHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEe
Q 024921 164 CHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFH 243 (260)
Q Consensus 164 l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~l 243 (260)
|..++++.+.++++..|..-... ..-...+.|++|.+|.++.=.. ...=.|++.+.... . ......
T Consensus 192 L~~lak~~~itvilvghvtk~g~---~aG~~~leh~vD~Vi~le~~~~----~~~R~Lri~KnR~g-~------~~ei~~ 257 (372)
T cd01121 192 LMRFAKERNIPIFIVGHVTKEGS---IAGPKVLEHMVDTVLYFEGDRH----SEYRILRSVKNRFG-S------TNELGV 257 (372)
T ss_pred HHHHHHHcCCeEEEEeeccCCCc---ccCcccchhhceEEEEEEcCCC----CcEEEEEEEeCCCC-C------CCCEEE
Confidence 88888888888888888542111 0113469999999999874221 12223555443311 1 113466
Q ss_pred EEEecCcEEE
Q 024921 244 YKVKENTVEY 253 (260)
Q Consensus 244 Y~v~D~~Vk~ 253 (260)
|.+.|+|++.
T Consensus 258 F~i~~~Gl~~ 267 (372)
T cd01121 258 FEMRENGLRE 267 (372)
T ss_pred EEECCCCeEE
Confidence 8888888884
No 26
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=98.35 E-value=7.8e-05 Score=68.13 Aligned_cols=207 Identities=10% Similarity=0.097 Sum_probs=134.0
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcC----CCCCCeEEEEEeccC--chhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLS----PTSSNVIIFVAFANP--FSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~----~~~~~~Vvlvs~~~~--~~hy~~~~~KlG~n 81 (260)
-||..|| +.. |.|+++.|....++.=+-|.+++.-++.. ++...+|+++++..+ .+.....++++|+|
T Consensus 84 ~LD~lLg--GGi----~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d 157 (313)
T TIGR02238 84 ALDGILG--GGI----ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVD 157 (313)
T ss_pred HHHHHhC--CCC----cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 4777775 333 36999999999999999999988765542 222345999999996 67888899999999
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-CC-Ch----
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-NG-GS---- 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g~-~~---- 154 (260)
...+.+ ++.+.+..+. ..+-.+...+...+.+ ....+||||.++.+... . |- ..
T Consensus 158 ~~~~l~--~i~~~~~~~~------------e~~~~~l~~l~~~i~~-----~~~~LvVIDSisal~r~~~~~~g~~~~r~ 218 (313)
T TIGR02238 158 PDAVLD--NILYARAYTS------------EHQMELLDYLAAKFSE-----EPFRLLIVDSIMALFRVDFSGRGELSERQ 218 (313)
T ss_pred hHHhcC--cEEEecCCCH------------HHHHHHHHHHHHHhhc-----cCCCEEEEEcchHhhhhhccCccchHHHH
Confidence 776543 3444444331 1112222333333332 24568999999998642 1 11 11
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeeccCC--------CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEec
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHEDIY--------SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNK 226 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~--------~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~ 226 (260)
..+..+++.|+.++.+.++++|+..|.... .+......-..+.|.++..|.++-...+. =.++|...
T Consensus 219 ~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~-----R~~~~~~s 293 (313)
T TIGR02238 219 QKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEE-----RVAKLYDS 293 (313)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhheeEEEEEEecCCCe-----EEEEEeeC
Confidence 125678888888888999999988874321 11122346678999999999999554321 13444433
Q ss_pred CCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 227 GTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
+. ..+.+..|.+.++||.
T Consensus 294 p~--------~p~~~~~f~i~~~Gi~ 311 (313)
T TIGR02238 294 PD--------MPEAEASFQITEGGIA 311 (313)
T ss_pred CC--------CCCeEEEEEEeCCccc
Confidence 22 1346788999998875
No 27
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.29 E-value=4.2e-05 Score=65.82 Aligned_cols=194 Identities=11% Similarity=0.057 Sum_probs=124.2
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCC----CCCeEEEEEeccC--chhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPT----SSNVIIFVAFANP--FSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~----~~~~Vvlvs~~~~--~~hy~~~~~KlG~ 80 (260)
+-||.+|+ +. .|.|+++.|....++-=+.|..++....++.+ .+.+|+++++..+ ..+....+++.+.
T Consensus 6 ~~lD~~l~--GG----~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 6 KALDELLG--GG----IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred HHHHHHhC--CC----CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 34777773 11 35799999999989988999999999887665 1244999999876 4567777777777
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-CCC------
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-NGG------ 153 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g~~------ 153 (260)
+..... .++.+++..+ ...+...+...++... .....+||||.++.+.+.. ...
T Consensus 80 ~~~~~~--~~i~~~~~~~---------------~~~~~~~l~~~~~~~~--~~~~~lvVIDsis~l~~~~~~~~~~~~~~ 140 (226)
T cd01393 80 DPEEVL--DNIYVARPYN---------------GEQQLEIVEELERIMS--SGRVDLVVVDSVAALFRKEFIGRGMLAER 140 (226)
T ss_pred chhhhh--ccEEEEeCCC---------------HHHHHHHHHHHHHHhh--cCCeeEEEEcCcchhhhhhhcCCchHHHH
Confidence 754432 3566666543 1222222222221111 1245689999999997642 111
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEeeccCCC-----CCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecC
Q 024921 154 SDYVLDFLHYCHALTSEFDCSLITLNHEDIYS-----SMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKG 227 (260)
Q Consensus 154 ~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~-----~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~ 227 (260)
...+..+++.|+.++.+.++++|++.|..... .......-..+.|.++..|.++.-... ....-.+++.+.+
T Consensus 141 ~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~~~--~~~~r~~~~~k~~ 217 (226)
T cd01393 141 ARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRGI--IGERRIAKVVKSP 217 (226)
T ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEEEEeeecccccCCCccccCchhhhCcccEEEEEEecCCc--cCcEEEEEEEeCC
Confidence 13456778888888889999999998854211 112234557899999999999865532 1123345555544
No 28
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.28 E-value=9.9e-05 Score=63.34 Aligned_cols=201 Identities=12% Similarity=0.122 Sum_probs=119.0
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCch-hHHHHHHHHhccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS-HYDRILRKLGCNLVTQR 86 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~-hy~~~~~KlG~nL~~~~ 86 (260)
-||..|+ +. .|.|++++|....++.=+.+..+++....+.+.+ |+++++...+. .++....+ .....
T Consensus 7 ~LD~~l~--GG----i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~--v~yi~~e~~~~~~~~~~~~~---~~~~~- 74 (218)
T cd01394 7 GLDELLG--GG----VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKK--VAYIDTEGLSSERFRQIAGD---RPERA- 74 (218)
T ss_pred HHHHHhc--CC----ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCe--EEEEECCCCCHHHHHHHHhH---ChHhh-
Confidence 3677773 11 2479999999999999999999999988876655 99998865543 34433322 11111
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-CCC------hHHHHH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-NGG------SDYVLD 159 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g~~------~~~v~~ 159 (260)
..++.++|.... ..+......+...++ .+..+||||.++.+...- ... ..++..
T Consensus 75 -~~~~~~~~~~~~------------~~~~~~~~~~~~~~~------~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~ 135 (218)
T cd01394 75 -ASSIIVFEPMDF------------NEQGRAIQETETFAD------EKVDLVVVDSATALYRLELGDDDTTIKNYRELAK 135 (218)
T ss_pred -hcCEEEEeCCCH------------HHHHHHHHHHHHHHh------cCCcEEEEechHHhhhHHhcCccchHHHHHHHHH
Confidence 345666554320 011112222332222 135689999999996421 111 125567
Q ss_pred HHHHHHHhhcccCCeEEEEeeccCCC--CCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCC
Q 024921 160 FLHYCHALTSEFDCSLITLNHEDIYS--SMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGN 237 (260)
Q Consensus 160 fi~~l~~~~~~~~~~lv~l~h~~~~~--~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~ 237 (260)
+++.|+.++.+.++++|+.++..... .......-..+.|.||.+|.++-...+. + ...+.+.+. ..
T Consensus 136 ~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~~~~~~~-r----~~~~~~~~~-------~~ 203 (218)
T cd01394 136 QLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKLRVGT-R----RAVLEKHRF-------RP 203 (218)
T ss_pred HHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEEEEEEEcCCCe-E----EEEEeeCCC-------CC
Confidence 77778888888889998888853211 1111123345799999999998665221 1 011222111 11
Q ss_pred ceeeEeEEEecCcE
Q 024921 238 KIHNFHYKVKENTV 251 (260)
Q Consensus 238 ~~~e~lY~v~D~~V 251 (260)
..+++.|.+.++|+
T Consensus 204 ~~~~~~f~It~~Gi 217 (218)
T cd01394 204 EGSSVYFRITDKGI 217 (218)
T ss_pred CCceEEEEEeCCcc
Confidence 34668899988876
No 29
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=98.27 E-value=0.00017 Score=65.47 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=134.1
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcC----CCCCCeEEEEEecc--CchhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLS----PTSSNVIIFVAFAN--PFSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~----~~~~~~Vvlvs~~~--~~~hy~~~~~KlG~ 80 (260)
+-++++|| + ..|.+++++|....++-=+-+..++..++.. ++...+|+++++.. +.+.....+++.|+
T Consensus 82 ~~lD~~l~--G----Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl 155 (310)
T TIGR02236 82 KELDELLG--G----GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGL 155 (310)
T ss_pred HHHHHHhc--C----CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 44677775 1 1247999999999999999999999887653 22223699999998 45677778888898
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-cCC--Ch---
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-ANG--GS--- 154 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~g~--~~--- 154 (260)
+..... .++.++..+.. ...-.+.+.+.+.+.+.. ....+||||.++.+... +.. ..
T Consensus 156 ~~~~~~--~~i~i~~~~~~------------~~~~~lld~l~~~i~~~~---~~~~lVVIDSisa~~r~e~~~~~~~~~r 218 (310)
T TIGR02236 156 DPDEVL--KNIYVARAYNS------------NHQMLLVEKAEDLIKELN---NPVKLLIVDSLTSHFRAEYVGRGALAER 218 (310)
T ss_pred CHHHHh--hceEEEecCCH------------HHHHHHHHHHHHHHHhcC---CCceEEEEecchHhhhHhhcCchhHHHH
Confidence 865543 34555555331 111223344555554331 12458999999998643 111 11
Q ss_pred -HHHHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCC
Q 024921 155 -DYVLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGT 228 (260)
Q Consensus 155 -~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~ 228 (260)
..+..+++.|..++.+.++++|+..+.... .+......-..+.|.++..|.++-...+. -.++|.+.+.
T Consensus 219 ~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~~~~rl~l~~~~~~~-----R~~~~~k~~~ 293 (310)
T TIGR02236 219 QQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHAATFRVYLRKGKGDK-----RIARLVDSPH 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhheeEEEEEEecCCCe-----EEEEEEECCC
Confidence 124567777887788888999888874211 11222346788999999999999643221 2566665432
Q ss_pred CCCCCCCCCceeeEeEEEecCcEE
Q 024921 229 SHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 229 ~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
. .+.+..|.+.++|++
T Consensus 294 ~--------~~~~~~f~i~~~Gi~ 309 (310)
T TIGR02236 294 L--------PEGEAVFRITEKGIE 309 (310)
T ss_pred C--------CCeeEEEEEeCCCcc
Confidence 1 224556999888874
No 30
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.19 E-value=0.00019 Score=66.45 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=132.3
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcC----CCCCCeEEEEEecc--CchhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLS----PTSSNVIIFVAFAN--PFSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~----~~~~~~Vvlvs~~~--~~~hy~~~~~KlG~n 81 (260)
-||..|| +. .|.|+++.|...-++.=+-|-+++.-+... ++...+|+++++.. +.+.....++++|++
T Consensus 114 ~LD~lLg--GG----i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d 187 (344)
T PLN03187 114 ALDELLG--GG----IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (344)
T ss_pred hHHhhcC--CC----CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 4677775 22 247999999999999999999999654432 33234699999999 577788899999999
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-C---CC--h
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-N---GG--S 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g---~~--~ 154 (260)
...+.+ ++.+.+..+. ..+..+...+...+.+ ....+||||.++.++.. + | .. .
T Consensus 188 ~~~~l~--~I~~~~~~~~------------e~~~~~l~~l~~~i~~-----~~~~LvVIDSital~r~~~~~rg~l~~rq 248 (344)
T PLN03187 188 ADAVLD--NIIYARAYTY------------EHQYNLLLGLAAKMAE-----EPFRLLIVDSVIALFRVDFTGRGELAERQ 248 (344)
T ss_pred hhhhcC--eEEEecCCCH------------HHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHhhhccccCccchHHHH
Confidence 766533 3444444321 1111222333333332 13568999999998643 1 1 11 1
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeecc--CC-----CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecC
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHED--IY-----SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKG 227 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~--~~-----~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~ 227 (260)
..+..|++.|+.++.+.++++|+.++.. .. .+......-..+.|.++..+.++.-. | +. =.++|...+
T Consensus 249 ~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~~~~Rl~l~k~~-~---~~-R~~~v~ksp 323 (344)
T PLN03187 249 QKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLMLRKGK-G---EQ-RVCKVFDAP 323 (344)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhheeeeEEEEEEcCC-C---Ce-EEEEEEECC
Confidence 2367888888888888999998888742 11 11112235678999999999998543 2 11 135555443
Q ss_pred CCCCCCCCCCceeeEeEEEecCcEE
Q 024921 228 TSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 228 ~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
. . .+.+..|.+.++||+
T Consensus 324 ~-l-------p~~~~~f~It~~GI~ 340 (344)
T PLN03187 324 N-L-------PEAEAEFQITSGGIM 340 (344)
T ss_pred C-C-------CCceEEEEEeCCCcc
Confidence 2 1 235577999998875
No 31
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.11 E-value=0.00015 Score=64.23 Aligned_cols=169 Identities=14% Similarity=0.187 Sum_probs=109.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHHHHH--Hhccccc----------------
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRILRK--LGCNLVT---------------- 84 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~~~K--lG~nL~~---------------- 84 (260)
+.|.+++|....|+.=+.+..++..++.++ +.+ |+++|+..+......-+.. .|+++..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~--vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVR--VGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCce--EEEEEcccCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 578999999999999999999999888766 444 9999998766544433322 2555532
Q ss_pred --cccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CCC-hHHHHH
Q 024921 85 --QRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NGG-SDYVLD 159 (260)
Q Consensus 85 --~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~~-~~~v~~ 159 (260)
+.+.+++.++|... ...+..+...|+..+... +..+||||.+..+.... ..+ ...+..
T Consensus 106 ~~~~~~~~l~i~d~~~------------~~~~~~i~~~i~~~~~~~-----~~~~vvID~l~~l~~~~~~~~~~~~~~~~ 168 (271)
T cd01122 106 DEFEGTGRLFMYDSFG------------EYSMDSVLEKVRYMAVSH-----GIQHIIIDNLSIMVSDERASGDERKALDE 168 (271)
T ss_pred HHhcCCCcEEEEcCCC------------ccCHHHHHHHHHHHHhcC-----CceEEEECCHHHHhccCCCchhHHHHHHH
Confidence 11223444443221 113556666666655432 45689999999997421 111 223567
Q ss_pred HHHHHHHhhcccCCeEEEEeeccCCC-C--------CChhHH--HHHcchhcceEEEeccCCC
Q 024921 160 FLHYCHALTSEFDCSLITLNHEDIYS-S--------MERPTL--ILQMEYLADILIKAEPLST 211 (260)
Q Consensus 160 fi~~l~~~~~~~~~~lv~l~h~~~~~-~--------~e~~~l--~~~L~h~a~~~i~l~pL~T 211 (260)
+++.|+.++.+.++++++++|..-.. + .....+ ...+.+.||.+|.++...-
T Consensus 169 ~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~ 231 (271)
T cd01122 169 IMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ 231 (271)
T ss_pred HHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCc
Confidence 78888888889999999999854221 0 000111 3367899999999987653
No 32
>PRK09354 recA recombinase A; Provisional
Probab=98.06 E-value=0.0001 Score=68.16 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=118.0
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. +. .|.|+++.|....++-=+-|-+|++.++.+.+.+ ++++.+.++++- ..++++|+|+..+
T Consensus 46 ~~LD~~LG~-GG----ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~--~~yId~E~s~~~--~~a~~lGvdld~l- 115 (349)
T PRK09354 46 LALDIALGI-GG----LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGT--AAFIDAEHALDP--VYAKKLGVDIDNL- 115 (349)
T ss_pred HHHHHHhcC-CC----CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc--EEEECCccchHH--HHHHHcCCCHHHe-
Confidence 468888874 22 2479999999999999999999999999988766 999999998774 6789999998653
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH--c---------CCChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA--A---------NGGSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~--~---------g~~~~ 155 (260)
.+. +++ ...+....+...++. ....+||||.++.|... + |....
T Consensus 116 -----li~-----------qp~----~~Eq~l~i~~~li~s-----~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar 170 (349)
T PRK09354 116 -----LVS-----------QPD----TGEQALEIADTLVRS-----GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQAR 170 (349)
T ss_pred -----EEe-----------cCC----CHHHHHHHHHHHhhc-----CCCCEEEEeChhhhcchhhhcCCccccchhHHHH
Confidence 211 111 123344444443332 24668999999999631 0 11223
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccC-----CCCCChhHHHHHcchhcceEEEeccCC---CcCccceeEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDI-----YSSMERPTLILQMEYLADILIKAEPLS---TGLATDVHGQ 220 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~-----~~~~e~~~l~~~L~h~a~~~i~l~pL~---TG~a~DVtG~ 220 (260)
.+..+++.|...+.+.++++|+..+... +.+.+...=-+.|.|.|.+.+.++... .| .+++|.
T Consensus 171 ~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~g~pe~~~GG~aL~~~ss~rl~lrr~~~iK~~--~~~~G~ 241 (349)
T PRK09354 171 LMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDG--DEVIGN 241 (349)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEEeeeeccccccCCCCcCCCchhhHhhheeeeEEecccccccC--Cceecc
Confidence 3345667777777888888888776321 112222223456999999999998643 33 245555
No 33
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=98.03 E-value=0.0011 Score=61.47 Aligned_cols=207 Identities=12% Similarity=0.089 Sum_probs=130.1
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcC----CCCCCeEEEEEeccC--chhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLS----PTSSNVIIFVAFANP--FSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~----~~~~~~Vvlvs~~~~--~~hy~~~~~KlG~n 81 (260)
-||..|| + ..|.++++.|....++.-+=|.+++..++.. ++...+|+++++..+ .+....+++++|+|
T Consensus 111 ~LD~lL~--G----G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~ 184 (342)
T PLN03186 111 ELDKILE--G----GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLN 184 (342)
T ss_pred HHHHhhc--C----CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCC
Confidence 3666664 2 2346999999999899888888887766542 222236999999994 56678889999998
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-CC-C----h
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-NG-G----S 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g~-~----~ 154 (260)
.....+ ++.+.+... ...+..+...+...+.. ....+||||.++.+... . |- . .
T Consensus 185 ~~~~l~--~i~~~~~~~------------~e~~~~ll~~~~~~~~~-----~~~~LIVIDSI~alfr~~~~~~g~l~~r~ 245 (342)
T PLN03186 185 GADVLE--NVAYARAYN------------TDHQSELLLEAASMMAE-----TRFALMIVDSATALYRTEFSGRGELSARQ 245 (342)
T ss_pred hhhhcc--ceEEEecCC------------HHHHHHHHHHHHHHhhc-----cCCCEEEEeCcHHHHHHHhcCCccHHHHH
Confidence 765432 344433322 01111222222222221 24668999999999753 1 21 1 1
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeecc--CCC-----CCC-hhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEec
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHED--IYS-----SME-RPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNK 226 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~--~~~-----~~e-~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~ 226 (260)
..+..|++.|+.++.+.++++|+..|.. ... +.. -..+-..+.|.++..|.++--.. -.-.++|.+.
T Consensus 246 ~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~~-----~~R~~~v~ks 320 (342)
T PLN03186 246 MHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRG-----ENRICKVISS 320 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecCC-----CeEEEEEEEC
Confidence 2246788888888888999999888852 211 111 23477799999999999985321 1124555544
Q ss_pred CCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 227 GTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
+. . .+.+-.|.+.++|++
T Consensus 321 p~-~-------p~~e~~F~I~~~Gi~ 338 (342)
T PLN03186 321 PC-L-------PEAEARFSISSEGVT 338 (342)
T ss_pred CC-C-------CCeEEEEEEECCcee
Confidence 32 1 235688999998875
No 34
>PTZ00035 Rad51 protein; Provisional
Probab=97.98 E-value=0.0016 Score=60.17 Aligned_cols=207 Identities=11% Similarity=0.118 Sum_probs=130.1
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcC----CCCCCeEEEEEeccC--chhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLS----PTSSNVIIFVAFANP--FSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~----~~~~~~Vvlvs~~~~--~~hy~~~~~KlG~n 81 (260)
-||..|| +. .|.|+++.|....++.=+=|.+++...... ++...+|+++++..+ .+....++++.|++
T Consensus 106 ~LD~lLg--GG----i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~ 179 (337)
T PTZ00035 106 QLDKLLG--GG----IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLD 179 (337)
T ss_pred HHHHHhC--CC----CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCC
Confidence 4677774 22 247999999999999999999888766552 222335999999885 55778889999988
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-CC-C----h
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-NG-G----S 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g~-~----~ 154 (260)
.....+ ++.|....+ ...+..+...+.+.+.. ....+||||.++.++.. + |- . .
T Consensus 180 ~~~~l~--nI~~~~~~~------------~e~~~~~l~~~~~~l~~-----~~~~lvVIDSital~r~~~~~~~~~~~r~ 240 (337)
T PTZ00035 180 PEDVLD--NIAYARAYN------------HEHQMQLLSQAAAKMAE-----ERFALLIVDSATALFRVDYSGRGELAERQ 240 (337)
T ss_pred hHhHhh--ceEEEccCC------------HHHHHHHHHHHHHHhhc-----cCccEEEEECcHHhhhhhccCcccHHHHH
Confidence 765433 344443322 01111222222222221 24568999999998743 1 11 1 1
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeeccCC--------CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEec
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHEDIY--------SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNK 226 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~--------~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~ 226 (260)
..+..|++.|+.++.+.++++|+..+.... .+..-...-..+.|.++..|.++--..+. =.++|.+.
T Consensus 241 ~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~-----R~~~i~ks 315 (337)
T PTZ00035 241 QHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQ-----RICKIYDS 315 (337)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecCCCe-----eEEEEEEC
Confidence 225678888888888888998888763221 11112345678999999999998543221 13566544
Q ss_pred CCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 227 GTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
+. . .+.+..|.+.++|+.
T Consensus 316 p~-~-------p~~~~~f~It~~Gi~ 333 (337)
T PTZ00035 316 PN-L-------PESEAVFAISEGGII 333 (337)
T ss_pred CC-C-------CCeeEEEEEeCCccc
Confidence 32 1 235578999998875
No 35
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.98 E-value=0.00016 Score=66.39 Aligned_cols=177 Identities=15% Similarity=0.177 Sum_probs=117.4
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. .. .|.|+++.|....++.=+-|.++++..+.+.+.+ |+++++.++++ ...++++|+|+...
T Consensus 41 ~~LD~~Lg~-GG----lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~--~vyId~E~~~~--~~~a~~lGvd~~~l- 110 (325)
T cd00983 41 LSLDIALGI-GG----YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGT--VAFIDAEHALD--PVYAKKLGVDLDNL- 110 (325)
T ss_pred HHHHHHhcC-CC----ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCC--EEEECccccHH--HHHHHHcCCCHHHh-
Confidence 358888872 12 2479999999999999999999999998887766 99999988766 46789999997653
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc------C-----CChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA------N-----GGSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~------g-----~~~~ 155 (260)
.+.. ++ ...++...+...++. ....+||||.++.|.... | ....
T Consensus 111 -----~v~~-----------p~----~~eq~l~i~~~li~s-----~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR 165 (325)
T cd00983 111 -----LISQ-----------PD----TGEQALEIADSLVRS-----GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQAR 165 (325)
T ss_pred -----eecC-----------CC----CHHHHHHHHHHHHhc-----cCCCEEEEcchHhhcccccccccccccchHHHHH
Confidence 2111 11 123344444443332 246789999999996311 1 1123
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeecc--C---CCCCChhHHHHHcchhcceEEEeccCC---CcCccceeEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHED--I---YSSMERPTLILQMEYLADILIKAEPLS---TGLATDVHGQ 220 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~--~---~~~~e~~~l~~~L~h~a~~~i~l~pL~---TG~a~DVtG~ 220 (260)
.+..+++.|...+.+.++++|+..+.. . +.+++...=-+.|.|.|.+.+.+|... .| +|+.|.
T Consensus 166 ~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~--~~~~G~ 236 (325)
T cd00983 166 LMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDG--DEVIGN 236 (325)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHhhhcceEEEEEeecccccC--Cccccc
Confidence 345777777777788889888877632 1 112222223456999999999998653 33 456665
No 36
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.97 E-value=0.00028 Score=71.37 Aligned_cols=181 Identities=18% Similarity=0.186 Sum_probs=121.7
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||.+||. +. .|.|++++|....++.=+-|.++++..+.+.+.+ |+++.+.+++. ...++++|+|+...
T Consensus 47 ~LD~lLg~-GG----ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~--v~yId~E~t~~--~~~A~~lGvDl~~l-- 115 (790)
T PRK09519 47 ALDVALGI-GG----LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV--AAFIDAEHALD--PDYAKKLGVDTDSL-- 115 (790)
T ss_pred HHHHhhcC-CC----ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc--EEEECCccchh--HHHHHHcCCChhHe--
Confidence 57888852 11 2579999999999999999999999998887766 99999999888 46889999998753
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH------cCCC-----hHH
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA------ANGG-----SDY 156 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~------~g~~-----~~~ 156 (260)
.+ . .+. ........+...++. ....+||||.+..|... .|.. ...
T Consensus 116 ----lv----~-------~~~----~~E~~l~~i~~lv~~-----~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl 171 (790)
T PRK09519 116 ----LV----S-------QPD----TGEQALEIADMLIRS-----GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARL 171 (790)
T ss_pred ----EE----e-------cCC----CHHHHHHHHHHHhhc-----CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHH
Confidence 11 1 111 112333444443432 25678999999999731 1211 112
Q ss_pred HHHHHHHHHHhhcccCCeEEEEeecc--C---CCCCChhHHHHHcchhcceEEEecc---CCCcCccceeEEEEEEe
Q 024921 157 VLDFLHYCHALTSEFDCSLITLNHED--I---YSSMERPTLILQMEYLADILIKAEP---LSTGLATDVHGQLTVLN 225 (260)
Q Consensus 157 v~~fi~~l~~~~~~~~~~lv~l~h~~--~---~~~~e~~~l~~~L~h~a~~~i~l~p---L~TG~a~DVtG~L~v~~ 225 (260)
+..|++.|..+.++.++++|+..... . +.+.+...=-+.|.|.|.+.|.++- +..| +++.|..++.+
T Consensus 172 ~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~fg~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~--~~~~G~~~~~k 246 (790)
T PRK09519 172 MSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDG--TNAVGNRTRVK 246 (790)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecceecCCCcCCCCCcCCCCcccceeccEEEEeeeccccccC--ccccceEEEEE
Confidence 24677777777778888888776532 1 1122223334569999999999994 5555 36778877655
No 37
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.94 E-value=0.0036 Score=57.34 Aligned_cols=207 Identities=12% Similarity=0.098 Sum_probs=128.8
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhc----CCCCCCeEEEEEeccC--chhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSL----SPTSSNVIIFVAFANP--FSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L----~~~~~~~Vvlvs~~~~--~~hy~~~~~KlG~n 81 (260)
-||..|| .. .|.++++.|....++.-+=|.+++..++. .++...+|+++++..+ .......++++|++
T Consensus 84 ~lD~ll~--gG----i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~ 157 (316)
T TIGR02239 84 ELDKLLG--GG----IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLN 157 (316)
T ss_pred HHHHHhc--CC----CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4666664 22 34699999999999999988888876544 2322235999999985 44566688888888
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-CC-Ch----
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-NG-GS---- 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g~-~~---- 154 (260)
..... +++.+.+... ...+..+.+.+...+.. ....+||||.++.++.. . |- ..
T Consensus 158 ~~~~l--~~i~~~~~~~------------~~~~~~~l~~~~~~~~~-----~~~~LvVIDSI~al~r~~~~~~~~~~~rq 218 (316)
T TIGR02239 158 PEDVL--DNVAYARAYN------------TDHQLQLLQQAAAMMSE-----SRFALLIVDSATALYRTDFSGRGELSARQ 218 (316)
T ss_pred hHHhh--ccEEEEecCC------------hHHHHHHHHHHHHhhcc-----CCccEEEEECcHHHhhhhcCCcchHHHHH
Confidence 65432 2344433321 11122233333333321 24668999999999643 1 11 11
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeeccC--CC-------CCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEe
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHEDI--YS-------SMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLN 225 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~~--~~-------~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~ 225 (260)
..+..|++.|+.++.+.++++|+..|... .. +.....+-..+.|.++..|.++...+++ =.++|.+
T Consensus 219 ~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~~~~-----R~~~v~k 293 (316)
T TIGR02239 219 MHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQ-----RICKIYD 293 (316)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecCCCe-----EEEEEEE
Confidence 13457888888888888999998887432 11 1122356788999999999999654321 1344444
Q ss_pred cCCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 226 KGTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 226 ~~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
.+. . .+.+..|.+.++|+.
T Consensus 294 sp~-~-------p~~~~~f~i~~~Gi~ 312 (316)
T TIGR02239 294 SPC-L-------PESEAMFAIYEDGIG 312 (316)
T ss_pred CCC-C-------CCeEEEEEEeCCcee
Confidence 332 1 235588999998875
No 38
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=97.93 E-value=4.9e-05 Score=70.85 Aligned_cols=137 Identities=22% Similarity=0.247 Sum_probs=85.0
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEE-EEEeChhHHHHHc--CCChHHHHHHHHHHHHhhc--ccCCeEEEEeeccCCCC
Q 024921 112 GGLVLLYEKILKTICGLPGDKKDYVT-IMIDDISLVEVAA--NGGSDYVLDFLHYCHALTS--EFDCSLITLNHEDIYSS 186 (260)
Q Consensus 112 ~~l~~L~~~I~~~l~~~~~~~~~~~~-iIiDdl~~Ll~~~--g~~~~~v~~fi~~l~~~~~--~~~~~lv~l~h~~~~~~ 186 (260)
..+..+++.|++.+++......++++ |+|-++-.-.|.- .....+++.|++.||++.. ..++..++.+-.+...
T Consensus 177 ~~~~~ll~~i~~~i~~~~~~~~~~v~RI~I~sl~SP~w~~~~~~~~~~ll~FL~~LR~LlR~~~s~~v~~iTlP~~L~~- 255 (363)
T PF05625_consen 177 SPYRSLLQQIQQIISKSGFSPPSKVLRIVIPSLGSPLWYPPSASQPSELLRFLHSLRALLRKYSSNAVAMITLPSHLYP- 255 (363)
T ss_dssp --HHHHHHHHHHHHHH----TTTSEEEEEETTTT-TTTS-GGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEEGTTS--
T ss_pred HHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCcccCCcccccHHHHHHHHHHHHHHHhccCCCEEEEEEECHHHhc-
Confidence 45788999999988865111234555 8999888777642 1224469999999999977 4444444444444432
Q ss_pred CChhHHHHHcchhcceEEEeccCCCc-------CccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCc
Q 024921 187 MERPTLILQMEYLADILIKAEPLSTG-------LATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENT 250 (260)
Q Consensus 187 ~e~~~l~~~L~h~a~~~i~l~pL~TG-------~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~ 250 (260)
....+...|.|.||.+|+++|++.- ..++.+|-|+|.+-+....-+...+...+|-||++-+.
T Consensus 256 -~~~~~~~~l~~l~D~vi~Le~F~~~~~~~~~~~~~~~~Gll~v~KLp~~~sl~~~~~~~~~laFKl~Rkk 325 (363)
T PF05625_consen 256 -RSPSLVRRLEHLADGVIELESFAGSMEKETNPPFKDYHGLLHVHKLPRLNSLGPMTPDSSDLAFKLKRKK 325 (363)
T ss_dssp ---HHHHHHHHHHSSEEEEEEE--HHHHHTTT-GGG---EEEEEEE-TTHHHHT----EEEEEEEEE-SS-
T ss_pred -cChHHHHHHHHhCCEEEEeecCCCccccccCCcCcCCcEEEEEEEeccccccCCCCCCccceEEEeeeee
Confidence 1467999999999999999999855 68999999999998765433444566779999987554
No 39
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.85 E-value=0.00018 Score=65.88 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=115.7
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. .. .|+|++++|....++.=+-|.++++..+.+.+.+ |+++++.++++- ..++++|+|+...
T Consensus 41 ~~LD~~Lg~-GG----lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~--v~yId~E~~~~~--~~a~~lGvd~~~l- 110 (321)
T TIGR02012 41 LSLDLALGV-GG----LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGT--AAFIDAEHALDP--VYARKLGVDIDNL- 110 (321)
T ss_pred HHHHHHhcC-CC----CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc--EEEEcccchhHH--HHHHHcCCCHHHe-
Confidence 468888862 11 2479999999999999999999999999887766 999999886664 4688999998653
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc------C-----CChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA------N-----GGSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~------g-----~~~~ 155 (260)
.+.+. ....+....+...++. ....+||||.++.|.... | ....
T Consensus 111 -----~v~~p---------------~~~eq~l~~~~~li~~-----~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR 165 (321)
T TIGR02012 111 -----LVSQP---------------DTGEQALEIAETLVRS-----GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQAR 165 (321)
T ss_pred -----EEecC---------------CCHHHHHHHHHHHhhc-----cCCcEEEEcchhhhccchhhcccccccchhHHHH
Confidence 22111 1123333444333321 246689999999986321 1 1222
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccC-----CCCCChhHHHHHcchhcceEEEeccCCC---cCccceeEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDI-----YSSMERPTLILQMEYLADILIKAEPLST---GLATDVHGQ 220 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~-----~~~~e~~~l~~~L~h~a~~~i~l~pL~T---G~a~DVtG~ 220 (260)
.+..+++.|...+.+.++++|+..+... +.+++...=-+.|.|.|.+.+.++...+ | .+++|.
T Consensus 166 ~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~~~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~--~~~~g~ 236 (321)
T TIGR02012 166 LMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVKQG--EEVVGN 236 (321)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeccCcccCCCccCcCccHHHHHHhHhHhhhhhhccccC--Cceecc
Confidence 2346777777778888898888776321 1122222223448999999999876433 4 356665
No 40
>PRK05973 replicative DNA helicase; Provisional
Probab=97.80 E-value=0.0006 Score=59.93 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=95.0
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
++|++++|....|+.=+-+..+|+.+..+.+.+ |+++|+..+.+-...-+..+|++.....+. ..+|.... .
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~--vlyfSlEes~~~i~~R~~s~g~d~~~~~~~---~~~d~~d~-~-- 133 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRT--GVFFTLEYTEQDVRDRLRALGADRAQFADL---FEFDTSDA-I-- 133 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCe--EEEEEEeCCHHHHHHHHHHcCCChHHhccc---eEeecCCC-C--
Confidence 579999999999999999999999998877655 999999999999999999999998765431 12222110 0
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
....+...+.. . .+..+||||.+..+.. .....++..+++.+..++++.++++|++.+.+
T Consensus 134 ---------~~~~ii~~l~~---~-----~~~~lVVIDsLq~l~~--~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 134 ---------CADYIIARLAS---A-----PRGTLVVIDYLQLLDQ--RREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred ---------CHHHHHHHHHH---h-----hCCCEEEEEcHHHHhh--cccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 11122222222 1 1346899999999863 23334677788888888888888888887744
No 41
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.80 E-value=0.00089 Score=58.15 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=113.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHH--HHHHhccccccccCCceEE--eeccc
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRI--LRKLGCNLVTQRDNKRFIF--FDMLM 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~--~~KlG~nL~~~~~~g~~~f--vD~l~ 98 (260)
++|.+++|+...++.=+++..+++.++... +.+ |+++|+..+..-...- ++..|++.... .++.+.. .+.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~--vly~s~E~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 87 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKP--VLFFSLEMSKEQLLQRLLASESGISLSKL-RTGSLSDEDWERLA 87 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc--eEEEeCCCCHHHHHHHHHHHhcCCCHHHH-hcCCCCHHHHHHHH
Confidence 479999999999999999999999998876 555 9999999866544332 34567776653 2333332 00000
Q ss_pred ccC---CCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-CCC-hHHHHHHHHHHHHhhccc
Q 024921 99 LRC---PDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-NGG-SDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 99 ~~~---~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g~~-~~~v~~fi~~l~~~~~~~ 171 (260)
... ...+ -.......+..+.+.|+....+. +..+||||.+..+.... +.+ ..++..++..|+.++.+.
T Consensus 88 ~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~-----~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~ 162 (242)
T cd00984 88 EAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEH-----GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKEL 162 (242)
T ss_pred HHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 000 0000 00111234677777777665432 45689999999774211 111 345678899999999999
Q ss_pred CCeEEEEeeccCCC------CCChhHHH--HHcchhcceEEEeccCC
Q 024921 172 DCSLITLNHEDIYS------SMERPTLI--LQMEYLADILIKAEPLS 210 (260)
Q Consensus 172 ~~~lv~l~h~~~~~------~~e~~~l~--~~L~h~a~~~i~l~pL~ 210 (260)
++.+++++|..-.. ......+- ..+.+.||.+|.+.+-.
T Consensus 163 ~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~ 209 (242)
T cd00984 163 NVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDE 209 (242)
T ss_pred CCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEeccc
Confidence 99999999843210 11112222 45678999999998754
No 42
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.75 E-value=0.00016 Score=60.52 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred CCCCcEEEEeecCCCCccHHHHHHHHHhcCCC--------CCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEe
Q 024921 23 PLSGRVVLIEDCVETSGSFVLHQLVKRSLSPT--------SSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFF 94 (260)
Q Consensus 23 ~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~--------~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fv 94 (260)
.+.|.+++|..-.++.=|+++.++......+. .+.+|+++++..+.+....-+++++..+.. ..++.|+
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~---~~~~~~~ 105 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDD---DANLFFV 105 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-H---HHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCC---ccceEEe
Confidence 35799999999999999999999999988742 345699999999988888877777755522 2334455
Q ss_pred ecccc----cCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCC-hHHHHHHHHHHHHhhc
Q 024921 95 DMLML----RCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGG-SDYVLDFLHYCHALTS 169 (260)
Q Consensus 95 D~l~~----~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~-~~~v~~fi~~l~~~~~ 169 (260)
+.... ++.. ......+...++.+.+.+.... +..+||||.+..+... +.. ..++..++..++.+|.
T Consensus 106 ~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~----~~~lvviD~l~~~~~~-~~~~~~~~~~~~~~l~~la~ 176 (193)
T PF13481_consen 106 DLSNWGCIRLFEP----DSGGPLLDEDLEELEAALKELY----GPDLVVIDPLQSLHDG-DENSNSAVAQLMQELKRLAK 176 (193)
T ss_dssp HH--E-EE---TT----S---TTSHHHHHHHHHHHTT--------SEEEEE-GGGG--S--TT-HHHHHHHHHHHHHHHH
T ss_pred eccccccceeeec----ccccccchHHHHHHHHHHhhcC----CCcEEEEcCHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Confidence 43221 1110 0011124556667777776532 4669999999999854 333 3445688888999988
Q ss_pred ccCCeEEEEeecc
Q 024921 170 EFDCSLITLNHED 182 (260)
Q Consensus 170 ~~~~~lv~l~h~~ 182 (260)
..+++++++.|..
T Consensus 177 ~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 177 EYGVAVILVHHTN 189 (193)
T ss_dssp HH--EEEEEEEE-
T ss_pred HcCCEEEEEECCC
Confidence 8889999988854
No 43
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.67 E-value=0.016 Score=51.41 Aligned_cols=208 Identities=12% Similarity=0.136 Sum_probs=134.3
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcC----CCCCCeEEEEEecc--CchhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLS----PTSSNVIIFVAFAN--PFSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~----~~~~~~Vvlvs~~~--~~~hy~~~~~KlG~ 80 (260)
+-||++|+ +.- +.|.++=|....++.=+=|.+++.-+... ++...+|+++.... +......++++.+.
T Consensus 25 ~~lD~~L~--GGi----~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 25 KSLDELLG--GGI----PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL 98 (256)
T ss_dssp HHHHHHTT--SSE----ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS
T ss_pred HHHHHhhC--CCC----CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc
Confidence 35788882 222 36899999998888888888888655542 33456799999987 45677888888877
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CC-C----
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NG-G---- 153 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~-~---- 153 (260)
+-.... .++.+..+.+ ...+..+...+...+.+ .+-.+||||.++.++..- |. .
T Consensus 99 ~~~~~l--~~I~v~~~~~------------~~~l~~~L~~l~~~l~~-----~~ikLIVIDSIaalfr~e~~~~~~~~~R 159 (256)
T PF08423_consen 99 DPEEIL--DNIFVIRVFD------------LEELLELLEQLPKLLSE-----SKIKLIVIDSIAALFRSEFSGRGDLAER 159 (256)
T ss_dssp -HHHHH--HTEEEEE-SS------------HHHHHHHHHHHHHHHHH-----SCEEEEEEETSSHHHHHHSGSTTTHHHH
T ss_pred ccchhh--hceeeeecCC------------HHHHHHHHHHHHhhccc-----cceEEEEecchHHHHHHHHccchhhHHH
Confidence 654432 2455544433 11223333333333332 245689999999998642 21 1
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEeeccCCCC--------CChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEe
Q 024921 154 SDYVLDFLHYCHALTSEFDCSLITLNHEDIYSS--------MERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLN 225 (260)
Q Consensus 154 ~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~--------~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~ 225 (260)
...+.++++.|+.++.+.+.+||+.++.....+ .....+-..+.|.++..|.++.-..+ .-.++|.+
T Consensus 160 ~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~~-----~R~~~i~k 234 (256)
T PF08423_consen 160 QRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRGS-----ERVATIVK 234 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECSTT-----EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCCC-----eEEEEEeE
Confidence 244577788889999999999988887442211 11135788899999999999864422 45666666
Q ss_pred cCCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 226 KGTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 226 ~~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
.+.. .+.+..|.|.++||+
T Consensus 235 sp~~--------p~~~~~f~It~~Gi~ 253 (256)
T PF08423_consen 235 SPSL--------PEGSASFQITEDGIR 253 (256)
T ss_dssp CSSS--------SSEEEEEEEETTEEE
T ss_pred CCCC--------CCceEEEEEeCCCcc
Confidence 5432 236788999999986
No 44
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.29 E-value=0.0059 Score=56.01 Aligned_cols=180 Identities=16% Similarity=0.156 Sum_probs=114.4
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+.||.+||. .-.| .|+++-|....++--+-|..+++..+.+.+.. ++|+...+. ++..-+.++|+|+++.
T Consensus 39 ~~LD~aLg~--GG~p---~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~--~a~ID~e~~--ld~~~a~~lGvdl~rl- 108 (322)
T PF00154_consen 39 PALDYALGI--GGLP---RGRIVEIYGPESSGKTTLALHAIAEAQKQGGI--CAFIDAEHA--LDPEYAESLGVDLDRL- 108 (322)
T ss_dssp HHHHHHTSS--SSEE---TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-E--EEEEESSS-----HHHHHHTT--GGGE-
T ss_pred cccchhhcc--Cccc---cCceEEEeCCCCCchhhhHHHHHHhhhcccce--eEEecCccc--chhhHHHhcCccccce-
Confidence 468999973 3333 79999998887888888989999988876544 888888766 5778889999999862
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-----------cCCChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-----------ANGGSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-----------~g~~~~ 155 (260)
.++.. ++ -++.+..+...++. +...+||||.+..|..- .|..++
T Consensus 109 -----lv~~P-----------~~----~E~al~~~e~lirs-----g~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar 163 (322)
T PF00154_consen 109 -----LVVQP-----------DT----GEQALWIAEQLIRS-----GAVDLVVVDSVAALVPKAELEGEIGDQQVGLQAR 163 (322)
T ss_dssp -----EEEE------------SS----HHHHHHHHHHHHHT-----TSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHH
T ss_pred -----EEecC-----------Cc----HHHHHHHHHHHhhc-----ccccEEEEecCcccCCHHHHhhccccccCcchHH
Confidence 33321 11 12233333333331 23458999999988321 133356
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeec--cC---CCCCChhHHHHHcchhcceEEEecc---CCCcCccceeEEEEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHE--DI---YSSMERPTLILQMEYLADILIKAEP---LSTGLATDVHGQLTV 223 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~--~~---~~~~e~~~l~~~L~h~a~~~i~l~p---L~TG~a~DVtG~L~v 223 (260)
.+..+++.+.....+.+|.+|.+++. .. +.+.+-..=-+.|.|.|++.|.++. +..|. ++.|...-
T Consensus 164 ~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g~~~~t~GG~alkfyas~rl~i~k~~~ik~~~--~~iG~~~~ 237 (322)
T PF00154_consen 164 LMSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFGNPETTPGGRALKFYASVRLEIRKKEQIKEGD--EVIGNKIK 237 (322)
T ss_dssp HHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSSSSSCCTSHHHHHHHCSEEEEEEEEEEEEETT--CECEEEEE
T ss_pred HHHHHHHHHHHHHHhhceEEEEeehHHHHHhhccCCCcCCCCCchhhhhhhhHHhhhcccccccCC--cccccEEE
Confidence 67888888888888999999999883 21 2222222236778999999999875 45554 78887644
No 45
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.11 E-value=0.04 Score=43.69 Aligned_cols=157 Identities=11% Similarity=0.022 Sum_probs=93.5
Q ss_pred EEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCCCCCC
Q 024921 29 VLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGK 108 (260)
Q Consensus 29 ~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~ 108 (260)
++|....|+.=++++..+.....+.+.+ |+++++..........+... ......+++.+++..+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~--v~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------- 67 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGK--VVYVDIEEEIEELTERLIGE----SLKGALDNLIIVFATADD-------- 67 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCE--EEEEECCcchHHHHHHHhhh----hhccccccEEEEEcCCCC--------
Confidence 5677777888899999999988775555 99999987766543332111 111122344444443321
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc----CCChHHHHHHHHHHHHhhcccCCeEEEEeeccCC
Q 024921 109 SSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA----NGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIY 184 (260)
Q Consensus 109 ~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~----g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~ 184 (260)
.....+...+..... .....++|||++..+.... +.....+..++..+.....+.++++|+..|....
T Consensus 68 ---~~~~~~~~~~~~~~~-----~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 ---PAAARLLSKAERLRE-----RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred ---CcHHHHHHHHHHHHh-----CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 111222222222222 1357799999999986431 1223455677777777666677889999987654
Q ss_pred CCCCh--hHHHHHcchhcceEEEec
Q 024921 185 SSMER--PTLILQMEYLADILIKAE 207 (260)
Q Consensus 185 ~~~e~--~~l~~~L~h~a~~~i~l~ 207 (260)
.+... .+-...+.|.||.++.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~d~~~~l~ 164 (165)
T cd01120 140 DKGDPRLTRGAQNLEDIADTVIVLS 164 (165)
T ss_pred cccCcccccCccceeeecceEEEEe
Confidence 32110 123456888999888775
No 46
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.046 Score=51.54 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=115.8
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDV 104 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~ 104 (260)
+|+++||...-|..=|=||.+.....-+.+ + |+.||-.++..-++--++|||++... +..+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~--vLYVsGEES~~QiklRA~RL~~~~~~---------l~l~a------ 153 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-K--VLYVSGEESLQQIKLRADRLGLPTNN---------LYLLA------ 153 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-c--EEEEeCCcCHHHHHHHHHHhCCCccc---------eEEeh------
Confidence 489999999999999999999999877665 5 99999999999999999999998632 11122
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH----cCCChHHHHHHHHHHHHhhcccCCeEEEEee
Q 024921 105 DEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA----ANGGSDYVLDFLHYCHALTSEFDCSLITLNH 180 (260)
Q Consensus 105 ~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~----~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h 180 (260)
+..++.++..|.+ ..+.++|||.+-.+... ...+..++..--..|..++++.+.++++.-|
T Consensus 154 ------Et~~e~I~~~l~~---------~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 154 ------ETNLEDIIAELEQ---------EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred ------hcCHHHHHHHHHh---------cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 2335555444433 25789999999998643 1345666766666677777888888888888
Q ss_pred ccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEe
Q 024921 181 EDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLN 225 (260)
Q Consensus 181 ~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~ 225 (260)
..=..... =-+-|+|+-|.++..+ .|-+..+|+-|
T Consensus 219 VTKeG~IA---GPrvLEHmVDtVlyFE-------Gd~~~~~RiLR 253 (456)
T COG1066 219 VTKEGAIA---GPRVLEHMVDTVLYFE-------GDRHSRYRILR 253 (456)
T ss_pred Eccccccc---CchheeeeeeEEEEEe-------ccCCCceeeee
Confidence 53211100 1234999999999998 36778888888
No 47
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.76 E-value=0.058 Score=47.02 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=102.4
Q ss_pred CcEEEEeecCCCCccHHHHHHHHHhcCC----------CCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEee
Q 024921 26 GRVVLIEDCVETSGSFVLHQLVKRSLSP----------TSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFD 95 (260)
Q Consensus 26 ~~l~litd~~~t~~sfLl~~~l~~~L~~----------~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD 95 (260)
|.+.+|....++.=|||..++......+ ..+.+|+++++..+..-.+.-++.++-++......+++.+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 4677888888999999999998765432 123469999999888766555555555443222234444432
Q ss_pred cccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeE
Q 024921 96 MLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSL 175 (260)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~l 175 (260)
+....+.. ..++ .......+..|.+.+.. .+..+||||-+..+......+..+...++..+..++.+.++++
T Consensus 81 g~~~~l~~-~~~~--~~~~~~~~~~l~~~~~~-----~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~av 152 (239)
T cd01125 81 GRIQPISI-AREG--RIIVVPEFERIIEQLLI-----RRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAI 152 (239)
T ss_pred cCCCceec-ccCC--cccccHHHHHHHHHHHh-----cCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 22111110 0000 01122233334443321 2467999997766521112345566778888888777778899
Q ss_pred EEEeeccCCCC-----CChhHHHHHcchhcceEEEeccCCCcCc
Q 024921 176 ITLNHEDIYSS-----MERPTLILQMEYLADILIKAEPLSTGLA 214 (260)
Q Consensus 176 v~l~h~~~~~~-----~e~~~l~~~L~h~a~~~i~l~pL~TG~a 214 (260)
+++.|..-... .+..+=...+...++.++.+.+.+.-.+
T Consensus 153 l~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~ 196 (239)
T cd01125 153 LLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSEEA 196 (239)
T ss_pred EEEeccCcccccCcccccccCcHHHHhcccceEEEEeeCCHHHH
Confidence 99998542110 0111114445566777777777654443
No 48
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.48 E-value=0.14 Score=48.63 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=109.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcC-CCCCCeEEEEEeccCchhHH--HHHHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLS-PTSSNVIIFVAFANPFSHYD--RILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~-~~~~~~Vvlvs~~~~~~hy~--~~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
++|.+++|....++.=+.+..+++.+... .+.+ |+++|+..+..-.. ..+...|+++.... +|.+..-|.-.
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~--vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~-~g~l~~~~~~~~~ 269 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKP--VAFFSLEMSAEQLAMRMLSSESRVDSQKLR-TGKLSDEDWEKLT 269 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCe--EEEEeCcCCHHHHHHHHHHHhcCCCHHHhc-cCCCCHHHHHHHH
Confidence 46999999999999999999999988654 4444 99999997665542 23445677766543 34443322210
Q ss_pred cc---CCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC--CChHHHHHHHHHHHHhhccc
Q 024921 99 LR---CPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN--GGSDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 99 ~~---~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g--~~~~~v~~fi~~l~~~~~~~ 171 (260)
.. ....+ -.+.....+..+...++....+. +..+||||.+..+..... ....++..+.+.|+.++.+.
T Consensus 270 ~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~-----~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~ 344 (434)
T TIGR00665 270 SAAGKLSEAPLYIDDTPGLTITELRAKARRLKREH-----GLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL 344 (434)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 00 00000 00111234566766666654432 356899999987741111 12345677788899999999
Q ss_pred CCeEEEEeeccCC------CCCChhHH--HHHcchhcceEEEeccC
Q 024921 172 DCSLITLNHEDIY------SSMERPTL--ILQMEYLADILIKAEPL 209 (260)
Q Consensus 172 ~~~lv~l~h~~~~------~~~e~~~l--~~~L~h~a~~~i~l~pL 209 (260)
+|.+++++|..-. .......+ ...+.+.||++|-+..-
T Consensus 345 ~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~ 390 (434)
T TIGR00665 345 NVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRD 390 (434)
T ss_pred CCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccc
Confidence 9999999984311 11111112 35678899999988653
No 49
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.99 E-value=0.16 Score=48.06 Aligned_cols=179 Identities=14% Similarity=0.086 Sum_probs=107.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHH--HHHHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYD--RILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~--~~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
.+|.+++|....+..=+.+..++..+.. +.+.+ |+++|+.-+..-.. -.++..|+++.... .|++.--|.-.
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~--v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~-~~~l~~~~~~~~~ 268 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKP--VLFFSLEMSAEQLGERLLASKSGINTGNIR-TGRFNDSDFNRLL 268 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHHHHcCCCHHHHh-cCCCCHHHHHHHH
Confidence 4699999999999988888888886654 55545 99999886554432 23556788877653 34443222110
Q ss_pred ccC---CCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCC-hHHHHHHHHHHHHhhcccC
Q 024921 99 LRC---PDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGG-SDYVLDFLHYCHALTSEFD 172 (260)
Q Consensus 99 ~~~---~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~-~~~v~~fi~~l~~~~~~~~ 172 (260)
..+ .+.+ -.+.....+..+...++....+. .+..+||||-+..+....+.+ ..++....+.|+.++...+
T Consensus 269 ~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~----~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~ 344 (421)
T TIGR03600 269 NAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKK----GGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELD 344 (421)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc----CCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 000 0000 00111234566666655443321 135589999998774211222 3356677788899999999
Q ss_pred CeEEEEeeccCCC------CCChhHH--HHHcchhcceEEEeccC
Q 024921 173 CSLITLNHEDIYS------SMERPTL--ILQMEYLADILIKAEPL 209 (260)
Q Consensus 173 ~~lv~l~h~~~~~------~~e~~~l--~~~L~h~a~~~i~l~pL 209 (260)
+.||+++|-.-.. .....+| .-.+.+.||+++-+.+-
T Consensus 345 i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~ 389 (421)
T TIGR03600 345 VPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHRE 389 (421)
T ss_pred CcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccc
Confidence 9999999943211 1111122 24678899999998754
No 50
>PHA02542 41 41 helicase; Provisional
Probab=95.81 E-value=0.42 Score=46.25 Aligned_cols=177 Identities=11% Similarity=0.057 Sum_probs=105.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEee------
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFD------ 95 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD------ 95 (260)
.+|.+++|....+..=+.+...+..++.+.+.+ |+++|+.-+..-... .+...|+++....+ +..-|
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~--Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~---l~~~~~~~~~~ 262 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYN--VLYISMEMAEEVIAKRIDANLLDVSLDDIDD---LSKAEYKAKME 262 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCc--EEEEeccCCHHHHHHHHHHHHcCCCHHHHhh---cCHHHHHHHHH
Confidence 578999999999999999999999888765555 999999987765433 44556788766532 11000
Q ss_pred cccccC-CCC--CCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c----CCChHHHHHHHHHHHHh
Q 024921 96 MLMLRC-PDV--DEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A----NGGSDYVLDFLHYCHAL 167 (260)
Q Consensus 96 ~l~~~~-~~~--~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~----g~~~~~v~~fi~~l~~~ 167 (260)
.+..+. .++ ...++.......+...+++...+ .+ .+.-+||||-|..+-.. . .-...++....+.|+.+
T Consensus 263 ~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~-~g--~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~l 339 (473)
T PHA02542 263 KLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLK-KN--FKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGL 339 (473)
T ss_pred HHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHh-cC--CCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHH
Confidence 000000 000 00011122234444444443221 11 12458999999887421 0 11245577778889999
Q ss_pred hcccCCeEEEEeeccCCC----CC--ChhHHHHHcchhcceEEEecc
Q 024921 168 TSEFDCSLITLNHEDIYS----SM--ERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 168 ~~~~~~~lv~l~h~~~~~----~~--e~~~l~~~L~h~a~~~i~l~p 208 (260)
+...++.|+.+++-.=.. +. .+-+=.-.+.+-||+++-+..
T Consensus 340 Akel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~r 386 (473)
T PHA02542 340 AVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVIE 386 (473)
T ss_pred HHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEec
Confidence 999999999998833110 11 111224468889999999843
No 51
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=95.37 E-value=0.065 Score=43.10 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCC
Q 024921 111 EGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSS 186 (260)
Q Consensus 111 ~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~ 186 (260)
|..+..+.+.|.+.+++. ++.+|+||+++-|.-..| -..+.+|+..++..+-..++.+++....++.++
T Consensus 57 Pt~L~~l~~~i~~fl~~~-----~~~vViiD~lEYL~l~Ng--F~~v~KFL~~LkD~~~~~~~~lIl~~~~~al~e 125 (136)
T PF05763_consen 57 PTNLHKLLDTIVRFLKEN-----GNGVVIIDGLEYLILENG--FESVLKFLASLKDYALLNNGTLILVVDPEALDE 125 (136)
T ss_pred chhhHHHHHHHHHHHHhC-----CCcEEEEecHHHHHHHcC--HHHHHHHHHHhHHHeeccCCEEEEEEChhhcCH
Confidence 556788888888877751 355999999999975444 468899999999887666666665555555544
No 52
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.13 E-value=0.72 Score=41.97 Aligned_cols=138 Identities=14% Similarity=0.283 Sum_probs=93.4
Q ss_pred CccchhhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCC----CCeEEEEEec---cCchhHHHH
Q 024921 2 ENQYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTS----SNVIIFVAFA---NPFSHYDRI 74 (260)
Q Consensus 2 ~~~~~~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~----~~~Vvlvs~~---~~~~hy~~~ 74 (260)
++++++.|++.|..+... -...+.++-++ +..=+.++.+|...+-.... ..+|+.|-.- ....||.++
T Consensus 42 A~~~L~~L~~Ll~~P~~~----Rmp~lLivG~s-nnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 42 AKEALDRLEELLEYPKRH----RMPNLLIVGDS-NNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHHhCCccc----CCCceEEecCC-CCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 356788888888653222 23457777775 88888899999998764331 2347777653 456799999
Q ss_pred HHHHhccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCCh
Q 024921 75 LRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGS 154 (260)
Q Consensus 75 ~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~ 154 (260)
+..+|.+...- .....+...+...++.. +.-++|||.+-.++. ++.
T Consensus 117 L~~lgaP~~~~--------------------------~~~~~~~~~~~~llr~~-----~vrmLIIDE~H~lLa---Gs~ 162 (302)
T PF05621_consen 117 LEALGAPYRPR--------------------------DRVAKLEQQVLRLLRRL-----GVRMLIIDEFHNLLA---GSY 162 (302)
T ss_pred HHHhCcccCCC--------------------------CCHHHHHHHHHHHHHHc-----CCcEEEeechHHHhc---ccH
Confidence 99999886431 11233444444445543 456899999988873 345
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEE
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITL 178 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l 178 (260)
.+-..|+..++.++.+.+.++|..
T Consensus 163 ~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 163 RKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEe
Confidence 566788888888888888888864
No 53
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.0044 Score=52.77 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=76.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGL 213 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~ 213 (260)
.++++++++++++....-++...++.-+-..+ |.. .|+...|-+.+...|-..=..-+.|++...+..||+-.|.
T Consensus 129 ~~~v~~~e~i~~~~~t~~vDd~sil~~~~~g~--~~~---~Vldfvhycatl~~e~~~~~vIlvH~~~~a~~erp~~ll~ 203 (248)
T KOG4723|consen 129 ENSVIIIEDIDILQSTHAVDDTSILQAILEGR--CFS---RVLDFVHYCATLPQEKSLGSVILVHMATRAISERPLTLLS 203 (248)
T ss_pred hhheeeeeeeecccceEEEchHHHHHHHHccc--chH---HHhhhhhhccccchhhcCCeEEEEecccchhccCchhhhh
Confidence 47899999999886432233222222221111 111 2555556443322121111234669999999999999999
Q ss_pred ccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEeeCCc
Q 024921 214 ATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGS 258 (260)
Q Consensus 214 a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~rG~ 258 (260)
++-++|.|++.+-+-. .+-.....+++.|-+.++|.|++.||-
T Consensus 204 ~~~~~~~l~l~aepla--sG~c~Dvhgqv~y~~~~~g~k~~~p~i 246 (248)
T KOG4723|consen 204 ARRITGFLRLSAEPLA--SGICEDVHGQVLYEVTEAGAKVYSPGI 246 (248)
T ss_pred hhhhcceEEEeccccc--cccccccchhhhHHhhcCcceeecccc
Confidence 9999999999887633 244445678999999999999999884
No 54
>KOG3949 consensus RNA polymerase II elongator complex, subunit ELP4 [Chromatin structure and dynamics; Transcription]
Probab=94.90 E-value=0.098 Score=48.02 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCc------cceeEEEEEEecCCCC
Q 024921 157 VLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLA------TDVHGQLTVLNKGTSH 230 (260)
Q Consensus 157 v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a------~DVtG~L~v~~~~~~~ 230 (260)
+..|++-|+++....+. |+++....... ........|.++||++|+++|.+-+.- +|.+|-+.|.+-+...
T Consensus 231 ~ikfL~~Lrslvr~~~~--vciit~p~~l~-~~~~~~~~l~~laD~vi~Le~f~~~e~e~~~~~k~~~Gllhi~Klp~~~ 307 (360)
T KOG3949|consen 231 LIKFLYLLRSLVRSSYS--VCIITAPSSLI-PKPSLIARLENLADTVIGLEPFPGNEKETNPLYKDYHGLLHIHKLPRLN 307 (360)
T ss_pred HHHHHHHHHHHHhhcce--EEEEeechhhc-cchhHHHHHHHHHHHHhcccccCCcccccccccccccceeeeeeccccc
Confidence 56899989888654432 22222221111 113578899999999999999887665 8999999999987765
Q ss_pred CCCCCCCceeeEeEEEecCcE
Q 024921 231 RLGRSGNKIHNFHYKVKENTV 251 (260)
Q Consensus 231 ~~~~~~~~~~e~lY~v~D~~V 251 (260)
.-+....+.+++-|+++.+..
T Consensus 308 ~~~~~~~e~~dlafklkRk~F 328 (360)
T KOG3949|consen 308 TLGTHTLEAKDLAFKLKRKKF 328 (360)
T ss_pred ccccccccccceeeeeeccee
Confidence 545556677899999875443
No 55
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.6 Score=43.00 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCC--------CCCeEEEEEeccCc----hhHHHHHHHHhccccccccCCceE
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPT--------SSNVIIFVAFANPF----SHYDRILRKLGCNLVTQRDNKRFI 92 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~--------~~~~Vvlvs~~~~~----~hy~~~~~KlG~nL~~~~~~g~~~ 92 (260)
.+...+|-...++.-++++..+.-..-.|. ..-+|+.|++.-+. ...+.++.+||+.-... .
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadv------r 161 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADV------R 161 (402)
T ss_pred cCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhh------h
Confidence 456667756668888887766544332221 22359999998654 56788888899876543 3
Q ss_pred EeecccccCCCCCCCCCCCcchH-HHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC--CChHHHHHHHHHHHHhhc
Q 024921 93 FFDMLMLRCPDVDEGKSSEGGLV-LLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN--GGSDYVLDFLHYCHALTS 169 (260)
Q Consensus 93 fvD~l~~~~~~~~~~~~~~~~l~-~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g--~~~~~v~~fi~~l~~~~~ 169 (260)
-+|. ++.-+.. .+ ++.+. .|+..-...+.+. .+.+||||-.-..+ .| .+..++..|+...|.+|.
T Consensus 162 n~dl-td~~Gaa-~~---~d~l~pkl~rRfek~~~Q~-----rp~~vViDp~v~f~--~G~s~s~vqv~~fi~~~rkla~ 229 (402)
T COG3598 162 NMDL-TDVSGAA-DE---SDVLSPKLYRRFEKILEQK-----RPDFVVIDPFVAFY--EGKSISDVQVKEFIKKTRKLAR 229 (402)
T ss_pred heec-cccccCC-Cc---cccccHHHHHHHHHHHHHh-----CCCeEEEcchhhhc--CCccchhHHHHHHHHHHHHHHH
Confidence 4454 3221111 11 11121 3444433434432 56789999887765 34 346677999999999999
Q ss_pred ccCCeEEEEeecc
Q 024921 170 EFDCSLITLNHED 182 (260)
Q Consensus 170 ~~~~~lv~l~h~~ 182 (260)
...|+|+.+.|..
T Consensus 230 ~l~caIiy~hHts 242 (402)
T COG3598 230 NLECAIIYIHHTS 242 (402)
T ss_pred hcCCeEEEEeccc
Confidence 9999999999965
No 56
>PRK09165 replicative DNA helicase; Provisional
Probab=94.77 E-value=0.6 Score=45.43 Aligned_cols=178 Identities=8% Similarity=0.059 Sum_probs=106.4
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCC-------------CCCeEEEEEeccCchhHHH--HHHHHhccccccccC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPT-------------SSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDN 88 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~-------------~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~ 88 (260)
.+|.+++|....+..=+++..++..+..+.. .+.+|+++|+.-+..-... .+...|+++.... +
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~-~ 293 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIR-R 293 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHh-c
Confidence 4699999999989888888888877765321 1345999999977754433 4456688877643 4
Q ss_pred CceE------EeecccccCC-CCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC---CC-hHHH
Q 024921 89 KRFI------FFDMLMLRCP-DVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN---GG-SDYV 157 (260)
Q Consensus 89 g~~~------fvD~l~~~~~-~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g---~~-~~~v 157 (260)
|++. +.+....+.. ++-..+...-.+..+...+++...+ .+..+||||-+..+..... .+ ..++
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~-----~~~~lvvIDyLqli~~~~~~~~~~r~~ev 368 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ-----HGLDLLVVDYLQLIRGSSKRSSDNRVQEI 368 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEcchHhccCCCCCCCCchHHHH
Confidence 4432 1111110000 0000011123355666666553322 2356899999997752211 11 2457
Q ss_pred HHHHHHHHHhhcccCCeEEEEeeccCCC------CCC--hhHHHHHcchhcceEEEec
Q 024921 158 LDFLHYCHALTSEFDCSLITLNHEDIYS------SME--RPTLILQMEYLADILIKAE 207 (260)
Q Consensus 158 ~~fi~~l~~~~~~~~~~lv~l~h~~~~~------~~e--~~~l~~~L~h~a~~~i~l~ 207 (260)
-.+.+.|+.++...++.|+++++-.-.. ... +-+=.-.+.+.||+++-+-
T Consensus 369 ~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 369 SEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred HHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEe
Confidence 7778888999999999999998833110 011 1122456888999999874
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.71 E-value=0.28 Score=37.82 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=74.3
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCC---CCCCeEEEEEeccCc---hhHHHHHHHHhccccccccCCceEEeeccc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSP---TSSNVIIFVAFANPF---SHYDRILRKLGCNLVTQRDNKRFIFFDMLM 98 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~---~~~~~Vvlvs~~~~~---~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~ 98 (260)
++++++|....|+.=++++.++...+... ..+.+|+.+...... .+|..+++++|.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 56789999999999999999999987632 013458888877544 7888888888877654
Q ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEE
Q 024921 99 LRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITL 178 (260)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l 178 (260)
......+++.+.+.+... ...+||||+.+.|. + .+.+.++..+ ....+..+|+.
T Consensus 69 ------------~~~~~~l~~~~~~~l~~~-----~~~~lviDe~~~l~-----~-~~~l~~l~~l---~~~~~~~vvl~ 122 (131)
T PF13401_consen 69 ------------RQTSDELRSLLIDALDRR-----RVVLLVIDEADHLF-----S-DEFLEFLRSL---LNESNIKVVLV 122 (131)
T ss_dssp ------------TS-HHHHHHHHHHHHHHC-----TEEEEEEETTHHHH-----T-HHHHHHHHHH---TCSCBEEEEEE
T ss_pred ------------cCCHHHHHHHHHHHHHhc-----CCeEEEEeChHhcC-----C-HHHHHHHHHH---HhCCCCeEEEE
Confidence 012455666677766643 34799999999964 2 5666666444 33444455554
Q ss_pred eec
Q 024921 179 NHE 181 (260)
Q Consensus 179 ~h~ 181 (260)
-+.
T Consensus 123 G~~ 125 (131)
T PF13401_consen 123 GTP 125 (131)
T ss_dssp ESS
T ss_pred ECh
Confidence 433
No 58
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.65 E-value=2.5 Score=38.17 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=121.3
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccc-ccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNL-VTQ 85 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL-~~~ 85 (260)
-.||++|| .-+| .|..+=|-..-++--+-+-+|+.-++.+.+.+ |+++...+.+.= .=++++|.+. ..
T Consensus 47 ~~LD~~LG---GGl~---~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~--a~fIDtE~~l~p--~r~~~l~~~~~d~- 115 (279)
T COG0468 47 LALDEALG---GGLP---RGRITEIYGPESSGKTTLALQLVANAQKPGGK--AAFIDTEHALDP--ERAKQLGVDLLDN- 115 (279)
T ss_pred hhHHHHhc---CCcc---cceEEEEecCCCcchhhHHHHHHHHhhcCCCe--EEEEeCCCCCCH--HHHHHHHHhhhcc-
Confidence 35888998 3333 79999998888889999999999999998876 999998885542 2234566663 21
Q ss_pred ccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--C-----CChHHHH
Q 024921 86 RDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--N-----GGSDYVL 158 (260)
Q Consensus 86 ~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g-----~~~~~v~ 158 (260)
+.+. ++.+ ..+-...+...+.-.. ..-.+||||.++.+.-.- + .....+.
T Consensus 116 -----l~v~-----------~~~~----~e~q~~i~~~~~~~~~---~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls 172 (279)
T COG0468 116 -----LLVS-----------QPDT----GEQQLEIAEKLARSGA---EKIDLLVVDSVAALVRAEEIEDGHLGLRARLLS 172 (279)
T ss_pred -----eeEe-----------cCCC----HHHHHHHHHHHHHhcc---CCCCEEEEecCcccchhhhcCcchHHHHHHHHH
Confidence 1111 1111 1222222222222111 135689999999985331 1 1233445
Q ss_pred HHHHHHHHhhcccCCeEEEEeecc--C---CCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCC
Q 024921 159 DFLHYCHALTSEFDCSLITLNHED--I---YSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLG 233 (260)
Q Consensus 159 ~fi~~l~~~~~~~~~~lv~l~h~~--~---~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~ 233 (260)
+.++.|..++.+.++++|+.+..- + ..+.+.+-=-+.|.|.|.+.+.++-..+.. .| -|.-++.+--. .
T Consensus 173 ~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~-~~-~g~~r~~~vvk----~ 246 (279)
T COG0468 173 KALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK-ED-VGNKRRVKVVK----N 246 (279)
T ss_pred HHHHHHHHHHHHcCcEEEEECceeeecCcccCCcccCCCchHHHhhhheEEEEeeccccc-cc-cCCeEEEEEEe----C
Confidence 666667777888888888877632 1 112222223566999999999999887666 44 44333332211 1
Q ss_pred CCCCceeeEeEEEecC
Q 024921 234 RSGNKIHNFHYKVKEN 249 (260)
Q Consensus 234 ~~~~~~~e~lY~v~D~ 249 (260)
...+.-++-.|.+.++
T Consensus 247 ~~~p~~~~a~f~I~~~ 262 (279)
T COG0468 247 KVAPPFKEAEFDITYG 262 (279)
T ss_pred CCCCCCceeEEEeecC
Confidence 1223345777777654
No 59
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.56 E-value=0.82 Score=40.19 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=118.5
Q ss_pred hhHHhhhC-CCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhH--HHHHHHHhcccc
Q 024921 7 NLLDRALG-LDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHY--DRILRKLGCNLV 83 (260)
Q Consensus 7 ~~l~~~l~-~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy--~~~~~KlG~nL~ 83 (260)
+.||..+| | .+|.+++|....+..=+++..++..++...+. .+|+++|+..+..-. +.+++..|++..
T Consensus 7 ~~LD~~lgG~--------~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlEm~~~~l~~R~la~~s~v~~~ 77 (259)
T PF03796_consen 7 PALDRLLGGL--------RPGELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLEMSEEELAARLLARLSGVPYN 77 (259)
T ss_dssp HHHHHHHSSB---------TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESSS-HHHHHHHHHHHHHTSTHH
T ss_pred HHHHHHhcCC--------CcCcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHhhcchhh
Confidence 45788874 4 35899999999999999999999888876532 459999998655432 335556788776
Q ss_pred ccccCCceEEee------cccccCCC-CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-CCCh
Q 024921 84 TQRDNKRFIFFD------MLMLRCPD-VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-NGGS 154 (260)
Q Consensus 84 ~~~~~g~~~fvD------~l~~~~~~-~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g~~~ 154 (260)
...+ |.+.-=| ....+... +--.+..+..+..+...|+..-... .+-.+||||.+..+-.. . ....
T Consensus 78 ~i~~-g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~----~~~~~v~IDyl~ll~~~~~~~~~~ 152 (259)
T PF03796_consen 78 KIRS-GDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG----KKVDVVFIDYLQLLKSEDSSDNRR 152 (259)
T ss_dssp HHHC-CGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS----TTEEEEEEEEGGGSBTSCSSSCCH
T ss_pred hhhc-cccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc----cCCCEEEechHHHhcCCCCCCCHH
Confidence 6433 3222000 00000000 0000111234556665555433321 24568999999987531 1 1224
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeeccC--CC--CCCh--hHH--HHHcchhcceEEEeccCCC--c-CccceeEEEEE
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHEDI--YS--SMER--PTL--ILQMEYLADILIKAEPLST--G-LATDVHGQLTV 223 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~~--~~--~~e~--~~l--~~~L~h~a~~~i~l~pL~T--G-~a~DVtG~L~v 223 (260)
.++-...+.|++++.+.++.||++++-.- .. +.++ .+| .-.+.+.||+++-+..-.- . ...+-.-+|.|
T Consensus 153 ~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~v 232 (259)
T PF03796_consen 153 QEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELIV 232 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEEE
Confidence 55677788899999999999999998431 11 1111 111 2457889999999875321 1 11123566777
Q ss_pred EecC
Q 024921 224 LNKG 227 (260)
Q Consensus 224 ~~~~ 227 (260)
.+..
T Consensus 233 ~KnR 236 (259)
T PF03796_consen 233 AKNR 236 (259)
T ss_dssp EEES
T ss_pred EecC
Confidence 6654
No 60
>PRK08506 replicative DNA helicase; Provisional
Probab=94.34 E-value=1.1 Score=43.26 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=109.2
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHH--HHHHHHhccccccccCCceEEeeccc--c
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYD--RILRKLGCNLVTQRDNKRFIFFDMLM--L 99 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~--~~~~KlG~nL~~~~~~g~~~fvD~l~--~ 99 (260)
.+|.+++|....+..=+.+...+..++.+.+.+ |+++|+.-+..-.. -.++..|+++.... +|++.--|.-. .
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~--V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~-~~~l~~~e~~~~~~ 266 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKG--VAFFSLEMPAEQLMLRMLSAKTSIPLQNLR-TGDLDDDEWERLSD 266 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCc--EEEEeCcCCHHHHHHHHHHHhcCCCHHHHh-cCCCCHHHHHHHHH
Confidence 468999999999999999999999888766544 99999987665543 24455788887653 34432111110 0
Q ss_pred c---CCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CCChHHHHHHHHHHHHhhcccC
Q 024921 100 R---CPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NGGSDYVLDFLHYCHALTSEFD 172 (260)
Q Consensus 100 ~---~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~~~~~v~~fi~~l~~~~~~~~ 172 (260)
. +.+.+ -.+.....+..+...+++...+. .+-.+||||-+..+.... +....++....+.|+.++...+
T Consensus 267 a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~----~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ 342 (472)
T PRK08506 267 ACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQH----PEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELD 342 (472)
T ss_pred HHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhC----CCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 0 00000 00112234566666665543321 134589999998664211 1123456667778899999999
Q ss_pred CeEEEEeeccCCC------CCChhHH--HHHcchhcceEEEecc
Q 024921 173 CSLITLNHEDIYS------SMERPTL--ILQMEYLADILIKAEP 208 (260)
Q Consensus 173 ~~lv~l~h~~~~~------~~e~~~l--~~~L~h~a~~~i~l~p 208 (260)
+.||++++-.-.. .....+| .-.+.+.||+++-+..
T Consensus 343 ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R 386 (472)
T PRK08506 343 IPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYR 386 (472)
T ss_pred CcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEec
Confidence 9999999843111 1111222 4568899999998775
No 61
>PRK05748 replicative DNA helicase; Provisional
Probab=93.52 E-value=0.48 Score=45.36 Aligned_cols=177 Identities=8% Similarity=0.028 Sum_probs=108.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
++|.+++|....+..=+.|..+++.+.. +.+.+ |+++|+.-+..-... .+...+++.... ++|++...|.-.
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~--v~~fSlEms~~~l~~R~l~~~~~v~~~~i-~~~~l~~~e~~~~~ 277 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKN--VAIFSLEMGAESLVMRMLCAEGNIDAQRL-RTGQLTDDDWPKLT 277 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCe--EEEEeCCCCHHHHHHHHHHHhcCCCHHHh-hcCCCCHHHHHHHH
Confidence 5799999999999998999999988764 44444 999999877664322 223345665543 346665544321
Q ss_pred ccCCCCCC-----CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC---C-hHHHHHHHHHHHHhhc
Q 024921 99 LRCPDVDE-----GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG---G-SDYVLDFLHYCHALTS 169 (260)
Q Consensus 99 ~~~~~~~~-----~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~---~-~~~v~~fi~~l~~~~~ 169 (260)
.....+.+ .+...-.+..+...+++...+. .+..+||||-+..+-. .+- . ..++-...+.|+.++.
T Consensus 278 ~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~----~~~~~vvIDyL~li~~-~~~~~~~r~~~i~~i~~~LK~lAk 352 (448)
T PRK05748 278 IAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH----GGLGLILIDYLQLIQG-SGRSGENRQQEVSEISRSLKALAK 352 (448)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc----CCCCEEEEccchhcCC-CCCCCcCHHHHHHHHHHHHHHHHH
Confidence 00000000 0111233556666665544332 1345899999998742 121 1 2456777888999999
Q ss_pred ccCCeEEEEeeccCC------CCCChhHH--HHHcchhcceEEEecc
Q 024921 170 EFDCSLITLNHEDIY------SSMERPTL--ILQMEYLADILIKAEP 208 (260)
Q Consensus 170 ~~~~~lv~l~h~~~~------~~~e~~~l--~~~L~h~a~~~i~l~p 208 (260)
+.++.++++++-.-. ......+| .-.+.+.||+++-+..
T Consensus 353 e~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r 399 (448)
T PRK05748 353 ELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYR 399 (448)
T ss_pred HhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEec
Confidence 999999999984321 11111122 3567889999998854
No 62
>PRK05595 replicative DNA helicase; Provisional
Probab=93.35 E-value=2 Score=41.05 Aligned_cols=177 Identities=12% Similarity=0.102 Sum_probs=108.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHH-hcCCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKR-SLSPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~-~L~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
.+|.+++|....+..=+.+..++..+ +.+.+.+ |+++|+.-+..-... .+...|+++.... +|.+..-|...
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~--vl~fSlEms~~~l~~R~~a~~~~v~~~~~~-~~~l~~~e~~~~~ 275 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKS--VAIFSLEMSKEQLAYKLLCSEANVDMLRLR-TGNLEDKDWENIA 275 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCc--EEEEecCCCHHHHHHHHHHHhcCCCHHHHh-cCCCCHHHHHHHH
Confidence 46899999999999888888888876 4565545 999999876654433 3666788888764 44443222211
Q ss_pred ccCCCCCC-----CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCC--hHHHHHHHHHHHHhhccc
Q 024921 99 LRCPDVDE-----GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGG--SDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 99 ~~~~~~~~-----~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~--~~~v~~fi~~l~~~~~~~ 171 (260)
..+..+.+ .++....+..+...++....+ .+..+||||-+..+...-+.. ..++-...+.|+.++.+.
T Consensus 276 ~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~-----~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~ 350 (444)
T PRK05595 276 RASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE-----HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEM 350 (444)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-----cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 00000000 011223345565555553322 235689999998774211111 245666678889999999
Q ss_pred CCeEEEEeeccCCC----C--CChh--HHHHHcchhcceEEEecc
Q 024921 172 DCSLITLNHEDIYS----S--MERP--TLILQMEYLADILIKAEP 208 (260)
Q Consensus 172 ~~~lv~l~h~~~~~----~--~e~~--~l~~~L~h~a~~~i~l~p 208 (260)
++.|+++++-.-.. + .... +=.-.+.+-||+++-+..
T Consensus 351 ~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r 395 (444)
T PRK05595 351 ECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYR 395 (444)
T ss_pred CCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEec
Confidence 99999998843211 1 1111 223568889999998865
No 63
>PRK08760 replicative DNA helicase; Provisional
Probab=92.84 E-value=3.7 Score=39.78 Aligned_cols=175 Identities=11% Similarity=0.044 Sum_probs=104.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEeecc---
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFDML--- 97 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD~l--- 97 (260)
.+|.+++|....+..=+.+..++..++. +.+.+ |++.|+.-+..-+.. .+...++++.... +|++.-=|..
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~--V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~-~g~l~~~e~~~~~ 303 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKG--VAVFSMEMSASQLAMRLISSNGRINAQRLR-TGALEDEDWARVT 303 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCc--eEEEeccCCHHHHHHHHHHhhCCCcHHHHh-cCCCCHHHHHHHH
Confidence 4799999999999999999999998765 43444 999999877654332 3333467776543 3443211110
Q ss_pred ---cccC-CCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC---ChHHHHHHHHHHHHhhcc
Q 024921 98 ---MLRC-PDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG---GSDYVLDFLHYCHALTSE 170 (260)
Q Consensus 98 ---~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~---~~~~v~~fi~~l~~~~~~ 170 (260)
..+. .++-..+...-.+..+...++....+ .+..+||||-+..+-. -+. ...++....+.|+.++.+
T Consensus 304 ~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~-----~~~~lVvIDyLql~~~-~~~~~~r~~ei~~Isr~LK~lAke 377 (476)
T PRK08760 304 GAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKRE-----HDLGLIVIDYLQLMSV-PGNSENRATEISEISRSLKGLAKE 377 (476)
T ss_pred HHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEecHHhcCC-CCCCcccHHHHHHHHHHHHHHHHH
Confidence 0000 00000011122345565555554332 1345899999986631 121 234566777888999999
Q ss_pred cCCeEEEEeeccCCC----C--CChh--HHHHHcchhcceEEEec
Q 024921 171 FDCSLITLNHEDIYS----S--MERP--TLILQMEYLADILIKAE 207 (260)
Q Consensus 171 ~~~~lv~l~h~~~~~----~--~e~~--~l~~~L~h~a~~~i~l~ 207 (260)
.++.||++++-.-.. + .... +=.-.+.+-||+++-+-
T Consensus 378 l~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~ 422 (476)
T PRK08760 378 LNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIY 422 (476)
T ss_pred hCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEe
Confidence 999999999843111 1 1111 22356788999999883
No 64
>PRK06321 replicative DNA helicase; Provisional
Probab=91.85 E-value=3.6 Score=39.89 Aligned_cols=176 Identities=7% Similarity=0.005 Sum_probs=102.4
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
.+|.+++|....+..-+.+..++..++. +.+. +|+++|+.-+..-... .+...|++..... .|.+.==|.-.
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~--~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~-~~~l~~~e~~~~~ 300 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRL--PVGIFSLEMTVDQLIHRIICSRSEVESKKIS-VGDLSGRDFQRIV 300 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCC--eEEEEeccCCHHHHHHHHHHhhcCCCHHHhh-cCCCCHHHHHHHH
Confidence 5799999999989888888888877754 4443 4999999876654422 3445567765543 22221000000
Q ss_pred ccCCCCCC-----CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC------CChHHHHHHHHHHHHh
Q 024921 99 LRCPDVDE-----GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN------GGSDYVLDFLHYCHAL 167 (260)
Q Consensus 99 ~~~~~~~~-----~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g------~~~~~v~~fi~~l~~~ 167 (260)
.....+.+ .+...-.+..+...++....+ .+--+||||-+..+... + ....++-...+.|+.+
T Consensus 301 ~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-----~~~~lvvIDyLql~~~~-~~~~~~~~r~~ei~~Isr~LK~l 374 (472)
T PRK06321 301 SVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-----YDIQFLIIDYLQLLSGS-GNLRNSESRQTEISEISRMLKNL 374 (472)
T ss_pred HHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEcchHHcCCC-CccCCcchHHHHHHHHHHHHHHH
Confidence 00000000 011122355555555543321 13458999999887421 1 1135677778889999
Q ss_pred hcccCCeEEEEeeccCCC------CCChh--HHHHHcchhcceEEEecc
Q 024921 168 TSEFDCSLITLNHEDIYS------SMERP--TLILQMEYLADILIKAEP 208 (260)
Q Consensus 168 ~~~~~~~lv~l~h~~~~~------~~e~~--~l~~~L~h~a~~~i~l~p 208 (260)
+.+.++.||++++-.-.. ..... +=.-.+.+-||+++-+-.
T Consensus 375 Akel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R 423 (472)
T PRK06321 375 ARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLR 423 (472)
T ss_pred HHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEec
Confidence 999999999999843111 11111 223478889999998843
No 65
>PRK04296 thymidine kinase; Provisional
Probab=90.87 E-value=2.8 Score=35.19 Aligned_cols=154 Identities=11% Similarity=0.139 Sum_probs=89.3
Q ss_pred CcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEE--EeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFV--AFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 26 ~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlv--s~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|.+++++...++.=+=++.+++..+...+.+ |+++ ++.... ....++.++|+++... . + .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~--v~i~k~~~d~~~-~~~~i~~~lg~~~~~~------~-~-------~- 63 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMK--VLVFKPAIDDRY-GEGKVVSRIGLSREAI------P-V-------S- 63 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCe--EEEEeccccccc-cCCcEecCCCCcccce------E-e-------C-
Confidence 6789999988888888888888888776544 8877 333333 2556777888766541 1 1 0
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
....++..+++ . .....+||||.... ++..++..+++.++ ..+..+++.-....
T Consensus 64 ---------~~~~~~~~~~~--~-----~~~~dvviIDEaq~------l~~~~v~~l~~~l~----~~g~~vi~tgl~~~ 117 (190)
T PRK04296 64 ---------SDTDIFELIEE--E-----GEKIDCVLIDEAQF------LDKEQVVQLAEVLD----DLGIPVICYGLDTD 117 (190)
T ss_pred ---------ChHHHHHHHHh--h-----CCCCCEEEEEcccc------CCHHHHHHHHHHHH----HcCCeEEEEecCcc
Confidence 12345555444 1 12456899999943 23345777776653 33334444433322
Q ss_pred CCCCChhHHHHHcchhcceEEEeccCC--CcCccceeEEEEEEec
Q 024921 184 YSSMERPTLILQMEYLADILIKAEPLS--TGLATDVHGQLTVLNK 226 (260)
Q Consensus 184 ~~~~e~~~l~~~L~h~a~~~i~l~pL~--TG~a~DVtG~L~v~~~ 226 (260)
... +.-.-...|...||.++.++..= .| ++.+=..|+..+
T Consensus 118 ~~~-~~f~~~~~L~~~aD~V~~l~~vC~~Cg--~~a~~~~r~~~~ 159 (190)
T PRK04296 118 FRG-EPFEGSPYLLALADKVTELKAICVHCG--RKATMNQRLIDG 159 (190)
T ss_pred ccc-CcCchHHHHHHhcCeEEEeeEEccccC--CccceEEEEeCC
Confidence 211 11112345667899999888643 44 355555555543
No 66
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=1.7 Score=40.21 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=80.3
Q ss_pred hhHHHHHHHHhccccccccCCceEEeeccc---ccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhH
Q 024921 69 SHYDRILRKLGCNLVTQRDNKRFIFFDMLM---LRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISL 145 (260)
Q Consensus 69 ~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~---~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~ 145 (260)
+--++.|+||-+....--.+|++.=|..-+ ..|+. +.+-.+.+|++|++-++. ++.-++|+||..+.
T Consensus 192 SLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE------SgKlV~kmF~kI~ELv~d----~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 192 SLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE------SGKLVAKMFQKIQELVED----RGNLVFVLIDEVES 261 (423)
T ss_pred HHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh------hhhHHHHHHHHHHHHHhC----CCcEEEEEeHHHHH
Confidence 446788889988876655567766555444 23432 134578999999998774 23568899999999
Q ss_pred HHHHc-----CCChHHHHHHHHHHHHh-hc-ccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 146 VEVAA-----NGGSDYVLDFLHYCHAL-TS-EFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 146 Ll~~~-----g~~~~~v~~fi~~l~~~-~~-~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
|-.+- +..+.|-++-+..+... =+ +...+++++.+....+ .+-..+..+||++.-+.|
T Consensus 262 La~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~ 326 (423)
T KOG0744|consen 262 LAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGP 326 (423)
T ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCC
Confidence 96542 33344555555554322 12 3334788888755422 355567788888888765
No 67
>PRK06904 replicative DNA helicase; Validated
Probab=89.77 E-value=11 Score=36.60 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=102.9
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEee-----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFD----- 95 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD----- 95 (260)
.+|.|++|....+..=+.+...+..++. +.+. +|+++|+.-+..-... ++...|++........++.-=|
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~~g~--~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~ 296 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMASEK--PVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKIS 296 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCC--eEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHH
Confidence 4799999999988888888877777665 3343 4999999876655433 4455677776654211221000
Q ss_pred -cccccCCC--CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC---ChHHHHHHHHHHHHhhc
Q 024921 96 -MLMLRCPD--VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG---GSDYVLDFLHYCHALTS 169 (260)
Q Consensus 96 -~l~~~~~~--~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~---~~~~v~~fi~~l~~~~~ 169 (260)
....+... +--.+...-.+..+...++...... .+-.+||||-+.++.. -+. ...++-...+.|+.++.
T Consensus 297 ~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~----~~~~lvvIDYLqli~~-~~~~~~r~~ei~~isr~LK~lAk 371 (472)
T PRK06904 297 STVGMFKQKPNLYIDDSSGLTPTELRSRARRVYREN----GGLSLIMVDYLQLMRA-PGFEDNRTLEIAEISRSLKALAK 371 (472)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC----CCCCEEEEecHHhcCC-CCCCCcHHHHHHHHHHHHHHHHH
Confidence 00000000 0000111223455555555443321 1345899999986642 121 23467777888999999
Q ss_pred ccCCeEEEEeeccCCC----C--CChh--HHHHHcchhcceEEEecc
Q 024921 170 EFDCSLITLNHEDIYS----S--MERP--TLILQMEYLADILIKAEP 208 (260)
Q Consensus 170 ~~~~~lv~l~h~~~~~----~--~e~~--~l~~~L~h~a~~~i~l~p 208 (260)
+.++.||++++-.=.. + .... +=.-.+.+-||+++-+-.
T Consensus 372 el~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R 418 (472)
T PRK06904 372 ELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYR 418 (472)
T ss_pred HhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEec
Confidence 9999999999843111 1 1111 123457889999888764
No 68
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=89.39 E-value=4.4 Score=34.97 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=103.4
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeeccc-ccCCC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLM-LRCPD 103 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~-~~~~~ 103 (260)
.|..+||..+....+.++++.++..+...+.+ |++.-+..+..=|..-++-+|++..-.. +..+|=..- .-.++
T Consensus 10 ~GE~VLVEy~S~~~~el~~~~li~~~~~~~~~--vlI~DilDtl~i~~~~l~~~Gi~~~~l~---~~~VIKiGG~~~~Gn 84 (210)
T PF03192_consen 10 PGETVLVEYSSSSPPELLFYELIKWAREKGYP--VLIDDILDTLHIYKKHLELMGIDTDILD---NIKVIKIGGRIEVGN 84 (210)
T ss_dssp TT-EEEEEE-TTS-THHHHHHHHH---T-SS---BEEEEETTHHHHHHHHHHHTT---HHHH---CSEEEEES-S---SE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhhhcCCC--EEEEEcCCCHHHHHHHHHHcCCCccccc---CceEEEecCeeeeee
Confidence 59999999999999999999999988887766 9999999999999999999999987542 223332221 01111
Q ss_pred C-C--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhh-cccCCeEEEEe
Q 024921 104 V-D--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALT-SEFDCSLITLN 179 (260)
Q Consensus 104 ~-~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~-~~~~~~lv~l~ 179 (260)
. . .....+..+..-|..+.+.+.+ ..+.+.|+=+++-|+..+..++.++..|++.+.... ...+.++..+.
T Consensus 85 Vv~ri~~~~d~~~~~k~Y~~~~~~~~~-----~~~~i~ivlGiekl~~~~~~~~~e~~~~~~~i~~~lg~~~r~a~yfiN 159 (210)
T PF03192_consen 85 VVGRIPITSDPSVYLKEYEEILEKVLE-----KEKVINIVLGIEKLFYFFENSPRELILFFNSISRFLGNERRIAFYFIN 159 (210)
T ss_dssp EEEEE-----BBTTBHHHHHHHTT--------S-SEEEEEE-HHHHH-HH-S-HHHHHHHHHHHHCCTT-TTEEEEEEEE
T ss_pred EEEEEecccChHHHHHHHHHHHHHHhc-----cCCeEEEEecHHHHHHHHhccHHHHHHHHHHHHHhcCCCceEEEEEEc
Confidence 0 0 0011122233344333222221 245888888999998655678888888888775543 22223454444
Q ss_pred eccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCC
Q 024921 180 HEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTS 229 (260)
Q Consensus 180 h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~ 229 (260)
.+-.. ......+..|...|..+++++.= | -...++|.+-.+.
T Consensus 160 ~dvl~--~~~~~~l~~LEeiattVi~i~~~--~----~~~~~~v~Ks~~~ 201 (210)
T PF03192_consen 160 RDVLE--KISPEVLPLLEEIATTVIEIEKE--G----KKLKFRVKKSPNP 201 (210)
T ss_dssp HHHHH--HHHHHHHHHHHHHSSEEEEEETT--E--------EEEEE-SST
T ss_pred hHHhc--ccCchHHHHHHHHhhheEEEecC--C----ceEEEEEEeCCCh
Confidence 33221 12335788999999999999842 1 2235777776553
No 69
>PRK05636 replicative DNA helicase; Provisional
Probab=89.25 E-value=11 Score=37.00 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=105.2
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhH--HHHHHHHhccccccccCCceEEee-----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHY--DRILRKLGCNLVTQRDNKRFIFFD----- 95 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy--~~~~~KlG~nL~~~~~~g~~~fvD----- 95 (260)
.+|.+++|....+..-+.|...+..++. +.+. +|++.|+.-+..-+ +-.+...|+++.... +|++.-=|
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~--~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~-~g~l~~~e~~~~~ 339 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNK--ASVIFSLEMSKSEIVMRLLSAEAEVRLSDMR-GGKMDEDAWEKLV 339 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEEeeCCHHHHHHHHHHHhcCCCHHHHh-cCCCCHHHHHHHH
Confidence 4699999999989988888888887654 4443 49999988765433 445556678776643 34332111
Q ss_pred -cccccCCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-C-ChHHHHHHHHHHHHhhcc
Q 024921 96 -MLMLRCPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-G-GSDYVLDFLHYCHALTSE 170 (260)
Q Consensus 96 -~l~~~~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~-~~~~v~~fi~~l~~~~~~ 170 (260)
....+ ...+ -.+...-.+..+...++....+ .+--+||||-+..+-.... - ...++-...+.|+.++.+
T Consensus 340 ~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~~~~~-----~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke 413 (505)
T PRK05636 340 QRLGKI-AQAPIFIDDSANLTMMEIRSKARRLKQK-----HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKE 413 (505)
T ss_pred HHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHh-----cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 11000 0000 0011122345555555543222 1345899999997742111 1 134677788899999999
Q ss_pred cCCeEEEEeeccCCC----C--CChhHH--HHHcchhcceEEEecc
Q 024921 171 FDCSLITLNHEDIYS----S--MERPTL--ILQMEYLADILIKAEP 208 (260)
Q Consensus 171 ~~~~lv~l~h~~~~~----~--~e~~~l--~~~L~h~a~~~i~l~p 208 (260)
.++.||++++-.-.. + ....+| .-.+.+.||+++-+-.
T Consensus 414 l~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R 459 (505)
T PRK05636 414 LDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYR 459 (505)
T ss_pred hCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEec
Confidence 999999999843111 1 111112 2368899999998865
No 70
>PRK07773 replicative DNA helicase; Validated
Probab=89.02 E-value=1.4 Score=46.06 Aligned_cols=153 Identities=8% Similarity=0.051 Sum_probs=96.0
Q ss_pred CCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHH--HHHHHHhccccccccCCceEEeeccc--
Q 024921 23 PLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYD--RILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 23 ~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~--~~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
.++|.+++|....+..=+.+..++..+..... +.+|+++|+.-+..-.. ..+...++++... ++|++...|.-.
T Consensus 214 l~~G~livIagrPg~GKT~fal~ia~~~a~~~-~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i-~~g~l~~~~~~~~~ 291 (886)
T PRK07773 214 LHPGQLIIVAARPSMGKTTFGLDFARNCAIRH-RLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDM-RSGRMSDDDWTRLA 291 (886)
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCCCHHHHHHHHHHHhcCCCHHHH-hcCCCCHHHHHHHH
Confidence 35799999999999988888888888765432 23499999987665432 2334467777665 356665444211
Q ss_pred cc---CCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CCChHHHHHHHHHHHHhhccc
Q 024921 99 LR---CPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NGGSDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 99 ~~---~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~~~~~v~~fi~~l~~~~~~~ 171 (260)
.. ....+ ..+...-.+..+...++....+. +-.+||||-+..+...- .....++..+.+.|+.++.+.
T Consensus 292 ~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~-----~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel 366 (886)
T PRK07773 292 RAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEA-----NLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKEL 366 (886)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-----CCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00111234566666666554421 34589999999764110 011346788888999999999
Q ss_pred CCeEEEEeecc
Q 024921 172 DCSLITLNHED 182 (260)
Q Consensus 172 ~~~lv~l~h~~ 182 (260)
++.+|++++-.
T Consensus 367 ~vpvi~lsQLn 377 (886)
T PRK07773 367 EVPVVALSQLS 377 (886)
T ss_pred CCcEEEecccC
Confidence 99999998843
No 71
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=88.69 E-value=11 Score=31.54 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=54.5
Q ss_pred CcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEe-ccCchhHHHHHHHHhccccccccCCceEEeeccc
Q 024921 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAF-ANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLM 98 (260)
Q Consensus 26 ~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~-~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~ 98 (260)
.++..+-+ ....=--.+..|+..-|..+.+ |++|.- ..+.+.-...++|.|+++..+.++||+.|+|.-.
T Consensus 20 ~H~c~~Y~-~~~e~~~~~~~Fi~~GL~~ge~--~l~v~~~~~~~~~l~~~L~~~~~d~~~~~~~gqL~~~~~~~ 90 (191)
T PF14417_consen 20 DHICAFYD-DEEELLEVLVPFIREGLARGER--CLYVAPDPRRVEELRDELRKAGPDVEQYLDSGQLELLDAEE 90 (191)
T ss_pred ceEEEEEC-CHHHHHHHHHHHHHHHHHCCCe--EEEEECCCCCHHHHHHHHHhcCCchhhcccCCCEEEecchh
Confidence 44444444 2444444577788888888776 888887 7888899999999999999999999999999754
No 72
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=87.51 E-value=27 Score=33.36 Aligned_cols=199 Identities=11% Similarity=0.079 Sum_probs=116.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEeecccccC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFDMLMLRC 101 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD~l~~~~ 101 (260)
..|+..||...-||.-+-|-..++.. +++... |..+|..-+.+--.. -.-|-.+| +-.+||...+.+
T Consensus 8 ~~G~TLLIKG~PGTGKTtfaLelL~~-l~~~~~--v~YISTRVd~d~vy~~y~~~~~~i~--------~~~vlDatQd~~ 76 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKTTFALELLNS-LKDHGN--VMYISTRVDQDTVYEMYPWIEESID--------PTNVLDATQDPF 76 (484)
T ss_pred CCCcEEEEecCCCCCceeeehhhHHH-HhccCC--eEEEEeccCHHHHHHhhhhhccccC--------hhhhhhhccchh
Confidence 36899999999999988888888876 444444 899998755432221 11122222 114566666544
Q ss_pred CCC-CCCCCC-CcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC---CChHHHHHHHHHHHHhhcccCCeEE
Q 024921 102 PDV-DEGKSS-EGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN---GGSDYVLDFLHYCHALTSEFDCSLI 176 (260)
Q Consensus 102 ~~~-~~~~~~-~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g---~~~~~v~~fi~~l~~~~~~~~~~lv 176 (260)
.-. ...-+. ...+..+++.+++ +.. ...+.+|++|.-+.+...++ ..+.++..+...|.++|++.+..+|
T Consensus 77 ~~~~~~~vp~~~l~~ds~~~f~~~-i~~----~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~LI 151 (484)
T PF07088_consen 77 ELPLDKDVPFERLDIDSFRDFVDK-INE----AGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINLI 151 (484)
T ss_pred hccccccCcccccCHHHHHHHHHH-hhh----cccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceEE
Confidence 310 000011 1234555555553 222 13678999999666654331 2234577777788788888888887
Q ss_pred EEeeccCCCCCChhHHHHHcchhcceEEEec--cCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEe
Q 024921 177 TLNHEDIYSSMERPTLILQMEYLADILIKAE--PLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYF 254 (260)
Q Consensus 177 ~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~--pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F 254 (260)
.+.-..... .|.+.+|=|++++ +=.-||-. =+|++.+-. .+....+.|.|-+.++..++|
T Consensus 152 lVsEsa~~~---------~LdYivDGVVTL~v~~derGR~~---R~L~LeKLR------GV~I~q~~Y~fTL~nGrF~~f 213 (484)
T PF07088_consen 152 LVSESAENE---------PLDYIVDGVVTLQVKNDERGRTR---RYLRLEKLR------GVRIKQRLYPFTLANGRFRSF 213 (484)
T ss_pred EEEecCCCC---------cchheeeeEEEEEeccccCCceE---EEEEehhhc------CcccCCccceEEeeCCEEEEe
Confidence 776433221 2789999999883 11112211 233333311 223355679999999999999
Q ss_pred eC
Q 024921 255 YP 256 (260)
Q Consensus 255 ~r 256 (260)
.|
T Consensus 214 ~p 215 (484)
T PF07088_consen 214 TP 215 (484)
T ss_pred cc
Confidence 76
No 73
>PRK08840 replicative DNA helicase; Provisional
Probab=86.82 E-value=19 Score=34.76 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=101.5
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHh-cCCCCCCeEEEEEeccCchhH--HHHHHHHhccccccccCCceEEeec----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRS-LSPTSSNVIIFVAFANPFSHY--DRILRKLGCNLVTQRDNKRFIFFDM---- 96 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~-L~~~~~~~Vvlvs~~~~~~hy--~~~~~KlG~nL~~~~~~g~~~fvD~---- 96 (260)
.+|.+++|....+..=+-+...+..++ .+.+ .+|++.|+.-+.... +-.+...|++..... .|++.==|.
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~-~~~l~~~e~~~~~ 291 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPAEQLMMRMLASLSRVDQTKIR-TGQLDDEDWARIS 291 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHHHhhCCCCHHHHh-cCCCCHHHHHHHH
Confidence 468999999987766666666665554 4443 349999999776655 334556677776653 333210000
Q ss_pred --ccccCCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC---ChHHHHHHHHHHHHhhc
Q 024921 97 --LMLRCPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG---GSDYVLDFLHYCHALTS 169 (260)
Q Consensus 97 --l~~~~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~---~~~~v~~fi~~l~~~~~ 169 (260)
...+....+ -.+...-.+..+...+++...+. .+-.+||||-+..+.. -+. ...++-...+.|+.++.
T Consensus 292 ~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~----~~~~lvvIDYLql~~~-~~~~~~r~~ei~~isr~LK~lAk 366 (464)
T PRK08840 292 STMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREH----GGLSMIMVDYLQLMRV-PALSDNRTLEIAEISRSLKALAK 366 (464)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc----CCCCEEEEccHHhcCC-CCCCCchHHHHHHHHHHHHHHHH
Confidence 000000000 00111223455555554443221 1245899999887631 121 13457777888999999
Q ss_pred ccCCeEEEEeeccCCC----C--CChh--HHHHHcchhcceEEEecc
Q 024921 170 EFDCSLITLNHEDIYS----S--MERP--TLILQMEYLADILIKAEP 208 (260)
Q Consensus 170 ~~~~~lv~l~h~~~~~----~--~e~~--~l~~~L~h~a~~~i~l~p 208 (260)
+.++.||++++-.-.. + .... +=.-.+.+.||+++-+.+
T Consensus 367 el~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R 413 (464)
T PRK08840 367 ELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR 413 (464)
T ss_pred HhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEec
Confidence 9999999999843111 1 1111 123457889999998765
No 74
>PRK07004 replicative DNA helicase; Provisional
Probab=85.01 E-value=23 Score=34.21 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=101.2
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHh-cCCCCCCeEEEEEeccCchhH-HH-HHHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRS-LSPTSSNVIIFVAFANPFSHY-DR-ILRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~-L~~~~~~~Vvlvs~~~~~~hy-~~-~~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
++|.+++|....+..-+-+...+..+. ++.+.+ |++.|+.-+..-. .. .+...+++..... +|++.--|.-.
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~--v~~fSlEM~~~ql~~R~la~~~~v~~~~i~-~g~l~~~e~~~~~ 287 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLP--VAVFSMEMPGTQLAMRMLGSVGRLDQHRMR-TGRLTDEDWPKLT 287 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCe--EEEEeCCCCHHHHHHHHHHhhcCCCHHHHh-cCCCCHHHHHHHH
Confidence 579999999998988888888888765 444444 9999988655432 22 2344466665543 33322111100
Q ss_pred cc---CCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-CC-ChHHHHHHHHHHHHhhccc
Q 024921 99 LR---CPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-NG-GSDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 99 ~~---~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g~-~~~~v~~fi~~l~~~~~~~ 171 (260)
.. ....+ -.+...-.+..+...+++...+. +...+||||-+..+.... +. ...++....+.|+.++...
T Consensus 288 ~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~----~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel 363 (460)
T PRK07004 288 HAVQKMSEAQLFIDETGGLNPMELRSRARRLARQC----GKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL 363 (460)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhC----CCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 00 00000 00111122344544444432221 134689999998885211 11 2335666778889999999
Q ss_pred CCeEEEEeeccCC------CCCChh--HHHHHcchhcceEEEecc
Q 024921 172 DCSLITLNHEDIY------SSMERP--TLILQMEYLADILIKAEP 208 (260)
Q Consensus 172 ~~~lv~l~h~~~~------~~~e~~--~l~~~L~h~a~~~i~l~p 208 (260)
+|.|+++++-.-. ...... +=.-.+.+-||+++-+-.
T Consensus 364 ~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R 408 (460)
T PRK07004 364 DVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYR 408 (460)
T ss_pred CCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEecc
Confidence 9999999983311 111111 224567899999998754
No 75
>PRK08006 replicative DNA helicase; Provisional
Probab=83.76 E-value=40 Score=32.69 Aligned_cols=178 Identities=11% Similarity=0.061 Sum_probs=100.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHH-hcCCCCCCeEEEEEeccCchhHH--HHHHHHhccccccccCCceEEeec----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKR-SLSPTSSNVIIFVAFANPFSHYD--RILRKLGCNLVTQRDNKRFIFFDM---- 96 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~-~L~~~~~~~Vvlvs~~~~~~hy~--~~~~KlG~nL~~~~~~g~~~fvD~---- 96 (260)
.+|.|++|....+..=+=+...+..+ +.+.+ .+|++.|+.-+..... -.+...|+++.... +|++.-=|.
T Consensus 222 ~~G~LiiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~-~~~l~~~e~~~~~ 298 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPGEQIMMRMLASLSRVDQTRIR-TGQLDDEDWARIS 298 (471)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHHhcCCCHHHhh-cCCCCHHHHHHHH
Confidence 46999999998776655555555555 44544 3499999987665443 23444567766543 333321111
Q ss_pred --ccccCCCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CCChHHHHHHHHHHHHhhcc
Q 024921 97 --LMLRCPDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NGGSDYVLDFLHYCHALTSE 170 (260)
Q Consensus 97 --l~~~~~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~~~~~v~~fi~~l~~~~~~ 170 (260)
...+....+ -.+...-.+..+...+++...+. ++-.+||||=+-++...- +-...++-...+.|+.++.+
T Consensus 299 ~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~----~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 374 (471)
T PRK08006 299 GTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREH----GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE 374 (471)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc----CCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 000000000 00111223455555555543322 134589999999764210 11244677778889999999
Q ss_pred cCCeEEEEeeccCCC----C--C--ChhHHHHHcchhcceEEEecc
Q 024921 171 FDCSLITLNHEDIYS----S--M--ERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 171 ~~~~lv~l~h~~~~~----~--~--e~~~l~~~L~h~a~~~i~l~p 208 (260)
.++.||++++-.-.. + . .+-+=.-.+..-||+++-+-.
T Consensus 375 l~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R 420 (471)
T PRK08006 375 LQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR 420 (471)
T ss_pred hCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEec
Confidence 999999999833111 1 1 111224457889999998864
No 76
>PRK06749 replicative DNA helicase; Provisional
Probab=81.42 E-value=51 Score=31.49 Aligned_cols=180 Identities=9% Similarity=0.015 Sum_probs=102.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhH--HHHHHHHhccccccccC-CceEEeec--cc
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHY--DRILRKLGCNLVTQRDN-KRFIFFDM--LM 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy--~~~~~KlG~nL~~~~~~-g~~~fvD~--l~ 98 (260)
.+|.|++|....+..=+.+...+..++.+.+.+ |++.|+.-+..-. +-.+...+++.....+. +.+.--|. +.
T Consensus 184 ~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~--v~~fSlEMs~~ql~~R~ls~~~~i~~~~l~~~~~~l~~~e~~~~~ 261 (428)
T PRK06749 184 QEGDFVVLGARPSMGKTAFALNVGLHAAKSGAA--VGLFSLEMSSKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVS 261 (428)
T ss_pred CCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCC--EEEEEeeCCHHHHHHHHHHhccCCCHHHHhcCcccCCHHHHHHHH
Confidence 468999999988888888888888877765444 9999988655432 22334456776665431 12210011 00
Q ss_pred ccC---CCCC--CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc---CCChHHHHHHHHHHHHhhcc
Q 024921 99 LRC---PDVD--EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA---NGGSDYVLDFLHYCHALTSE 170 (260)
Q Consensus 99 ~~~---~~~~--~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~---g~~~~~v~~fi~~l~~~~~~ 170 (260)
..+ .+.+ ..+.....+..+...++....+.. ....+||||-+..+.... +....++....+.|+.++.+
T Consensus 262 ~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~---~~~~lvvIDyLqli~~~~~~~~~r~~ei~~isr~LK~lAke 338 (428)
T PRK06749 262 KAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHG---DKKILIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLARE 338 (428)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcC---CCCcEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 0000 011222234555555544333211 123489999998764211 11234566777889999999
Q ss_pred cCCeEEEEeeccCCC----C--CChhH--HHHHcchhcceEEEecc
Q 024921 171 FDCSLITLNHEDIYS----S--MERPT--LILQMEYLADILIKAEP 208 (260)
Q Consensus 171 ~~~~lv~l~h~~~~~----~--~e~~~--l~~~L~h~a~~~i~l~p 208 (260)
.+|.||++++-.-.. + +...+ =.-.+.+.||+++-+..
T Consensus 339 l~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R 384 (428)
T PRK06749 339 LNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYR 384 (428)
T ss_pred hCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEee
Confidence 999999998833111 1 11112 23468889999998765
No 77
>PF14516 AAA_35: AAA-like domain
Probab=79.34 E-value=19 Score=33.01 Aligned_cols=120 Identities=10% Similarity=0.081 Sum_probs=71.3
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccC--------chhHHHHHHHHhccccccccCCceEEeec
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANP--------FSHYDRILRKLGCNLVTQRDNKRFIFFDM 96 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~--------~~hy~~~~~KlG~nL~~~~~~g~~~fvD~ 96 (260)
+|+++.|.....+.=+.|++++++..-+.+.. ++.++|..- ..||+..|.+++-.|.-. .++ =+.
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~--~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~---~~l--~~~ 102 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYR--CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLD---EKL--DEY 102 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCE--EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCC---hhH--HHH
Confidence 48999999999999999999999988877666 899988751 126666666654443211 000 000
Q ss_pred ccccCCCCCCCCCCCcchHHHHHHHHHHh-cCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHH
Q 024921 97 LMLRCPDVDEGKSSEGGLVLLYEKILKTI-CGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHA 166 (260)
Q Consensus 97 l~~~~~~~~~~~~~~~~l~~L~~~I~~~l-~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~ 166 (260)
-..... ....+...+++.+ +.. ..+.+++||.++.++.. .....+...+++.++.
T Consensus 103 w~~~~~----------~~~~~~~~~~~~ll~~~----~~~lVL~iDEiD~l~~~-~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 103 WDEEIG----------SKISCTEYFEEYLLKQI----DKPLVLFIDEIDRLFEY-PQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHhcC----------ChhhHHHHHHHHHHhcC----CCCEEEEEechhhhccC-cchHHHHHHHHHHHHH
Confidence 000000 1112223333332 222 37899999999998732 1223455666666554
No 78
>PF05729 NACHT: NACHT domain
Probab=78.48 E-value=30 Score=27.05 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.5
Q ss_pred cEEEEeecCCCCccHHHHHHHHHhcCCCC
Q 024921 27 RVVLIEDCVETSGSFVLHQLVKRSLSPTS 55 (260)
Q Consensus 27 ~l~litd~~~t~~sfLl~~~l~~~L~~~~ 55 (260)
++++|+...|+.=|.++.++......+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 46888998999999999999988887664
No 79
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=77.26 E-value=32 Score=30.65 Aligned_cols=163 Identities=16% Similarity=0.142 Sum_probs=91.2
Q ss_pred CCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeeccccc-C
Q 024921 23 PLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLR-C 101 (260)
Q Consensus 23 ~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~-~ 101 (260)
.|+|+++.|-.-.|+.=|=|+..+.. .++-..+ .|.+=.-.=..--.+..+|++|+=.........+++.|.-..- +
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g-~l~p~~G-~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAG-LLKPKSG-EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhc-cCCCCCC-EEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 34799999999888888887666544 4553333 1333322222223457899999876766667778888876621 1
Q ss_pred --CCCCCCCCCCcchHHHHHHHHHHhc-------------CCCCC-----------CCCcEEEEEeChhHHHHHcCCChH
Q 024921 102 --PDVDEGKSSEGGLVLLYEKILKTIC-------------GLPGD-----------KKDYVTIMIDDISLVEVAANGGSD 155 (260)
Q Consensus 102 --~~~~~~~~~~~~l~~L~~~I~~~l~-------------~~~~~-----------~~~~~~iIiDdl~~Ll~~~g~~~~ 155 (260)
.+. -+.....+.+ .+..+++ .++|. .+.+.++++|.|...+.. -...
T Consensus 103 p~~~~-~~~~~~~D~~----~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi--~~Q~ 175 (258)
T COG1120 103 PHLGL-FGRPSKEDEE----IVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI--AHQI 175 (258)
T ss_pred ccccc-ccCCCHhHHH----HHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH--HHHH
Confidence 110 0001111111 1212221 11211 135789999999988753 1224
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
++++.++ .+..+.+.++|+..|+- +.-...||-+|-++.
T Consensus 176 evl~ll~---~l~~~~~~tvv~vlHDl-----------N~A~ryad~~i~lk~ 214 (258)
T COG1120 176 EVLELLR---DLNREKGLTVVMVLHDL-----------NLAARYADHLILLKD 214 (258)
T ss_pred HHHHHHH---HHHHhcCCEEEEEecCH-----------HHHHHhCCEEEEEEC
Confidence 5555554 44445667888888854 223456777777764
No 80
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=76.16 E-value=46 Score=29.02 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCc---hhHHHHHHHHhccccccccCCceEEeeccccc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPF---SHYDRILRKLGCNLVTQRDNKRFIFFDMLMLR 100 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~---~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~ 100 (260)
+.+.+.|..-.|..=+.|..++....- +... ..|+++.+.... ..+..+++++|......
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------------- 81 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--------------- 81 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-SCCHHHHHHHHHHHTCC-STS---------------
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccccccc-cccccccccccccccccccccccccccccccc---------------
Confidence 578999999999999999999886633 3332 358999988654 35666777777664331
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHH
Q 024921 101 CPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVE 147 (260)
Q Consensus 101 ~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll 147 (260)
. .+.....+.+.|.+.+.. .+.+||+||+....
T Consensus 82 -~-------~~~~~~~~~~~l~~~L~~------~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 82 -S-------DPKDIEELQDQLRELLKD------KRCLLVLDDVWDEE 114 (287)
T ss_dssp -S-------CCSSHHHHHHHHHHHHCC------TSEEEEEEEE-SHH
T ss_pred -c-------cccccccccccchhhhcc------ccceeeeeeecccc
Confidence 0 123345566777777652 58999999987665
No 81
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=71.59 E-value=24 Score=33.26 Aligned_cols=177 Identities=11% Similarity=0.149 Sum_probs=92.1
Q ss_pred CCCcEEEEeecCCCC-ccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHH--HhccccccccCCceEEeeccccc
Q 024921 24 LSGRVVLIEDCVETS-GSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRK--LGCNLVTQRDNKRFIFFDMLMLR 100 (260)
Q Consensus 24 ~~~~l~litd~~~t~-~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~K--lG~nL~~~~~~g~~~fvD~l~~~ 100 (260)
.+|.++++|.-.|+. .+|+--.-|.-+. ++-. ..+.||.=.-.....++-. .|+.+..- +.=.+--.+-
T Consensus 271 R~GElTvlTGpTGsGKTTFlsEYsLDL~~-QGVn--TLwgSFEi~n~rla~~mL~Qyagyrl~dr-----l~~y~HWadr 342 (514)
T KOG2373|consen 271 RPGELTVLTGPTGSGKTTFLSEYSLDLFT-QGVN--TLWGSFEIPNKRLAHWMLVQYAGYRLLDR-----LNSYKHWADR 342 (514)
T ss_pred CCCceEEEecCCCCCceeEehHhhHHHHh-hhhh--heeeeeecchHHHHHHHHHHHccCchHhh-----hhhhhHHHHH
Confidence 468999999854444 4555444444333 3333 7888887544433333322 34444321 1111111111
Q ss_pred CCCCCC---CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChH------HHHHHHHHHHHhhccc
Q 024921 101 CPDVDE---GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSD------YVLDFLHYCHALTSEF 171 (260)
Q Consensus 101 ~~~~~~---~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~------~v~~fi~~l~~~~~~~ 171 (260)
|...+. .-.+...++...+.|+.++--. .=.-||||++-.+. |.+.. +--.+|-+.|+++.+.
T Consensus 343 FErlplyfmtfhgqq~~~~vi~~i~ha~yV~-----di~HViIDNLQFmm---g~~~~~~Drf~~QD~iig~fR~fAT~n 414 (514)
T KOG2373|consen 343 FERLPLYFMTFHGQQFMEKVINEIAHAIYVE-----DIQHVIIDNLQFMM---GQGMMALDRFHLQDRIIGYFRQFATQN 414 (514)
T ss_pred HhccchHhhhhcccchHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHh---ccchhccchhhhHHHHHHHHHHHhhcc
Confidence 111100 0012455677777776664321 11238999998875 33311 1245677889998888
Q ss_pred CCeEEEEeec---cCCCCCChhHHH--HHcchhcceE--EEeccCCCcCccc
Q 024921 172 DCSLITLNHE---DIYSSMERPTLI--LQMEYLADIL--IKAEPLSTGLATD 216 (260)
Q Consensus 172 ~~~lv~l~h~---~~~~~~e~~~l~--~~L~h~a~~~--i~l~pL~TG~a~D 216 (260)
+|.|-.++|- |...|.+...|. ....+.||=| |+=+.|.+|++|-
T Consensus 415 n~HvTlVvHPRKed~d~El~t~s~fGsAkatQEADNVliiQdkrl~~~rgkk 466 (514)
T KOG2373|consen 415 NIHVTLVVHPRKEDGDTELDTQSFFGSAKATQEADNVLIIQDKRLDRDRGKK 466 (514)
T ss_pred ceeEEEEecccccCCCceeeehhhccccccccccccEEEEeecccccccchh
Confidence 8888888882 322221222232 3345667754 4556788888754
No 82
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.44 E-value=47 Score=27.45 Aligned_cols=41 Identities=7% Similarity=0.207 Sum_probs=29.3
Q ss_pred CcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCc
Q 024921 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPF 68 (260)
Q Consensus 26 ~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~ 68 (260)
.+.++|....++.=+.|+.+++...-..+.. ++++...+..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~--~~y~~~~~~~ 60 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYK--VVYIDFLEES 60 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EEC--CCHHCCTTBS
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc--EEEEecccch
Confidence 5789999999999999999999977433333 5666554443
No 83
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=64.07 E-value=25 Score=31.40 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEec
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFA 65 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~ 65 (260)
.+..+-|...=|+.=|+++..+.+ .++.....+..++-|.
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~-~L~~~~~~~~~~i~fn 58 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKE-ELKEDNKEKYIFIYFN 58 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHhcccccceeeEEEc
Confidence 568889999999999999987554 4554422224444443
No 84
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=60.13 E-value=34 Score=33.29 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=55.9
Q ss_pred EEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEE
Q 024921 59 IIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTI 138 (260)
Q Consensus 59 Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~i 138 (260)
.-++...+...--...++++|+++... ..|.-++. + .++=. +|.++|-. +.-++
T Consensus 109 ~~~~~~~~~~~~i~~l~~~yGl~vdp~------~~V~dLsV---G----------~qQRV-EIlKaLyr------~a~iL 162 (501)
T COG3845 109 GGLIDRRQARARIKELSERYGLPVDPD------AKVADLSV---G----------EQQRV-EILKALYR------GARLL 162 (501)
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCCcc------ceeecCCc---c----------hhHHH-HHHHHHhc------CCCEE
Confidence 344555566677777888899988764 23333331 1 11111 22233321 45689
Q ss_pred EEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEee
Q 024921 139 MIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNH 180 (260)
Q Consensus 139 IiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h 180 (260)
|+|.|+..+ ++.|+-.|+.-++.+.. ...+||.++|
T Consensus 163 ILDEPTaVL-----TP~E~~~lf~~l~~l~~-~G~tIi~ITH 198 (501)
T COG3845 163 ILDEPTAVL-----TPQEADELFEILRRLAA-EGKTIIFITH 198 (501)
T ss_pred EEcCCcccC-----CHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 999998765 67899888888887744 3357888887
No 85
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=59.16 E-value=1.5e+02 Score=27.33 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=57.2
Q ss_pred EEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccC---chhHHHHHHHHhccccccccCCceEEeecccccCCCC
Q 024921 28 VVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANP---FSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDV 104 (260)
Q Consensus 28 l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~---~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~ 104 (260)
.++|....|+.=+.++.+++...-....+..++.+.+... ...|..++++++-. . .
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~----------------~-----~ 115 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH----------------P-----P 115 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC----------------C-----C
Confidence 4688888899999999988887654433344666665533 34555555555310 0 0
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHH
Q 024921 105 DEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVE 147 (260)
Q Consensus 105 ~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll 147 (260)
+. .......+++.+.+.+... ....+||||+++.|.
T Consensus 116 ~~---~~~~~~~~~~~~~~~l~~~----~~~~viviDE~d~l~ 151 (394)
T PRK00411 116 PS---SGLSFDELFDKIAEYLDER----DRVLIVALDDINYLF 151 (394)
T ss_pred CC---CCCCHHHHHHHHHHHHHhc----CCEEEEEECCHhHhh
Confidence 00 0113556777776666532 256899999999886
No 86
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=56.06 E-value=30 Score=27.95 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=29.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++++|+|. .|.++.+...+...+.....+ ++.+++..|..
T Consensus 99 ~~~llllDEp~-----~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEID-----RGLDPRDGQALAEAILEHLVK-GAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 56799999997 366767766676666655434 56677766644
No 87
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=53.16 E-value=76 Score=26.46 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCeEEEEEeccCchhHHH--HHHHHh-ccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCC
Q 024921 56 SNVIIFVAFANPFSHYDR--ILRKLG-CNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDK 132 (260)
Q Consensus 56 ~~~Vvlvs~~~~~~hy~~--~~~KlG-~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~ 132 (260)
+.||+++=|+-+..+|-. .+++++ +.+.++ |+ .|+..... ++.. ....+..++..++.+..
T Consensus 31 G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~---g~-~f~~~~~~------~~~~-~~~~~~~~~~a~~~i~~----- 94 (172)
T PF02572_consen 31 GMRVLIVQFLKGGRYSGELKALKKLPNVEIERF---GK-GFVWRMNE------EEED-RAAAREGLEEAKEAISS----- 94 (172)
T ss_dssp T--EEEEESS--SS--HHHHHHGGGT--EEEE-----T-T----GGG------HHHH-HHHHHHHHHHHHHHTT------
T ss_pred CCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEc---CC-cccccCCC------cHHH-HHHHHHHHHHHHHHHhC-----
Confidence 346999999988555433 344554 333222 22 22222221 0000 12234455555555542
Q ss_pred CCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCc
Q 024921 133 KDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTG 212 (260)
Q Consensus 133 ~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG 212 (260)
...-+||+|.+...+..-=++..++++|+..- ....=|++.--.. ...|...||++=.+++...-
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r------p~~~evVlTGR~~---------~~~l~e~ADlVTem~~vKHp 159 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENR------PESLEVVLTGRNA---------PEELIEAADLVTEMREVKHP 159 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-------TT-EEEEE-SS-----------HHHHHH-SEEEEEEECE-C
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcC------CCCeEEEEECCCC---------CHHHHHhCCeeeeeceecCc
Confidence 24668999999999864227788888888521 1122223332232 22367789999999888777
Q ss_pred Cccce
Q 024921 213 LATDV 217 (260)
Q Consensus 213 ~a~DV 217 (260)
+.+-|
T Consensus 160 ~~~Gi 164 (172)
T PF02572_consen 160 YDKGI 164 (172)
T ss_dssp CCCTB
T ss_pred cccCC
Confidence 65533
No 88
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=52.67 E-value=29 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=26.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .++++++..|..
T Consensus 167 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~ 209 (224)
T TIGR02324 167 DYPILLLDEPTA-----SLDAANRQVVVELIAEAKA-RGAALIGIFHDE 209 (224)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 467999999974 4454444455555555433 356788888763
No 89
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=52.10 E-value=1.4e+02 Score=24.91 Aligned_cols=155 Identities=9% Similarity=0.112 Sum_probs=85.8
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHH--HHHHHHhccccccccCCceEEeecccccCC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYD--RILRKLGCNLVTQRDNKRFIFFDMLMLRCP 102 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~--~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~ 102 (260)
.|-+.+.+.. +..-+-....+.-.+...+.+ |+++=|+-....|- +..+++++.+..... .|.|.. .
T Consensus 5 ~Gli~v~~g~-GkGKtt~a~g~a~ra~~~g~~--v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~--g~~~~~------~ 73 (173)
T TIGR00708 5 RGIIIVHTGN-GKGKTTAAFGMALRALGHGKK--VGVIQFIKGAWPNGERAAFEPHGVEFQVMGT--GFTWET------Q 73 (173)
T ss_pred ccEEEEECCC-CCChHHHHHHHHHHHHHCCCe--EEEEEEecCCcccChHHHHHhcCcEEEECCC--CCeecC------C
Confidence 4556666664 555555555555555655544 99999997653332 355666555554322 122111 0
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 103 DVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 103 ~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
+........+..++..++.+.. ...-+||+|.+...+. .| ++..+|++++..- ..+..||+.= -
T Consensus 74 ---~~~~~~~~~~~~~~~a~~~l~~-----~~~DlvVLDEi~~A~~-~gli~~~~v~~lL~~r-----p~~~evVlTG-R 138 (173)
T TIGR00708 74 ---NREADTAIAKAAWQHAKEMLAD-----PELDLVLLDELTYALK-YGYLDVEEVVEALQER-----PGHQHVIITG-R 138 (173)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHhc-----CCCCEEEehhhHHHHH-CCCcCHHHHHHHHHhC-----CCCCEEEEEC-C
Confidence 1000012234455555565542 2456899999999885 45 6788888877421 1222333332 2
Q ss_pred cCCCCCChhHHHHHcchhcceEEEeccCCCcCc
Q 024921 182 DIYSSMERPTLILQMEYLADILIKAEPLSTGLA 214 (260)
Q Consensus 182 ~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a 214 (260)
..+. .|..+||+|=.+++...-+-
T Consensus 139 ~~p~---------~l~e~AD~VTEm~~vKHp~~ 162 (173)
T TIGR00708 139 GCPQ---------DLLELADLVTEMRPVKHPFD 162 (173)
T ss_pred CCCH---------HHHHhCceeeeeccccCchh
Confidence 3322 26678888888887666553
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=49.65 E-value=1.3e+02 Score=25.72 Aligned_cols=38 Identities=3% Similarity=0.162 Sum_probs=22.5
Q ss_pred EEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEec
Q 024921 28 VVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFA 65 (260)
Q Consensus 28 l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~ 65 (260)
.++|....|+.=+-|++++...+.+...+.+|+.++..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 35666666777777777776666654333446666533
No 91
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=47.98 E-value=1.4e+02 Score=23.73 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccC----chhHHHHHHHHhcc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANP----FSHYDRILRKLGCN 81 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~----~~hy~~~~~KlG~n 81 (260)
.++.++|+...|+.=|.|+.+++..+-+.+.- ++-+.+... +.-+..+.+.+.-.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQLIDQ 81 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999999888776332 454554444 22236666665444
No 92
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=47.66 E-value=42 Score=28.81 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=29.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++++..+.++++++..|.-
T Consensus 171 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 171 EPEILFLDEPTI-----GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred CCCEEEEcCCCC-----CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 567999999983 55555555566656665444456788877754
No 93
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.01 E-value=43 Score=28.02 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=28.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++++..|+-
T Consensus 146 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 146 DKPVLLLDEPFA-----ALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 578999999984 44544445555556655444456777777754
No 94
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=46.98 E-value=1.6e+02 Score=24.14 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=75.2
Q ss_pred CcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhH--HHHHHHHh-ccccccccCCceEEeecccccCC
Q 024921 26 GRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHY--DRILRKLG-CNLVTQRDNKRFIFFDMLMLRCP 102 (260)
Q Consensus 26 ~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy--~~~~~KlG-~nL~~~~~~g~~~fvD~l~~~~~ 102 (260)
|-+.+-+.. |..-+-+...+.-.+...+. +|.++-|.-....+ .+.++|++ +.+..... .+.|..
T Consensus 3 G~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~--~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~--~~~~~~------- 70 (159)
T cd00561 3 GLIQVYTGN-GKGKTTAALGLALRALGHGY--RVGVVQFLKGGWKYGELKALERLPNIEIHRMGR--GFFWTT------- 70 (159)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHCCC--eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCC--CCccCC-------
Confidence 334444554 44444444444444555444 49999999763222 23566663 33333221 111111
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 103 DVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 103 ~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+........+..++..++.+.. ...-+||+|.+...+.. | ++.+++.+++..- -.+..+|+.-+.
T Consensus 71 --~~~~~~~~~a~~~~~~a~~~~~~-----~~~dLlVLDEi~~a~~~-gli~~~~v~~ll~~r-----p~~~evIlTGr~ 137 (159)
T cd00561 71 --ENDEEDIAAAAEGWAFAKEAIAS-----GEYDLVILDEINYALGY-GLLDVEEVVDLLKAK-----PEDLELVLTGRN 137 (159)
T ss_pred --CChHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEechHhHhhC-CCCCHHHHHHHHHcC-----CCCCEEEEECCC
Confidence 00000001123344444454442 24679999999998753 5 5677777777421 122244443333
Q ss_pred cCCCCCChhHHHHHcchhcceEEEeccCC
Q 024921 182 DIYSSMERPTLILQMEYLADILIKAEPLS 210 (260)
Q Consensus 182 ~~~~~~e~~~l~~~L~h~a~~~i~l~pL~ 210 (260)
.+. .|..+||++=.+++..
T Consensus 138 -~p~---------~l~e~AD~VTEm~~vK 156 (159)
T cd00561 138 -APK---------ELIEAADLVTEMREVK 156 (159)
T ss_pred -CCH---------HHHHhCceeeecceec
Confidence 322 2566788887777654
No 95
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.53 E-value=43 Score=28.10 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=28.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+.+|+.
T Consensus 149 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 149 QPELLLLDEPFS-----ALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 567999999984 44544444555555555444356788887754
No 96
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.35 E-value=43 Score=28.57 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=35.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+.+.++.++.+.+.++|+..|+-. + +...||-++.++
T Consensus 154 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~--------~---~~~~~d~v~~l~ 211 (235)
T cd03261 154 DPELLLYDEPTA-----GLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD--------T---AFAIADRIAVLY 211 (235)
T ss_pred CCCEEEecCCcc-----cCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH--------H---HHHhcCEEEEEE
Confidence 567999999984 445444445555555554434567887777531 1 234567776664
No 97
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=46.04 E-value=2.3e+02 Score=25.67 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=54.8
Q ss_pred cEEEEeecCCCCccHHHHHHHHHhcCCC----CCCeEEEEEecc---CchhHHHHHHHH---hccccccccCCceEEeec
Q 024921 27 RVVLIEDCVETSGSFVLHQLVKRSLSPT----SSNVIIFVAFAN---PFSHYDRILRKL---GCNLVTQRDNKRFIFFDM 96 (260)
Q Consensus 27 ~l~litd~~~t~~sfLl~~~l~~~L~~~----~~~~Vvlvs~~~---~~~hy~~~~~Kl---G~nL~~~~~~g~~~fvD~ 96 (260)
..++|....|+.=+.++..+++..-... .+..++.+.+.. ....|..+++++ |....
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~------------- 107 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVP------------- 107 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCC-------------
Confidence 4689999889999999998887643211 113466666543 245666666666 22110
Q ss_pred ccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHH
Q 024921 97 LMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVE 147 (260)
Q Consensus 97 l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll 147 (260)
. . ......+++.+.+.+... ..+.+||||+++.|.
T Consensus 108 ----~----~----~~~~~~~~~~l~~~l~~~----~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 108 ----T----T----GLSTSEVFRRLYKELNER----GDSLIIVLDEIDYLV 142 (365)
T ss_pred ----C----C----CCCHHHHHHHHHHHHHhc----CCeEEEEECchhhhc
Confidence 0 0 112344555555544421 357889999999986
No 98
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.62 E-value=47 Score=27.83 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=27.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+..+.+.++++..|+.
T Consensus 148 ~p~~lllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 148 EPSLLLLDEPLS-----ALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 567999999984 44544444555555554433345777777753
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=45.54 E-value=69 Score=23.91 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.9
Q ss_pred CcEEEEEeChhHHHHH
Q 024921 134 DYVTIMIDDISLVEVA 149 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~ 149 (260)
.+++|+||+++.+...
T Consensus 58 ~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPK 73 (132)
T ss_dssp TSEEEEEETGGGTSHH
T ss_pred cceeeeeccchhcccc
Confidence 3799999999999865
No 100
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=45.53 E-value=46 Score=27.83 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=28.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+.
T Consensus 148 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 148 EPKVFLMDEPLS-----NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999984 45555555555555655444456788888754
No 101
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=45.36 E-value=49 Score=28.05 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=28.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++++.+|+.
T Consensus 164 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 164 RPDVLFADEPTG-----NLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 467999999983 45545555555555555444456777777764
No 102
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=45.22 E-value=40 Score=30.33 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccc----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLML---- 99 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~---- 99 (260)
++|.++.+-...|+.-+=|+..+....-..++. |-+.......+ +..+.++.|+=.... .|.+.+|.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~--i~i~G~~~~~~-~~~~~~~igy~~~~~------~~~~~lT~~e~l 99 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE--ILVLGYDVVKE-PAKVRRRIGYVPQEP------SLYPELTVRENL 99 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceE--EEEcCEeCccC-HHHHHhheEEEccCC------CCCccccHHHHH
Confidence 468888888888888888776666543333333 44444333333 667777777754432 34444441
Q ss_pred -cCCCCC-CC-CCCCcchHHHHHHH------HHHhcCCCCC-----------CCCcEEEEEeChhHHHHHcCCChHHHHH
Q 024921 100 -RCPDVD-EG-KSSEGGLVLLYEKI------LKTICGLPGD-----------KKDYVTIMIDDISLVEVAANGGSDYVLD 159 (260)
Q Consensus 100 -~~~~~~-~~-~~~~~~l~~L~~~I------~~~l~~~~~~-----------~~~~~~iIiDdl~~Ll~~~g~~~~~v~~ 159 (260)
++..+. .+ .........+.+.+ .+.++.+++. -..+.++|+|.|. .|+++.....
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-----~GLDp~~~~~ 174 (293)
T COG1131 100 EFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-----SGLDPESRRE 174 (293)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-----cCCCHHHHHH
Confidence 111100 00 00000111111110 0001111110 0357899999997 4778777777
Q ss_pred HHHHHHHhhcccCCeEEEEeec
Q 024921 160 FLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 160 fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
|...++.++.+.+.+|++.+|.
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~ 196 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHI 196 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCc
Confidence 7777787766555677777773
No 103
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=44.46 E-value=50 Score=28.14 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=29.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.++++|+..|+.
T Consensus 147 ~p~lllLDEP~~-----gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 147 EQPILLLDEPFS-----ALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 577999999963 55555555666666665444456777777754
No 104
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=44.41 E-value=49 Score=28.27 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=36.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+.+.++.++.+.+.++++.+|+-. . +...||-++.++
T Consensus 132 ~p~lllLDEPt~-----gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------~---~~~~~d~v~~l~ 189 (230)
T TIGR01184 132 RPKVLLLDEPFG-----ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD--------E---ALLLSDRVVMLT 189 (230)
T ss_pred CCCEEEEcCCCc-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------H---HHHhcCEEEEEe
Confidence 567999999983 455555555666666655444567887777531 1 344566666664
No 105
>PHA00520 packaging NTPase P4
Probab=43.97 E-value=2e+02 Score=26.34 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=34.5
Q ss_pred cEEEEEeChhHHHHHcCC------ChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 135 YVTIMIDDISLVEVAANG------GSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~------~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
-.+|+||.+--++..++. =+...-+|+..|-++|.+..|.+|+-..-
T Consensus 184 v~VvvvDSlr~vl~~~~GnatsGGISr~~~~~LTdl~~iaas~gc~vV~~lNP 236 (330)
T PHA00520 184 VDVVVVDSLRNVLFELGGNATSGGISRGAYGLLTDLGNIAASRGCRVVATLNP 236 (330)
T ss_pred ceEEEEechHHHHhhhccCCCCCcchHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 357999999999765421 14666788988989888888877765543
No 106
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=43.96 E-value=41 Score=29.41 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=38.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.+|+-|.|+-=+.. -+..+|++.+..+ ..+.+.++|+..|+.. ++.+||.+|.++
T Consensus 160 ~P~iilADEPTgnLD~--~t~~~V~~ll~~~---~~~~g~tii~VTHd~~------------lA~~~dr~i~l~ 216 (226)
T COG1136 160 NPKIILADEPTGNLDS--KTAKEVLELLREL---NKERGKTIIMVTHDPE------------LAKYADRVIELK 216 (226)
T ss_pred CCCeEEeeCccccCCh--HHHHHHHHHHHHH---HHhcCCEEEEEcCCHH------------HHHhCCEEEEEe
Confidence 5788999999854432 3456667776555 3455668888888652 455778887776
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.95 E-value=49 Score=28.17 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=28.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......|...++.++.+.+.++++..|..
T Consensus 158 ~p~lllLDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 158 NPKVLLCDEATS-----ALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred CCCEEEecCCCC-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999973 45555555555556655444456787777753
No 108
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=43.75 E-value=52 Score=28.00 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=29.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+..+.+.++|+..|+.
T Consensus 155 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 155 MPKVLLLDEITS-----ALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198 (225)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh
Confidence 467999999963 55655555666666665444456787777764
No 109
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=43.63 E-value=82 Score=26.40 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=40.4
Q ss_pred cEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCc
Q 024921 135 YVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLA 214 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a 214 (260)
+.++|+|.|+. |++......+...++.+.. +.++|+..|... +. ..||-++.+.--.+|.+
T Consensus 136 ~~illlDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--------~~----~~~d~v~~~~~~~~~~~ 196 (197)
T cd03278 136 SPFCVLDEVDA-----ALDDANVERFARLLKEFSK--ETQFIVITHRKG--------TM----EAADRLYGVTMQESGVS 196 (197)
T ss_pred CCEEEEeCCcc-----cCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--------HH----hhcceEEEEEeccCCCC
Confidence 46899999973 4555555556555555432 456777776531 22 24899999888888876
Q ss_pred c
Q 024921 215 T 215 (260)
Q Consensus 215 ~ 215 (260)
|
T Consensus 197 ~ 197 (197)
T cd03278 197 K 197 (197)
T ss_pred C
Confidence 4
No 110
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.62 E-value=51 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=35.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-. + +...||.++.++
T Consensus 162 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--------~---~~~~~d~v~~l~ 219 (241)
T cd03256 162 QPKLILADEPVA-----SLDPASSRQVMDLLKRINREEGITVIVSLHQVD--------L---AREYADRIVGLK 219 (241)
T ss_pred CCCEEEEeCccc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------H---HHHhCCEEEEEE
Confidence 567999999984 445455555555566554444567777777531 1 233467666664
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=43.40 E-value=51 Score=28.18 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.++.+.+.++++..|+-
T Consensus 163 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 163 QPDLILADEPIA-----SLDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 568999999974 44544444555555555444456777777753
No 112
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=43.12 E-value=1e+02 Score=27.67 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=59.0
Q ss_pred EEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEE
Q 024921 60 IFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIM 139 (260)
Q Consensus 60 vlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iI 139 (260)
..+.|++..-|= ..+.|||+=+.-+...|...|+-... . +|......+.-+ ++ +.+.++|
T Consensus 147 t~IefS~pvpHG-~eGskLGyVl~v~V~dg~~~i~faSD-v-----qGp~~~~~l~~i-------~e------~~P~v~i 206 (304)
T COG2248 147 TVIEFSPPVPHG-REGSKLGYVLMVAVTDGKSSIVFASD-V-----QGPINDEALEFI-------LE------KRPDVLI 206 (304)
T ss_pred EEEEecCCCCCC-CcccccceEEEEEEecCCeEEEEccc-c-----cCCCccHHHHHH-------Hh------cCCCEEE
Confidence 445666666554 23478888887766666655542211 1 211122223222 12 2577999
Q ss_pred EeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEee
Q 024921 140 IDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNH 180 (260)
Q Consensus 140 iDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h 180 (260)
|++|-..+-..-+....+..-++.++.+.+.....+|+=.|
T Consensus 207 i~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHH 247 (304)
T COG2248 207 IGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHH 247 (304)
T ss_pred ecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeeh
Confidence 99999843233466677777777777777766666666555
No 113
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=43.11 E-value=50 Score=28.75 Aligned_cols=44 Identities=7% Similarity=0.023 Sum_probs=28.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.++.+.+.++|+..|+-
T Consensus 170 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 170 QAKVILADEPIA-----SLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred CCCEEEecCccc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 568999999984 44544545555555555444446777777754
No 114
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.07 E-value=53 Score=29.18 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=30.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|. .|++......|.+.++.++.+.+.++|+..|+-
T Consensus 159 ~p~lLilDEPt-----~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 159 EPKVLVLDEPT-----AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred CCCEEEEeCCc-----cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 57899999997 356666666666667766554456788877753
No 115
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=43.06 E-value=54 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.++.+.+.++++..|..
T Consensus 158 ~p~lllLDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 158 DPKIILADEPTG-----NLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 568999999984 44544444555555555433356777777753
No 116
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=43.03 E-value=58 Score=26.74 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=27.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.... .+.++++..|+-
T Consensus 145 ~p~llllDEPt~-----~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 145 RPDVLLLDEPTA-----GLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 467999999983 4555555555555555533 346788887753
No 117
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=42.90 E-value=78 Score=26.36 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=54.1
Q ss_pred EEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEE
Q 024921 59 IIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTI 138 (260)
Q Consensus 59 Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~i 138 (260)
.++.--.+.+.+=..++.+||+++-..++++.+..=+....-... .....+ .-..++++ .+.-++
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~-----~~~~~l----~~~~~~l~------~G~rVl 120 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLE-----YGSETL----ELHKDALK------PGDRVL 120 (179)
T ss_pred EEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEe-----ccceEE----EEEhhhCC------CCCEEE
Confidence 677777789999999999999999998887776432221110000 000111 11112222 367899
Q ss_pred EEeChhHHHHHcCCChHHHHHHHHHH
Q 024921 139 MIDDISLVEVAANGGSDYVLDFLHYC 164 (260)
Q Consensus 139 IiDdl~~Ll~~~g~~~~~v~~fi~~l 164 (260)
||||+ + ++|.+...+.+.++.+
T Consensus 121 IVDDl---l-aTGgT~~a~~~Ll~~~ 142 (179)
T COG0503 121 IVDDL---L-ATGGTALALIELLEQA 142 (179)
T ss_pred EEecc---h-hcChHHHHHHHHHHHC
Confidence 99996 4 5799988887777544
No 118
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=42.88 E-value=61 Score=29.35 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=38.4
Q ss_pred EEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccc
Q 024921 29 VLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85 (260)
Q Consensus 29 ~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~ 85 (260)
.+|.| .=||... +.-+++.+-+.+-. |-++-=.++..||-..|.|+++|....
T Consensus 151 AIVMD-~FTD~dI-f~DLleAa~kR~Vp--VYiLLD~~~~~~Fl~Mc~~~~v~~~~~ 203 (284)
T PF07894_consen 151 AIVMD-VFTDVDI-FCDLLEAANKRGVP--VYILLDEQNLPHFLEMCEKLGVNLQHL 203 (284)
T ss_pred EEEee-ccccHHH-HHHHHHHHHhcCCc--EEEEechhcChHHHHHHHHCCCChhhc
Confidence 44444 3566655 33466666555444 999999999999999999999998763
No 119
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=42.69 E-value=55 Score=28.00 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=28.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+...++|+..|.-
T Consensus 150 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 150 RPALLLLDEPTV-----GLDPASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred CCCEEEEcCCcc-----CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 568999999973 55655555666666655433345777777754
No 120
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=42.20 E-value=65 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...++.+..+ +.++|+..|+.
T Consensus 100 ~p~illlDEP~~-----~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~ 142 (163)
T cd03216 100 NARLLILDEPTA-----ALTPAEVERLFKVIRRLRAQ-GVAVIFISHRL 142 (163)
T ss_pred CCCEEEEECCCc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 467999999963 45555555666666655433 45677777653
No 121
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=42.01 E-value=58 Score=27.18 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=26.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+.+ +.++++.+|+-
T Consensus 152 ~p~llllDEPt~-----~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~ 194 (211)
T cd03225 152 DPDILLLDEPTA-----GLDPAGRRELLELLKKLKAE-GKTIIIVTHDL 194 (211)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 467999999984 44444444455555555443 56777777753
No 122
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.95 E-value=56 Score=28.92 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=30.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......++..++.+..+.+.++++.+|+.
T Consensus 158 ~p~lLlLDEPt~-----~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 158 RPKIIILDEATS-----MLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred CCCEEEEECCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 578999999983 45655666666666666544456788888764
No 123
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.80 E-value=64 Score=26.29 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=28.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...+++++.+...++++..|+.
T Consensus 118 ~p~llilDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 118 DPDVLLLDEPTS-----ALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 567999999973 45545544555555555444346788888753
No 124
>PF13479 AAA_24: AAA domain
Probab=41.76 E-value=1.4e+02 Score=25.29 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=41.8
Q ss_pred CcEEEEEeChhHHHHHc---------------CCC---------hHHHHHHHHHHHHhhcccCCeEEEEeeccCCCC---
Q 024921 134 DYVTIMIDDISLVEVAA---------------NGG---------SDYVLDFLHYCHALTSEFDCSLITLNHEDIYSS--- 186 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~---------------g~~---------~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~--- 186 (260)
.--+||||.++.+.... |.. ..++.+|+.++ ......+||+++|.....+
T Consensus 68 ~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l---~~~~~~~VI~tah~~~~~~~~~ 144 (213)
T PF13479_consen 68 DYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKL---LNALGKNVIFTAHAKEEEDEDG 144 (213)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHH---HHHCCCcEEEEEEEEEEEcCCC
Confidence 45589999999984331 110 12234444433 2346678999999543211
Q ss_pred --------CChhHHHHHcchhcceEEEec
Q 024921 187 --------MERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 187 --------~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.........+...+|++..++
T Consensus 145 ~~~~~~~~~l~~k~~~~l~~~~D~V~~l~ 173 (213)
T PF13479_consen 145 GKYTRYKPKLGKKVRNELPGWFDVVGRLR 173 (213)
T ss_pred CceeEEeeccChhHHhhhhecccEEEEEE
Confidence 122457788899999994443
No 125
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.30 E-value=60 Score=27.37 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++|+..|+-
T Consensus 149 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 149 RPEVLFLDEPTI-----GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred CCCEEEEcCCcc-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 567999999974 44544444555555555444456777777753
No 126
>PHA00527 hypothetical protein
Probab=41.30 E-value=23 Score=27.16 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.7
Q ss_pred EEeccCchhHHHHHHHHhccccc
Q 024921 62 VAFANPFSHYDRILRKLGCNLVT 84 (260)
Q Consensus 62 vs~~~~~~hy~~~~~KlG~nL~~ 84 (260)
|-|.+++.-|+..++|||+|...
T Consensus 22 v~~CR~~~EWQ~~~~~LGVD~~~ 44 (129)
T PHA00527 22 VYLCRSKEEWQQACIHLGVDSGG 44 (129)
T ss_pred EEEEcChHHHHHHHHHhCCCcCC
Confidence 44679999999999999999653
No 127
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.17 E-value=59 Score=28.49 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.++.+.+.++++..|..
T Consensus 160 ~p~lllLDEPt~-----~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 160 NPSVIILDEATS-----MLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 567999999983 45655556666666666544456777777753
No 128
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=41.10 E-value=65 Score=26.71 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=29.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......|...++.++.+ +.++|+..|..
T Consensus 152 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~ 194 (206)
T TIGR03608 152 DPPLILADEPTG-----SLDPKNRDEVLDLLLELNDE-GKTIIIVTHDP 194 (206)
T ss_pred CCCEEEEeCCcC-----CCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 578999999984 45555656666666665433 45777777753
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=41.05 E-value=1.4e+02 Score=21.92 Aligned_cols=40 Identities=8% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEecc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN 66 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~ 66 (260)
.+..++|+...|+.=+.++.++...+...+.. |+.+.+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~--v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAP--FLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCC--eEEEehhh
Confidence 45678888888999999888888876643333 66665443
No 130
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=40.89 E-value=63 Score=27.18 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-
T Consensus 159 ~p~illlDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 159 QPSLVLADEPTG-----NLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred CCCEEEEeCCCC-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467999999983 44544444555555555444456777777753
No 131
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.56 E-value=63 Score=28.62 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=30.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.+..+...++|+..|+.
T Consensus 158 ~p~lllLDEPt~-----gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 158 QPDIIILDEATS-----MLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 578999999973 56655556666666666444456788887754
No 132
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=40.50 E-value=82 Score=28.02 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+-++++|.|. .|+++.-...|..-+..+..+ .++|++..|+-
T Consensus 157 ~p~lllLDEP~-----~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL 199 (254)
T COG1121 157 NPDLLLLDEPF-----TGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL 199 (254)
T ss_pred CCCEEEecCCc-----ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 56799999996 356644444444444444335 77888888753
No 133
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=40.08 E-value=98 Score=26.68 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEE----eccCchhHHHHHHHHhcc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVA----FANPFSHYDRILRKLGCN 81 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs----~~~~~~hy~~~~~KlG~n 81 (260)
.+.+++|+...|+.=+.++..+....-.+ . ++.+. .....+++..++..+|++
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~--~--~~~~~~~~~~~~~~~~l~~i~~~lG~~ 98 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE--R--VVAAKLVNTRVDAEDLLRMVAADFGLE 98 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC--C--eEEeeeeCCCCCHHHHHHHHHHHcCCC
Confidence 35678889989999999999887664422 2 32222 123345666777777665
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=39.86 E-value=61 Score=28.35 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.++++|+.+|..
T Consensus 165 ~p~lllLDEPt~-----~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 165 DSRCLLLDEPTS-----ALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 578999999974 44544444555555555434456788877753
No 135
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.84 E-value=62 Score=28.85 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=30.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....++..++.+..+.+.++|+..|+.
T Consensus 163 ~P~llllDEPt~-----~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 163 EPEVLVLDEPTA-----GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred CCCEEEEECCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 578999999983 55655656666666666444456788888754
No 136
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=39.68 E-value=63 Score=27.21 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+.+.+.++++..|+-
T Consensus 163 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 163 NPKLLIADEPTS-----ALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred CCCEEEecCCCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999984 44544444555555555444356777777753
No 137
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=39.61 E-value=65 Score=28.06 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=36.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
.+.++|+|.|..-+ +......+.+.++.++.+.+.++|+..|+-. + +...||.++-+..
T Consensus 133 ~p~llllDEPt~~L-----D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~--------~---~~~~~d~i~~l~~ 191 (246)
T cd03237 133 DADIYLLDEPSAYL-----DVEQRLMASKVIRRFAENNEKTAFVVEHDII--------M---IDYLADRLIVFEG 191 (246)
T ss_pred CCCEEEEeCCcccC-----CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------H---HHHhCCEEEEEcC
Confidence 46799999998544 4445555556666665555567888887642 1 3345666666643
No 138
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=39.48 E-value=62 Score=28.39 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++|+..|+
T Consensus 161 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 161 EPDLIMFDEPFV-----GQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred CCCEEEEcCCCc-----cCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 467999999973 4555555555555565544445678888875
No 139
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.43 E-value=68 Score=26.02 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=26.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|..= ++......+.+.++.+..+ +.++++..|+.
T Consensus 113 ~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~-g~tiii~th~~ 155 (173)
T cd03230 113 DPELLILDEPTSG-----LDPESRREFWELLRELKKE-GKTILLSSHIL 155 (173)
T ss_pred CCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHC-CCEEEEECCCH
Confidence 5679999999844 4444444555555555433 45677777753
No 140
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=39.36 E-value=62 Score=27.56 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++++..|..
T Consensus 143 ~p~vllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 143 EPPFLIADEPTT-----DLDVVNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred CCCEEEEcCCcc-----ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467999999984 44544555555666655443445777777753
No 141
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.35 E-value=66 Score=28.42 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=28.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......|...++.+..+.+.++|+..|.-
T Consensus 155 ~p~llilDEPt~-----gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 155 EPQVLVLDEPTA-----GLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 567999999983 45544555555556655444456777777753
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=39.26 E-value=66 Score=27.78 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=28.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-
T Consensus 164 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 164 RPKVMLFDEVTS-----ALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 467999999984 44544445555555655444456788888753
No 143
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=39.19 E-value=65 Score=28.49 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=29.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|..
T Consensus 162 ~p~llllDEPt~-----gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 162 RPECIIFDEPTA-----MLDPSGRREVVNTIKELNKKYGITIILITHYM 205 (280)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 578999999983 55555555666666666444456777777754
No 144
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.02 E-value=66 Score=27.11 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++++..|.-
T Consensus 149 ~p~lllLDEPt~-----~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 149 DPDVLLLDEPFS-----ALDALTREQLQEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred CCCEEEECCCCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 467999999984 45544444555555555434445777777754
No 145
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=38.93 E-value=69 Score=27.94 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=27.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+.+.++.+..+...++|+..|.
T Consensus 138 ~p~lllLDEPt~-----~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 138 RPQLLVLDEPTQ-----GVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 567999999983 4454444455555555544435677777774
No 146
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=38.77 E-value=71 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=27.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+.+ +.++|+..|..
T Consensus 160 ~p~llllDEP~~-----gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~ 202 (224)
T cd03220 160 EPDILLIDEVLA-----VGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP 202 (224)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 567999999983 45544444555555555443 45777777753
No 147
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.75 E-value=67 Score=27.51 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=34.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|.-. . +...||-++.++
T Consensus 154 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~--------~---~~~~~d~i~~l~ 211 (239)
T cd03296 154 EPKVLLLDEPFG-----ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE--------E---ALEVADRVVVMN 211 (239)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------H---HHHhCCEEEEEE
Confidence 467999999984 445444445555555554443557777777531 1 234466666664
No 148
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.50 E-value=66 Score=28.26 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=35.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++++..|+.. + +...||.++-+.
T Consensus 178 ~p~illLDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~--------~---~~~~~d~v~~l~ 235 (269)
T cd03294 178 DPDILLMDEAFS-----ALDPLIRREMQDELLRLQAELQKTIVFITHDLD--------E---ALRLGDRIAIMK 235 (269)
T ss_pred CCCEEEEcCCCc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------H---HHHhcCEEEEEE
Confidence 568999999983 455555555555556555444567777777531 1 234466666664
No 149
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=38.39 E-value=86 Score=26.70 Aligned_cols=57 Identities=14% Similarity=0.332 Sum_probs=38.6
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccC-----chhHHHHHHHHhcccc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANP-----FSHYDRILRKLGCNLV 83 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~-----~~hy~~~~~KlG~nL~ 83 (260)
...++||.|...|..+|+ + +++..-......+++++|..+- ...+....+++|+++.
T Consensus 121 ~~~lVLVDDEiSTG~T~l-n-li~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~ 182 (191)
T PF15609_consen 121 ARTLVLVDDEISTGNTFL-N-LIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEELGIPID 182 (191)
T ss_pred CCCEEEEecCccchHHHH-H-HHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEE
Confidence 458899999866655553 3 3333333334667999998754 4568899999999864
No 150
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=38.38 E-value=70 Score=27.24 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=27.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+....+.++|+..|+-
T Consensus 163 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 163 NPRLVLADEPTG-----NLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 578999999984 44544444555555554333345777777753
No 151
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.34 E-value=66 Score=27.58 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=28.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|..
T Consensus 153 ~p~llllDEPt~-----~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 153 DPPLLLMDEPFG-----ALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred CCCEEEecCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 467999999973 44544445555555555444456777777753
No 152
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=38.15 E-value=69 Score=27.92 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=35.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-. + +...||-++.++
T Consensus 146 ~p~lllLDEPt~-----~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~--------~---~~~~~d~i~~l~ 203 (255)
T PRK11248 146 NPQLLLLDEPFG-----ALDAFTREQMQTLLLKLWQETGKQVLLITHDIE--------E---AVFMATELVLLS 203 (255)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------H---HHHhCCEEEEEe
Confidence 567999999984 445444445555555543334567777777531 2 344567666664
No 153
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=37.98 E-value=73 Score=26.62 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.++. .+.++|+..|+.
T Consensus 150 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~ 192 (213)
T cd03235 150 DPDLLLLDEPFA-----GVDPKTQEDIYELLRELRR-EGMTILVVTHDL 192 (213)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 578999999973 4555555556666665543 345777777753
No 154
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.98 E-value=69 Score=28.30 Aligned_cols=44 Identities=9% Similarity=0.229 Sum_probs=29.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|.-
T Consensus 158 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 158 RPEIIILDESTS-----MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467999999963 55555555666666665544456777777754
No 155
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=37.97 E-value=72 Score=26.89 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++++.+|..
T Consensus 159 ~p~illlDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 159 RPKLVLADEPTA-----ALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred CCCEEEEeCCCC-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999984 44444444555555554333456788888763
No 156
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=37.92 E-value=77 Score=25.86 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=27.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++++..+.+.++++..|.-
T Consensus 115 ~p~llllDEP~~-----~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 115 EPPILLLDEPTS-----HLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred CCCEEEEeCCcc-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467999999984 44544545555555555333245777777653
No 157
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.81 E-value=67 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++..+.+ +.++++..|.-
T Consensus 146 ~p~~lllDEP~~-----~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~ 188 (210)
T cd03269 146 DPELLILDEPFS-----GLDPVNVELLKDVIRELARA-GKTVILSTHQM 188 (210)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH
Confidence 467999999983 55555555666666655433 45777777743
No 158
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=37.34 E-value=83 Score=26.19 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=28.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
.+.++|+|.|.. |++......+...++..+. .++++|+..|+..
T Consensus 143 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~ 186 (201)
T cd03231 143 GRPLWILDEPTT-----ALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL 186 (201)
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch
Confidence 467999999984 4454454555555555443 3567888888653
No 159
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=37.21 E-value=88 Score=25.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=36.7
Q ss_pred cEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 135 YVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
+.++|+|.|.. +++......+.+.++.++. .+.++++..|... +. ..||.++.++.
T Consensus 108 p~llLlDEPt~-----~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~--------~~----~~~d~i~~l~~ 163 (176)
T cd03238 108 GTLFILDEPST-----GLHQQDINQLLEVIKGLID-LGNTVILIEHNLD--------VL----SSADWIIDFGP 163 (176)
T ss_pred CCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH--------HH----HhCCEEEEECC
Confidence 67999999963 5566666666666766643 4557777776541 22 24788888765
No 160
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=37.16 E-value=78 Score=26.53 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=26.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|..= ++......+...++.++. .+.++|+..|+-
T Consensus 156 ~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~ 198 (216)
T TIGR00960 156 KPPLLLADEPTGN-----LDPELSRDIMRLFEEFNR-RGTTVLVATHDI 198 (216)
T ss_pred CCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 5679999999844 444444445555555433 356777777753
No 161
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.16 E-value=1.4e+02 Score=24.84 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=24.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|+|..= ++...-..+...++.++.+.+.++|+..|.
T Consensus 136 ~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 136 RASVLCWDNSTRG-----LDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred CCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4679999999844 444444445554555444334555555543
No 162
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.05 E-value=75 Score=28.18 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=29.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...++.++.+.+.++|+..|..
T Consensus 161 ~P~llllDEPt~-----gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 204 (282)
T PRK13640 161 EPKIIILDESTS-----MLDPAGKEQILKLIRKLKKKNNLTVISITHDI 204 (282)
T ss_pred CCCEEEEECCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 578999999983 55555555566666655444456777777754
No 163
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.78 E-value=75 Score=27.16 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=36.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.++++|+..|.-. + +...||.++.+.
T Consensus 147 ~p~llllDEPt~-----gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~--------~---~~~~~d~i~~l~ 204 (235)
T cd03299 147 NPKILLLDEPFS-----ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE--------E---AWALADKVAIML 204 (235)
T ss_pred CCCEEEECCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------H---HHHhCCEEEEEE
Confidence 467999999973 455555555555566655444667888877431 1 345567666665
No 164
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=36.64 E-value=76 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|..= ++......+...++.+..+.+.++++..|..
T Consensus 146 ~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 146 PNPILLLDEPFSA-----LDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred CCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4679999999844 4444444555555555433456787777754
No 165
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=36.44 E-value=76 Score=27.07 Aligned_cols=42 Identities=10% Similarity=0.184 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.++.+ +.++|+..|+
T Consensus 155 ~p~illlDEPt~-----~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 196 (237)
T PRK11614 155 QPRLLLLDEPSL-----GLAPIIIQQIFDTIEQLREQ-GMTIFLVEQN 196 (237)
T ss_pred CCCEEEEcCccc-----cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCc
Confidence 578999999973 45555545555555555433 5577777774
No 166
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.35 E-value=82 Score=27.07 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=34.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++|+.+|+-. + +...||.++.++
T Consensus 149 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~--------~---~~~~~d~i~~l~ 206 (241)
T PRK14250 149 NPEVLLLDEPTS-----ALDPTSTEIIEELIVKLKNKMNLTVIWITHNME--------Q---AKRIGDYTAFLN 206 (241)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--------H---HHHhCCEEEEEe
Confidence 567999999984 445444445555555554333457777777531 2 234566666664
No 167
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=36.03 E-value=79 Score=27.07 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=28.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+.+.++++|+.+|..
T Consensus 148 ~p~llllDEP~~-----~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 148 EPQVLLLDEPFG-----ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 568999999973 55555555555556555443356788888754
No 168
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=35.97 E-value=78 Score=27.42 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=27.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++...-..+...++.++.+.+.++++..|..
T Consensus 158 ~p~lLlLDEPt~-----~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 158 EAPFIIADEPTT-----DLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred CCCEEEEeCCCc-----ccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 567999999984 34444444555555555444456788887753
No 169
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=35.94 E-value=2.7e+02 Score=23.60 Aligned_cols=156 Identities=11% Similarity=0.120 Sum_probs=84.5
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhH--HHHHHHH-hccccccccCCceEEeecccccC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHY--DRILRKL-GCNLVTQRDNKRFIFFDMLMLRC 101 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy--~~~~~Kl-G~nL~~~~~~g~~~fvD~l~~~~ 101 (260)
.|.+.+.+.. |..-+=....+.-.++..+. +|+++=|+-+..+| ...++|+ ++.+..+.. .|.|..
T Consensus 22 ~g~v~v~~g~-GkGKtt~a~g~a~ra~g~G~--~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~--~~~~~~------ 90 (191)
T PRK05986 22 KGLLIVHTGN-GKGKSTAAFGMALRAVGHGK--KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGT--GFTWET------ 90 (191)
T ss_pred CCeEEEECCC-CCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCccCHHHHHhcCCCcEEEECCC--CCcccC------
Confidence 6777888876 44444444444444444444 49999999765222 2344554 344333221 122211
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHHHHHHHHHHHhhcccCCeEEEEee
Q 024921 102 PDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYVLDFLHYCHALTSEFDCSLITLNH 180 (260)
Q Consensus 102 ~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v~~fi~~l~~~~~~~~~~lv~l~h 180 (260)
. +........+..++..++.+.. +..-+||+|.+...+.. | ++..+|++++..- ..+..|| +.-
T Consensus 91 -~--~~~e~~~~~~~~~~~a~~~l~~-----~~ydlvVLDEi~~Al~~-gli~~eevi~~L~~r-----p~~~evV-lTG 155 (191)
T PRK05986 91 -Q--DRERDIAAAREGWEEAKRMLAD-----ESYDLVVLDELTYALKY-GYLDVEEVLEALNAR-----PGMQHVV-ITG 155 (191)
T ss_pred -C--CcHHHHHHHHHHHHHHHHHHhC-----CCCCEEEEehhhHHHHC-CCccHHHHHHHHHcC-----CCCCEEE-EEC
Confidence 0 1000011234455555555542 24668999999998853 5 6788888888421 1112233 332
Q ss_pred ccCCCCCChhHHHHHcchhcceEEEeccCCCcCcc
Q 024921 181 EDIYSSMERPTLILQMEYLADILIKAEPLSTGLAT 215 (260)
Q Consensus 181 ~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~ 215 (260)
-..+. .|..+||+|=.+++...-+-+
T Consensus 156 R~~p~---------~Lie~ADlVTEm~~vKHp~~~ 181 (191)
T PRK05986 156 RGAPR---------ELIEAADLVTEMRPVKHPFDA 181 (191)
T ss_pred CCCCH---------HHHHhCchheecccccCchhc
Confidence 33322 267789999888887766643
No 170
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=35.94 E-value=83 Score=26.41 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++. .++++++..|+.
T Consensus 150 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~ 192 (222)
T cd03224 150 RPKLLLLDEPSE-----GLAPKIVEEIFEAIRELRD-EGVTILLVEQNA 192 (222)
T ss_pred CCCEEEECCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 578999999973 4554444555555555543 346787777753
No 171
>PRK10908 cell division protein FtsE; Provisional
Probab=35.49 E-value=85 Score=26.46 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++. .+.++++..|+.
T Consensus 155 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~ 197 (222)
T PRK10908 155 KPAVLLADEPTG-----NLDDALSEGILRLFEEFNR-VGVTVLMATHDI 197 (222)
T ss_pred CCCEEEEeCCCC-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 567999999984 4454444455555555533 345777777753
No 172
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=35.36 E-value=83 Score=26.34 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=28.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++. .+.++|+..|+.
T Consensus 154 ~p~illlDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~ 196 (218)
T cd03266 154 DPPVLLLDEPTT-----GLDVMATRALREFIRQLRA-LGKCILFSTHIM 196 (218)
T ss_pred CCCEEEEcCCCc-----CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 567999999984 4555555555566665543 346777777754
No 173
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.35 E-value=79 Score=28.04 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=27.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++|+.+|.-
T Consensus 168 ~p~lLlLDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 168 DGNTLVLDEPTG-----GLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 467999999984 44444444555555554433355777777753
No 174
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=35.35 E-value=80 Score=27.71 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=28.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++++.+|+-
T Consensus 151 ~p~lllLDEPt~-----~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 151 RPGLLLLDEPLG-----ALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999973 45554544555555555444456788877754
No 175
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=35.16 E-value=75 Score=27.86 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=28.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|.-
T Consensus 167 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 167 RPKVIIADEALA-----SLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 577999999984 44544445555556655444455677777753
No 176
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.12 E-value=61 Score=28.55 Aligned_cols=42 Identities=5% Similarity=0.056 Sum_probs=33.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+-+|++|.|..-+. .++...+..+|+.| +.+-++|++.|.-
T Consensus 167 ~PeVlLmDEPtSALD--PIsT~kIEeLi~eL-----k~~yTIviVTHnm 208 (253)
T COG1117 167 KPEVLLMDEPTSALD--PISTLKIEELITEL-----KKKYTIVIVTHNM 208 (253)
T ss_pred CCcEEEecCcccccC--chhHHHHHHHHHHH-----HhccEEEEEeCCH
Confidence 467899999987664 57778889999888 4567899998853
No 177
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=34.88 E-value=2.1e+02 Score=23.39 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=35.2
Q ss_pred cEEEEEeChhHHHHHcCC-Ch-H----HHHHHHHHHHHhhcccCCeEEEEeecc----CCCCCCh-------hHHHHHcc
Q 024921 135 YVTIMIDDISLVEVAANG-GS-D----YVLDFLHYCHALTSEFDCSLITLNHED----IYSSMER-------PTLILQME 197 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~-~~-~----~v~~fi~~l~~~~~~~~~~lv~l~h~~----~~~~~e~-------~~l~~~L~ 197 (260)
..+|+||.++.++...-. +. . ++..|++.++ +..+++|+..... .+.+.+. -.+...|+
T Consensus 77 ~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~----~~~~tvVlVs~Evg~g~vp~~~~~r~~~d~lG~lnq~la 152 (170)
T PRK05800 77 GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ----QLPAKIILVTNEVGMGIVPEYRLGRHFRDIAGRLNQQLA 152 (170)
T ss_pred CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH----cCCCCEEEEEcCCcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 347999999999753211 21 2 2334444443 3444555554322 1222111 24566677
Q ss_pred hhcceEEEe
Q 024921 198 YLADILIKA 206 (260)
Q Consensus 198 h~a~~~i~l 206 (260)
.+||-+..+
T Consensus 153 ~~ad~V~~v 161 (170)
T PRK05800 153 AAADEVYLV 161 (170)
T ss_pred HHCCEEEEE
Confidence 778777654
No 178
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=34.55 E-value=91 Score=25.91 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=27.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++..+. .+.++++..|..
T Consensus 144 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~ 186 (205)
T cd03226 144 GKDLLIFDEPTS-----GLDYKNMERVGELIRELAA-QGKAVIVITHDY 186 (205)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 467999999984 4554444555555555543 345777777753
No 179
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.45 E-value=90 Score=26.91 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=27.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...+..+..+.+.++|+..|..
T Consensus 171 ~p~llllDEPt~-----~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 171 QPEILMLDEPAA-----GLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred CCCEEEEcCCcc-----CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 578999999973 45544444444445554333356788877754
No 180
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=34.37 E-value=90 Score=26.51 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=34.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++..+. .+.++|+..|+-. + +...||-++.++
T Consensus 161 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~--------~---~~~~~d~i~~l~ 217 (236)
T cd03219 161 DPKLLLLDEPAA-----GLNPEETEELAELIRELRE-RGITVLLVEHDMD--------V---VMSLADRVTVLD 217 (236)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH--------H---HHHhCCEEEEEe
Confidence 467999999974 4454444455555555543 3457777777531 1 334566666664
No 181
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=34.35 E-value=86 Score=26.08 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=26.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+. .+.++|+..|+.
T Consensus 144 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~ 186 (208)
T cd03268 144 NPDLLILDEPTN-----GLDPDGIKELRELILSLRD-QGITVLISSHLL 186 (208)
T ss_pred CCCEEEECCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 567999999984 4454444455555555543 345677777753
No 182
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=34.11 E-value=97 Score=25.79 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++++..|..
T Consensus 153 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~ 195 (213)
T cd03262 153 NPKVMLFDEPTS-----ALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM 195 (213)
T ss_pred CCCEEEEeCCcc-----CCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 467999999983 5565555566666665543 345677777753
No 183
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=34.03 E-value=4.3e+02 Score=25.32 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=72.9
Q ss_pred HHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEecc---CchhHHHHHHHHh-ccccc
Q 024921 9 LDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN---PFSHYDRILRKLG-CNLVT 84 (260)
Q Consensus 9 l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~---~~~hy~~~~~KlG-~nL~~ 84 (260)
|-..||=+....| +.+.|-...+|.-++++-+++... ..+-+++.... -...|..++.|.+ .+-..
T Consensus 18 L~~Llg~~~~~~P-----S~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg 87 (438)
T KOG2543|consen 18 LKSLLGNNSCTIP-----SIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNKSQLADKDG 87 (438)
T ss_pred HHHHhCCCCcccc-----eeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHHhccCCCch
Confidence 4455655555555 566777777999999998888864 12355666554 4456888888877 11110
Q ss_pred cccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCC--CCCCcEEEEEeChhHHHHHcCCChHHHHHHHH
Q 024921 85 QRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPG--DKKDYVTIMIDDISLVEVAANGGSDYVLDFLH 162 (260)
Q Consensus 85 ~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~--~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~ 162 (260)
.++.+.. ..+......+.+++. +.+..++||+|+.+.|-.. + .-++.++-
T Consensus 88 -------~~~~~~~-----------------en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~---~-a~ll~~l~ 139 (438)
T KOG2543|consen 88 -------DKVEGDA-----------------ENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM---D-AILLQCLF 139 (438)
T ss_pred -------hhhhhHH-----------------HHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc---c-hHHHHHHH
Confidence 1111111 111111111222221 1135889999999998642 2 24466666
Q ss_pred HHHHhhcccCCeEEEE
Q 024921 163 YCHALTSEFDCSLITL 178 (260)
Q Consensus 163 ~l~~~~~~~~~~lv~l 178 (260)
.+..+...-.+.++..
T Consensus 140 ~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 140 RLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHHhCCCceEEEEe
Confidence 6766655444444433
No 184
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=33.99 E-value=92 Score=26.36 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=27.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+.+.+.++|+.+|.-
T Consensus 149 ~p~illlDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 149 RPKLLLLDEPTE-----GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred CCCEEEecCCcc-----cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 568999999973 44544444555555554433356777777754
No 185
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=33.98 E-value=94 Score=27.06 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=26.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++|+.+|+
T Consensus 158 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 158 PPRWLLLDEPTS-----ALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 567999999984 3444444444455555432334567777775
No 186
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.83 E-value=91 Score=27.49 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=28.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++|+..|+-
T Consensus 156 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~ 198 (274)
T PRK13647 156 DPDVIVLDEPMA-----YLDPRGQETLMEILDRLHNQ-GKTVIVATHDV 198 (274)
T ss_pred CCCEEEEECCCc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 578999999984 45555555555555555433 56788887753
No 187
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.70 E-value=1.1e+02 Score=25.34 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+.+.+++.+. .+.++++..|.
T Consensus 126 ~p~vlllDEP~~-----~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~ 167 (192)
T cd03232 126 KPSILFLDEPTS-----GLDSQAAYNIVRFLKKLAD-SGQAILCTIHQ 167 (192)
T ss_pred CCcEEEEeCCCc-----CCCHHHHHHHHHHHHHHHH-cCCEEEEEEcC
Confidence 567999999973 4555555556665665543 35677777776
No 188
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=33.45 E-value=3.2e+02 Score=26.90 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDV 104 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~ 104 (260)
.+.+--|.-....|+.-|..+.+.+.-. ..||.+++..+..+ .+.. ++-+ ..-+++. +|+-
T Consensus 21 ~~G~yWv~~dr~~Da~~l~~Q~i~~q~~---~~r~alI~~~~~~~---~ll~-l~~~----~gp~~l~-------lf~l- 81 (519)
T PRK15045 21 AGGVWWFNVDRHEDAISLANQTIASQAE---TAHVAVISMDSDPA---KIFQ-LDDS----QGPEKIR-------LFSM- 81 (519)
T ss_pred CCceEEEeccchhhHHHHHHHHHHhCCC---CCeEEEEecCCChH---Hhhc-Cccc----CCCceee-------eeec-
Confidence 4556555555688999999998886543 34599999666542 2211 1111 1111222 1210
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 105 DEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 105 ~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
+ ..+..+..|-..+..++.+ .+.++|+=.+..+.. +++..++..|++.++..+.+.+|++++++|...
T Consensus 82 p---~~~~al~~l~~dl~~~~~~------~~~l~il~~~~~~w~--~~~~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~ 149 (519)
T PRK15045 82 P---NHEKGLYYLPRDLQCSIDP------HNYLFILVCANNAWQ--NIPAERLRSWLDKMNKWSRLNHCSLLVINPGNN 149 (519)
T ss_pred C---CCHHHHHHhhHHHhhccCC------CCcEEEEEccHHHhh--cCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 1 1245566665555554442 455666666666542 689999999999999998899999999988653
No 189
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.30 E-value=94 Score=27.63 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=27.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.+..+.+.++|+..|+
T Consensus 162 ~P~llllDEPt~-----gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 162 EPKILILDEPTA-----GLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred CCCEEEEECCcc-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 578999999983 4554454555555555544445577777775
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=33.21 E-value=1.1e+02 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=20.5
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKR 49 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~ 49 (260)
++|.++.|....|+.-+-|+..+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999998888888877766553
No 191
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=33.20 E-value=2.3e+02 Score=27.17 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=9.3
Q ss_pred cEEEEEeChhHH
Q 024921 135 YVTIMIDDISLV 146 (260)
Q Consensus 135 ~~~iIiDdl~~L 146 (260)
..+|||||+..+
T Consensus 207 ~dvLiIDDiq~l 218 (450)
T PRK14087 207 NDVLIIDDVQFL 218 (450)
T ss_pred CCEEEEeccccc
Confidence 447899999866
No 192
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=32.87 E-value=90 Score=27.38 Aligned_cols=44 Identities=9% Similarity=0.131 Sum_probs=27.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|..= ++......+...++.++.+.+.++|+..|.-
T Consensus 169 ~p~lllLDEPt~~-----LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 169 EPKLLILDEAVSN-----LDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred CCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 4679999999843 4444444444555555444456777777753
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.85 E-value=96 Score=26.40 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=28.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |.+......|...++.+..+..+++++.+|.-
T Consensus 148 ~p~llllDEP~~-----gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 148 EPKVLLLDEPLG-----ALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 577999999973 55555555666666655333356788877754
No 194
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=32.72 E-value=2e+02 Score=23.36 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 111 EGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 111 ~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
+.+.+.++..+...+... ....+++||.|+.-+ -+.-...++..++..+. .+.-+++..|..
T Consensus 238 S~G~~~~l~l~~~l~~~~----~~~~illiDEpE~~L-----Hp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAK----KNGSILLIDEPENHL-----HPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp -HHHHHHHHHHHHHHTTT----TT-SEEEEESSSTTS-----SHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred CHHHHHHHHHHHHHhCcC----CCCeEEEecCCcCCC-----CHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 455666653333332221 122789999999665 34455666666654433 455688888864
No 195
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.71 E-value=98 Score=26.96 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=34.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++++.+|.-. + +...||-++-++
T Consensus 168 ~p~vllLDEP~~-----~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~--------~---i~~~~d~i~~l~ 225 (261)
T PRK14258 168 KPKVLLMDEPCF-----GLDPIASMKVESLIQSLRLRSELTMVIVSHNLH--------Q---VSRLSDFTAFFK 225 (261)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH--------H---HHHhcCEEEEEc
Confidence 578999999983 445445555555566554333456777776532 1 344566666654
No 196
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=32.69 E-value=92 Score=26.13 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=26.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.++. +.++|+.+|+.
T Consensus 158 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~ 199 (220)
T cd03245 158 DPPILLLDEPTS-----AMDMNSEERLKERLRQLLG--DKTLIIITHRP 199 (220)
T ss_pred CCCEEEEeCccc-----cCCHHHHHHHHHHHHHhcC--CCEEEEEeCCH
Confidence 567999999973 4555555555555555543 25677777754
No 197
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=32.64 E-value=99 Score=27.01 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=27.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-
T Consensus 161 ~p~llllDEPt~-----gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 161 ETAIMLLDEPTT-----WLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred CCCEEEEeCccc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 578999999973 44544444555555555443345677777653
No 198
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=32.50 E-value=99 Score=27.36 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=27.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++++.+|+-
T Consensus 172 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 172 PPRYLLLDEPTA-----ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred CCCEEEEcCccc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 578999999973 45544444555555554433356788877753
No 199
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=32.45 E-value=95 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=26.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++....+.+.++|+.+|..
T Consensus 166 ~p~vlllDEP~~-----~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 166 RPRLVFMDEPTG-----GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred CCCEEEEcCCCc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 577999999973 44444444444445544334456777777753
No 200
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=32.34 E-value=3.6e+02 Score=23.92 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=65.0
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhc----CCCCCCeEEEEEeccCchhHHHHHHHHhcccccc----------cc---
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSL----SPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ----------RD--- 87 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L----~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~----------~~--- 87 (260)
.|.++=|+.-.++.-+-++.|+....+ .|+-.+.|.|+-.-+-++.-+-+ +-+...|.++ ..
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~-~~l~hrL~q~~~~e~~~~~c~te~~ 115 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLA-KSLRHRLKQYSVGEVIAAKCPTEEQ 115 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHH-HHHHHHHHHhhhhhhhhhcCCcHhH
Confidence 468888888777777778888888776 34556678888877766654322 1122222222 11
Q ss_pred --------CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH
Q 024921 88 --------NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA 149 (260)
Q Consensus 88 --------~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~ 149 (260)
=++|.||-++.. ..-+..|++ ++.++..- .+-.++++|.++.+.|.
T Consensus 116 ~eEi~~~Cm~Rf~~v~C~~s-----------~~ll~sL~~-l~y~i~~~----p~~cll~~DslsaFyW~ 169 (293)
T KOG2859|consen 116 LEEIAGECMSRFRFVNCFAS-----------DDLLTSLID-LRYAIIND----PGICLLAMDSLSAFYWL 169 (293)
T ss_pred HHHHHHHHHhhEEEEEeecc-----------HHHHHHHHH-HHHHHhcC----CceeEEeecchhhheee
Confidence 145777777662 112233333 34444432 24578999999999996
No 201
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=32.12 E-value=1.1e+02 Score=25.63 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.++ +.++++..|.-
T Consensus 145 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~ 187 (207)
T PRK13539 145 NRPIWILDEPTA-----ALDAAAVALFAELIRAHLAQ-GGIVIAATHIP 187 (207)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 467999999983 44544444455555544333 56787777764
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.93 E-value=2e+02 Score=27.05 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=47.4
Q ss_pred CCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEecc----CchhHHHHHHHHhccccccc
Q 024921 21 PWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN----PFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 21 p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~----~~~hy~~~~~KlG~nL~~~~ 86 (260)
++.+++..+++....|+.=+.++..+...+....+..+|.++++-. ..+..+..++.+|+++....
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~ 201 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK 201 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecC
Confidence 4456788999999899999999999998876432223588887433 23456666778888876543
No 203
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.82 E-value=1.1e+02 Score=25.43 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=28.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
.+.++|+|.|.. |.+......+.+.++.+. +.+.++++..|...
T Consensus 145 ~p~~lilDEP~~-----~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~ 188 (200)
T PRK13540 145 KAKLWLLDEPLV-----ALDELSLLTIITKIQEHR-AKGGAVLLTSHQDL 188 (200)
T ss_pred CCCEEEEeCCCc-----ccCHHHHHHHHHHHHHHH-HcCCEEEEEeCCch
Confidence 578999999984 445445555555555543 23567888888654
No 204
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.66 E-value=1.1e+02 Score=26.93 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=28.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...++.++.+.+.++++..|..
T Consensus 160 ~p~lllLDEP~~-----gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 160 NPEIIIFDESTS-----MLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 568999999963 45555555666666665443335677777754
No 205
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.49 E-value=1e+02 Score=27.35 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+.+.++.+..+.+.++|+.+|+.
T Consensus 163 ~p~illlDEPt~-----~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 163 NPDIIVLDEPTA-----GLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred CCCEEEEECCcc-----cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 568999999984 44544444444445554334456788888754
No 206
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=31.48 E-value=96 Score=26.89 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=25.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|..= ++......+...++.+..+.+.++|+..|.-
T Consensus 169 ~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 169 HPRLVFMDEPTGG-----LDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 5679999999844 4433333444444444333355777777754
No 207
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.39 E-value=1.1e+02 Score=25.34 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=27.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+. .+.++++.+|+-
T Consensus 147 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~ 189 (204)
T PRK13538 147 RAPLWILDEPFT-----AIDKQGVARLEALLAQHAE-QGGMVILTTHQD 189 (204)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEecCh
Confidence 578999999973 4554454455555555433 345788888754
No 208
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=31.31 E-value=1e+02 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=27.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+.+.++|+..|+-
T Consensus 168 ~p~illLDEPt~-----~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 168 KPKLIVLDEAVS-----NLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 567999999973 45544444555555555433345777777753
No 209
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=31.29 E-value=1.1e+02 Score=26.28 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=26.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+..|+.
T Consensus 163 ~p~illLDEPt~-----~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~ 205 (248)
T PRK09580 163 EPELCILDESDS-----GLDIDALKIVADGVNSLRD-GKRSFIIVTHYQ 205 (248)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 467999999974 4444444455554554432 345777777763
No 210
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=31.17 E-value=1.2e+02 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=26.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. +++......+...+++...+.+.++++..|+.
T Consensus 89 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 89 NATFYLFDEPSA-----YLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCCEEEEECCcc-----cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 467999999973 44544444444444544333335777777754
No 211
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=30.99 E-value=2.1e+02 Score=23.55 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred CeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcE
Q 024921 57 NVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYV 136 (260)
Q Consensus 57 ~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~ 136 (260)
.+++.+++++..+ ..+ +--+...+..+...+.-|+...++.. . +... ....
T Consensus 24 ~~~~YiAT~~~~D---~em-~~RI~~H~~~R~~~w~tiE~~~~l~~--------------~-------~~~~----~~~~ 74 (167)
T PF02283_consen 24 GPVTYIATARPFD---EEM-RERIARHRQRRPKGWITIEEPRDLAE--------------A-------LEEL----SPGD 74 (167)
T ss_dssp SCEEEEESSHHHH---HHH-HHHHHHHHHHSSTCEEEEE-SS-GGG--------------T-------S-TT----S-T-
T ss_pred CCcEEEeCCCCCC---HHH-HHHHHHHHHhCCCCcEEEecchhHHH--------------H-------HHHh----ccCC
Confidence 3499999887762 111 22233344445566776666443221 1 1111 1246
Q ss_pred EEEEeChhHHHHHc----CCChHHHHHHHHHHHHhhcccCCeEEEEeecc----CCCCC-------ChhHHHHHcchhcc
Q 024921 137 TIMIDDISLVEVAA----NGGSDYVLDFLHYCHALTSEFDCSLITLNHED----IYSSM-------ERPTLILQMEYLAD 201 (260)
Q Consensus 137 ~iIiDdl~~Ll~~~----g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~----~~~~~-------e~~~l~~~L~h~a~ 201 (260)
+|+||+++.++... +....++..-+..+.....+..+.+|+++.+- .+.+. ..-++...|+..||
T Consensus 75 ~vLlDclt~wl~n~l~~~~~~~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~GiVP~~~~~R~yrd~lG~lnq~lA~~Ad 154 (167)
T PF02283_consen 75 VVLLDCLTLWLANLLFAEEDDEEDILEEIERLLEALRERNADLVIVSNEVGWGIVPMDPLTRRYRDLLGRLNQRLAARAD 154 (167)
T ss_dssp EEEEE-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--SEEEEEEE---SS---SSHHHHHHHHHHHHHHHHHHHH-S
T ss_pred eEEEeCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999987542 11123333333333322233444565555421 12221 11346677888888
Q ss_pred eEEEe
Q 024921 202 ILIKA 206 (260)
Q Consensus 202 ~~i~l 206 (260)
-++.+
T Consensus 155 ~V~~v 159 (167)
T PF02283_consen 155 EVYLV 159 (167)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
No 212
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.96 E-value=1.1e+02 Score=26.95 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=28.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+..+ +.++|+..|+-
T Consensus 155 ~p~llllDEPt~-----gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~ 197 (275)
T PRK13639 155 KPEIIVLDEPTS-----GLDPMGASQIMKLLYDLNKE-GITIIISTHDV 197 (275)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH
Confidence 568999999963 55655556666666666433 45777777753
No 213
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=30.95 E-value=1.1e+02 Score=25.40 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=26.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++|+..|..
T Consensus 154 ~p~llllDEPt~-----~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~ 196 (214)
T cd03292 154 SPTILIADEPTG-----NLDPDTTWEIMNLLKKINK-AGTTVVVATHAK 196 (214)
T ss_pred CCCEEEEeCCCC-----cCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 467999999984 4454444455555555432 245677777753
No 214
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=30.82 E-value=1.1e+02 Score=26.14 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=27.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+ +.++++..|.-
T Consensus 154 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~ 196 (240)
T PRK09493 154 KPKLMLFDEPTS-----ALDPELRHEVLKVMQDLAEE-GMTMVIVTHEI 196 (240)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 467999999983 45555555555555555432 45677777743
No 215
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=30.71 E-value=1.1e+02 Score=25.88 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=26.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+.+ .++|+..|+-
T Consensus 159 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~ 200 (227)
T cd03260 159 EPEVLLLDEPTS-----ALDPISTAKIEELIAELKKE--YTIVIVTHNM 200 (227)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHhhC--cEEEEEeccH
Confidence 467999999974 45544445555555655433 5677777753
No 216
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=30.54 E-value=1.2e+02 Score=25.36 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=26.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.... .+.++++..|.
T Consensus 155 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~ 196 (214)
T TIGR02673 155 SPPLLLADEPTG-----NLDPDLSERILDLLKRLNK-RGTTVIVATHD 196 (214)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 568999999974 4454444445555555433 34577777775
No 217
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=30.27 E-value=1.1e+02 Score=25.85 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=26.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|..= ++......+...++.++. .+.++++..|+.
T Consensus 131 ~p~llilDEP~~~-----LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~ 173 (223)
T TIGR03771 131 RPSVLLLDEPFTG-----LDMPTQELLTELFIELAG-AGTAILMTTHDL 173 (223)
T ss_pred CCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 5779999999844 444444445544555433 345777777753
No 218
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.23 E-value=1.2e+02 Score=25.49 Aligned_cols=43 Identities=9% Similarity=-0.088 Sum_probs=27.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. +++......+...++.... .+.++|+..|+.
T Consensus 155 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~ 197 (214)
T PRK13543 155 PAPLWLLDEPYA-----NLDLEGITLVNRMISAHLR-GGGAALVTTHGA 197 (214)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh
Confidence 567999999983 4554454455555554433 356788888754
No 219
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=30.13 E-value=1.2e+02 Score=25.89 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=34.7
Q ss_pred EEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 136 VTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 136 ~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
.++|+|.|.. |++......+.+.++.++. ...++++..|+.. +. ..||-++.+++
T Consensus 159 ~llllDEPt~-----gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~--------~~----~~~d~i~~l~~ 213 (226)
T cd03270 159 VLYVLDEPSI-----GLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED--------TI----RAADHVIDIGP 213 (226)
T ss_pred CEEEEeCCcc-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH--------HH----HhCCEEEEeCC
Confidence 5999999963 5565555556665665543 3557777777541 22 14788887744
No 220
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=30.12 E-value=1.2e+02 Score=25.40 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=26.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHH-HHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVL-DFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~-~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|+|..= ++..... .+.+.++.+..+...++++..|.
T Consensus 139 ~p~illlDEP~~~-----LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 139 NCGILALDEPTTN-----LDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred CCCEEEEcCCccc-----cCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 5679999999844 4444444 45555555433334578888875
No 221
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.09 E-value=1.3e+02 Score=23.76 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=26.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |.+......+...++..... +.++++..|.-
T Consensus 98 ~~~i~ilDEp~~-----~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~ 140 (157)
T cd00267 98 NPDLLLLDEPTS-----GLDPASRERLLELLRELAEE-GRTVIIVTHDP 140 (157)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 467999999983 44544444555555544333 45777777753
No 222
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=29.96 E-value=3.7e+02 Score=23.25 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=41.7
Q ss_pred CcEEEEEeChhHHHHHc----------CC-C---hHHH-HHHHHHHHHhhcccCCeEEEEeeccC---CCCCC-------
Q 024921 134 DYVTIMIDDISLVEVAA----------NG-G---SDYV-LDFLHYCHALTSEFDCSLITLNHEDI---YSSME------- 188 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~----------g~-~---~~~v-~~fi~~l~~~~~~~~~~lv~l~h~~~---~~~~e------- 188 (260)
..-+||||.++.|.... |. . -..+ ..|+..++.+.+ .+.+||+.+|... ..+..
T Consensus 81 ~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tAhe~~~~~~de~G~~~~r~~ 159 (220)
T TIGR01618 81 KYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATAWELTNQSSGESGQIYNRYQ 159 (220)
T ss_pred cCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEEeeccccccCCCCCCcceec
Confidence 45689999999996421 11 1 1112 334444455433 5568999999643 11111
Q ss_pred ---hhHHHHHcchhcceEEEec
Q 024921 189 ---RPTLILQMEYLADILIKAE 207 (260)
Q Consensus 189 ---~~~l~~~L~h~a~~~i~l~ 207 (260)
...-.+.+.-.+|+|.++.
T Consensus 160 P~i~~K~~n~l~G~~DvV~rl~ 181 (220)
T TIGR01618 160 PDIREKVLNAFLGLTDVVGRIV 181 (220)
T ss_pred hhhhhhHHHhhcccccEEEEEE
Confidence 1234556777788888764
No 223
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=29.96 E-value=1.1e+02 Score=26.89 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++++..|+-
T Consensus 160 ~p~llllDEPt~-----~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~ 202 (272)
T PRK15056 160 QGQVILLDEPFT-----GVDVKTEARIISLLRELRDE-GKTMLVSTHNL 202 (272)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 467999999983 45555555566666665433 45677777753
No 224
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.95 E-value=5.1e+02 Score=24.96 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=47.4
Q ss_pred chhhHHhhhCCCCCCCCC--CCCCcEEEEeecCCCCccHHHHHHHHHh-cCCCCCCeEEEEEecc--C--chhHHHHHHH
Q 024921 5 YLNLLDRALGLDGPSEPW--PLSGRVVLIEDCVETSGSFVLHQLVKRS-LSPTSSNVIIFVAFAN--P--FSHYDRILRK 77 (260)
Q Consensus 5 ~~~~l~~~l~~~~~~~p~--~~~~~l~litd~~~t~~sfLl~~~l~~~-L~~~~~~~Vvlvs~~~--~--~~hy~~~~~K 77 (260)
+...|.+.+..+....+. ...+..+++....|+.=+-+..++...+ +..+. +|+++++-. . ....+.-+..
T Consensus 200 l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~--~V~Lit~Dt~R~aA~eQLk~yAe~ 277 (432)
T PRK12724 200 AVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK--SVSLYTTDNYRIAAIEQLKRYADT 277 (432)
T ss_pred HHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC--eEEEecccchhhhHHHHHHHHHHh
Confidence 344555556543321111 1246788888988999999999998766 44443 498888653 2 2223444566
Q ss_pred Hhccccc
Q 024921 78 LGCNLVT 84 (260)
Q Consensus 78 lG~nL~~ 84 (260)
+|+++..
T Consensus 278 lgvp~~~ 284 (432)
T PRK12724 278 MGMPFYP 284 (432)
T ss_pred cCCCeee
Confidence 7887643
No 225
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=29.89 E-value=1.1e+02 Score=27.52 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=27.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++++..|.
T Consensus 142 ~p~lllLDEPt~-----gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~ 183 (302)
T TIGR01188 142 QPDVLFLDEPTT-----GLDPRTRRAIWDYIRALKEE-GVTILLTTHY 183 (302)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHhC-CCEEEEECCC
Confidence 578999999983 55555555555555555433 5678887774
No 226
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.61 E-value=1.1e+02 Score=26.69 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=27.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+..|+-
T Consensus 154 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~ 196 (271)
T PRK13638 154 QARYLLLDEPTA-----GLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI 196 (271)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 578999999973 4555555555555665543 345677777753
No 227
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=29.42 E-value=1.2e+02 Score=24.68 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=26.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...++.++. .+.++++..|..
T Consensus 122 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~ 164 (182)
T cd03215 122 DPRVLILDEPTR-----GVDVGAKAEIYRLIRELAD-AGKAVLLISSEL 164 (182)
T ss_pred CCCEEEECCCCc-----CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 567999999984 4444444444455555433 245677777753
No 228
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=29.29 E-value=1.2e+02 Score=26.32 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+.. .+.++|+..|.-
T Consensus 156 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~ 198 (255)
T PRK11231 156 DTPVVLLDEPTT-----YLDINHQVELMRLMRELNT-QGKTVVTVLHDL 198 (255)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 578999999973 4554444455555555433 245777777753
No 229
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=29.27 E-value=1.9e+02 Score=25.77 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=39.7
Q ss_pred chhhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEec
Q 024921 5 YLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFA 65 (260)
Q Consensus 5 ~~~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~ 65 (260)
+...|...++......++.+.++.+++....|+.=+.++..+...+....++.+|.+|++-
T Consensus 173 ~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 173 LREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred HHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3445666665333233333467788888888999999999888776543112349999864
No 230
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=29.19 E-value=1.3e+02 Score=24.83 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=26.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...++.+.. ...++++..|+-
T Consensus 129 ~p~illlDEP~~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~ 171 (194)
T cd03213 129 NPSLLFLDEPTS-----GLDSSSALQVMSLLRRLAD-TGRTIICSIHQP 171 (194)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 467999999983 4454444445555554432 345777777753
No 231
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=29.13 E-value=1.7e+02 Score=24.51 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=36.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGL 213 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~ 213 (260)
..+++|+||++.=+ +......+...++.+. .++-+++..|... +...|+..+.|..-+.|.
T Consensus 158 ~~p~~ilDEvd~~L-----D~~~~~~l~~~l~~~~--~~~Q~ii~Th~~~------------~~~~a~~~~~v~~~~~g~ 218 (220)
T PF02463_consen 158 PSPFLILDEVDAAL-----DEQNRKRLADLLKELS--KQSQFIITTHNPE------------MFEDADKLIGVTMVENGV 218 (220)
T ss_dssp --SEEEEESTTTTS------HHHHHHHHHHHHHHT--TTSEEEEE-S-HH------------HHTT-SEEEEEEECCTTC
T ss_pred cccccccccccccc-----cccccccccccccccc--ccccccccccccc------------cccccccccccccccccc
Confidence 45789999998554 4444556666666542 2345777776542 345668888887777775
Q ss_pred c
Q 024921 214 A 214 (260)
Q Consensus 214 a 214 (260)
+
T Consensus 219 ~ 219 (220)
T PF02463_consen 219 S 219 (220)
T ss_dssp E
T ss_pred C
Confidence 4
No 232
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=4.8e+02 Score=24.34 Aligned_cols=90 Identities=12% Similarity=0.273 Sum_probs=52.9
Q ss_pred EEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHH---HHHHHHhccccccccCCceEEeecccccCCCCC
Q 024921 29 VLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYD---RILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVD 105 (260)
Q Consensus 29 ~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~---~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~ 105 (260)
++|....||.=+-.+..+.+..-....+.-++-|-+......|+ .+++++| ..+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~------------------~~p~---- 102 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG------------------KVPL---- 102 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC------------------CCCC----
Confidence 77777777776665555555544333322267777776655554 3455555 1111
Q ss_pred CCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH
Q 024921 106 EGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV 148 (260)
Q Consensus 106 ~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~ 148 (260)
.| ....++|+.+.+.+... ....+||+|+++.|..
T Consensus 103 ~g----~~~~~~~~~l~~~~~~~----~~~~IvvLDEid~L~~ 137 (366)
T COG1474 103 TG----DSSLEILKRLYDNLSKK----GKTVIVILDEVDALVD 137 (366)
T ss_pred CC----CchHHHHHHHHHHHHhc----CCeEEEEEcchhhhcc
Confidence 11 12345666666666542 3688999999999974
No 233
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=28.88 E-value=1.2e+02 Score=25.91 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+..|+.. + +...||-++.++
T Consensus 162 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~--------~---~~~~~d~i~~l~ 218 (250)
T PRK11264 162 RPEVILFDEPTS-----ALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS--------F---ARDVADRAIFMD 218 (250)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--------H---HHHhcCEEEEEE
Confidence 467999999974 4444444455555555433 2456777777531 1 234466666665
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=28.71 E-value=1e+02 Score=29.80 Aligned_cols=43 Identities=7% Similarity=-0.061 Sum_probs=29.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|..- +++.....+++.++.++.+.+.+||+..|+
T Consensus 186 ~p~lllLDEPt~~-----LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 186 EPFLFLADEPTGT-----LDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred CCCEEEeeCCccc-----CCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5779999999844 454555555555566544445678888884
No 235
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.61 E-value=1.2e+02 Score=26.65 Aligned_cols=42 Identities=7% Similarity=0.137 Sum_probs=27.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+..|.
T Consensus 163 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~ 204 (280)
T PRK13649 163 EPKILVLDEPTA-----GLDPKGRKELMTLFKKLHQ-SGMTIVLVTHL 204 (280)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEecc
Confidence 467999999983 4555555555555555543 24577777775
No 236
>PF06565 DUF1126: Repeat of unknown function (DUF1126); InterPro: IPR010554 This group contains several eukaryote specific repeats of around 35 residues in length. The function of this family is unknown.; PDB: 2Z14_A 2Z13_A.
Probab=28.60 E-value=31 Score=20.62 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=11.8
Q ss_pred EeEEEecCcEEEeeCC
Q 024921 242 FHYKVKENTVEYFYPG 257 (260)
Q Consensus 242 ~lY~v~D~~Vk~F~rG 257 (260)
+.|.+.|+++.+|++.
T Consensus 2 i~y~L~DdTi~I~E~~ 17 (33)
T PF06565_consen 2 ISYYLADDTISIFEPP 17 (33)
T ss_dssp EEEETTTTEEEEE---
T ss_pred EEEEccCCCEEEEEec
Confidence 5799999999999874
No 237
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=28.44 E-value=1.2e+02 Score=25.48 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=27.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......|...++.++. .+.++++..|+.
T Consensus 142 ~p~llllDEP~~-----~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~ 184 (223)
T TIGR03740 142 HPKLLILDEPTN-----GLDPIGIQELRELIRSFPE-QGITVILSSHIL 184 (223)
T ss_pred CCCEEEECCCcc-----CCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 567999999973 5555555555555565533 345677777753
No 238
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.34 E-value=1.2e+02 Score=25.27 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=26.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++..+. +.++++..|+-
T Consensus 148 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~ 189 (211)
T cd03264 148 DPSILIVDEPTA-----GLDPEERIRFRNLLSELGE--DRIVILSTHIV 189 (211)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH
Confidence 577999999984 4454444455555555543 35677777743
No 239
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=28.30 E-value=1.3e+02 Score=25.51 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=26.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|..= ++......+.+.++.+.. .+.++++..|+-
T Consensus 162 ~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~ 204 (243)
T TIGR01978 162 EPKLAILDEIDSG-----LDIDALKIVAEGINRLRE-PDRSFLIITHYQ 204 (243)
T ss_pred CCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH-CCcEEEEEEecH
Confidence 4679999999844 444444455555555532 345677777753
No 240
>PRK07413 hypothetical protein; Validated
Probab=28.28 E-value=3.5e+02 Score=25.61 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=92.6
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCC---CCCeEEEEEeccCc-hhHH--HHHHHHh------ccccccccCCceE
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPT---SSNVIIFVAFANPF-SHYD--RILRKLG------CNLVTQRDNKRFI 92 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~---~~~~Vvlvs~~~~~-~hy~--~~~~KlG------~nL~~~~~~g~~~ 92 (260)
.|-+.+-|....-..+=-+=..+..+=.+. ..+||+++=|+-+. ..|- .+++|++ +.+..+.. .+.
T Consensus 19 ~Gli~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQFlKg~~~~~GE~~~l~~l~~~~~~~i~~~~~g~--~~~ 96 (382)
T PRK07413 19 KGQLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVRTGR--AEF 96 (382)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEEEcCCCCCCcHHHHHHhccccCCCceEEEECCC--CCe
Confidence 455566665443333333333333333332 23479999999873 3343 3445664 33333221 111
Q ss_pred EeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHHHHHHHHHHHhhccc
Q 024921 93 FFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 93 fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v~~fi~~l~~~~~~~ 171 (260)
|. .. ..........+..++..++++.. ...-+||+|.+...+.. | ++..+|++++..- ..
T Consensus 97 ~~-------~~-~~~~~~~~~a~~~~~~a~~~i~s-----g~ydlvILDEi~~Al~~-gll~~eevl~~L~~r-----P~ 157 (382)
T PRK07413 97 FG-------AD-EITKFDRQEAQRGWDIAKGAIAS-----GLYSVVVLDELNPVLDL-GLLPVDEVVNTLKSR-----PE 157 (382)
T ss_pred ee-------CC-CCcHHHHHHHHHHHHHHHHHHhC-----CCCCEEEEehhHHHHHC-CCccHHHHHHHHHhC-----CC
Confidence 11 00 00000011234455555555542 24568999999999854 5 6788888887421 11
Q ss_pred CCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCcc------ceeEEEEEEecCC
Q 024921 172 DCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLAT------DVHGQLTVLNKGT 228 (260)
Q Consensus 172 ~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~------DVtG~L~v~~~~~ 228 (260)
...||+ .--+.+. .|...||+|=.+++...-++. ...|.+.|+.|..
T Consensus 158 ~~evVL-TGR~ap~---------~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~g~i~VYTG~G 210 (382)
T PRK07413 158 GLEIII-TGRAAPQ---------SLLDIADLHSEMRPHRRPTASELGVPFNSSGGIEIYTGEG 210 (382)
T ss_pred CCEEEE-eCCCCCH---------HHHHhCCeeEEeceecCCCcCCCCcccCCCCeEEEEeCCC
Confidence 122333 3233332 267789999998887665554 4579999998863
No 241
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=28.20 E-value=1.3e+02 Score=26.08 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++++..|+.
T Consensus 170 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~ 212 (257)
T PRK10619 170 EPEVLLFDEPTS-----ALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM 212 (257)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 467999999973 5555555555555555533 356777777753
No 242
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=28.12 E-value=1.3e+02 Score=25.45 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=32.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++. .+.++|+..|+-. .+...||-++.++
T Consensus 151 ~p~llllDEPt~-----~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-----------~~~~~~d~i~~l~ 207 (232)
T cd03218 151 NPKFLLLDEPFA-----GVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-----------ETLSITDRAYIIY 207 (232)
T ss_pred CCCEEEecCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-----------HHHHhCCEEEEEE
Confidence 578999999984 4444444444444454433 3456777777431 1344566666664
No 243
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=27.98 E-value=1.4e+02 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=19.9
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKR 49 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~ 49 (260)
.+|+.+.|....|+.-|=|+..+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999998888888777765543
No 244
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=27.96 E-value=1.2e+02 Score=27.63 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=26.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.+||+|.|..=+ +...-..++..++.+..+.+.++|+.+|+
T Consensus 176 ~P~llilDEPts~L-----D~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 176 QPRLLIADEPTNAM-----EPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred CCCEEEEeCCCCcC-----CHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 56799999998544 32222333444444433456688888885
No 245
>PRK08727 hypothetical protein; Validated
Probab=27.95 E-value=1.7e+02 Score=25.16 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHH
Q 024921 113 GLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTL 192 (260)
Q Consensus 113 ~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l 192 (260)
.+..+...+.+.++... ..-+|||||+..+. +-...+..-| .+.......+..+|+.+...+. +...+
T Consensus 76 ~~~~~~~~~~~~~~~l~----~~dlLiIDDi~~l~---~~~~~~~~lf--~l~n~~~~~~~~vI~ts~~~p~---~l~~~ 143 (233)
T PRK08727 76 PLQAAAGRLRDALEALE----GRSLVALDGLESIA---GQREDEVALF--DFHNRARAAGITLLYTARQMPD---GLALV 143 (233)
T ss_pred eHHHhhhhHHHHHHHHh----cCCEEEEeCccccc---CChHHHHHHH--HHHHHHHHcCCeEEEECCCChh---hhhhh
Q ss_pred HHHcchh--cceEEEeccCC
Q 024921 193 ILQMEYL--ADILIKAEPLS 210 (260)
Q Consensus 193 ~~~L~h~--a~~~i~l~pL~ 210 (260)
...|..+ +-+++.+.|++
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~ 163 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLD 163 (233)
T ss_pred hHHHHHHHhcCceEEecCCC
No 246
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=27.83 E-value=1.3e+02 Score=25.32 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......|...++..+.+ +.++|+.+|..
T Consensus 161 ~p~illlDEP~~-----gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~ 203 (226)
T cd03234 161 DPKVLILDEPTS-----GLDSFTALNLVSTLSQLARR-NRIVILTIHQP 203 (226)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCC
Confidence 467999999983 45544445555555555433 45777777754
No 247
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=27.81 E-value=1.2e+02 Score=27.73 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=26.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.+..+.+.++++..|+
T Consensus 158 ~p~iLlLDEPts-----~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 158 NPKVLLCDEATS-----ALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 577999999984 3444444444444555444445678877774
No 248
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=27.67 E-value=1.3e+02 Score=25.73 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=27.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+..|+.
T Consensus 169 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~ 211 (252)
T CHL00131 169 DSELAILDETDS-----GLDIDALKIIAEGINKLMT-SENSIILITHYQ 211 (252)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH
Confidence 567999999963 5555555555555555432 345777777753
No 249
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=27.34 E-value=1.4e+02 Score=25.83 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=26.9
Q ss_pred cEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 135 YVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
+.++|+|.|.. |++......+...++.++.+ +.++++..|.
T Consensus 178 p~~lllDEPt~-----~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~ 218 (247)
T cd03275 178 APFFVLDEVDA-----ALDNTNVGKVASYIREQAGP-NFQFIVISLK 218 (247)
T ss_pred CCEEEEecccc-----cCCHHHHHHHHHHHHHhccC-CcEEEEEECC
Confidence 56899999984 45555555555555555432 5578888875
No 250
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=27.18 E-value=1.5e+02 Score=24.87 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=28.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. +.++.....+.+.+..+..+ +.++++..|..
T Consensus 151 ~~~~lllDEp~~-----~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~ 193 (213)
T cd03279 151 RLEALFIDEGFG-----TLDPEALEAVATALELIRTE-NRMVGVISHVE 193 (213)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEECch
Confidence 356899999982 45666666666666665433 45788888843
No 251
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=27.13 E-value=1.2e+02 Score=29.13 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.++.+.++++|+..|+-
T Consensus 419 ~p~lllLDEPt~-----gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 419 HPTLLILDEPLQ-----GLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred CCCEEEEcCccc-----cCCHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 577999999973 55655555666666666544344577777764
No 252
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=27.00 E-value=1.2e+02 Score=29.44 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=35.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-. + +...||-++.++
T Consensus 445 ~p~lLllDEPt~-----~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~--------~---~~~~~d~i~~l~ 502 (520)
T TIGR03269 445 EPRIVILDEPTG-----TMDPITKVDVTHSILKAREEMEQTFIIVSHDMD--------F---VLDVCDRAALMR 502 (520)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH--------H---HHHhCCEEEEEE
Confidence 578999999984 445445455555555554444567888777542 2 223466666664
No 253
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=26.41 E-value=1.4e+02 Score=25.35 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+...++.+. + +.++++..|+-
T Consensus 156 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~ 197 (237)
T cd03252 156 NPRILIFDEATS-----ALDYESEHAIMRNMHDIC-A-GRTVIIIAHRL 197 (237)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH
Confidence 467999999984 455555555555555553 2 45677777643
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=26.31 E-value=1.5e+02 Score=24.96 Aligned_cols=42 Identities=5% Similarity=0.066 Sum_probs=27.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|+.
T Consensus 168 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~ 209 (226)
T cd03248 168 NPQVLILDEATS-----ALDAESEQQVQQALYDWPE--RRTVLVIAHRL 209 (226)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHcC--CCEEEEEECCH
Confidence 577999999984 4555555555555665532 35777777754
No 255
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=25.95 E-value=1.6e+02 Score=26.06 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=37.6
Q ss_pred cEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 135 YVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
+.++|+|.|. .|++..+...+...++.+.. .+.++|+..|.-. +. ..||.++.+.|
T Consensus 191 p~lllLDEPt-----sgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~--------~i----~~aD~ii~Lgp 246 (261)
T cd03271 191 KTLYILDEPT-----TGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLD--------VI----KCADWIIDLGP 246 (261)
T ss_pred CcEEEEECCC-----CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH--------HH----HhCCEEEEecC
Confidence 5799999997 36676777666666666543 3457777776431 32 24899988865
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=25.91 E-value=1.6e+02 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVK 48 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~ 48 (260)
++|+.+.|....|+.=+=|+..+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3688999998888887776666544
No 257
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=25.89 E-value=1.4e+02 Score=27.32 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=19.0
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVK 48 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~ 48 (260)
.+|..+-|....|+.-|-|+..++.
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHc
Confidence 3688888888888888887766655
No 258
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.53 E-value=1.5e+02 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+.. +.++++..|.-
T Consensus 160 ~p~lllLDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~ 201 (246)
T PRK14269 160 KPKLLLLDEPTS-----ALDPISSGVIEELLKELSH--NLSMIMVTHNM 201 (246)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHhC--CCEEEEEecCH
Confidence 578999999984 4454555555555655532 45777777753
No 259
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.53 E-value=1.6e+02 Score=25.95 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=27.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++|+..|+-
T Consensus 154 ~p~lllLDEPt~-----gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~ 196 (274)
T PRK13644 154 EPECLIFDEVTS-----MLDPDSGIAVLERIKKLHE-KGKTIVYITHNL 196 (274)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH
Confidence 578999999983 5555555555555555532 345777777753
No 260
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=25.02 E-value=1.5e+02 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=26.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+.+|+-
T Consensus 155 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~ 197 (256)
T TIGR03873 155 EPKLLLLDEPTN-----HLDVRAQLETLALVRELAA-TGVTVVAALHDL 197 (256)
T ss_pred CCCEEEEcCccc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 468999999984 4444444444444554432 245777777753
No 261
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=24.96 E-value=1.4e+02 Score=26.67 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.++. .+.++++.+|.
T Consensus 153 ~p~lllLDEPt~-----gLD~~~~~~l~~~l~~~~~-~g~til~~sH~ 194 (303)
T TIGR01288 153 DPQLLILDEPTT-----GLDPHARHLIWERLRSLLA-RGKTILLTTHF 194 (303)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 577999999983 4554444455555555533 34578887774
No 262
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=24.95 E-value=1.5e+02 Score=27.07 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=25.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+-+||+|.|..=+ +..-...++..++.+..+.+.++++..|+
T Consensus 171 ~P~llilDEPts~L-----D~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 171 RPKLLIADEPTTAL-----DVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46799999998544 32322334444444444455678888874
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=24.84 E-value=1.9e+02 Score=23.86 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDI 183 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~ 183 (260)
.+.++|+|.|.. |.+......+.+.++.... .+.++|+.+|...
T Consensus 145 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~ 188 (198)
T TIGR01189 145 RAPLWILDEPTT-----ALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDL 188 (198)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccc
Confidence 567999999984 4444444444444554432 3457888888653
No 264
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=24.79 E-value=1.3e+02 Score=29.20 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=35.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+..|+-. + +...||.++-++
T Consensus 443 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~--------~---~~~~~d~i~~l~ 500 (529)
T PRK15134 443 KPSLIILDEPTS-----SLDKTVQAQILALLKSLQQKHQLAYLFISHDLH--------V---VRALCHQVIVLR 500 (529)
T ss_pred CCCEEEeeCCcc-----ccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH--------H---HHHhcCeEEEEE
Confidence 578999999984 445444445555555555444567888777532 2 233467777664
No 265
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=24.72 E-value=1.5e+02 Score=27.36 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=27.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|. .|+++.....|...++.+.. .+.++++.+|.
T Consensus 190 ~P~lLiLDEPt-----~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~ 231 (340)
T PRK13536 190 DPQLLILDEPT-----TGLDPHARHLIWERLRSLLA-RGKTILLTTHF 231 (340)
T ss_pred CCCEEEEECCC-----CCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 57899999998 35665555555555555543 34577777773
No 266
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.64 E-value=1.6e+02 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=27.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+.. +.++|+.+|..
T Consensus 166 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~ 207 (252)
T PRK14272 166 EPEILLMDEPTS-----ALDPASTARIEDLMTDLKK--VTTIIIVTHNM 207 (252)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH
Confidence 567999999984 4454455555566665532 35777777753
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.50 E-value=1.8e+02 Score=23.37 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=25.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. +.++++..|+.
T Consensus 114 ~p~llllDEP~~-----gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~ 155 (171)
T cd03228 114 DPPILILDEATS-----ALDPETEALILEALRALAK--GKTVIVIAHRL 155 (171)
T ss_pred CCCEEEEECCCc-----CCCHHHHHHHHHHHHHhcC--CCEEEEEecCH
Confidence 467999999984 4454444455555555432 35677777654
No 268
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.48 E-value=1.6e+02 Score=26.13 Aligned_cols=42 Identities=5% Similarity=0.154 Sum_probs=25.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|..= +++.....+...++.+.. .+.++|+..|+
T Consensus 162 ~p~illLDEPt~g-----LD~~~~~~l~~~l~~l~~-~g~til~vtHd 203 (288)
T PRK13643 162 EPEVLVLDEPTAG-----LDPKARIEMMQLFESIHQ-SGQTVVLVTHL 203 (288)
T ss_pred CCCEEEEECCccC-----CCHHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 4679999999843 444443344444444432 34577777775
No 269
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=24.44 E-value=1.7e+02 Score=24.88 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=33.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|+|.. |++......+.+.++.+.. ..++|+.+|... + +...||-++.++
T Consensus 161 ~p~~lllDEPt~-----~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~--------~---~~~~~d~i~~l~ 216 (242)
T TIGR03411 161 DPKLLLLDEPVA-----GMTDEETEKTAELLKSLAG--KHSVVVVEHDME--------F---VRSIADKVTVLH 216 (242)
T ss_pred CCCEEEecCCcc-----CCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH--------H---HHHhCCEEEEEE
Confidence 467999999983 4554444555555555533 346777777531 1 334567666665
No 270
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=24.42 E-value=2.9e+02 Score=25.41 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-cCCC-------hHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 113 GLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-ANGG-------SDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 113 ~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~g~~-------~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+..++.+|...+--+- +..+--+||||.++.++-. +... .+.+-+.-..|+.++++..++||+....
T Consensus 187 d~d~l~~iv~~qlPiL~-~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQV 262 (351)
T KOG1564|consen 187 DVDHLLHIVNRQLPILL-NRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQV 262 (351)
T ss_pred chhhHHHHHhhhcccee-ccCcceEEEEehhhHHHHHHhccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeecc
Confidence 35667777777654332 2234568999999999743 2212 3344555567888889999999988764
No 271
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=24.26 E-value=1.6e+02 Score=25.40 Aligned_cols=43 Identities=7% Similarity=0.022 Sum_probs=26.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+..+ +.++|+..|+-
T Consensus 151 ~p~llllDEPt~-----~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~ 193 (248)
T PRK03695 151 AGQLLLLDEPMN-----SLDVAQQAALDRLLSELCQQ-GIAVVMSSHDL 193 (248)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 347999999983 45555545555555555332 45777777753
No 272
>PRK06460 hypothetical protein; Provisional
Probab=24.24 E-value=3.9e+02 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCccHHHHHHHHHhcCCCCCCeEEEEEe--ccCchhHHHHHHHHhcccc
Q 024921 37 TSGSFVLHQLVKRSLSPTSSNVIIFVAF--ANPFSHYDRILRKLGCNLV 83 (260)
Q Consensus 37 t~~sfLl~~~l~~~L~~~~~~~Vvlvs~--~~~~~hy~~~~~KlG~nL~ 83 (260)
++|.-.+..++...++.++. |++-.- .-++..|...+++.|+...
T Consensus 67 ~sG~~ai~~~l~al~~~Gd~--Vl~~~~~~~~ty~~~~~~~~~~G~~v~ 113 (376)
T PRK06460 67 SSGMGAISTTALALLKPGNS--VLVHRDMFGRSYRFFTDYLKNWGVNVD 113 (376)
T ss_pred CCHHHHHHHHHHHHhCCCCE--EEEecCCcCcHHHHHHHHHHhhCcEEE
Confidence 44455667677766665543 554322 2467788889999997654
No 273
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.23 E-value=1.6e+02 Score=26.08 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=26.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+.. ...++|+.+|+
T Consensus 163 ~p~lLlLDEPt~-----gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~ 204 (287)
T PRK13641 163 EPEILCLDEPAA-----GLDPEGRKEMMQLFKDYQK-AGHTVILVTHN 204 (287)
T ss_pred CCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 467999999983 4555555555555555532 34567777774
No 274
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=24.14 E-value=1.7e+02 Score=26.37 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....++..++.+.. ...++|+..|+-
T Consensus 183 ~P~lLlLDEPt~-----~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~ 225 (305)
T PRK13651 183 EPDFLVFDEPTA-----GLDPQGVKEILEIFDNLNK-QGKTIILVTHDL 225 (305)
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCH
Confidence 468999999984 4454444455555555432 355788877753
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=24.10 E-value=83 Score=29.93 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCCCccH---HHHHHHHHhcCCC--CCCeEEEEEe--ccCchhH-HHHHHHHhccccccccCCceEEeecccccCCCCCC
Q 024921 35 VETSGSF---VLHQLVKRSLSPT--SSNVIIFVAF--ANPFSHY-DRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDE 106 (260)
Q Consensus 35 ~~t~~sf---Ll~~~l~~~L~~~--~~~~Vvlvs~--~~~~~hy-~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~ 106 (260)
....+.| ++.|+.++++... ...+.+++-- -...++- +++++++|+++ ..+++-. ++++. -
T Consensus 121 ~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~---------i~vsa~e-L~sk~-v 189 (413)
T PLN00020 121 YYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEP---------IVMSAGE-LESEN-A 189 (413)
T ss_pred cccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---------EEEEHHH-hhcCc-C
Confidence 3445555 3557778877422 1122333311 1233444 56788888874 4566554 33321 1
Q ss_pred CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH
Q 024921 107 GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA 149 (260)
Q Consensus 107 ~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~ 149 (260)
| ..++.++.+|.......+. ...+++|+||+++.+.-.
T Consensus 190 G-EsEk~IR~~F~~A~~~a~~----~~aPcVLFIDEIDA~~g~ 227 (413)
T PLN00020 190 G-EPGKLIRQRYREAADIIKK----KGKMSCLFINDLDAGAGR 227 (413)
T ss_pred C-cHHHHHHHHHHHHHHHhhc----cCCCeEEEEehhhhcCCC
Confidence 1 1245678888876554321 136899999999998643
No 276
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=7.3e+02 Score=26.00 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=37.1
Q ss_pred CcEEEEEeChhHHHHHc-------CCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEe
Q 024921 134 DYVTIMIDDISLVEVAA-------NGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKA 206 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~-------g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l 206 (260)
.+.+|++||++.|..+- |....-+..|+..+.....+.+..+.+++.......- +. .....+.-+.++++
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl-~~--~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTL-NP--LLVSPLLFQIVIAL 570 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhc-Ch--hhcCccceEEEEec
Confidence 58899999999997521 1113334566655544422333334444433211000 01 12223355666666
Q ss_pred ccCCC
Q 024921 207 EPLST 211 (260)
Q Consensus 207 ~pL~T 211 (260)
+++.+
T Consensus 571 ~ap~~ 575 (952)
T KOG0735|consen 571 PAPAV 575 (952)
T ss_pred CCcch
Confidence 66553
No 277
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=23.97 E-value=4e+02 Score=21.76 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=22.7
Q ss_pred EEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCch
Q 024921 28 VVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFS 69 (260)
Q Consensus 28 l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~ 69 (260)
+++|+...++.-|=+-.+++.. .+. +++.++..+.++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~--~~~y~at~~~~d 37 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGG--PVTYIATAEAFD 37 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCC--CeEEEEccCcCC
Confidence 3567766566666656666544 223 488888887653
No 278
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=23.91 E-value=1.7e+02 Score=25.11 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. +.++++..|+-
T Consensus 162 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~ 203 (247)
T TIGR00972 162 EPEVLLLDEPTS-----ALDPIATGKIEELIQELKK--KYTIVIVTHNM 203 (247)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHh--cCeEEEEecCH
Confidence 467999999983 4555555556666665533 25677777743
No 279
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.85 E-value=1.7e+02 Score=26.65 Aligned_cols=43 Identities=5% Similarity=0.062 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |+++.....+...++.+.. .+.++|+.+|+-
T Consensus 194 ~p~iLLLDEPts-----gLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~ 236 (320)
T PRK13631 194 QPEILIFDEPTA-----GLDPKGEHEMMQLILDAKA-NNKTVFVITHTM 236 (320)
T ss_pred CCCEEEEECCcc-----CCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH
Confidence 578999999973 4555555455555554432 355787777753
No 280
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.69 E-value=1.6e+02 Score=24.85 Aligned_cols=42 Identities=7% Similarity=0.087 Sum_probs=26.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+.. +.++++..|..
T Consensus 155 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~ 196 (236)
T cd03253 155 NPPILLLDEATS-----ALDTHTEREIQAALRDVSK--GRTTIVIAHRL 196 (236)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH
Confidence 578999999984 4454455555555655533 45677777644
No 281
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.51 E-value=1.8e+02 Score=24.53 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=26.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+. + +.++|+..|..
T Consensus 157 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~ 198 (229)
T cd03254 157 DPKILILDEATS-----NIDTETEKLIQEALEKLM-K-GRTSIIIAHRL 198 (229)
T ss_pred CCCEEEEeCccc-----cCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH
Confidence 578999999984 445444445555555543 2 45677777754
No 282
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=23.39 E-value=1.6e+02 Score=26.51 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++++.+|.
T Consensus 156 ~P~lllLDEPt~-----gLD~~~~~~l~~~l~~l~~-~g~till~sH~ 197 (306)
T PRK13537 156 DPDVLVLDEPTT-----GLDPQARHLMWERLRSLLA-RGKTILLTTHF 197 (306)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 578999999983 5565555555555555532 34577777773
No 283
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.16 E-value=5.5e+02 Score=22.99 Aligned_cols=138 Identities=13% Similarity=0.183 Sum_probs=74.0
Q ss_pred cchhhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHH--HHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcc
Q 024921 4 QYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVL--HQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCN 81 (260)
Q Consensus 4 ~~~~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl--~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~n 81 (260)
++..-|.+.|.-++-.+| |.++.+++-+. +|.++- -+.+...+... +--+++-.-......=..+++.||++
T Consensus 80 ~~~~~l~~~l~~~~rilp----gg~~~~s~ll~-~P~~l~~ig~~la~~~~~~-~iD~VvgvetkGIpLA~avA~~L~vp 153 (268)
T TIGR01743 80 EFVEELCQSLSEPERILP----GGYLYLTDILG-KPSILSKIGKILASVFAER-EIDAVMTVATKGIPLAYAVASVLNVP 153 (268)
T ss_pred HHHHHHHHHHHHCCCccc----CCeEEechhhc-CHHHHHHHHHHHHHHhcCC-CCCEEEEEccchHHHHHHHHHHHCCC
Confidence 344555556655444444 78889998655 444321 22333333322 12266666678888888999999999
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHH
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFL 161 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi 161 (260)
+.-.++.++..==+..+.-|.. +. +...+.++- -++.+ ..+.-++||||+- .+|.+..++.+.+
T Consensus 154 ~vivRK~~K~t~g~~vs~nY~s---gs--~~~ie~m~l-~k~~l------~~G~rVLIVDDv~----~TGgTi~a~i~Ll 217 (268)
T TIGR01743 154 LVIVRKDSKVTEGSTVSINYVS---GS--SNRIQTMSL-AKRSL------KTGSKVLIIDDFM----KAGGTINGMINLL 217 (268)
T ss_pred EEEEEECCCCCCCCcEEEEEEc---cc--CccceEEEE-ehhhC------CCcCEEEEEeeec----ccCHHHHHHHHHH
Confidence 9888776665211111111110 00 000111100 00111 1367899999963 4688877776666
Q ss_pred HH
Q 024921 162 HY 163 (260)
Q Consensus 162 ~~ 163 (260)
+.
T Consensus 218 ~e 219 (268)
T TIGR01743 218 DE 219 (268)
T ss_pred HH
Confidence 43
No 284
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.14 E-value=4.3e+02 Score=23.78 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred hccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHH
Q 024921 79 GCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVL 158 (260)
Q Consensus 79 G~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~ 158 (260)
+-.|.-+..+|++. |.+..+|.. ..++.+-..|+..=+.+ ..=|+|++++..+..-+.+-.| .
T Consensus 93 SeHL~~~~~~g~~y--DLlPlP~te--------ea~~~va~~I~~~Qd~L------erplllEN~s~Y~~~~~~~m~E-~ 155 (282)
T COG3220 93 SEHLSYCTDDGHLY--DLLPLPFTE--------EAVDHVAARIREVQDVL------ERPLLLENPSYYLHSPCSAMNE-V 155 (282)
T ss_pred hhheeeeccCCeee--ccccCcccH--------HHHHHHHHHHHHHHHHh------cCceeecCcccccccccccccH-H
Confidence 55666555566655 888877763 23444444444321111 1128899999887432333334 4
Q ss_pred HHHHHHHHhhcccCCeEEE-Eeec----cCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCC
Q 024921 159 DFLHYCHALTSEFDCSLIT-LNHE----DIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGT 228 (260)
Q Consensus 159 ~fi~~l~~~~~~~~~~lv~-l~h~----~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~ 228 (260)
+|++. ++...+|.+.. +.+. .... -+...++..+--..---|.+. |.+-|..|.|-|-..+.
T Consensus 156 ~FL~a---l~~~~~CglLLDvNNiyVna~NHG-~d~~~yL~~~p~~rV~eIHlA----Gh~~~~~G~LlIDTHg~ 222 (282)
T COG3220 156 EFLNA---LAREAGCGLLLDVNNIYVNAVNHG-FDPEEYLAALPVERVGEIHLA----GHDEEEEGELLIDTHGA 222 (282)
T ss_pred HHHHH---HHHhcCCCEEEeecceEEeccccC-CCHHHHHhcCCHHHheeeeec----cCCcCcCCceeeecCCC
Confidence 77754 45577786543 2221 1111 123356666655555555555 88888899888865554
No 285
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=23.02 E-value=2.2e+02 Score=23.43 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. +++......+.+.++..... +.++++..|.
T Consensus 116 ~p~llilDEp~~-----~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~ 157 (178)
T cd03239 116 PSPFYVLDEIDA-----ALDPTNRRRVSDMIKEMAKH-TSQFIVITLK 157 (178)
T ss_pred CCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEECC
Confidence 467899999983 45555555566656555332 4577777775
No 286
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=22.93 E-value=1.8e+02 Score=27.60 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=26.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|..- ++......+...++.++. .+.++++..|+
T Consensus 157 ~P~iLLLDEPtsg-----LD~~~~~~l~~lL~~l~~-~g~TIIivsHd 198 (402)
T PRK09536 157 ATPVLLLDEPTAS-----LDINHQVRTLELVRRLVD-DGKTAVAAIHD 198 (402)
T ss_pred CCCEEEEECCccc-----CCHHHHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 5789999999854 444433344444455543 34577777774
No 287
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.73 E-value=1.5e+02 Score=22.44 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=36.8
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG 152 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~ 152 (260)
++....||..... ++ .....-+.++..|-+.+.+..+-+..++.|.+.+.+.-.|+.|+
T Consensus 54 ~~~p~a~v~i~~~--g~-----~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~~~~~~w~~~G 112 (116)
T PTZ00397 54 SHDGCCFVRVTSI--GG-----ISRSNNSSIAAAITKILASHLKVKSERVYIEFKDCSAQNWAFNG 112 (116)
T ss_pred CCCceEEEEEEEe--cC-----CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECChhheeEcc
Confidence 3445666666542 11 11233456777777777654444457899999999988887654
No 288
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=22.71 E-value=1.8e+02 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=20.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKR 49 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~ 49 (260)
++|.++.|....|+.=|-|+..+.-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 36888888888888888877766654
No 289
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=22.65 E-value=1.9e+02 Score=24.64 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=32.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.+.. .+.++|+..|... .+.+.||-++.+.
T Consensus 155 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-----------~~~~~~d~v~~l~ 211 (241)
T PRK10895 155 NPKFILLDEPFA-----GVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-----------ETLAVCERAYIVS 211 (241)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-----------HHHHhcCEEEEEe
Confidence 578999999984 4444444444444444432 3456777777431 1344566666664
No 290
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=22.53 E-value=1.7e+02 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=25.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.+||+|.|..=+.. .+..++++.+ +.+..+.+.+++++.|+
T Consensus 179 ~P~llilDEPts~LD~--~~~~~i~~lL---~~l~~~~g~til~iTHd 221 (330)
T PRK09473 179 RPKLLIADEPTTALDV--TVQAQIMTLL---NELKREFNTAIIMITHD 221 (330)
T ss_pred CCCEEEEeCCCccCCH--HHHHHHHHHH---HHHHHHcCCEEEEEECC
Confidence 5689999999855432 1223344444 44433445678888884
No 291
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.52 E-value=1.9e+02 Score=24.79 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=26.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|+|.. |++......+.+.++.+. .+.++|+..|.-
T Consensus 167 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~ 208 (251)
T PRK14244 167 KPTMLLMDEPCS-----ALDPVATNVIENLIQELK--KNFTIIVVTHSM 208 (251)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence 467999999973 444444445555555552 246777777753
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=22.47 E-value=1.5e+02 Score=28.84 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|..= +++.....+...++.++.+.+.++|+..|+
T Consensus 174 ~p~llllDEPt~~-----LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 174 RPELLIADEPTTA-----LDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred CCCEEEEcCCCCc-----cCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 5779999999854 444455555555555544445678888774
No 293
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.45 E-value=1.9e+02 Score=25.76 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=36.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEe
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKA 206 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l 206 (260)
.+.++|+|.+..-+... + ..++++.+..++ ++.+-++++++|+- ..+.|+||-++-.
T Consensus 159 ~PklLIlDEptSaLD~s-i-Qa~IlnlL~~l~---~~~~lt~l~IsHdl-----------~~v~~~cdRi~Vm 215 (252)
T COG1124 159 EPKLLILDEPTSALDVS-V-QAQILNLLLELK---KERGLTYLFISHDL-----------ALVEHMCDRIAVM 215 (252)
T ss_pred CCCEEEecCchhhhcHH-H-HHHHHHHHHHHH---HhcCceEEEEeCcH-----------HHHHHHhhheeee
Confidence 46799999998776531 2 346677665554 35656788888754 2356677765543
No 294
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=22.33 E-value=1.7e+02 Score=26.91 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=27.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++...-..+...++.+..+.+.++++..|+
T Consensus 149 ~p~lllLDEPts-----~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 149 SPRLLLMDEPLA-----ALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred CCCEEEEcCCCc-----CCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 467999999984 4454444455555555544445678888774
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.21 E-value=3.3e+02 Score=27.16 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=48.5
Q ss_pred chhhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEecc----CchhHHHHHHHHhc
Q 024921 5 YLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN----PFSHYDRILRKLGC 80 (260)
Q Consensus 5 ~~~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~----~~~hy~~~~~KlG~ 80 (260)
+..+|...+.+... .+...+..+.+..-.|+.=+.++..+...+...+.+.+|.+++.-. ..+.++..++.+|+
T Consensus 331 l~~~L~~~l~v~~~--~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv 408 (559)
T PRK12727 331 MLGLLSKRLPVAPV--DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGI 408 (559)
T ss_pred HHHHHHHhcCcCcc--ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCc
Confidence 34456665544322 2234688888888789999999999988766543334598888521 12334444556676
Q ss_pred cccc
Q 024921 81 NLVT 84 (260)
Q Consensus 81 nL~~ 84 (260)
.+..
T Consensus 409 ~v~~ 412 (559)
T PRK12727 409 AVHE 412 (559)
T ss_pred eeEe
Confidence 5543
No 296
>PRK13409 putative ATPase RIL; Provisional
Probab=22.16 E-value=1.7e+02 Score=29.17 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=28.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+-++|+|.|+.- ++......+...++.++.+.+.++++..|+-
T Consensus 471 ~p~llLLDEPt~~-----LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 471 DADLYLLDEPSAH-----LDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred CCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5679999999854 4444444555555555555566788888754
No 297
>PF13245 AAA_19: Part of AAA domain
Probab=22.16 E-value=2e+02 Score=20.18 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=37.6
Q ss_pred CcEEEEeecCCCCccHHHHHHHHHhcCC--CCCCeEEEEEeccCchhHHHHHHHH
Q 024921 26 GRVVLIEDCVETSGSFVLHQLVKRSLSP--TSSNVIIFVAFANPFSHYDRILRKL 78 (260)
Q Consensus 26 ~~l~litd~~~t~~sfLl~~~l~~~L~~--~~~~~Vvlvs~~~~~~hy~~~~~Kl 78 (260)
+.+++|+.--|+.=+.++.+.+..++.. ..+.+|.++++.+...- ++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~--~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD--ELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH--HHHHHH
Confidence 6788889989999998888888888742 22456999998876554 444555
No 298
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=22.09 E-value=1.8e+02 Score=26.67 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=26.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.+||+|.|..=+.. .+..++++.+..++ .+.+.++|++.|+
T Consensus 179 ~P~llilDEPts~LD~--~~~~~i~~lL~~l~---~~~~~til~iTHd 221 (331)
T PRK15079 179 EPKLIICDEPVSALDV--SIQAQVVNLLQQLQ---REMGLSLIFIAHD 221 (331)
T ss_pred CCCEEEEeCCCccCCH--HHHHHHHHHHHHHH---HHcCCEEEEEeCC
Confidence 5789999999855432 12344555555443 3445678888874
No 299
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=22.01 E-value=2.3e+02 Score=23.08 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCC
Q 024921 133 KDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLST 211 (260)
Q Consensus 133 ~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~T 211 (260)
+...+||||+++.|-. ...-.++.++.. ..+.+++++...+. ..+...+..+|. ++.+.|++.
T Consensus 95 ~~~kviiide~~~l~~------~~~~~Ll~~le~---~~~~~~~il~~~~~------~~l~~~i~sr~~-~~~~~~~~~ 157 (188)
T TIGR00678 95 SGRRVVIIEDAERMNE------AAANALLKTLEE---PPPNTLFILITPSP------EKLLPTIRSRCQ-VLPFPPLSE 157 (188)
T ss_pred CCeEEEEEechhhhCH------HHHHHHHHHhcC---CCCCeEEEEEECCh------HhChHHHHhhcE-EeeCCCCCH
Confidence 3577999999987742 122233333321 11223444443222 245666777775 788888863
No 300
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=21.92 E-value=2e+02 Score=25.06 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=27.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|.
T Consensus 181 ~p~lllLDEPt~-----~LD~~~~~~l~~~L~~l~~--~~tiiivtH~ 221 (267)
T PRK14235 181 SPEVILMDEPCS-----ALDPIATAKVEELIDELRQ--NYTIVIVTHS 221 (267)
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence 568999999983 4555555566666666533 3567777774
No 301
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.88 E-value=4.8e+02 Score=23.72 Aligned_cols=106 Identities=12% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCcEEEEEeChhHHHHHcCCC--------hHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCC--------ChhHHHHHc
Q 024921 133 KDYVTIMIDDISLVEVAANGG--------SDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSM--------ERPTLILQM 196 (260)
Q Consensus 133 ~~~~~iIiDdl~~Ll~~~g~~--------~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~--------e~~~l~~~L 196 (260)
+...+||+|.+-.++- -..+ ..-+...+..++.++++.+.+|++.....+.... --...-..+
T Consensus 210 g~~rlvIVDsIma~FR-vDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~ 288 (335)
T KOG1434|consen 210 GKYRLVIVDSIMALFR-VDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSW 288 (335)
T ss_pred CcEEEEEEeceehhee-ecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcccccccccccCccccchh
Confidence 4678999999998852 1111 1123455566777777777777776653322110 001233445
Q ss_pred chhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 197 EYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 197 ~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
.|.|...|-++ -|| |..|+-+-- .+....|+|..|-++.+|++
T Consensus 289 aHAsttRlilr---kgr-----g~eR~Akl~-----dSP~mpe~e~~y~It~~Gi~ 331 (335)
T KOG1434|consen 289 AHASTTRLILR---KGR-----GDERVAKLY-----DSPSMPEAEASYVITPGGIR 331 (335)
T ss_pred hhhhheeEEEE---cCC-----cceeeeecc-----cCCCCCcceEEEEEcCCccc
Confidence 66665555443 122 223332211 12235789999999887753
No 302
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=21.74 E-value=2e+02 Score=23.78 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=20.6
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKR 49 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~ 49 (260)
++|.++.|....|+.=|-|+..+.-.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999998888888887766554
No 303
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=21.69 E-value=1e+02 Score=27.16 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=38.6
Q ss_pred EEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec-cCCCCCChhHHHHHcchhcceEEE
Q 024921 136 VTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE-DIYSSMERPTLILQMEYLADILIK 205 (260)
Q Consensus 136 ~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~-~~~~~~e~~~l~~~L~h~a~~~i~ 205 (260)
-++++|.+++=+.- +.-.+++.|+ +.-|++.+|+||.-.|. |.. ..|.+.+.|.++=-|.
T Consensus 167 kVLLLDEVTVDLDV--lARadLLeFl---keEce~RgatIVYATHIFDGL-----e~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDV--LARADLLEFL---KEECEQRGATIVYATHIFDGL-----ETWPTHLVYIKSGKLV 227 (291)
T ss_pred eEEEeeeeEeehHH--HHHHHHHHHH---HHHHhhcCcEEEEEeeeccch-----hhcchhEEEecCCeee
Confidence 57888877654432 2234666666 55577888999988884 332 2377888887765544
No 304
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=21.66 E-value=2.3e+02 Score=26.28 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCc
Q 024921 133 KDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTG 212 (260)
Q Consensus 133 ~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG 212 (260)
++..++|||+.+.|-. ...+++++.+..- ..+ +++++..... ..+...+..+| ..+.+.|++.-
T Consensus 140 g~~rVviIDeAd~l~~---~aanaLLk~LEEp-----p~~-~~fiLit~~~------~~llptIrSRc-~~i~l~pl~~~ 203 (351)
T PRK09112 140 GNWRIVIIDPADDMNR---NAANAILKTLEEP-----PAR-ALFILISHSS------GRLLPTIRSRC-QPISLKPLDDD 203 (351)
T ss_pred CCceEEEEEchhhcCH---HHHHHHHHHHhcC-----CCC-ceEEEEECCh------hhccHHHHhhc-cEEEecCCCHH
Confidence 4678999999998742 2245555555321 122 3333433221 12455667788 48888888865
Q ss_pred Cc
Q 024921 213 LA 214 (260)
Q Consensus 213 ~a 214 (260)
-.
T Consensus 204 ~~ 205 (351)
T PRK09112 204 EL 205 (351)
T ss_pred HH
Confidence 43
No 305
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.60 E-value=2.1e+02 Score=24.59 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+. ...++|+.+|+-
T Consensus 165 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~--~~~tilivsh~~ 206 (251)
T PRK14249 165 EPEVILMDEPCS-----ALDPVSTMRIEELMQELK--QNYTIAIVTHNM 206 (251)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 578999999983 455555555555555552 245777777743
No 306
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.48 E-value=2.1e+02 Score=24.59 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=33.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+.+.++.+. + ++++|+..|+-. + +...||-++.+.
T Consensus 164 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~--------~---~~~~~d~v~~l~ 219 (250)
T PRK14245 164 SPSVLLMDEPAS-----ALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ--------Q---AARVSDKTAFFY 219 (250)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH--------H---HHhhCCEEEEEE
Confidence 567999999973 455444455555566553 2 467777776432 1 334566666654
No 307
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.42 E-value=2.1e+02 Score=25.03 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=34.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. +++......+...++.+.. .++++++..|+-. + +...||.++-++
T Consensus 157 ~p~illlDEPts-----~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~--------~---~~~~ad~i~~l~ 213 (255)
T cd03236 157 DADFYFFDEPSS-----YLDIKQRLNAARLIRELAE-DDNYVLVVEHDLA--------V---LDYLSDYIHCLY 213 (255)
T ss_pred CCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH--------H---HHHhCCEEEEEC
Confidence 467999999983 4555554555555555433 2466777776531 2 334467666666
No 308
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.42 E-value=1.6e+02 Score=29.49 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=29.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.++++++|+|+. |+++.--..-++.|+.++.+ +++||+..|-
T Consensus 188 ~P~iLflDEPTS-----GLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQ 229 (613)
T KOG0061|consen 188 DPSILFLDEPTS-----GLDSFSALQVVQLLKRLARS-GRTVICTIHQ 229 (613)
T ss_pred CCCEEEecCCCC-----CcchhhHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 578999999983 44444445556666777666 7788887773
No 309
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=21.40 E-value=3.9e+02 Score=25.79 Aligned_cols=147 Identities=12% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCcEEEEeecCCCCccHHH-HHHHHHhcCCCCCCeEEEEEe------ccCchhHHHHHHHHhcccc-ccccCCceEEeec
Q 024921 25 SGRVVLIEDCVETSGSFVL-HQLVKRSLSPTSSNVIIFVAF------ANPFSHYDRILRKLGCNLV-TQRDNKRFIFFDM 96 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl-~~~l~~~L~~~~~~~Vvlvs~------~~~~~hy~~~~~KlG~nL~-~~~~~g~~~fvD~ 96 (260)
...|++|+.-.|+.-.=|+ .|.|+ +... |+++-+ ..+..+-++.++-.||-.. ... +.--.|||.
T Consensus 16 ~~TFIvV~GPrGSGK~elV~d~~L~----~r~~--vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~-nSiss~IDL 88 (431)
T PF10443_consen 16 PNTFIVVQGPRGSGKRELVMDHVLK----DRKN--VLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWM-NSISSFIDL 88 (431)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHh----CCCC--EEEEEChHhhhccChHHHHHHHHHhcCCCcchHHH-HHHHHHHHH
Confidence 4689999998888777665 55554 3333 776654 4577788888888898421 100 001135665
Q ss_pred ccccCCCCCCC--CCCCcchHHHHHHHHHHhcCC--------------------CCCCCCcEEEEEeChhHHHHHcCCCh
Q 024921 97 LMLRCPDVDEG--KSSEGGLVLLYEKILKTICGL--------------------PGDKKDYVTIMIDDISLVEVAANGGS 154 (260)
Q Consensus 97 l~~~~~~~~~~--~~~~~~l~~L~~~I~~~l~~~--------------------~~~~~~~~~iIiDdl~~Ll~~~g~~~ 154 (260)
..--..|...| .+.+..++.+++....+|+.. ..++...++||||+...-- ...
T Consensus 89 a~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~----~~~ 164 (431)
T PF10443_consen 89 AVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKA----EEN 164 (431)
T ss_pred HHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccC----ccc
Confidence 44222222222 233455677777766666531 0122347899999985431 121
Q ss_pred HHHHH-HHHHHHHhhcccCCeEEEEeecc
Q 024921 155 DYVLD-FLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 155 ~~v~~-fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.-+.+ +......++...-+.||++..+-
T Consensus 165 ~~iy~~laeWAa~Lv~~nIAHVIFlT~dv 193 (431)
T PF10443_consen 165 DFIYDKLAEWAASLVQNNIAHVIFLTDDV 193 (431)
T ss_pred chHHHHHHHHHHHHHhcCccEEEEECCCC
Confidence 22222 22333344444444577776544
No 310
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=21.37 E-value=1.9e+02 Score=26.66 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++...-..+...++.+..+.+.++++..|+
T Consensus 146 ~p~llLLDEPts-----~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 146 APELLLMDEPLA-----SLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 467999999973 4454444455555555544445678888774
No 311
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.15 E-value=2.1e+02 Score=24.97 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
++-++|+|.|..-+.- ....+++.++..++ .+.+.++|+..|+
T Consensus 156 ~P~iliLDEPta~LD~--~~~~~l~~~l~~L~---~~~~~tii~~tHd 198 (235)
T COG1122 156 GPEILLLDEPTAGLDP--KGRRELLELLKKLK---EEGGKTIIIVTHD 198 (235)
T ss_pred CCCEEEEcCCCCCCCH--HHHHHHHHHHHHHH---hcCCCeEEEEeCc
Confidence 4679999999865532 22445566665553 3444578888775
No 312
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=21.12 E-value=2.3e+02 Score=24.31 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=26.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+.. +.++|+..|.-
T Consensus 164 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~ 205 (250)
T PRK14240 164 EPEVLLMDEPTS-----ALDPISTLKIEELIQELKK--DYTIVIVTHNM 205 (250)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH
Confidence 567999999984 4444444455555555532 45777777753
No 313
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=21.10 E-value=1.9e+02 Score=24.15 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=26.2
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|.
T Consensus 151 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 191 (220)
T cd03263 151 GPSVLLLDEPTS-----GLDPASRRAIWDLILEVRK--GRSIILTTHS 191 (220)
T ss_pred CCCEEEECCCCC-----CCCHHHHHHHHHHHHHHhc--CCEEEEEcCC
Confidence 578999999984 4454455555555665533 3567777664
No 314
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.89 E-value=2.1e+02 Score=24.56 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=26.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|+-
T Consensus 167 ~p~llllDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~ 208 (253)
T PRK14267 167 KPKILLMDEPTA-----NIDPVGTAKIEELLFELKK--EYTIVLVTHSP 208 (253)
T ss_pred CCCEEEEcCCCc-----cCCHHHHHHHHHHHHHHhh--CCEEEEEECCH
Confidence 568999999973 4554455555555555532 35777777753
No 315
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.69 E-value=2.1e+02 Score=25.09 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=35.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
.+.++|+|.|.. |++......+...++.++. ++++++..|+-. + +...||-++-+..
T Consensus 179 ~p~lllLDEPt~-----~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~--------~---~~~~~d~i~~l~~ 235 (274)
T PRK14265 179 KPDVLLMDEPCS-----ALDPISTRQVEELCLELKE--QYTIIMVTHNMQ--------Q---ASRVADWTAFFNT 235 (274)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH--------H---HHHhCCEEEEEec
Confidence 577999999984 4555555566666666532 356777766542 2 3445677777753
No 316
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=20.68 E-value=1.9e+02 Score=24.13 Aligned_cols=44 Identities=2% Similarity=-0.219 Sum_probs=26.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcc-cC-CeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSE-FD-CSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~-~~-~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |.+......+.+.++..+.. .+ +++++..|.-
T Consensus 131 ~p~illlDEP~~-----glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~ 176 (198)
T cd03276 131 ESPFRCLDEFDV-----FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI 176 (198)
T ss_pred CCCEEEecCccc-----ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 567999999974 44555555666666665443 23 3455555543
No 317
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=20.52 E-value=2.3e+02 Score=24.27 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=33.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|+-. + +...||.++.++
T Consensus 167 ~p~llllDEPt~-----~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~--------~---~~~~~d~v~~l~ 222 (253)
T PRK14242 167 EPEVLLMDEPAS-----ALDPIATQKIEELIHELKA--RYTIIIVTHNMQ--------Q---AARVSDVTAFFY 222 (253)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHhc--CCeEEEEEecHH--------H---HHHhCCEEEEEE
Confidence 467999999984 4454444555555555532 356777777531 1 234566666664
No 318
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.32 E-value=2.2e+02 Score=24.68 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=25.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|.
T Consensus 179 ~p~llllDEPt~-----gLD~~~~~~l~~~l~~l~~--~~tiiivth~ 219 (265)
T PRK14252 179 DPEILLFDEPTS-----ALDPIATASIEELISDLKN--KVTILIVTHN 219 (265)
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHh--CCEEEEEecC
Confidence 567999999984 4444444455555555432 3567777764
No 319
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.27 E-value=2.2e+02 Score=24.00 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=26.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+. + +.++++..|+-
T Consensus 156 ~p~lllLDEP~~-----~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~ 197 (234)
T cd03251 156 DPPILILDEATS-----ALDTESERLVQAALERLM-K-NRTTFVIAHRL 197 (234)
T ss_pred CCCEEEEeCccc-----cCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH
Confidence 467999999963 555555555555555553 2 34666666643
No 320
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.22 E-value=2.2e+02 Score=24.35 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=26.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+.. +.++|+..|.-
T Consensus 164 ~p~lllLDEP~~-----~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~ 205 (250)
T PRK14247 164 QPEVLLADEPTA-----NLDPENTAKIESLFLELKK--DMTIVLVTHFP 205 (250)
T ss_pred CCCEEEEcCCCc-----cCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH
Confidence 578999999973 4555555555555665532 45677777753
No 321
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.16 E-value=1.5e+02 Score=27.36 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=31.5
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+-+||-|.|+.-|..+ ...++++.+..++. +.+.+++.+.|+
T Consensus 171 ~P~LlIADEPTTALDvt--~QaqIl~Ll~~l~~---e~~~aiilITHD 213 (316)
T COG0444 171 NPKLLIADEPTTALDVT--VQAQILDLLKELQR---EKGTALILITHD 213 (316)
T ss_pred CCCEEEeCCCcchhhHH--HHHHHHHHHHHHHH---hcCCEEEEEeCC
Confidence 47899999999877542 24567777766654 677789999884
No 322
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.15 E-value=2.3e+02 Score=24.37 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=27.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+.+.++.+.. +.++|+..|.-
T Consensus 167 ~p~lllLDEP~~-----gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~ 208 (253)
T PRK14261 167 NPEVILMDEPCS-----ALDPIATAKIEDLIEDLKK--EYTVIIVTHNM 208 (253)
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHhh--CceEEEEEcCH
Confidence 578999999973 4555555555555555533 35777777753
No 323
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.06 E-value=2.3e+02 Score=24.40 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=26.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |++......+...++.+. + +.++|+..|.-
T Consensus 168 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~ 209 (254)
T PRK14273 168 EPNVILMDEPTS-----ALDPISTGKIEELIINLK-E-SYTIIIVTHNM 209 (254)
T ss_pred CCCEEEEeCCCc-----ccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH
Confidence 467999999984 445444445555555553 2 35677777643
No 324
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=20.03 E-value=1.6e+02 Score=28.51 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=33.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|..= ++......+...++.++.+ +.++|+.+|+-. + +...||-++-+.
T Consensus 421 ~p~lLlLDEPt~g-----LD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~--------~---i~~~~d~i~~l~ 477 (510)
T PRK15439 421 SPQLLIVDEPTRG-----VDVSARNDIYQLIRSIAAQ-NVAVLFISSDLE--------E---IEQMADRVLVMH 477 (510)
T ss_pred CCCEEEECCCCcC-----cChhHHHHHHHHHHHHHhC-CCEEEEECCCHH--------H---HHHhCCEEEEEE
Confidence 4679999999844 4433444444444554433 567777777531 2 334466666664
Done!