Query 024921
Match_columns 260
No_of_seqs 114 out of 226
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_C Elongator complex prote 100.0 3.2E-48 1.1E-52 339.7 21.0 220 24-256 34-280 (280)
2 2zts_A Putative uncharacterize 99.3 1.8E-10 6E-15 98.3 15.8 226 8-258 18-249 (251)
3 3bs4_A Uncharacterized protein 99.1 5.8E-09 2E-13 91.5 16.9 219 8-249 9-248 (260)
4 2dr3_A UPF0273 protein PH0284; 99.0 1.4E-08 4.9E-13 86.2 17.6 224 7-257 10-237 (247)
5 2w0m_A SSO2452; RECA, SSPF, un 99.0 3.4E-08 1.2E-12 82.8 18.0 222 7-256 10-232 (235)
6 4a8j_B Elongator complex prote 98.8 1E-07 3.5E-12 82.4 13.2 162 6-214 9-179 (270)
7 2z43_A DNA repair and recombin 98.7 7.9E-07 2.7E-11 79.8 17.1 210 7-253 94-321 (324)
8 2i1q_A DNA repair and recombin 98.6 9.2E-07 3.2E-11 79.0 15.2 209 7-252 85-321 (322)
9 1v5w_A DMC1, meiotic recombina 98.5 8.6E-06 3E-10 73.7 18.4 211 8-254 110-341 (343)
10 2ehv_A Hypothetical protein PH 98.4 2.1E-05 7.1E-10 66.6 18.1 217 24-258 28-249 (251)
11 1n0w_A DNA repair protein RAD5 98.4 7.3E-06 2.5E-10 69.2 14.7 211 7-255 11-242 (243)
12 2cvh_A DNA repair and recombin 98.4 1.4E-05 4.8E-10 66.4 15.2 205 7-253 7-218 (220)
13 1xp8_A RECA protein, recombina 98.2 3.1E-05 1.1E-09 70.9 15.3 204 7-254 60-287 (366)
14 3lda_A DNA repair protein RAD5 98.1 0.00023 7.9E-09 65.8 17.8 209 7-253 165-394 (400)
15 1pzn_A RAD51, DNA repair and r 98.0 0.00029 9.9E-09 63.9 17.5 213 7-252 118-348 (349)
16 3hr8_A Protein RECA; alpha and 98.0 0.00012 4.3E-09 66.7 14.5 181 7-224 47-246 (356)
17 2zr9_A Protein RECA, recombina 98.0 7.4E-05 2.5E-09 67.9 12.4 167 8-209 48-230 (349)
18 1u94_A RECA protein, recombina 97.9 5E-05 1.7E-09 69.2 9.4 168 8-210 50-233 (356)
19 4a8j_A Elongator complex prote 97.8 9.6E-05 3.3E-09 67.3 9.4 131 112-250 198-345 (361)
20 3cmu_A Protein RECA, recombina 97.7 0.00047 1.6E-08 74.8 14.4 206 7-254 20-246 (2050)
21 3bh0_A DNAB-like replicative h 97.6 0.00067 2.3E-08 60.4 13.0 180 24-209 66-266 (315)
22 4a74_A DNA repair and recombin 97.6 0.0031 1.1E-07 52.2 16.3 206 7-252 12-230 (231)
23 1tf7_A KAIC; homohexamer, hexa 97.5 0.0078 2.7E-07 57.2 19.7 212 9-256 270-482 (525)
24 3cmu_A Protein RECA, recombina 97.5 0.00046 1.6E-08 74.9 11.4 169 7-210 369-553 (2050)
25 3cmw_A Protein RECA, recombina 97.4 0.00029 9.8E-09 75.5 8.5 169 7-210 369-553 (1706)
26 2r6a_A DNAB helicase, replicat 97.3 0.0029 1E-07 59.0 13.3 179 24-210 201-400 (454)
27 3io5_A Recombination and repai 97.3 0.0025 8.6E-08 57.3 12.1 181 7-222 12-215 (333)
28 3cmw_A Protein RECA, recombina 97.3 0.00052 1.8E-08 73.6 8.5 166 8-208 719-900 (1706)
29 1q57_A DNA primase/helicase; d 97.2 0.0032 1.1E-07 59.4 12.5 184 24-227 240-459 (503)
30 2q6t_A DNAB replication FORK h 97.1 0.0039 1.3E-07 58.0 11.7 179 24-210 198-399 (444)
31 1nlf_A Regulatory protein REPA 97.0 0.0069 2.4E-07 52.4 11.6 144 23-182 27-181 (279)
32 3bgw_A DNAB-like replicative h 96.8 0.0075 2.6E-07 56.3 10.6 180 24-210 195-396 (444)
33 4a1f_A DNAB helicase, replicat 96.3 0.012 4.1E-07 53.1 8.6 174 24-208 44-240 (338)
34 1tf7_A KAIC; homohexamer, hexa 96.1 0.16 5.5E-06 48.0 15.5 206 24-255 37-248 (525)
35 1cr0_A DNA primase/helicase; R 93.9 2.6 8.9E-05 36.0 15.7 181 24-227 33-252 (296)
36 2b8t_A Thymidine kinase; deoxy 80.6 4.8 0.00016 33.7 7.3 156 25-225 11-168 (223)
37 1fnn_A CDC6P, cell division co 75.7 32 0.0011 29.7 11.7 89 28-146 46-137 (389)
38 2vhj_A Ntpase P4, P4; non- hyd 75.4 5.4 0.00018 35.6 6.3 108 24-180 121-234 (331)
39 2qby_A CDC6 homolog 1, cell di 72.5 35 0.0012 29.3 11.1 95 25-148 44-142 (386)
40 1g5t_A COB(I)alamin adenosyltr 70.9 41 0.0014 27.4 11.2 157 24-215 27-186 (196)
41 2ekd_A Hypothetical protein PH 64.1 60 0.002 26.7 11.6 165 25-207 14-182 (207)
42 2v1u_A Cell division control p 63.2 59 0.002 27.8 10.6 94 25-147 43-143 (387)
43 1f2t_B RAD50 ABC-ATPase; DNA d 55.5 35 0.0012 26.2 6.8 57 134-208 81-137 (148)
44 3tif_A Uncharacterized ABC tra 53.0 18 0.0006 30.0 5.0 57 134-207 163-219 (235)
45 1g6h_A High-affinity branched- 49.5 49 0.0017 27.6 7.3 57 134-207 171-227 (257)
46 4g1u_C Hemin import ATP-bindin 49.5 23 0.00078 30.1 5.2 58 134-207 165-222 (266)
47 3gfo_A Cobalt import ATP-bindi 47.1 55 0.0019 27.8 7.4 44 134-182 161-204 (275)
48 2pcj_A ABC transporter, lipopr 45.4 32 0.0011 28.2 5.4 42 134-181 158-199 (224)
49 3qkt_A DNA double-strand break 43.5 50 0.0017 28.7 6.7 62 134-214 272-333 (339)
50 2yz2_A Putative ABC transporte 43.2 69 0.0024 26.9 7.3 43 134-182 156-198 (266)
51 1w5s_A Origin recognition comp 43.0 1.6E+02 0.0056 25.3 11.7 94 25-147 49-151 (412)
52 1b0u_A Histidine permease; ABC 40.7 38 0.0013 28.5 5.2 57 134-207 171-227 (262)
53 3kta_B Chromosome segregation 39.5 57 0.002 25.7 5.8 61 135-215 87-147 (173)
54 2nq2_C Hypothetical ABC transp 39.5 42 0.0014 28.1 5.3 43 134-181 146-188 (253)
55 2olj_A Amino acid ABC transpor 39.5 42 0.0014 28.3 5.3 57 134-207 177-233 (263)
56 2ixe_A Antigen peptide transpo 35.9 50 0.0017 27.9 5.2 57 134-207 174-230 (271)
57 1ji0_A ABC transporter; ATP bi 35.9 58 0.002 26.9 5.6 57 134-207 157-213 (240)
58 2d2e_A SUFC protein; ABC-ATPas 35.5 55 0.0019 27.2 5.4 42 134-181 161-202 (250)
59 2onk_A Molybdate/tungstate ABC 34.0 35 0.0012 28.4 3.9 58 134-207 144-201 (240)
60 1vpl_A ABC transporter, ATP-bi 34.0 66 0.0023 26.9 5.7 57 134-207 164-220 (256)
61 3en0_A Cyanophycinase; serine 33.7 69 0.0024 27.7 5.8 60 19-80 20-85 (291)
62 4aby_A DNA repair protein RECN 32.8 54 0.0018 29.0 5.2 53 136-207 317-369 (415)
63 2qi9_C Vitamin B12 import ATP- 32.3 65 0.0022 26.9 5.3 55 136-207 153-207 (249)
64 2ihy_A ABC transporter, ATP-bi 31.3 59 0.002 27.6 5.0 43 134-182 179-223 (279)
65 2zu0_C Probable ATP-dependent 31.1 54 0.0019 27.6 4.7 42 134-181 182-223 (267)
66 3tui_C Methionine import ATP-b 30.6 73 0.0025 28.5 5.6 43 134-181 181-223 (366)
67 3ec2_A DNA replication protein 30.2 1.2E+02 0.0041 23.0 6.3 39 25-65 37-76 (180)
68 3qf7_A RAD50; ABC-ATPase, ATPa 29.7 74 0.0025 28.0 5.5 43 134-182 303-345 (365)
69 3ozx_A RNAse L inhibitor; ATP 26.4 80 0.0027 29.6 5.3 43 134-181 403-445 (538)
70 3co5_A Putative two-component 25.9 1.7E+02 0.0059 21.4 6.3 67 135-210 76-143 (143)
71 2chg_A Replication factor C sm 24.9 1.8E+02 0.0063 22.0 6.6 15 133-147 101-115 (226)
72 1sgw_A Putative ABC transporte 24.7 63 0.0022 26.3 3.8 43 134-182 151-193 (214)
73 3pih_A Uvrabc system protein A 24.0 1.6E+02 0.0056 29.7 7.3 71 134-227 826-896 (916)
74 1yqt_A RNAse L inhibitor; ATP- 22.9 1E+02 0.0035 28.8 5.3 42 134-181 176-217 (538)
75 1yqt_A RNAse L inhibitor; ATP- 21.6 1E+02 0.0035 28.9 5.0 43 134-181 419-461 (538)
76 3ux8_A Excinuclease ABC, A sub 20.8 1.4E+02 0.0049 28.4 6.0 52 120-181 212-263 (670)
77 1sxj_E Activator 1 40 kDa subu 20.5 67 0.0023 27.4 3.3 26 29-54 39-64 (354)
78 2ff7_A Alpha-hemolysin translo 20.5 1.3E+02 0.0043 24.9 4.9 55 134-207 163-217 (247)
79 2ghi_A Transport protein; mult 20.1 1.3E+02 0.0045 25.0 5.0 25 24-48 44-68 (260)
80 1w1w_A Structural maintenance 20.1 1.5E+02 0.0052 26.4 5.7 64 134-215 355-419 (430)
81 3d31_A Sulfate/molybdate ABC t 20.0 1.4E+02 0.0048 26.3 5.3 43 134-181 145-187 (348)
No 1
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=100.00 E-value=3.2e-48 Score=339.71 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=178.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCC---------------CCeEEEEEeccCchhHHHHHHHHhccccccccC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTS---------------SNVIIFVAFANPFSHYDRILRKLGCNLVTQRDN 88 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~---------------~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~ 88 (260)
..+.+++||++++|+++||++++++++|.|.+ +++|+++||+|+++||.+.++|+|+|++
T Consensus 34 ~~~~L~liT~~~gTsp~WLin~lves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgidl~----- 108 (280)
T 4a8j_C 34 NSHNLFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSN----- 108 (280)
T ss_dssp SCCEEEEEEECTTSCCHHHHHHHHHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTCCGG-----
T ss_pred CCceEEEEccccCCChHHHHHHHHHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCCChh-----
Confidence 46899999999999999999999999996652 2579999999999999999999999994
Q ss_pred CceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHH-HHHHHHHHH
Q 024921 89 KRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYV-LDFLHYCHA 166 (260)
Q Consensus 89 g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v-~~fi~~l~~ 166 (260)
+|+|||+++++|.+...++|..+.++++.+.+..+|... ..+++||||+|++|+++++ +++.++ .+||..|++
T Consensus 109 -~f~fvD~~tdl~~~~~~~kp~~~~l~~v~~~f~~~i~~~----~~~~vlIldqpdlLLa~t~~it~~~L~~~~I~~L~k 183 (280)
T 4a8j_C 109 -NYNVLDFLSDFIVNNIHNKPRDKILSDVLAKFSAAIQNN----PTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLR 183 (280)
T ss_dssp -GEEEEESSTTHHHHHTTTCCHHHHHHHHHHHHHHHHHTS----TTSEEEEEECGGGHHHHSTTCCHHHHHHHTHHHHHH
T ss_pred -heeEEEecchhhhhcccCCcchhhhHHHHHHHhhhhhcc----CCCeEEEEcChHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 789999999998653123333444455555555555543 2689999999999998874 999999 999999987
Q ss_pred hhcccCCeEEEEeeccCC--------CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCC--CCCCC
Q 024921 167 LTSEFDCSLITLNHEDIY--------SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHR--LGRSG 236 (260)
Q Consensus 167 ~~~~~~~~lv~l~h~~~~--------~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~--~~~~~ 236 (260)
.|.. .||+++++++- .+.|+++|+.+|.|+|+++|++|||+||+||||||+|||+||+.+.+ ....+
T Consensus 184 ~~~~---lvvt~saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL~TG~AkDVTGvLrItrGg~~~~~~~~~~~ 260 (280)
T 4a8j_C 184 QCKV---LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCRGGAPIATSNTSLH 260 (280)
T ss_dssp TCSE---EEEEEECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECCCC--CCSCCEEEEEEECSSCCCCSCTTCC
T ss_pred hcce---EEEEeccCccccccCCCCchHHHHHHHHHHHHHHhheEEeecccCCcccccceEEEEEecCCccccccccccc
Confidence 6553 36666665532 13466899999999999999999999999999999999999998764 23567
Q ss_pred CceeeEeEEEecCcEEEeeC
Q 024921 237 NKIHNFHYKVKENTVEYFYP 256 (260)
Q Consensus 237 ~~~~e~lY~v~D~~Vk~F~r 256 (260)
++|+||+|++++.|||+|+|
T Consensus 261 v~E~EyLY~v~~dgVKvF~R 280 (280)
T 4a8j_C 261 VVENEYLYLNEKESTKLFYR 280 (280)
T ss_dssp BCCEEEEEEEETTEEEEECC
T ss_pred ccceeEEEEEcCCcEEEecC
Confidence 89999999998666999998
No 2
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.25 E-value=1.8e-10 Score=98.29 Aligned_cols=226 Identities=11% Similarity=0.139 Sum_probs=151.7
Q ss_pred hHHhhhC--CCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHHHHHHHHhccccc
Q 024921 8 LLDRALG--LDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYDRILRKLGCNLVT 84 (260)
Q Consensus 8 ~l~~~l~--~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~ 84 (260)
-||+.|+ + |+|++++|....++.-+.|..+++.+.. +++.+ |+++++..+......-+...|.++..
T Consensus 18 ~LD~~l~GGl--------~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~--v~~~s~E~~~~~~~~~~~~~~~~~~~ 87 (251)
T 2zts_A 18 GFDELIEGGF--------PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP--GVFVTLEERARDLRREMASFGWDFEK 87 (251)
T ss_dssp TTGGGTTTSE--------ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC--EEEEESSSCHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhcCCC--------CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCC--ceeecccCCHHHHHHHHHHcCCChHH
Confidence 4677773 4 5799999999999999999999887654 44445 99999999999999999999999999
Q ss_pred cccCCceEEeecccccCCCCCC---CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHH
Q 024921 85 QRDNKRFIFFDMLMLRCPDVDE---GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFL 161 (260)
Q Consensus 85 ~~~~g~~~fvD~l~~~~~~~~~---~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi 161 (260)
+..++++.++|........... ..........+.+.+...+... ....+|||++..+.... ....++..++
T Consensus 88 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vviD~~~~l~~~~-~~~~~~~~~~ 161 (251)
T 2zts_A 88 YEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI-----NAKRLVIDSIPSIALRL-EEERKIREVL 161 (251)
T ss_dssp HHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHT-----TCSEEEEECHHHHHHHS-SSGGGHHHHH
T ss_pred HHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhc-----CCcEEEEEcHHHHhhhc-cChHHHHHHH
Confidence 9999999999998754322110 1112233456666666666543 34579999999998653 4556778889
Q ss_pred HHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceee
Q 024921 162 HYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHN 241 (260)
Q Consensus 162 ~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e 241 (260)
+.|..++.+.+++++++++...+...+ ..-...+.+.||.+|.++--..+. +..=.|+|.+-... + ..+..
T Consensus 162 ~~L~~~a~~~~i~vi~~~q~~~~~~~~-~~~~~~~~~~aD~vi~l~~~~~~~--~~~R~l~I~K~R~~-~-----~~~~~ 232 (251)
T 2zts_A 162 LKLNTILLEMGVTTILTTEAPDPQHGK-LSRYGIEEFIARGVIVLDLQEKNI--ELKRYVLIRKMRET-R-----HSMKK 232 (251)
T ss_dssp HHHHHHHHHHCCEEEEEECCC----CC-SSSSSCGGGGCSEEEEEEEEECSS--SEEEEEEEEEETTC-C-----CCCBE
T ss_pred HHHHHHHHHcCCCeEEEEEEecccccc-cccCCceeEEeeEEEEEEEEecCC--eEEEEEEEEEcCCC-C-----CCCEE
Confidence 999999889999999888854221100 011234678999999887544432 22224667653321 0 13467
Q ss_pred EeEEEecCcEEEeeCCc
Q 024921 242 FHYKVKENTVEYFYPGS 258 (260)
Q Consensus 242 ~lY~v~D~~Vk~F~rG~ 258 (260)
+.|.+.++|+++|++++
T Consensus 233 ~~f~It~~Gi~v~p~~~ 249 (251)
T 2zts_A 233 YPFEIGPNGIVVYPSGE 249 (251)
T ss_dssp EEEEEETTEEEECC---
T ss_pred EEEEEeCCcEEEeCccc
Confidence 88999999999998875
No 3
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.07 E-value=5.8e-09 Score=91.50 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=141.1
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||+.|| +. .|+|+.+||+...++.+.-|-.+|+...++.+.+ +++++|..+..-....++.+|+|+..+.+
T Consensus 9 ~LD~~l~--GG----l~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~--~~~~~~~e~~~~l~~~~~~~G~dl~~~~~ 80 (260)
T 3bs4_A 9 ELDREIG--KI----KKHSLILIHEEDASSRGKDILFYILSRKLKSDNL--VGMFSISYPLQLIIRILSRFGVDVIKYLE 80 (260)
T ss_dssp HHHHHHC--CB----CTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCE--EEEEECSSCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhC--CC----CCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCc--EEEEEEeCCHHHHHHHHHHcCCCHHHHhh
Confidence 3577773 22 2479999999667888888889999999988766 99999999999999999999999999999
Q ss_pred CCceEEeecccccCCCCCCCC----CC-CcchHHH---HHHHHHH------hcCCCCCCCCcEEEEEeChhHHHHHcCCC
Q 024921 88 NKRFIFFDMLMLRCPDVDEGK----SS-EGGLVLL---YEKILKT------ICGLPGDKKDYVTIMIDDISLVEVAANGG 153 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~----~~-~~~l~~L---~~~I~~~------l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~ 153 (260)
+|++.++|.+...+...+..+ +. +-....+ +..+.+. +.+.. ....++++||.++.+..++ .
T Consensus 81 ~g~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~--~~~rvv~vidsldsl~~~~--~ 156 (260)
T 3bs4_A 81 NHRLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLF--EGRELYGFAISMSGYLEVF--T 156 (260)
T ss_dssp TTSEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCS--TTCCEEEEEETGGGGGGTS--C
T ss_pred CCcEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhcc--CCceEEEEEeecchHHHHh--C
Confidence 999999999875543211100 00 1223334 3344333 22211 1246678999999997543 5
Q ss_pred hHHHHHHHHHHHHh------hcc-cCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEec
Q 024921 154 SDYVLDFLHYCHAL------TSE-FDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNK 226 (260)
Q Consensus 154 ~~~v~~fi~~l~~~------~~~-~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~ 226 (260)
..+...++..+.+. ..+ ..++.+++.. +... ..+...+.+.||.+|.++-...+ ..+.=.|.|.+.
T Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~~~----~~~~~~l~~laD~VI~lr~~e~~--g~~rR~L~V~K~ 229 (260)
T 3bs4_A 157 PEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GVKD----KRVLLSVYRRADYVLKTRSSLGE--NGIKRELLVIKT 229 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SCSC----HHHHHHHHHHCSEEEEEEEEEET--TEEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CCcc----cccccceEEEeeEEEEEEEEecC--CceEEEEEEEEC
Confidence 56666666555443 222 4444444444 3322 23456678899999999887544 345567888774
Q ss_pred CCCCCCCCCCCceeeEeEEEecC
Q 024921 227 GTSHRLGRSGNKIHNFHYKVKEN 249 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v~D~ 249 (260)
... ......++|.|...|+
T Consensus 230 Rg~----~~~~~~re~~i~~~~~ 248 (260)
T 3bs4_A 230 PKP----IEELVRFEYEFKGNEP 248 (260)
T ss_dssp CC---------CEEEEEEETTEE
T ss_pred CCC----CcCCceEEEEEecCCc
Confidence 432 1222345566654443
No 4
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.03 E-value=1.4e-08 Score=86.21 Aligned_cols=224 Identities=11% Similarity=0.119 Sum_probs=149.4
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||..|+- . .++|++++|....|+.-+.|..+++....+.+.+ |+++++..+.......++++|+++....
T Consensus 10 ~~LD~~l~g--G----l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~--v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 10 PGVDEILHG--G----IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEP--GIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp TTHHHHTTT--S----EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCC--EEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred hhHHHHcCC--C----CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe--EEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 346877631 1 2479999999999999999999999888876655 9999999988877777888999988777
Q ss_pred cCCceEEeecccccCCCCCC-C---CCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHH
Q 024921 87 DNKRFIFFDMLMLRCPDVDE-G---KSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLH 162 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~-~---~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~ 162 (260)
..+++.++|.....+..... . ...+..+..+...+.+.+++. +..+||||.+..+. +.+..+...++.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~vviD~~~~l~---~~~~~~~~~~l~ 153 (247)
T 2dr3_A 82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDI-----NAKRVVVDSVTTLY---INKPAMARSIIL 153 (247)
T ss_dssp HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHH-----TCCEEEEETSGGGT---TTCGGGHHHHHH
T ss_pred hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHh-----CCCEEEECCchHhh---cCCHHHHHHHHH
Confidence 77899999965543322110 0 011234556666777666543 34589999999885 233445567777
Q ss_pred HHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeE
Q 024921 163 YCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNF 242 (260)
Q Consensus 163 ~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~ 242 (260)
.+...+.+.+++++++.|...... .... ..+.+.||.++.++.-..+ ....=.++|.+..... .....+
T Consensus 154 ~l~~~~~~~~~~vi~~~h~~~~~~-~~~~--~~~~~~~D~vi~L~~~~~~--~~~~r~l~v~K~R~~~------~~~~~~ 222 (247)
T 2dr3_A 154 QLKRVLAGTGCTSIFVSQVSVGER-GFGG--PGVEHGVDGIIRLDLDEID--GELKRSLIVWKMRGTS------HSMRRH 222 (247)
T ss_dssp HHHHHHHHTTCEEEEEEECC-----CCC---CCHHHHSSEEEEEEEEEET--TEEEEEEEEEEETTSC------CCCBCE
T ss_pred HHHHHHHHCCCeEEEEecCCCCcc-cccc--cccceeEEEEEEEEEEccC--CeeEEEEEEEECCCCC------CCCceE
Confidence 777776677788888888643211 0000 0356888999998765322 1233456665533211 123678
Q ss_pred eEEEecCcEEEeeCC
Q 024921 243 HYKVKENTVEYFYPG 257 (260)
Q Consensus 243 lY~v~D~~Vk~F~rG 257 (260)
.|.+.++|++++.+.
T Consensus 223 ~f~i~~~Gi~~~~~~ 237 (247)
T 2dr3_A 223 PFDITDKGIIVYPDK 237 (247)
T ss_dssp EEEEETTEEEECTTC
T ss_pred EEEEcCCCEEEecCc
Confidence 999999999999764
No 5
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.99 E-value=3.4e-08 Score=82.83 Aligned_cols=222 Identities=13% Similarity=0.139 Sum_probs=142.0
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+.||..++ +. .++|++++|....|+.=+.|+.++.......+.+ |+++++..+.......++++|++.....
T Consensus 10 ~~Ld~~~~--gg----i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 10 LDFDKLIQ--GG----IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP--CIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp HHHHGGGT--TS----EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCC--EEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred hHHHHHhc--CC----CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCe--EEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 45777773 01 1478999999999999999999999877765555 9999988877776666778899888766
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHA 166 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~ 166 (260)
.. ++.++|.....+..... .. ......+...+...+.... ....+||||.|..++ +.+......+++.++.
T Consensus 82 ~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---~~~~llilDe~~~~~---~~d~~~~~~~~~~l~~ 152 (235)
T 2w0m_A 82 EK-KLIIIDALMKEKEDQWS-LV-NLTPEELVNKVIEAKQKLG---YGKARLVIDSVSALF---LDKPAMARKISYYLKR 152 (235)
T ss_dssp TT-TEEEEECCC----CTTB-CS-SCCHHHHHHHHHHHHHHHC---SSCEEEEEETGGGGS---SSCGGGHHHHHHHHHH
T ss_pred hC-CEEEEeccccccCceee-ec-CCCHHHHHHHHHHHHHhhC---CCceEEEEECchHhh---cCCHHHHHHHHHHHHH
Confidence 54 78888877643321000 00 1134555555555444321 123499999999874 3345556677777777
Q ss_pred hhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEE
Q 024921 167 LTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKV 246 (260)
Q Consensus 167 ~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v 246 (260)
++.+.++++++..|.....+ +... ..+.+.||.++.++.-..+ .+..-.|+|.+..... .....+.|.+
T Consensus 153 ~~~~~~~~vi~~~h~~~~~~-~~~~--~~~~~~~d~vi~l~~~~~~--~~~~r~l~v~K~r~~~------~~~~~~~f~i 221 (235)
T 2w0m_A 153 VLNKWNFTIYATSQYAITTS-QAFG--FGVEHVADGIIRFRRMIRN--GELHRYILIEKMRQTD------HDKHVWEIDI 221 (235)
T ss_dssp HHHHTTEEEEEEEC--------------CHHHHCSEEEEEEEEEET--TEEEEEEEEEEETTCC------CCCSCEEEEE
T ss_pred HHHhCCCeEEEEeccCcccc-cccc--cchheeeeEEEEEEEEecC--CcEEEEEEEEeccCCc------ccceeEEEEE
Confidence 76666778888888652111 1111 4577889999998765432 2345577776643321 1125799999
Q ss_pred ecC-cEEEeeC
Q 024921 247 KEN-TVEYFYP 256 (260)
Q Consensus 247 ~D~-~Vk~F~r 256 (260)
.++ |+++|.|
T Consensus 222 ~~~~Gi~~~~~ 232 (235)
T 2w0m_A 222 VNGKGIVLKGR 232 (235)
T ss_dssp ETTTEEEEEEE
T ss_pred cCCCCeEEecC
Confidence 999 9999976
No 6
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=98.77 E-value=1e-07 Score=82.38 Aligned_cols=162 Identities=20% Similarity=0.372 Sum_probs=118.1
Q ss_pred hhhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccc
Q 024921 6 LNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQ 85 (260)
Q Consensus 6 ~~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~ 85 (260)
.-||...|.+++. .| |+||-|+++-++..|+.-|+.++...+.+.+|++|||.-- |-..+
T Consensus 9 llLl~RLLsLre~-SP------ltLvLDSLeQsA~pLi~E~i~rak~~~~k~~IIyvSFETl-------------~kP~~ 68 (270)
T 4a8j_B 9 VILLKRILSLTES-SP------FILCLDSIAQTSYKLIQEFVHQSKSKGNEYPIVYISFETV-------------NKPSY 68 (270)
T ss_dssp HHHHHHHHTTCSC-CS------EEEEEEBTTBCSHHHHHHHHHHHHHTSCCCCEEEEESSCC-------------SCCTT
T ss_pred HHHHHHHhcccCC-CC------eEEEeecccccChHHHHHHHHHHhhccCCCcEEEEEeecc-------------cCCCC
Confidence 4588999999888 55 9999999999999999999999987555566999998731 11222
Q ss_pred ccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHH
Q 024921 86 RDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCH 165 (260)
Q Consensus 86 ~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~ 165 (260)
.+ .|||+-. ..++++.++|...+..-......+.+||||.+..+.. .++-.|+..+.
T Consensus 69 ad----~FI~a~~-------------ksl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~------~~L~~FlsSi~ 125 (270)
T 4a8j_B 69 CT----QFIDATQ-------------MDFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST------EYITRFLSEIA 125 (270)
T ss_dssp CS----EEEETTS-------------SCHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG------GGHHHHHHHHC
T ss_pred CC----eeeEcCC-------------CCHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh------hhHHHHHHHhh
Confidence 22 6888855 3478888888777643211123578999999998862 57778886652
Q ss_pred HhhcccCCeEEEEeeccCCCCCC---------hhHHHHHcchhcceEEEeccCCCcCc
Q 024921 166 ALTSEFDCSLITLNHEDIYSSME---------RPTLILQMEYLADILIKAEPLSTGLA 214 (260)
Q Consensus 166 ~~~~~~~~~lv~l~h~~~~~~~e---------~~~l~~~L~h~a~~~i~l~pL~TG~a 214 (260)
.-.+++|...|.|.+.... -..=+..|.|+|.-+++|.|+.++..
T Consensus 126 ----sP~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v~~~~~~~~ 179 (270)
T 4a8j_B 126 ----SPHCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDIDVVLTGTL 179 (270)
T ss_dssp ----CTTEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEEEECCCSSC
T ss_pred ----cCCcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEEecCCCCCc
Confidence 2356899999988764211 12346779999999999999998874
No 7
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.68 E-value=7.9e-07 Score=79.83 Aligned_cols=210 Identities=12% Similarity=0.127 Sum_probs=129.6
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccC--chhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANP--FSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~--~~hy~~~~~KlG~ 80 (260)
+-||.+|| +. .|.|++++|....++.=+.|.+++..++.+. +.+.+|+++++..+ .......++++|+
T Consensus 94 ~~LD~~L~--GG----l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 94 QALDGLLA--GG----IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp HHHHHHTT--TS----EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hhHHHhcC--CC----CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35788884 11 2479999999999999999999999887654 11245999999987 5666777889999
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--C-CC----
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--N-GG---- 153 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g-~~---- 153 (260)
+.....+ ++.+.+..+ ...+..+...+...+.+. ....+||||.+..+...- | ..
T Consensus 168 ~~~~~~~--~l~~~~~~~------------~~~~~~~l~~l~~~~~~~----~~~~lvVIDsl~~l~~~~~~~~g~~~~r 229 (324)
T 2z43_A 168 DIDNVMN--NIYYIRAIN------------TDHQIAIVDDLQELVSKD----PSIKLIVVDSVTSHFRAEYPGRENLAVR 229 (324)
T ss_dssp CHHHHHH--TEEEEECCS------------HHHHHHHHHHHHHHHHHC----TTEEEEEETTTTHHHHHHSCTTTSHHHH
T ss_pred CHHHHhc--cEEEEeCCC------------HHHHHHHHHHHHHHHHhc----cCCCEEEEeCcHHHhhhhhcCcccHHHH
Confidence 8765432 344444322 111223445555555431 246799999999997531 1 11
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEeeccCCC-----CCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCC
Q 024921 154 SDYVLDFLHYCHALTSEFDCSLITLNHEDIYS-----SMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGT 228 (260)
Q Consensus 154 ~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~-----~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~ 228 (260)
..++..+++.|+.++.+.++++|+++|..... +.........+.|.||++|.++.-. | +. -.++|.+...
T Consensus 230 ~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r~~-~---~~-r~~~v~k~~~ 304 (324)
T 2z43_A 230 QQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKSR-G---NR-RIARVVDAPH 304 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEECS-T---TE-EEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEEcC-C---Ce-EEEEEEECCC
Confidence 12467888888888888889999888853211 1112335567999999999998754 3 11 2555554332
Q ss_pred CCCCCCCCCceeeEeEEEecCcEEE
Q 024921 229 SHRLGRSGNKIHNFHYKVKENTVEY 253 (260)
Q Consensus 229 ~~~~~~~~~~~~e~lY~v~D~~Vk~ 253 (260)
. .+.++.|.+.++|++.
T Consensus 305 ~--------p~~~~~f~I~~~Gi~~ 321 (324)
T 2z43_A 305 L--------PEGEVVFALTEEGIRD 321 (324)
T ss_dssp S--------CCEEEEEEEETTEEEC
T ss_pred C--------CceEEEEEEeCCCccc
Confidence 1 2356899999999875
No 8
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.61 E-value=9.2e-07 Score=79.01 Aligned_cols=209 Identities=14% Similarity=0.118 Sum_probs=137.1
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC------------C-C-CCeEEEEEeccC--chh
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP------------T-S-SNVIIFVAFANP--FSH 70 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~------------~-~-~~~Vvlvs~~~~--~~h 70 (260)
+-||..|| +. .|.|++++|....++.=++|.+++..++... + . +.+|+++++..+ ...
T Consensus 85 ~~LD~~l~--GG----l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~ 158 (322)
T 2i1q_A 85 SELDSVLG--GG----LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPER 158 (322)
T ss_dssp HHHHHHTT--SS----EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHH
T ss_pred hhHHHhcC--CC----ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHH
Confidence 45788884 11 2479999999999999999999999875321 1 1 146999999998 567
Q ss_pred HHHHHHHHhccccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-
Q 024921 71 YDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA- 149 (260)
Q Consensus 71 y~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~- 149 (260)
....++++|++...+.+ ++.+.+..+ ...+..+...+.+.+.+. ....+||||.+..+...
T Consensus 159 l~~~~~~~g~~~~~~~~--~l~~~~~~~------------~~~~~~~l~~l~~~~~~~----~~~~lvVIDsl~~l~~~~ 220 (322)
T 2i1q_A 159 IMQMAEHAGIDGQTVLD--NTFVARAYN------------SDMQMLFAEKIEDLIQEG----NNIKLVVIDSLTSTFRNE 220 (322)
T ss_dssp HHHHHHHHTCCHHHHHH--TEEEEECSS------------HHHHHHHHHTHHHHHHTT----CEEEEEEEECSSHHHHHH
T ss_pred HHHHHHHcCCCHHHHhc--CEEEEeCCC------------HHHHHHHHHHHHHHHhhc----cCccEEEEECcHHHHHHH
Confidence 77788899998765432 344444322 111223444555555431 24678999999999753
Q ss_pred cC--CC----hHHHHHHHHHHHHhhcccCCeEEEEeeccCCC-----CCChhHHHHHcchhcceEEEeccCCCcCcccee
Q 024921 150 AN--GG----SDYVLDFLHYCHALTSEFDCSLITLNHEDIYS-----SMERPTLILQMEYLADILIKAEPLSTGLATDVH 218 (260)
Q Consensus 150 ~g--~~----~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~-----~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVt 218 (260)
.. .+ ..++..+++.|+.++.+.++++|+++|..... +.........+.|.||++|.++.-. | +..
T Consensus 221 ~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~~-~---~~r 296 (322)
T 2i1q_A 221 YTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGK-G---DKR 296 (322)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEECS-T---TEE
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEecC-C---CeE
Confidence 11 11 12467888889888888889988888743211 1112234567999999999998654 3 111
Q ss_pred EEEEEEecCCCCCCCCCCCceeeEeEEEecCcEE
Q 024921 219 GQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 219 G~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
.++|.+.+.. .+.++.|.+.++|++
T Consensus 297 -~~~v~k~~~~--------p~~~~~f~I~~~Gi~ 321 (322)
T 2i1q_A 297 -VAKLYDSPHL--------PDAEAIFRITEKGIQ 321 (322)
T ss_dssp -EEEEEECSSS--------CCEEEEEEEETTEEE
T ss_pred -EEEEEECCCC--------CCeEEEEEEeCCCcC
Confidence 4555443321 235789999998875
No 9
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.49 E-value=8.6e-06 Score=73.70 Aligned_cols=211 Identities=12% Similarity=0.128 Sum_probs=135.7
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccC--chhHHHHHHHHhcc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANP--FSHYDRILRKLGCN 81 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~--~~hy~~~~~KlG~n 81 (260)
-||.+|| +. .|.|++++|....++.=+.|.+++..++... +.+.+|+++++..+ .......++++|++
T Consensus 110 ~LD~~Lg--GG----l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~ 183 (343)
T 1v5w_A 110 EFDKLLG--GG----IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD 183 (343)
T ss_dssp HHHHHTT--SS----BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred hHHHHhc--CC----CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4788885 11 2479999999999999999999999987652 12345999999996 55777788899998
Q ss_pred ccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-C--CC----h
Q 024921 82 LVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-N--GG----S 154 (260)
Q Consensus 82 L~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g--~~----~ 154 (260)
.....+ ++.+.+..+ ...+..+...+...+.+.. ....+||||.+..+...- . .. .
T Consensus 184 ~~~~l~--~l~~~~~~~------------~e~~~~ll~~l~~~i~~~~---~~~~lvVIDsl~~l~~~~~~~~g~~~~r~ 246 (343)
T 1v5w_A 184 HDAVLD--NVLYARAYT------------SEHQMELLDYVAAKFHEEA---GIFKLLIIDSIMALFRVDFSGRGELAERQ 246 (343)
T ss_dssp HHHHHH--TEEEEECCS------------TTHHHHHHHHHHHHHHHSC---SSEEEEEEETSGGGHHHHCCGGGCHHHHH
T ss_pred HHHHHh--ceeEeecCC------------HHHHHHHHHHHHHHHHhcC---CCccEEEEechHHHHHHHhcccccHHHHH
Confidence 765433 344443322 1112234444555554321 246799999999998541 1 11 1
Q ss_pred HHHHHHHHHHHHhhcccCCeEEEEeeccCCCCC--------ChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEec
Q 024921 155 DYVLDFLHYCHALTSEFDCSLITLNHEDIYSSM--------ERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNK 226 (260)
Q Consensus 155 ~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~--------e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~ 226 (260)
..+..+++.|+.++.+.++++|+++|.....+. .....-..+.|.||++|.++.-. | + .-.++|.+.
T Consensus 247 ~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~-~---~-~r~~~v~K~ 321 (343)
T 1v5w_A 247 QKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR-G---E-LRIAKIYDS 321 (343)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEESS-T---T-EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcC-C---C-EEEEEEEEC
Confidence 236788888888888888999888885421110 11112335899999999999654 3 1 125666654
Q ss_pred CCCCCCCCCCCceeeEeEEEecCcEEEe
Q 024921 227 GTSHRLGRSGNKIHNFHYKVKENTVEYF 254 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v~D~~Vk~F 254 (260)
... .+.++.|.+.++|++..
T Consensus 322 r~~--------p~~~~~f~I~~~Gi~~~ 341 (343)
T 1v5w_A 322 PEM--------PENEATFAITAGGIGDA 341 (343)
T ss_dssp TTC--------CSSCEEEEEETTEEEEC
T ss_pred CCC--------CCeeEEEEEeCCCccCC
Confidence 321 12567999999999864
No 10
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.42 E-value=2.1e-05 Score=66.57 Aligned_cols=217 Identities=10% Similarity=0.117 Sum_probs=129.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCP 102 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~ 102 (260)
++|.++.|....|+.=+-|+..++...+ ..+.+ ++++............++++|+........+.+.++|.......
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP--GVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC--EEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe--EEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 5799999999999999999999986555 54455 88999888887777788889999888777888999997764321
Q ss_pred CCCC---CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEe
Q 024921 103 DVDE---GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLN 179 (260)
Q Consensus 103 ~~~~---~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~ 179 (260)
.... .......+..+.+.+...+... .+.++|+|.|..++... .++.....++..+.....+.++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~p~~lilDep~~~ld~~-~d~~~~~~~l~~l~~~l~~~g~tii~vt 179 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAI-----NAKRLVIDSIPSIALRL-EEERKIREVLLKLNTILLEMGVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHT-----TCSEEEEECHHHHHHHS-SSGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhh-----CCCEEEEccHHHHHhhc-CCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1000 0011223455555555555432 46689999999998532 2333333434333333234567888888
Q ss_pred eccCCCCCChhHHHHHcchhc-ceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEeeCCc
Q 024921 180 HEDIYSSMERPTLILQMEYLA-DILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGS 258 (260)
Q Consensus 180 h~~~~~~~e~~~l~~~L~h~a-~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~rG~ 258 (260)
|.-....... ....+.+.| |-++-++--..+ ....=.++|.+-.... .....+.|.+.|+|++++++.+
T Consensus 180 H~~~~~~~~~--~~~~i~~~~aD~vi~l~~~~~~--~~~~r~l~i~K~r~~~------~~~~~~~~~i~~~Gi~v~~~~~ 249 (251)
T 2ehv_A 180 EAPDPQHGKL--SRYGIEEFIARGVIVLDLQEKN--IELKRYVLIRKMRETR------HSMKKYPFEIGPNGIVVYPSGE 249 (251)
T ss_dssp CCC----CCS--SSSSCGGGGCSEEEEEEEEECS--SSEEEEEEEEEETTCC------CCCBEEEEEEETTEEEECC---
T ss_pred CCCCCCcccc--cccChhhEeeeEEEEEeeeccC--CeeEEEEEEEEccCCC------cCCceEEEEECCCCeEEcCCcc
Confidence 8642210000 012346777 988888643222 1233445555532111 1235799999999999998754
No 11
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.41 E-value=7.3e-06 Score=69.18 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=124.8
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCC----CCCeEEEEEeccC--chhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPT----SSNVIIFVAFANP--FSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~----~~~~Vvlvs~~~~--~~hy~~~~~KlG~ 80 (260)
+-||.+|+ + ..++|.+++|....|+.=+.|+.++...++... ...+|++++.... .......++++|+
T Consensus 11 ~~LD~~l~--g----gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 84 (243)
T 1n0w_A 11 KELDKLLQ--G----GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL 84 (243)
T ss_dssp HHHHHHTT--T----SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hHHHHhhc--C----CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCC
Confidence 35888884 1 135799999999999999999999998765421 2345999999884 4556667888898
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--C-C--Ch-
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--N-G--GS- 154 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g-~--~~- 154 (260)
+.....+ ++.+.+..+ ...+..+...+.+.++. ....+||||.+..++... | . ..
T Consensus 85 ~~~~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~-----~~~~lliiD~~~~~~~~~~~~~~~~~~r 145 (243)
T 1n0w_A 85 SGSDVLD--NVAYARAFN------------TDHQTQLLYQASAMMVE-----SRYALLIVDSATALYRTDYSGRGELSAR 145 (243)
T ss_dssp CHHHHHH--TEEEEECCS------------HHHHHHHHHHHHHHHHH-----SCEEEEEEETSSGGGC-------CHHHH
T ss_pred CHHHHhh--CeEEEecCC------------HHHHHHHHHHHHHHHhc-----CCceEEEEeCchHHHHHHhcCCccHHHH
Confidence 8654322 344433221 11122333344444432 256799999999886321 0 0 11
Q ss_pred -HHHHHHHHHHHHhhcccCCeEEEEeeccCCCCC--------ChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEe
Q 024921 155 -DYVLDFLHYCHALTSEFDCSLITLNHEDIYSSM--------ERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLN 225 (260)
Q Consensus 155 -~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~--------e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~ 225 (260)
..+..++..++.++.+.++++++..|.....+. ........+.|.||.++.++.- .| +.. .++|.+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~-~~---~~r-~l~v~K 220 (243)
T 1n0w_A 146 QMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG-RG---ETR-ICKIYD 220 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC-ST---TEE-EEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc-CC---CeE-EEEEEE
Confidence 126677777887777778888888884321111 1112344589999999999862 22 111 455544
Q ss_pred cCCCCCCCCCCCceeeEeEEEecCcEEEee
Q 024921 226 KGTSHRLGRSGNKIHNFHYKVKENTVEYFY 255 (260)
Q Consensus 226 ~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~ 255 (260)
.... ...++.|.+.++|++.+.
T Consensus 221 ~r~~--------~~~~~~f~I~~~Gi~~~~ 242 (243)
T 1n0w_A 221 SPCL--------PEAEAMFAINADGVGDAK 242 (243)
T ss_dssp BTTB--------SCEEEEEEEETTEEECCC
T ss_pred CCCC--------CCCeEEEEEeCCccccCC
Confidence 3221 124588999999998764
No 12
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.36 E-value=1.4e-05 Score=66.38 Aligned_cols=205 Identities=14% Similarity=0.119 Sum_probs=129.4
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEecc--CchhHHHHHHHHhccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN--PFSHYDRILRKLGCNLVT 84 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~--~~~hy~~~~~KlG~nL~~ 84 (260)
+-||..++ +. .++|.+++|....|+.=+.|..++.. ..+ .+|+++++.. +...+....+..|++...
T Consensus 7 ~~LD~~l~--Gg----i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 75 (220)
T 2cvh_A 7 KSLDSLLG--GG----FAPGVLTQVYGPYASGKTTLALQTGL---LSG--KKVAYVDTEGGFSPERLVQMAETRGLNPEE 75 (220)
T ss_dssp HHHHHHTT--SS----BCTTSEEEEECSTTSSHHHHHHHHHH---HHC--SEEEEEESSCCCCHHHHHHHHHTTTCCHHH
T ss_pred HHHHHhhc--CC----CcCCEEEEEECCCCCCHHHHHHHHHH---HcC--CcEEEEECCCCCCHHHHHHHHHhcCCChHH
Confidence 46788873 11 24799999999999999999999988 222 3599999987 666777777777776543
Q ss_pred cccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC---CChHHHHHHH
Q 024921 85 QRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN---GGSDYVLDFL 161 (260)
Q Consensus 85 ~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g---~~~~~v~~fi 161 (260)
..+ ++.+.+... ......+...++..+.. ++.+||||.+..++...+ ....++..++
T Consensus 76 ~~~--~~~~~~~~~------------~~~~~~~~~~~~~l~~~------~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~ 135 (220)
T 2cvh_A 76 ALS--RFILFTPSD------------FKEQRRVIGSLKKTVDS------NFALVVVDSITAHYRAEENRSGLIAELSRQL 135 (220)
T ss_dssp HHH--HEEEECCTT------------TSHHHHHHHHHHHHCCT------TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH
T ss_pred Hhh--cEEEEecCC------------HHHHHHHHHHHHHHhhc------CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH
Confidence 221 233222211 11122333333333221 467999999998864311 1235677788
Q ss_pred HHHHHhhcccCCeEEEEeeccCCCCC--ChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCce
Q 024921 162 HYCHALTSEFDCSLITLNHEDIYSSM--ERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKI 239 (260)
Q Consensus 162 ~~l~~~~~~~~~~lv~l~h~~~~~~~--e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~ 239 (260)
+.++.++.+.+++++++.|.....+. ........+.+.||.++.++.-..+ -.-.+.|.+..... ..
T Consensus 136 ~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~~~----~~r~l~v~K~r~~~-------~~ 204 (220)
T 2cvh_A 136 QVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKP----GLRVAVLERHRFRP-------EG 204 (220)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECSST----TEEEEEEEECSSSC-------TT
T ss_pred HHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEecCC----CEEEEEEEeCCCCC-------CC
Confidence 88888877778888888885432110 0111223578899999999887533 23466666544321 22
Q ss_pred eeEeEEEecCcEEE
Q 024921 240 HNFHYKVKENTVEY 253 (260)
Q Consensus 240 ~e~lY~v~D~~Vk~ 253 (260)
..+.|.+.++|+.+
T Consensus 205 ~~~~f~I~~~Gi~~ 218 (220)
T 2cvh_A 205 LMAYFRITERGIED 218 (220)
T ss_dssp CEEEEEEETTEEEE
T ss_pred ceEEEEEeCCceec
Confidence 46899999999876
No 13
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.22 E-value=3.1e-05 Score=70.85 Aligned_cols=204 Identities=14% Similarity=0.142 Sum_probs=127.5
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. . ..|.|++++|....++.=+.|..+++..+.+.+.+ |+++++.+++.-+ .++++|+++..
T Consensus 60 ~~LD~~Lg~-G----Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~--vlyi~~E~s~~~~--~a~~~g~d~~~-- 128 (366)
T 1xp8_A 60 LSLDLALGV-G----GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGT--CAFIDAEHALDPV--YARALGVNTDE-- 128 (366)
T ss_dssp HHHHHHTSS-S----SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--EEEEESSCCCCHH--HHHHTTCCGGG--
T ss_pred HHHHHHhCC-C----CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCe--EEEEECCCChhHH--HHHHcCCCHHH--
Confidence 357888851 1 12479999999999999999999999988876655 9999999887766 47899998754
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCC-----------ChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANG-----------GSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~-----------~~~ 155 (260)
+.+.+. .....+...+...++. ....+||||.+..+...... ...
T Consensus 129 ----l~i~~~---------------~~~e~~l~~l~~l~~~-----~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r 184 (366)
T 1xp8_A 129 ----LLVSQP---------------DNGEQALEIMELLVRS-----GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQAR 184 (366)
T ss_dssp ----CEEECC---------------SSHHHHHHHHHHHHTT-----TCCSEEEEECTTTCCCSTTC--------CCHHHH
T ss_pred ----ceeecC---------------CcHHHHHHHHHHHHhc-----CCCCEEEEeChHHhccccccccccccchhhHHHH
Confidence 333321 1234555555544432 24568999999988521101 113
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEeccCCC----cCccceeEE---EEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEPLST----GLATDVHGQ---LTV 223 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~pL~T----G~a~DVtG~---L~v 223 (260)
++..+++.|..++.+.++.+|+++|.... .+.+.......+.|.|++++.++.... | .++.|. +.|
T Consensus 185 ~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~~~~k~~--~~~~g~~~~v~v 262 (366)
T 1xp8_A 185 LMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVG--NDAVANTVKIKT 262 (366)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEESCCC--------CEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecchhcccC--ccccCCEEEEEE
Confidence 46677888877788888989888885321 111223346779999999999987543 4 234443 333
Q ss_pred EecCCCCCCCCCCCceeeEeEEEe-cCcEEEe
Q 024921 224 LNKGTSHRLGRSGNKIHNFHYKVK-ENTVEYF 254 (260)
Q Consensus 224 ~~~~~~~~~~~~~~~~~e~lY~v~-D~~Vk~F 254 (260)
.+.... +..++..|.+. ++|+..|
T Consensus 263 ~Knr~~-------p~~~~~~f~i~~~~Gi~~~ 287 (366)
T 1xp8_A 263 VKNKVA-------APFKEVELALVYGKGFDQL 287 (366)
T ss_dssp EEESSS-------CCCCEEEEEEETTTEECHH
T ss_pred EcCCCC-------CCCceEEEEEEeCCCcccc
Confidence 332221 12245667764 7766543
No 14
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.06 E-value=0.00023 Score=65.84 Aligned_cols=209 Identities=13% Similarity=0.149 Sum_probs=127.5
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccC--chhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANP--FSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~--~~hy~~~~~KlG~ 80 (260)
+-||..|| .. .++|.++.|....++-=+.|++++....+.. +...+|++++.... .......++++|+
T Consensus 165 ~~LD~lLg--GG----I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl 238 (400)
T 3lda_A 165 KNLDTLLG--GG----VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL 238 (400)
T ss_dssp HHHHHHTT--TS----EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hhHHHHhc--CC----cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCC
Confidence 45777773 11 2479999999999999999999987666642 13356999999876 4456667889999
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH-c-C-CC----
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA-A-N-GG---- 153 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~-~-g-~~---- 153 (260)
+.....+ ++.+.+... ......+...+...+.. ....+||||.+..++.. + | .+
T Consensus 239 ~~~~vle--ni~~~~~~~------------~~~~~~~l~~~~~~l~~-----~~~~llVIDs~t~~~~~~~sg~g~l~~R 299 (400)
T 3lda_A 239 DPDDALN--NVAYARAYN------------ADHQLRLLDAAAQMMSE-----SRFSLIVVDSVMALYRTDFSGRGELSAR 299 (400)
T ss_dssp CHHHHHH--TEEEEECCS------------HHHHHHHHHHHHHHHHH-----SCEEEEEEETGGGGCC------CCHHHH
T ss_pred ChHhHhh--cEEEeccCC------------hHHHHHHHHHHHHHHHh-----cCCceEEecchhhhCchhhcCccchHHH
Confidence 8764322 233332211 01112233333343332 24678999999988532 1 1 11
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEeeccCCCC--------CChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEe
Q 024921 154 SDYVLDFLHYCHALTSEFDCSLITLNHEDIYSS--------MERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLN 225 (260)
Q Consensus 154 ~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~--------~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~ 225 (260)
...+..+++.|+.++.+.++++|++.|.....+ ......-..+.|.||.+|.++.-. | + .-.++|.+
T Consensus 300 q~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~-g---~-~R~l~v~K 374 (400)
T 3lda_A 300 QMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK-G---C-QRLCKVVD 374 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS-T---T-EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC-C---C-cEEEEEEc
Confidence 112356777788887788899999999632111 111123467899999999998743 2 1 23566666
Q ss_pred cCCCCCCCCCCCceeeEeEEEecCcEEE
Q 024921 226 KGTSHRLGRSGNKIHNFHYKVKENTVEY 253 (260)
Q Consensus 226 ~~~~~~~~~~~~~~~e~lY~v~D~~Vk~ 253 (260)
.+.. .+.+..|.+.++|++-
T Consensus 375 ~R~~--------p~~e~~F~It~~Gi~~ 394 (400)
T 3lda_A 375 SPCL--------PEAECVFAIYEDGVGD 394 (400)
T ss_dssp CSSS--------CSCEEEEEEETTEEEC
T ss_pred CCCC--------CCCceEEEEeCCcccc
Confidence 4432 1234899999999874
No 15
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.02 E-value=0.00029 Score=63.85 Aligned_cols=213 Identities=14% Similarity=0.107 Sum_probs=131.2
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccCc--hhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANPF--SHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~~--~hy~~~~~KlG~ 80 (260)
+-||..||. ..|.|+++.|....|+.=+=|++++...+.+. +.+-+|+++...+.+ .....++++.|+
T Consensus 118 ~~LD~lL~g------gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGG------GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTS------SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTC
T ss_pred HHHHHHhcC------CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 357888864 23479999999999999999999998876432 111258999988764 455567778888
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CC-Ch---
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NG-GS--- 154 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~-~~--- 154 (260)
+..... .++.|.+... +....++...+...+..+.+....+.+||||.|..++..- |- +.
T Consensus 192 ~~~~v~--~ni~~~~~~~------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r 257 (349)
T 1pzn_A 192 DPDEVL--KHIYVARAFN------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 257 (349)
T ss_dssp CHHHHG--GGEEEEECCS------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHH
T ss_pred CHHHHh--hCEEEEecCC------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHH
Confidence 765443 2455544321 1123444455555555443333467899999999998542 10 11
Q ss_pred -HHHHHHHHHHHHhhcccCCeEEEEeeccCCCC-----CChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCC
Q 024921 155 -DYVLDFLHYCHALTSEFDCSLITLNHEDIYSS-----MERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGT 228 (260)
Q Consensus 155 -~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~-----~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~ 228 (260)
..+..+++.|+.++.+.++++|+..|.....+ ......-..+.|.++..|.++.-. | ..++.+-..
T Consensus 258 ~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~l~~~~-~-------~~Ri~k~~k 329 (349)
T 1pzn_A 258 QQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK-G-------GKRIARLID 329 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEEEEECT-T-------SEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEEEEEcC-C-------CeEEEEEEe
Confidence 23677788888877777888998888542111 011123456789999999988632 2 234433221
Q ss_pred CCCCCCCCCceeeEeEEEecCcEE
Q 024921 229 SHRLGRSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 229 ~~~~~~~~~~~~e~lY~v~D~~Vk 252 (260)
. -+..+.++.|.+.++|++
T Consensus 330 s-----~~~~~~~~~f~It~~Gi~ 348 (349)
T 1pzn_A 330 A-----PHLPEGEAVFSITEKGIE 348 (349)
T ss_dssp S-----SSSCCSEEEEEEETTEEE
T ss_pred C-----CCCCCeEEEEEEcCCCCC
Confidence 1 011234689999998875
No 16
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=0.00012 Score=66.66 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=120.4
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. .. .|+|++++|....++.=+.|..+++..+...+.+ |++++..+.+... .++++|++...
T Consensus 47 ~~LD~~Lg~-GG----i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~--VlyId~E~s~~~~--ra~rlgv~~~~-- 115 (356)
T 3hr8_A 47 LAIDIATGV-GG----YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV--AAFIDAEHALDPV--YAKNLGVDLKS-- 115 (356)
T ss_dssp HHHHHHTSS-SS----EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC--EEEEESSCCCCHH--HHHHHTCCGGG--
T ss_pred HHHHHHhcc-CC----ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe--EEEEecccccchH--HHHHcCCchhh--
Confidence 458888862 11 2479999999999999999999999988766655 9999998877654 78899998754
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH--Hc----CC-----ChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV--AA----NG-----GSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~--~~----g~-----~~~ 155 (260)
+.+... .....+...+...+.. ....++|||.+..+.. .+ |- ...
T Consensus 116 ----l~i~~~---------------~~~e~~l~~~~~l~~~-----~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar 171 (356)
T 3hr8_A 116 ----LLISQP---------------DHGEQALEIVDELVRS-----GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQAR 171 (356)
T ss_dssp ----CEEECC---------------SSHHHHHHHHHHHHHT-----SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHH
T ss_pred ----hhhhhc---------------cCHHHHHHHHHHHhhh-----cCCCeEEehHhhhhcChhhhcccchhhHHHHHHH
Confidence 222221 1233444444444432 1355899999887752 11 11 134
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccC-----CCCCChhHHHHHcchhcceEEEeccCC---CcCccceeEEEEEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDI-----YSSMERPTLILQMEYLADILIKAEPLS---TGLATDVHGQLTVL 224 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~-----~~~~e~~~l~~~L~h~a~~~i~l~pL~---TG~a~DVtG~L~v~ 224 (260)
.+..+++.|..++.+.++++|++.|.-. +.+.+...--..+.|.++++|.++... -| .++.|..+..
T Consensus 172 ~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g--~~~~g~~~~v 246 (356)
T 3hr8_A 172 LMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEG--KDVIGNVISV 246 (356)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEET--TEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccccC--CcccccEEEE
Confidence 5667777788888888888988888621 112233456788999999999998532 23 3566655443
No 17
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.96 E-value=7.4e-05 Score=67.87 Aligned_cols=167 Identities=16% Similarity=0.120 Sum_probs=111.4
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||.+||. . ..|+|++++|....++.=+.|..+++..+.+.+.+ |+++++.+++.-. .++++|+++..
T Consensus 48 ~LD~~Lg~-G----Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~--vlyi~~E~~~~~~--~a~~lG~~~~~--- 115 (349)
T 2zr9_A 48 SLDVALGI-G----GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI--AAFIDAEHALDPE--YAKKLGVDTDS--- 115 (349)
T ss_dssp HHHHHTSS-S----SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--EEEEESSCCCCHH--HHHHTTCCGGG---
T ss_pred HHHHHhcc-C----CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe--EEEEECCCCcCHH--HHHHcCCCHHH---
Confidence 47888862 1 12479999999999999999999999888877666 9999999877654 47899998754
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH--Hc----CC-----ChHH
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV--AA----NG-----GSDY 156 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~--~~----g~-----~~~~ 156 (260)
+.+.+. ....+++..+...+.. ....+||||.+..+.. -+ |- ...+
T Consensus 116 ---l~i~~~---------------~~~e~~l~~~~~l~~~-----~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~ 172 (349)
T 2zr9_A 116 ---LLVSQP---------------DTGEQALEIADMLVRS-----GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARL 172 (349)
T ss_dssp ---CEEECC---------------SSHHHHHHHHHHHHTT-----TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHH
T ss_pred ---eEEecC---------------CCHHHHHHHHHHHHhc-----CCCCEEEEcChHhhcchhhhccccccchhhHHHHH
Confidence 233221 1234444444443332 2466899999998861 11 11 1124
Q ss_pred HHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEeccC
Q 024921 157 VLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEPL 209 (260)
Q Consensus 157 v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~pL 209 (260)
+..+++.+...+.+.++++|++.|.... .+.+....-..+.|.|++++.++..
T Consensus 173 ~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 173 MSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEe
Confidence 5677777777777888999999885421 1111122356789999999998875
No 18
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.86 E-value=5e-05 Score=69.25 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=108.3
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||.+||. . ..|++++++|....++.=+.|..+++..+.+.+.+ |+++++.++++- ..++++|+++..
T Consensus 50 ~LD~~Lg~-G----Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~--vlyid~E~s~~~--~~a~~~g~~~~~--- 117 (356)
T 1u94_A 50 SLDIALGA-G----GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDP--IYARKLGVDIDN--- 117 (356)
T ss_dssp HHHHHTSS-S----SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEEESSCCCCH--HHHHHTTCCGGG---
T ss_pred HHHHHhcc-C----CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEeCCCCccH--HHHHHcCCChhh---
Confidence 47888851 0 12479999999999999999999999988876665 999999887663 347899998654
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH--Hc----CC-----ChHH
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV--AA----NG-----GSDY 156 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~--~~----g~-----~~~~ 156 (260)
+.+++. .....+...++..++. ....+||||.+..+.. .+ |- ...+
T Consensus 118 ---l~i~~~---------------~~~e~~~~~~~~l~~~-----~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~ 174 (356)
T 1u94_A 118 ---LLCSQP---------------DTGEQALEICDALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM 174 (356)
T ss_dssp ---CEEECC---------------SSHHHHHHHHHHHHHH-----TCCSEEEEECGGGCCCHHHHTTC------CHHHHH
T ss_pred ---eeeeCC---------------CCHHHHHHHHHHHHhc-----cCCCEEEEcCHHHhcchhhhccccccchhHHHHHH
Confidence 333321 1233444444333321 1356899999998852 11 11 1124
Q ss_pred HHHHHHHHHHhhcccCCeEEEEeeccCCC-----CCChhHHHHHcchhcceEEEeccCC
Q 024921 157 VLDFLHYCHALTSEFDCSLITLNHEDIYS-----SMERPTLILQMEYLADILIKAEPLS 210 (260)
Q Consensus 157 v~~fi~~l~~~~~~~~~~lv~l~h~~~~~-----~~e~~~l~~~L~h~a~~~i~l~pL~ 210 (260)
+..+++.|..++.+.++++|+++|..... +.+....-..+.|.||+++.++...
T Consensus 175 ~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~ 233 (356)
T 1u94_A 175 MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 233 (356)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEee
Confidence 56778888777788889999888843211 1111112346899999999988754
No 19
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.76 E-value=9.6e-05 Score=67.27 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEE-EEEeChhHHHHHcC--CChHHHHHHHHHHHHhhccc--CCeEEEEeeccCCCC
Q 024921 112 GGLVLLYEKILKTICGLPGDKKDYVT-IMIDDISLVEVAAN--GGSDYVLDFLHYCHALTSEF--DCSLITLNHEDIYSS 186 (260)
Q Consensus 112 ~~l~~L~~~I~~~l~~~~~~~~~~~~-iIiDdl~~Ll~~~g--~~~~~v~~fi~~l~~~~~~~--~~~lv~l~h~~~~~~ 186 (260)
..+..++.+|++.+..- .++++ |+|-.+-.-.|.-. ....+++.|++.||++..+. +|.+++.+..+...
T Consensus 198 ~~y~~lL~~I~~~i~~~----~~~ilRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~- 272 (361)
T 4a8j_A 198 QPVSTILSQIEQTIKRN----DKKLIRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIIT- 272 (361)
T ss_dssp SCHHHHHHHHHHHHHHT----TTSEEEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSC-
T ss_pred chHHHHHHHHHHHHhcC----CCceEEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcC-
Confidence 46788999999998752 24555 88888777766321 24778999999999997754 44555556555543
Q ss_pred CChhHHHHHcchhcceEEEeccCCC-------cCccc-----eeEEEEEEecCCCCCCCCCCCceeeEeEEEecCc
Q 024921 187 MERPTLILQMEYLADILIKAEPLST-------GLATD-----VHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENT 250 (260)
Q Consensus 187 ~e~~~l~~~L~h~a~~~i~l~pL~T-------G~a~D-----VtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~ 250 (260)
. .+...+.|.||.+|+++|++. +..+| -+|-|+|.+-+.....+...+...+|-||++-+.
T Consensus 273 --~-~l~~rle~l~D~vi~L~pF~~~~~~~~~~~yk~~p~~~~~GLl~V~KLP~l~~~g~~~~~~~dlaFKl~Rkk 345 (361)
T 4a8j_A 273 --P-PLLVLLRNMFDSVINLEPFNQEMTEFLERVYKSQPGKIQHGLVHILKLPVFTDRGEMRVLKSEWAFKNGRKK 345 (361)
T ss_dssp --H-HHHHHHHHHCSEEEEEEECCHHHHHHHHHHTTTCGGGCCCEEEEEEECTTHHHHTCCCCEEEEEEEEECSSC
T ss_pred --h-HHHHHHHHhCcEEEEeeecCCchhhhcccccccCcccccceEEEEEecccccccCCCCCCccceEEEeccee
Confidence 2 689999999999999999872 22255 7999999997754332333456688999997544
No 20
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.67 E-value=0.00047 Score=74.83 Aligned_cols=206 Identities=14% Similarity=0.185 Sum_probs=132.5
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||..|+ ... . |.|++++|+...++.-+-|..+|+.+.++.+.+ |+++++..++.... ++.+|+++..+
T Consensus 20 ~~LD~lLg-~GG-i---p~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~--vlYI~tEes~~~~r--a~~lG~dl~~i- 89 (2050)
T 3cmu_A 20 LSLDIALG-AGG-L---PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDPIY--ARKLGVDIDNL- 89 (2050)
T ss_dssp HHHHHHHS-SSS-E---ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC--EEEECTTSCCCHHH--HHHTTCCTTTC-
T ss_pred HHHHHHHh-cCC-C---cCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCc--eEEEEccCcchhhH--HhhhccCcccc-
Confidence 45888885 112 2 479999999999999999999999999987766 99999999988876 67899988653
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc------CC-----ChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA------NG-----GSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~------g~-----~~~ 155 (260)
.+++. .....+.+.+ +.+.+. ....+||||.++.|.... +. ...
T Consensus 90 -----~v~~p---------------~~~e~ll~il-~~L~~~----~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR 144 (2050)
T 3cmu_A 90 -----LCSQP---------------DTGEQALEIC-DALARS----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR 144 (2050)
T ss_dssp -----EEECC---------------SSHHHHHHHH-HHHHHH----TCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHH
T ss_pred -----eecCC---------------CcHHHHHHHH-HHHHhc----cCCcEEEEcChHHhhhhcccccccccchhhHHHH
Confidence 23321 0122232222 222211 245689999999986321 00 123
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccC-----CCCCChhHHHHHcchhcceEEEeccCCCcC-ccceeE---EEEEEec
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDI-----YSSMERPTLILQMEYLADILIKAEPLSTGL-ATDVHG---QLTVLNK 226 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~-----~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~-a~DVtG---~L~v~~~ 226 (260)
.+..++..|..++.+.++++|+.++... ..+......-..+.|.||.+|.++-...-. ..++.| .++|.+.
T Consensus 145 ~l~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~fg~~~~~~gG~~l~~iaD~VI~L~r~~~vk~ge~~~G~~Rrl~V~K~ 224 (2050)
T 3cmu_A 145 MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 224 (2050)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecccccccccCcccccCCcchhhhhCcEEEEEEeccccccccccccceEEEEEEec
Confidence 4677888888888888888888877421 111122346778999999999997543200 134545 4445443
Q ss_pred CCCCCCCCCCCceeeEeEEE-ecCcEEEe
Q 024921 227 GTSHRLGRSGNKIHNFHYKV-KENTVEYF 254 (260)
Q Consensus 227 ~~~~~~~~~~~~~~e~lY~v-~D~~Vk~F 254 (260)
... ...+++-|.+ .+.|+.+.
T Consensus 225 R~~-------~p~~~~~F~I~~g~GI~~~ 246 (2050)
T 3cmu_A 225 KIA-------APFKQAEFQILYGEGINFY 246 (2050)
T ss_dssp SSS-------CSCCEEEEEEETTTEECHH
T ss_pred cCC-------CCCceEEEEEEcCCCeEEe
Confidence 322 1123566888 47777654
No 21
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.64 E-value=0.00067 Score=60.42 Aligned_cols=180 Identities=16% Similarity=0.071 Sum_probs=111.0
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHH--HHhccccccccCCc--eEEe-----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILR--KLGCNLVTQRDNKR--FIFF----- 94 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~--KlG~nL~~~~~~g~--~~fv----- 94 (260)
++|.+++|....++.=+.|..++..++..++ .+|+++|+..+......-+. ..|+++..+. +|+ +.--
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~-~~~~~l~~~~~~~l 142 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVTAGSINAQKIK-AARRDFASEDWGKL 142 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHHHHTTCCHHHHH-SCHHHHCSSCHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh-cCCCCCCHHHHHHH
Confidence 5799999999999999999999998887765 35999999987765544333 3488876653 233 1100
Q ss_pred -ecccccC-CCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CC-hHHHHHHHHHHHHhhcc
Q 024921 95 -DMLMLRC-PDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GG-SDYVLDFLHYCHALTSE 170 (260)
Q Consensus 95 -D~l~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~-~~~v~~fi~~l~~~~~~ 170 (260)
+....+. ..+-..+.....+..+...++...++.. ..+.+||||.+..+..... .. ..++..+++.|+.++.+
T Consensus 143 ~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~---~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~ 219 (315)
T 3bh0_A 143 SMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNP---GKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARE 219 (315)
T ss_dssp HHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSS---SCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcC---CCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000000112346667776766554321 1334999999998852111 11 25678888999999999
Q ss_pred cCCeEEEEeeccCCC----C--CChhHH--HHHcchhcceEEEeccC
Q 024921 171 FDCSLITLNHEDIYS----S--MERPTL--ILQMEYLADILIKAEPL 209 (260)
Q Consensus 171 ~~~~lv~l~h~~~~~----~--~e~~~l--~~~L~h~a~~~i~l~pL 209 (260)
.++++++++|..-.. + ....++ ...+.+.||++|-+..-
T Consensus 220 ~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~ 266 (315)
T 3bh0_A 220 LDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRD 266 (315)
T ss_dssp HTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEH
T ss_pred hCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecc
Confidence 999999998843110 0 001111 23578999999999764
No 22
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.63 E-value=0.0031 Score=52.22 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=118.1
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccC--chhHHHHHHHHhc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANP--FSHYDRILRKLGC 80 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~--~~hy~~~~~KlG~ 80 (260)
+-||..|+ . ..++|.++.|....|+-=|.|+..+....... ....+++++..... ......+.++.|+
T Consensus 12 ~~LD~~l~--g----gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~ 85 (231)
T 4a74_A 12 KSLDKLLG--G----GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGL 85 (231)
T ss_dssp HHHHHHTT--S----SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTS
T ss_pred hhHHhHhc--C----CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 45788883 1 13579999999999999999999998765542 11234888887764 3456677788887
Q ss_pred cccccccCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CC-ChHH-
Q 024921 81 NLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NG-GSDY- 156 (260)
Q Consensus 81 nL~~~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~-~~~~- 156 (260)
+..... .++.+..... ..........+...+.+.......+.+||+|.+..++..- +. +..+
T Consensus 86 ~~~~~~--~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 86 DPDEVL--KHIYVARAFN------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp CHHHHH--HTEEEEECCS------------HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred CHHHHh--hcEEEEecCC------------hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 655322 2344432221 0011112222333332111001357799999999987541 11 1112
Q ss_pred ---HHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCC
Q 024921 157 ---VLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLG 233 (260)
Q Consensus 157 ---v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~ 233 (260)
+..+++.++.++.+.++++|+..|.... -...+.+.||.++.++. |. .-.-.+++.+.... +
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~-------~g~~~~~~~d~~l~l~~---~~--~~~r~l~~~K~r~~-~-- 216 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQAN-------GGHILAHSATLRVYLRK---GK--GGKRIARLIDAPHL-P-- 216 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC----------------CCSEEEEEEE---CT--TSCEEEEEESCC---C--
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccC-------cchhhHhhceEEEEEEe---cC--CCeEEEEEEeCCCC-C--
Confidence 3466777777766777889999885422 13347789999999987 22 23345666654321 1
Q ss_pred CCCCceeeEeEEEecCcEE
Q 024921 234 RSGNKIHNFHYKVKENTVE 252 (260)
Q Consensus 234 ~~~~~~~e~lY~v~D~~Vk 252 (260)
..++.|.+.|+|++
T Consensus 217 -----~~~~~f~i~~~Gl~ 230 (231)
T 4a74_A 217 -----EGEAVFSITEKGIE 230 (231)
T ss_dssp -----CSCEEEEEETTEEE
T ss_pred -----CceEEEEEeccccc
Confidence 12358999998875
No 23
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.54 E-value=0.0078 Score=57.16 Aligned_cols=212 Identities=11% Similarity=0.110 Sum_probs=125.4
Q ss_pred HHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccC
Q 024921 9 LDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDN 88 (260)
Q Consensus 9 l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~ 88 (260)
|+..|+. ..++|++++|....|+.=+=|+.++.......+.+ |+.+++.++..-+...+.++|+++..+.+.
T Consensus 270 ld~vL~g------~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~--vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~ 341 (525)
T 1tf7_A 270 LDEMCGG------GFFKDSIILATGATGTGKTLLVSRFVENACANKER--AILFAYEESRAQLLRNAYSWGMDFEEMERQ 341 (525)
T ss_dssp HHHHTTS------SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC--EEEEESSSCHHHHHHHHHTTSCCHHHHHHT
T ss_pred HHHHhCC------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCC--EEEEEEeCCHHHHHHHHHHcCCCHHHHHhC
Confidence 5666643 23479999999999999999999998876655444 899999888766666667788887666566
Q ss_pred CceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhh
Q 024921 89 KRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALT 168 (260)
Q Consensus 89 g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~ 168 (260)
|.+.+.|.....++ ..+....+...+.. ..+.+||+|-++.|. . ..+..+...++..+....
T Consensus 342 g~~~~~~~~p~~LS-----------~g~~q~~~~a~~l~-----~~p~llilDp~~~Ld-~-~~~~~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 342 NLLKIVCAYPESAG-----------LEDHLQIIKSEIND-----FKPARIAIDSLSALA-R-GVSNNAFRQFVIGVTGYA 403 (525)
T ss_dssp TSEEECCCCGGGSC-----------HHHHHHHHHHHHHT-----TCCSEEEEECHHHHT-S-SSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccCC-----------HHHHHHHHHHHHHh-----hCCCEEEEcChHHHH-h-hCChHHHHHHHHHHHHHH
Confidence 66666654332111 11222222222221 246789999444443 2 223333445554443333
Q ss_pred cccCCeEEEEeeccCCCCCChhHHH-HHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEe
Q 024921 169 SEFDCSLITLNHEDIYSSMERPTLI-LQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVK 247 (260)
Q Consensus 169 ~~~~~~lv~l~h~~~~~~~e~~~l~-~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~ 247 (260)
.+.+.++++..|+....+. . ... ..+.|.||.++.++--..+ ....=.|+|.+.... + + ......|.+.
T Consensus 404 ~~~g~tvilvsh~~~~~~~-~-~~~~~~l~~~~D~vi~L~~ge~~--~~~~R~l~v~K~R~~-~----~-~~~~~~f~i~ 473 (525)
T 1tf7_A 404 KQEEITGLFTNTSDQFMGA-H-SITDSHISTITDTIILLQYVEIR--GEMSRAINVFKMRGS-W----H-DKAIREFMIS 473 (525)
T ss_dssp HHTTCEEEEEEECSSSSCC-C-SSCSSCCTTTCSEEEEEEEEEET--TEEEEEEEEEEESSS-C----C-CCBCEEEEEC
T ss_pred HhCCCEEEEEECcccccCc-c-cccCcccceeeeEEEEEEEEEeC--CEEEEEEEEEECCCC-C----C-CCCEEEEEEc
Confidence 3456788888887532210 0 000 2378899999987654322 122334555543221 1 1 1246788999
Q ss_pred cCcEEEeeC
Q 024921 248 ENTVEYFYP 256 (260)
Q Consensus 248 D~~Vk~F~r 256 (260)
++|+++..|
T Consensus 474 ~~Gi~v~~~ 482 (525)
T 1tf7_A 474 DKGPDIKDS 482 (525)
T ss_dssp SSCEEEEEE
T ss_pred CCCEEEecc
Confidence 999998754
No 24
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.49 E-value=0.00046 Score=74.89 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=116.9
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. . ..|+|++++|....++.=+.|..+++.++.+.+.+ |+++++.++.+-.. ++++|+|+..
T Consensus 369 ~~LD~lLG~-G----Gl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~--vlyis~E~s~~~~~--a~~lGvd~~~-- 437 (2050)
T 3cmu_A 369 LSLDIALGA-G----GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDPIY--ARKLGVDIDN-- 437 (2050)
T ss_dssp HHHHHHHSS-S----SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC--EEEECTTSCCCHHH--HHHTTCCTTT--
T ss_pred HHHHHHhcc-C----CccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCe--EEEEEcCCCHHHHH--HHHcCCCHHH--
Confidence 347888861 1 12579999999999999999999999999987666 99999999888653 8899998754
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH-H-----cCC-----ChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV-A-----ANG-----GSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~-~-----~g~-----~~~ 155 (260)
+.+.+. ..+.+++..++..+.. ....+||||.+..+.. . .|- ...
T Consensus 438 ----L~I~~~---------------~~~e~il~~~~~lv~~-----~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R 493 (2050)
T 3cmu_A 438 ----LLCSQP---------------DTGEQALEICDALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR 493 (2050)
T ss_dssp ----CEEECC---------------SSHHHHHHHHHHHHHH-----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHH
T ss_pred ----eEEeCC---------------CCHHHHHHHHHHHHHh-----cCCcEEEECCHHHhhcccccccccccchhhHHHH
Confidence 333321 1245566666544432 2456899999998862 1 121 123
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEeccCC
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEPLS 210 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~pL~ 210 (260)
++..+++.|..++++.++.+|+++|.... .+.+...--..+.|.||+++.++.-.
T Consensus 494 ~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 494 MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 45677777777778888999998874211 11112234567899999999988653
No 25
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.41 E-value=0.00029 Score=75.52 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=115.8
Q ss_pred hhHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccc
Q 024921 7 NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQR 86 (260)
Q Consensus 7 ~~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~ 86 (260)
+-||.+||. . ..|+|++++|....++.=+.|..+++.++.+.+.+ |+++++.++.+-. .++++|+|+...
T Consensus 369 ~~LD~lLg~-G----Gl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~--vlyis~E~s~~~~--~a~~lGvd~~~L- 438 (1706)
T 3cmw_A 369 LSLDIALGA-G----GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDPI--YARKLGVDIDNL- 438 (1706)
T ss_dssp HHHHHHTSS-S----SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEECTTSCCCHH--HHHHTTCCGGGC-
T ss_pred HHHHHHhcc-C----CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEccCchHHH--HHHHcCCCHHHe-
Confidence 347888861 0 12579999999999999999999999999887666 9999999988875 388999998653
Q ss_pred cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHH------cC-----CChH
Q 024921 87 DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVA------AN-----GGSD 155 (260)
Q Consensus 87 ~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~------~g-----~~~~ 155 (260)
.+++. ....++...++..++. ....+||||.+..+... .| ....
T Consensus 439 -----~i~~~---------------~~~e~~l~~l~~lv~~-----~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r 493 (1706)
T 3cmw_A 439 -----LCSQP---------------DTGEQALEICDALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR 493 (1706)
T ss_dssp -----EEECC---------------SSHHHHHHHHHHHHHH-----TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHH
T ss_pred -----EEcCC---------------CCHHHHHHHHHHHHHh-----cCCCEEEECCHHHhhccccccccccccchhHHHH
Confidence 33221 1234555555544432 14568999999988521 12 1234
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEeccCC
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEPLS 210 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~pL~ 210 (260)
++..+++.|..++++.++++|++.|.... .+.+....-..+.|.||++|.++...
T Consensus 494 ~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 494 MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 56777888877778889999999884311 11111112356889999999988653
No 26
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.31 E-value=0.0029 Score=59.02 Aligned_cols=179 Identities=9% Similarity=0.012 Sum_probs=111.0
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcC-CCCCCeEEEEEeccCchhHHHH--HHHHhccccccccCCceEEeeccc--
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLS-PTSSNVIIFVAFANPFSHYDRI--LRKLGCNLVTQRDNKRFIFFDMLM-- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~-~~~~~~Vvlvs~~~~~~hy~~~--~~KlG~nL~~~~~~g~~~fvD~l~-- 98 (260)
++|.+++|....|+.=+.|..++..+... .+.+ |+++|+..+..-...- +...|+++... .+|++..-|.-.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~--Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l-~~g~l~~~~~~~~~ 277 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNEN--VAIFSLEMSAQQLVMRMLCAEGNINAQNL-RTGKLTPEDWGKLT 277 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCC--EEEEESSSCHHHHHHHHHHHHHTCCHHHH-HTSCCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHHHHcCCCHHHH-hcCCCCHHHHHHHH
Confidence 47999999999999999999999998875 3444 9999998876544433 44678887765 345443211100
Q ss_pred ----ccC-CCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc---CCChHHHHHHHHHHHHhhcc
Q 024921 99 ----LRC-PDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA---NGGSDYVLDFLHYCHALTSE 170 (260)
Q Consensus 99 ----~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~---g~~~~~v~~fi~~l~~~~~~ 170 (260)
.+. .++-..++....+..+...++..... .+..+||||.+..+.... .....++..+++.|+.++.+
T Consensus 278 ~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~-----~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke 352 (454)
T 2r6a_A 278 MAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE-----SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE 352 (454)
T ss_dssp HHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT-----TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH-----cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 00000011122345565555554432 246699999999875210 12356778888889999888
Q ss_pred cCCeEEEEeeccCCCC------CChhHHH--HHcchhcceEEEeccCC
Q 024921 171 FDCSLITLNHEDIYSS------MERPTLI--LQMEYLADILIKAEPLS 210 (260)
Q Consensus 171 ~~~~lv~l~h~~~~~~------~e~~~l~--~~L~h~a~~~i~l~pL~ 210 (260)
.++++|+++|..-..+ ....++- ..+.+.||.++-+..-.
T Consensus 353 ~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 353 LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 8999999999432111 1111121 15788999999997643
No 27
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.30 E-value=0.0025 Score=57.27 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=107.0
Q ss_pred hhHHhhhC--CCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccc
Q 024921 7 NLLDRALG--LDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVT 84 (260)
Q Consensus 7 ~~l~~~l~--~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~ 84 (260)
+-||.+|| +.... |+| +++|....++-=+-|.++++..+.+.+...+|+++++.+++.- .-++++|+|+..
T Consensus 12 ~~LD~~LGg~~~GGl----~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~--~ra~~lGvd~d~ 84 (333)
T 3io5_A 12 PMMNIALSGEITGGM----QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP--AYLRSMGVDPER 84 (333)
T ss_dssp HHHHHHHHSSTTCCB----CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH--HHHHHTTCCGGG
T ss_pred HHHHHHhCCCCCCCC----cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH--HHHHHhCCCHHH
Confidence 45788886 11222 357 8999999999999999999999887532345999999988753 348999999865
Q ss_pred cccCCceEEeecccccCCCCCCCCCCCcchHHH-HHHHHHHhcCCCCCCCCcEEEEEeChhHHHH--H----cC------
Q 024921 85 QRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLL-YEKILKTICGLPGDKKDYVTIMIDDISLVEV--A----AN------ 151 (260)
Q Consensus 85 ~~~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L-~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~--~----~g------ 151 (260)
. .+. . +....++ +. +.+.++.... ....+||||.+..|.. - .|
T Consensus 85 l------lv~---~------------~~~~E~~~l~-i~~~l~~i~~--~~~~lvVIDSI~aL~~~~eieg~~gd~~~gs 140 (333)
T 3io5_A 85 V------IHT---P------------VQSLEQLRID-MVNQLDAIER--GEKVVVFIDSLGNLASKKETEDALNEKVVSD 140 (333)
T ss_dssp E------EEE---E------------CSBHHHHHHH-HHHHHHTCCT--TCCEEEEEECSTTCBCC--------------
T ss_pred e------EEE---c------------CCCHHHHHHH-HHHHHHHhhc--cCceEEEEecccccccchhccCccccccccH
Confidence 2 221 1 1123444 33 2233322221 3578999999999852 0 11
Q ss_pred -CChHHHHHHHHHHHHhhcccCCeEEEEeeccCC----CCCChhHHHHHcchhcceEEEecc---CCCcCccceeEEEE
Q 024921 152 -GGSDYVLDFLHYCHALTSEFDCSLITLNHEDIY----SSMERPTLILQMEYLADILIKAEP---LSTGLATDVHGQLT 222 (260)
Q Consensus 152 -~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~----~~~e~~~l~~~L~h~a~~~i~l~p---L~TG~a~DVtG~L~ 222 (260)
...+++..+++.|..++++.++++|+..|.-.. .+.+. .=-+.| |.|.+.|.+|- +..| +++.|.-+
T Consensus 141 v~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k~G~~fg~p~~-~GG~~l-~~ss~Rl~lrk~~~ik~~--~~~~G~~~ 215 (333)
T 3io5_A 141 MTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMFSKTVM-GGGTGP-MYSADTVFIIGKRQIKDG--SDLQGYQF 215 (333)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC----------------CCG-GGGSSEEEEEEEC------------CEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEECCeeecCcccCCCCC-CCccee-eeeeEEEEEEeccccccC--CccEEeEE
Confidence 223445677777777788899999998885321 11111 113346 88988887754 5566 68899664
No 28
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.27 E-value=0.00052 Score=73.56 Aligned_cols=166 Identities=15% Similarity=0.104 Sum_probs=114.8
Q ss_pred hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921 8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD 87 (260)
Q Consensus 8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~ 87 (260)
-||..||+- ..++|++++|....++.=+.|..++...+.+.+.+ |+++++..+..-.. ++++|+++..
T Consensus 719 eLD~lLg~G-----Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~--VlyiS~Ees~~ql~--A~~lGvd~~~--- 786 (1706)
T 3cmw_A 719 SLDIALGAG-----GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDPIY--ARKLGVDIDN--- 786 (1706)
T ss_dssp HHHHHTSSS-----SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--EEEECTTSCCCHHH--HHHTTCCGGG---
T ss_pred HHHHHhccC-----CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC--eEEEeccchHHHHH--HHHcCCChhh---
Confidence 367777521 12579999999999999999999999998876655 99999999887653 8899999754
Q ss_pred CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH-H-----cCC-----ChHH
Q 024921 88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV-A-----ANG-----GSDY 156 (260)
Q Consensus 88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~-~-----~g~-----~~~~ 156 (260)
+.+.|- ..+..+...++..+... ...+||||.+..+.. . .|. ...+
T Consensus 787 ---L~i~~~---------------~~leei~~~l~~lv~~~-----~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~re 843 (1706)
T 3cmw_A 787 ---LLCSQP---------------DTGEQALEICDALARSG-----AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM 843 (1706)
T ss_dssp ---CEEECC---------------SSHHHHHHHHHHHHHHT-----CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHH
T ss_pred ---eEEecC---------------CcHHHHHHHHHHHHHcc-----CCCEEEEechhhhccccccccccCccchhHHHHH
Confidence 333331 13456666666544332 456899999998851 1 111 1345
Q ss_pred HHHHHHHHHHhhcccCCeEEEEeeccCC-----CCCChhHHHHHcchhcceEEEecc
Q 024921 157 VLDFLHYCHALTSEFDCSLITLNHEDIY-----SSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 157 v~~fi~~l~~~~~~~~~~lv~l~h~~~~-----~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
+..+++.|..++.+.++++|+++|..-. .+.+.......+.|.||+++.++.
T Consensus 844 is~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 844 MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 900 (1706)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEe
Confidence 6777888877788888999988883211 111112235579999999999963
No 29
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.20 E-value=0.0032 Score=59.39 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=117.1
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHH--HHHHHhccccc--ccc-----------
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDR--ILRKLGCNLVT--QRD----------- 87 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~--~~~----------- 87 (260)
++|++++|....++.=+.|..++..+...+ +.+ |+++|+..+...... .+...|+++.. ..+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~--vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKK--VGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCC--EEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCc--EEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 479999999999999899999999998876 545 999999988765443 24556887654 111
Q ss_pred -------CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC--CChHHHH
Q 024921 88 -------NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN--GGSDYVL 158 (260)
Q Consensus 88 -------~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g--~~~~~v~ 158 (260)
+.++.+.|.. .+..+..+...++....+. +..+||||.+..+..... ....++.
T Consensus 318 ~~~~~~~~~~l~i~~~~------------~~~~~~~i~~~i~~~~~~~-----~~~lvVID~l~~l~~~~~~~~~~~~~~ 380 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSF------------AEAETDRLLAKLAYMRSGL-----GCDVIILDHISIVVSASGESDERKMID 380 (503)
T ss_dssp HHHHHHTTTCEEEECCC---------------CHHHHHHHHHHHHHTT-----CCSEEEEECTTCCCSCCSCCCHHHHHH
T ss_pred HHHHHhccCCEEEECCC------------CCCCHHHHHHHHHHHHHhc-----CCCEEEEccchhcCCCCCCCCHHHHHH
Confidence 1223222211 1234667777777665532 356899999997742100 1134667
Q ss_pred HHHHHHHHhhcccCCeEEEEeeccCCC-------CCC--hhHH--HHHcchhcceEEEeccCCCcCccceeEEEEEEecC
Q 024921 159 DFLHYCHALTSEFDCSLITLNHEDIYS-------SME--RPTL--ILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKG 227 (260)
Q Consensus 159 ~fi~~l~~~~~~~~~~lv~l~h~~~~~-------~~e--~~~l--~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~ 227 (260)
.+++.|+.++.+.++++++++|..-.. +.. ...+ ...+.+.||.+|.+..-..+-... .-.|.|.+..
T Consensus 381 ~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~~~~-~~~l~v~K~R 459 (503)
T 1q57_A 381 NLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPN-LVLVRILKCR 459 (503)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSSCTT-EEEEEEEEET
T ss_pred HHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCCCCC-eEEEEEEecc
Confidence 888899999999999999999854211 000 0011 245788999999998765431111 2355565443
No 30
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.10 E-value=0.0039 Score=58.00 Aligned_cols=179 Identities=11% Similarity=0.036 Sum_probs=109.8
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHH--HHHHhccccccccCCceEEee-----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRI--LRKLGCNLVTQRDNKRFIFFD----- 95 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~--~~KlG~nL~~~~~~g~~~fvD----- 95 (260)
++|.+++|....++.=+.|..++..++... +.+ |+++|+..+..-...- +...|+++.... +|++.--|
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~--vl~~slE~~~~~l~~R~~~~~~~i~~~~l~-~g~l~~~~~~~~~ 274 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVG--VGIYSLEMPAAQLTLRMMCSEARIDMNRVR-LGQLTDRDFSRLV 274 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCC--EEEEESSSCHHHHHHHHHHHHTTCCTTTCC-GGGCCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe--EEEEECCCCHHHHHHHHHHHHcCCCHHHHh-CCCCCHHHHHHHH
Confidence 479999999999999999999999988753 444 9999999877644432 456788876653 23331000
Q ss_pred -cccccC-CCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc-C----CChHHHHHHHHHHHHhh
Q 024921 96 -MLMLRC-PDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA-N----GGSDYVLDFLHYCHALT 168 (260)
Q Consensus 96 -~l~~~~-~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~-g----~~~~~v~~fi~~l~~~~ 168 (260)
....+. .++-..+.....+..+...++....+. +..+||||.+..+.... + ....++..+++.|+.++
T Consensus 275 ~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~-----~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lA 349 (444)
T 2q6t_A 275 DVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQN-----QVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALA 349 (444)
T ss_dssp HHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHS-----CCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHc-----CCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 000000 000000011223556666665544321 35689999999885210 1 11346778888999999
Q ss_pred cccCCeEEEEeeccCC--C--C--CChhHH--HHHcchhcceEEEeccCC
Q 024921 169 SEFDCSLITLNHEDIY--S--S--MERPTL--ILQMEYLADILIKAEPLS 210 (260)
Q Consensus 169 ~~~~~~lv~l~h~~~~--~--~--~e~~~l--~~~L~h~a~~~i~l~pL~ 210 (260)
.+.++.+|+++|..-. . + ....++ ...+.+.||+++-+..-.
T Consensus 350 ke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~ 399 (444)
T 2q6t_A 350 RELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDE 399 (444)
T ss_dssp HHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGG
T ss_pred HHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEeccc
Confidence 8999999999984311 0 1 111111 125789999999997654
No 31
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.00 E-value=0.0069 Score=52.42 Aligned_cols=144 Identities=13% Similarity=0.212 Sum_probs=88.8
Q ss_pred CCCCcEEEEeecCCCCccHHHHHHHHHhcCCC--------CCCeEEEEEeccCchhHHHHHHHHhccccccccC---Cce
Q 024921 23 PLSGRVVLIEDCVETSGSFVLHQLVKRSLSPT--------SSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDN---KRF 91 (260)
Q Consensus 23 ~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~--------~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~---g~~ 91 (260)
.++|++++|....|+-=+.|+.++......+. ...+|+++++.++......-++++|.++...... +++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 45899999999999999999999998655541 1234999999988876665667788776432111 233
Q ss_pred EEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhccc
Q 024921 92 IFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEF 171 (260)
Q Consensus 92 ~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~ 171 (260)
.+.+....... .-+.. ..+.+...+. ++.+||||.|..+...-.....++..+++.++.++.+.
T Consensus 107 ~l~~~~~~~~~------~ls~g---~~~~i~~l~~-------~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 107 LIQPLIGSLPN------IMAPE---WFDGLKRAAE-------GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp EECCCTTSCCC------TTSHH---HHHHHHHHHT-------TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCCcc------cCCHH---HHHHHHHhcC-------CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 33332211000 00111 1233333332 35689999999875211112345567777777777677
Q ss_pred CCeEEEEeecc
Q 024921 172 DCSLITLNHED 182 (260)
Q Consensus 172 ~~~lv~l~h~~ 182 (260)
++++|++.|..
T Consensus 171 g~tvi~i~H~~ 181 (279)
T 1nlf_A 171 GCSIVFLHHAS 181 (279)
T ss_dssp CCEEEEEEEC-
T ss_pred CCEEEEEecCC
Confidence 88999998854
No 32
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.77 E-value=0.0075 Score=56.33 Aligned_cols=180 Identities=16% Similarity=0.072 Sum_probs=113.2
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHH--HHHHhccccccccCCc--eEEeeccc-
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRI--LRKLGCNLVTQRDNKR--FIFFDMLM- 98 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~--~~KlG~nL~~~~~~g~--~~fvD~l~- 98 (260)
++|.+++|....++.=+.|..++..++..++. +|+++|+..+..-...- +...|+++.... +|+ +..-|...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~--~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~-~g~~~l~~~~~~~l 271 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDD--VVNLHSLEMGKKENIKRLIVTAGSINAQKIK-AARRDFASEDWGKL 271 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTC--EEEEECSSSCTTHHHHHHHHHHSCCCHHHHH-HTGGGTCCSCHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCC--EEEEEECCCCHHHHHHHHHHHHcCCCHHHHh-cccCCCCHHHHHHH
Confidence 47999999999999999999999998887644 59999999887655543 345688876653 344 33222110
Q ss_pred -----cc-CCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC---CChHHHHHHHHHHHHhhc
Q 024921 99 -----LR-CPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN---GGSDYVLDFLHYCHALTS 169 (260)
Q Consensus 99 -----~~-~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g---~~~~~v~~fi~~l~~~~~ 169 (260)
.+ -.++--.+.....+..+...++....+.. -++++||||.+..+.. .+ ....++..+.+.|+.++.
T Consensus 272 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~---~~~~lIVID~Lq~~~~-~~~~~~r~~~i~~i~~~Lk~lAk 347 (444)
T 3bgw_A 272 SMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNP---GKRVIVMIDYLQLLEP-AKANDSRTNQISQISRDLKKMAR 347 (444)
T ss_dssp HHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSC---SSCEEEEEECSTTSBC-SCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhC---CCCeEEEEecHHhccC-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 00000001112345666666666544321 1345999999998752 12 123467888899999999
Q ss_pred ccCCeEEEEeeccCC----CC--CChhHH--HHHcchhcceEEEeccCC
Q 024921 170 EFDCSLITLNHEDIY----SS--MERPTL--ILQMEYLADILIKAEPLS 210 (260)
Q Consensus 170 ~~~~~lv~l~h~~~~----~~--~e~~~l--~~~L~h~a~~~i~l~pL~ 210 (260)
+.++.+++++|..-. .+ ....++ .-.+.+.||+++-+..-.
T Consensus 348 e~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~ 396 (444)
T 3bgw_A 348 ELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDD 396 (444)
T ss_dssp HHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGG
T ss_pred HhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccc
Confidence 999999999984310 01 000111 125889999999998654
No 33
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.33 E-value=0.012 Score=53.07 Aligned_cols=174 Identities=13% Similarity=0.048 Sum_probs=107.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHH--HHHHHhccccccccCCceEEeecc----
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDR--ILRKLGCNLVTQRDNKRFIFFDML---- 97 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~--~~~KlG~nL~~~~~~g~~~fvD~l---- 97 (260)
++|.+++|....++.=+.|..++..++...+. +|+++|+.-+..-... .+...|+++..+.. |++.--|.-
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~--~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~-g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDR--GVAVFSLEMSAEQLALRALSDLTSINMHDLES-GRLDDDQWENLAK 120 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--EEEEEESSSCHHHHHHHHHHHHHCCCHHHHHH-TCCCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhc-CCCCHHHHHHHHH
Confidence 47999999999999999999999988877544 4999999877654322 22345788776543 332110000
Q ss_pred -----c--ccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc--CCChHHHHHHHHHHHHhh
Q 024921 98 -----M--LRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA--NGGSDYVLDFLHYCHALT 168 (260)
Q Consensus 98 -----~--~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~--g~~~~~v~~fi~~l~~~~ 168 (260)
. .++.. +. ....+..+...++...... ++..+||||-+..+.... .....++..+.+.|+.++
T Consensus 121 a~~~l~~~~l~I~-d~---~~~si~~i~~~ir~l~~~~----gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lA 192 (338)
T 4a1f_A 121 CFDHLSQKKLFFY-DK---SYVRIEQIRLQLRKLKSQH----KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLA 192 (338)
T ss_dssp HHHHHHHSCEEEE-CC---TTCCHHHHHHHHHHHHHHC----TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEe-CC---CCCcHHHHHHHHHHHHHhc----CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 0 00100 01 1123556666665543322 146799999998774210 112346788888999999
Q ss_pred cccCCeEEEEeeccCC----CC--CChhHH--HHHcchhcceEEEecc
Q 024921 169 SEFDCSLITLNHEDIY----SS--MERPTL--ILQMEYLADILIKAEP 208 (260)
Q Consensus 169 ~~~~~~lv~l~h~~~~----~~--~e~~~l--~~~L~h~a~~~i~l~p 208 (260)
...++.|++++|..-. .+ ....+| .-.+.+.||+++-+..
T Consensus 193 kel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R 240 (338)
T 4a1f_A 193 RELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYR 240 (338)
T ss_dssp HHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEEC
T ss_pred HHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEec
Confidence 9999999999994311 00 111111 3457888999998754
No 34
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.09 E-value=0.16 Score=48.03 Aligned_cols=206 Identities=13% Similarity=0.133 Sum_probs=118.7
Q ss_pred CCCcEEEEeecCCCCccHHHHHHH-HHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLV-KRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCP 102 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l-~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~ 102 (260)
++|++++|....|+.=+=|+.+|+ .-.+..+.+ .+++++..........+++.|+.+......+++.+++....
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g--~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~--- 111 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP--GVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD--- 111 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC--EEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC---
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC--EEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc---
Confidence 479999999999999999999984 555542444 88899887666666777889998887665566766654320
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCCh---HHHHHHHHHHHHhhcccCCeEEEEe
Q 024921 103 DVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGS---DYVLDFLHYCHALTSEFDCSLITLN 179 (260)
Q Consensus 103 ~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~---~~v~~fi~~l~~~~~~~~~~lv~l~ 179 (260)
.....--..-.+..+.+.+...+... .+-.|+||.+..++...+.++ .++.++++.++ +.++++|+..
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g-----~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~----~~g~tvl~it 182 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKY-----RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK----QIGATTVMTT 182 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHH-----TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH----HHTCEEEEEE
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHc-----CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH----HCCCEEEEEe
Confidence 00000001223455555555555421 345899999988753223332 23344444442 2456888888
Q ss_pred eccCCCCCChhHHHHH-cchhcceEEEeccCC-CcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEecCcEEEee
Q 024921 180 HEDIYSSMERPTLILQ-MEYLADILIKAEPLS-TGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFY 255 (260)
Q Consensus 180 h~~~~~~~e~~~l~~~-L~h~a~~~i~l~pL~-TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~D~~Vk~F~ 255 (260)
|.-...... .... ..+.||-++-++--. .|. ....+.+.+-.... .....+.|.+.+.++++|.
T Consensus 183 H~~~~~~~~---~~~~i~~~laD~vi~L~~~~~~G~---~~r~l~~~k~r~~~------~~~~~~~~~i~~~gi~v~p 248 (525)
T 1tf7_A 183 ERIEEYGPI---ARYGVEEFVSDNVVILRNVLEGER---RRRTLEILKLRGTS------HMKGEYPFTITDHGINIFP 248 (525)
T ss_dssp ECSSSSSCS---STTSCHHHHCSEEEEEEEECSTTC---CEEEEEEEEETTSC------CCCSEEEEEEETTEEEECC
T ss_pred cCCCCcccc---ccccceeeeeeEEEEEEEEccCCc---eeEEEEEEECCCCC------CCCceEEEEEcCCCEEEEe
Confidence 864321100 0011 235588888876422 243 33455554321110 0123466777777777764
No 35
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.94 E-value=2.6 Score=36.04 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=95.5
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCC-CCCCeEEEEEeccCchhHHHHHHHH-----hccccc---cc--------
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSP-TSSNVIIFVAFANPFSHYDRILRKL-----GCNLVT---QR-------- 86 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~-~~~~~Vvlvs~~~~~~hy~~~~~Kl-----G~nL~~---~~-------- 86 (260)
++|.+++|....|+.=+.|+.++....... +.+ |++++...+... ..+|+ ++++.. ..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~--v~~~~~e~~~~~---~~~r~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKK--VGLAMLEESVEE---TAEDLIGLHNRVRLRQSDSLKREIIENGK 107 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCC--EEEEESSSCHHH---HHHHHHHHHTTCCGGGCHHHHHHHHHHTH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCe--EEEEeCcCCHHH---HHHHHHHHHcCCChhhccccccCCCCHHH
Confidence 579999999999999999999998877654 334 999988755432 22332 333321 00
Q ss_pred ---------cCCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CCh-H
Q 024921 87 ---------DNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGS-D 155 (260)
Q Consensus 87 ---------~~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~-~ 155 (260)
+...+.+.|. +......+|...+. +.... .++.+||||.|..++.... ... .
T Consensus 108 ~~~~~~~~l~~~~l~i~~~------------~~~~~~~~l~~~~~-a~~~~----~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 108 FDQWFDELFGNDTFHLYDS------------FAEAETDRLLAKLA-YMRSG----LGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp HHHHHHHHHSSSCEEEECC------------CCSCCHHHHHHHHH-HHHHT----TCCSEEEEEEEC-----------CH
T ss_pred HHHHHHHHhccCCEEEECC------------CCCCCHHHHHHHHH-HHHHh----cCCCEEEEcCccccCCCCCCCCHHH
Confidence 0011211111 01233455655555 22211 2466999999999863210 222 4
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEeeccC-CC-----CCChh-----HHHHHcchhcceEEEeccCCCcCccceeEEEEEE
Q 024921 156 YVLDFLHYCHALTSEFDCSLITLNHEDI-YS-----SMERP-----TLILQMEYLADILIKAEPLSTGLATDVHGQLTVL 224 (260)
Q Consensus 156 ~v~~fi~~l~~~~~~~~~~lv~l~h~~~-~~-----~~e~~-----~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~ 224 (260)
++..+++.++.++.+.++++|+++|..- .. +.... +=...+.+.||.++-+..-.-.. ..-...|.|.
T Consensus 171 ~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~~-~~~~~~l~i~ 249 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGD-MPNLVLVRIL 249 (296)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcccC-CCCeEEEEEE
Confidence 5566777778777777889999999741 10 00000 00125678899999986532110 0123466665
Q ss_pred ecC
Q 024921 225 NKG 227 (260)
Q Consensus 225 ~~~ 227 (260)
+..
T Consensus 250 K~R 252 (296)
T 1cr0_A 250 KCR 252 (296)
T ss_dssp EET
T ss_pred ccc
Confidence 543
No 36
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=80.56 E-value=4.8 Score=33.66 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=92.7
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCCC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDV 104 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~ 104 (260)
+|.+++++...|+.=+-++.+++.++...+.+ |+++.+.-+......+++++|+..... . .
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~k--Vli~~~~~d~r~~~~i~srlG~~~~~~------~--------~--- 71 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVK--YLVFKPKIDTRSIRNIQSRTGTSLPSV------E--------V--- 71 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEEECCCGGGCSSCCCCCCCSSCCE------E--------E---
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCE--EEEEEeccCchHHHHHHHhcCCCcccc------c--------c---
Confidence 58999999999999999999999999877666 999987765322223455555443221 0 0
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCC
Q 024921 105 DEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIY 184 (260)
Q Consensus 105 ~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~ 184 (260)
.....+++.+.+.+.. ....+||||.+..| + .++.+++..+.. .+..||+.-+....
T Consensus 72 -------~~~~~i~~~i~~~~~~-----~~~dvViIDEaQ~l------~-~~~ve~l~~L~~----~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 72 -------ESAPEILNYIMSNSFN-----DETKVIGIDEVQFF------D-DRICEVANILAE----NGFVVIISGLDKNF 128 (223)
T ss_dssp -------SSTHHHHHHHHSTTSC-----TTCCEEEECSGGGS------C-THHHHHHHHHHH----TTCEEEEECCSBCT
T ss_pred -------CCHHHHHHHHHHHhhC-----CCCCEEEEecCccC------c-HHHHHHHHHHHh----CCCeEEEEeccccc
Confidence 0124455555543321 24569999999753 2 245566655432 23445554443222
Q ss_pred CCCChhHHHHHcchhcceEEEeccCCC--cCccceeEEEEEEe
Q 024921 185 SSMERPTLILQMEYLADILIKAEPLST--GLATDVHGQLTVLN 225 (260)
Q Consensus 185 ~~~e~~~l~~~L~h~a~~~i~l~pL~T--G~a~DVtG~L~v~~ 225 (260)
..+-.. -...|...||.+..++..-. |+ ..+=..|+..
T Consensus 129 ~~~~F~-~~~~Ll~lAD~V~el~~ic~~Cg~--~a~~~~r~~~ 168 (223)
T 2b8t_A 129 KGEPFG-PIAKLFTYADKITKLTAICNECGA--EATHSLRKID 168 (223)
T ss_dssp TSSBCT-THHHHHHHCSEEEECCEECTTTCS--EECEEEEEET
T ss_pred cCCcCC-CcHHHHHHhheEeecceeccccCC--ccceeEEecC
Confidence 111011 12456669999999998876 65 3444455544
No 37
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.67 E-value=32 Score=29.72 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=56.4
Q ss_pred EEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCc---hhHHHHHHHHhccccccccCCceEEeecccccCCCC
Q 024921 28 VVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPF---SHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDV 104 (260)
Q Consensus 28 l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~---~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~~ 104 (260)
.++|....|+.=+-++..+....-... +..++.+...... ..|..+++.+|..... .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-----------------~-- 105 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPR-----------------R-- 105 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-----------------S--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-----------------C--
Confidence 889999999999999988887654431 2347777755433 5666666665432110 0
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHH
Q 024921 105 DEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLV 146 (260)
Q Consensus 105 ~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~L 146 (260)
......+++.+...+... .++.+||||+++.+
T Consensus 106 ------~~~~~~~~~~l~~~l~~~----~~~~vlilDE~~~l 137 (389)
T 1fnn_A 106 ------GLSRDEFLALLVEHLRER----DLYMFLVLDDAFNL 137 (389)
T ss_dssp ------CCCHHHHHHHHHHHHHHT----TCCEEEEEETGGGS
T ss_pred ------CCCHHHHHHHHHHHHhhc----CCeEEEEEECcccc
Confidence 112344555555555432 25789999999876
No 38
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.36 E-value=5.4 Score=35.60 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeecccccCCC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPD 103 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~~~ 103 (260)
|+++.++|....|+.=+.|..++... .+.+ |+++++.-... + +...
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~--VlyIs~~~eE~----------v--------------~~~~----- 166 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA---LGGK--DKYATVRFGEP----------L--------------SGYN----- 166 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH---HHTT--SCCEEEEBSCS----------S--------------TTCB-----
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh---CCCC--EEEEEecchhh----------h--------------hhhh-----
Confidence 46788999999999999999999876 2334 78888721111 1 1110
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHc------CCChHHHHHHHHHHHHhhcccCCeEEE
Q 024921 104 VDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAA------NGGSDYVLDFLHYCHALTSEFDCSLIT 177 (260)
Q Consensus 104 ~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~------g~~~~~v~~fi~~l~~~~~~~~~~lv~ 177 (260)
..+..+...+.+.+.+ .+ +||||++..+.... |.....+..+++.|..++.+.++.+++
T Consensus 167 --------~~le~~l~~i~~~l~~------~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIl 231 (331)
T 2vhj_A 167 --------TDFNVFVDDIARAMLQ------HR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIA 231 (331)
T ss_dssp --------CCHHHHHHHHHHHHHH------CS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred --------cCHHHHHHHHHHHHhh------CC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 1234455555555543 23 89999999884221 111355678888887776666666544
Q ss_pred Eee
Q 024921 178 LNH 180 (260)
Q Consensus 178 l~h 180 (260)
...
T Consensus 232 ttn 234 (331)
T 2vhj_A 232 SLN 234 (331)
T ss_dssp ECC
T ss_pred EeC
Confidence 433
No 39
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.53 E-value=35 Score=29.27 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCC-CCeEEEEEeccCc---hhHHHHHHHHhccccccccCCceEEeeccccc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTS-SNVIIFVAFANPF---SHYDRILRKLGCNLVTQRDNKRFIFFDMLMLR 100 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~-~~~Vvlvs~~~~~---~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~~~ 100 (260)
.+..++|....|+.=+-|+..+....-.... +..++.+...+.. ..+..++..+|....
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----------------- 106 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----------------- 106 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-----------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-----------------
Confidence 3568889998899999999988876543211 2347777754322 223333222221100
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHH
Q 024921 101 CPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV 148 (260)
Q Consensus 101 ~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~ 148 (260)
. .......+++.+...+... ..+.+||||+++.+..
T Consensus 107 -----~---~~~~~~~~~~~l~~~l~~~----~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 107 -----F---TGLSIAELYRRLVKAVRDY----GSQVVIVLDEIDAFVK 142 (386)
T ss_dssp -----S---SSCCHHHHHHHHHHHHHTC----CSCEEEEEETHHHHHH
T ss_pred -----C---CCCCHHHHHHHHHHHHhcc----CCeEEEEEcChhhhhc
Confidence 0 0112445566666666532 2478999999998874
No 40
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.93 E-value=41 Score=27.40 Aligned_cols=157 Identities=9% Similarity=0.109 Sum_probs=88.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhH--HHHHHHHhccccccccCCceEEeecccccC
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHY--DRILRKLGCNLVTQRDNKRFIFFDMLMLRC 101 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy--~~~~~KlG~nL~~~~~~g~~~fvD~l~~~~ 101 (260)
..|.+++.+.. |..=+-.-.-+.-.++..+.+ |+++.|..+...| ....+++++.+..... +++ .
T Consensus 27 ~~g~i~v~tG~-GkGKTTaA~GlalRA~g~G~r--V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--------gf~--~ 93 (196)
T 1g5t_A 27 ERGIIIVFTGN-GKGKTTAAFGTAARAVGHGKN--VGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--------GFT--W 93 (196)
T ss_dssp CCCCEEEEESS-SSCHHHHHHHHHHHHHHTTCC--EEEEESSCCSSCCHHHHHHGGGTCEEEECCT--------TCC--C
T ss_pred cCceEEEECCC-CCCHHHHHHHHHHHHHHCCCe--EEEEEeeCCCCCccHHHHHHhCCcEEEEccc--------ccc--c
Confidence 46788888886 566666666666666666655 9999999853111 2355677766665432 111 0
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHHHHHHHHHHHhhcccCCeEEEEee
Q 024921 102 PDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYVLDFLHYCHALTSEFDCSLITLNH 180 (260)
Q Consensus 102 ~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v~~fi~~l~~~~~~~~~~lv~l~h 180 (260)
.. +.........+..++.+++.+.. ...-+||+|.+...+. +| ++..++.+++..- -.+..||+ ..
T Consensus 94 ~~-~~~~~~~~~a~~~l~~a~~~l~~-----~~yDlvILDEi~~al~-~g~l~~~ev~~~l~~R-----p~~~~vIl-TG 160 (196)
T 1g5t_A 94 ET-QNREADTAACMAVWQHGKRMLAD-----PLLDMVVLDELTYMVA-YDYLPLEEVISALNAR-----PGHQTVII-TG 160 (196)
T ss_dssp CG-GGHHHHHHHHHHHHHHHHHHTTC-----TTCSEEEEETHHHHHH-TTSSCHHHHHHHHHTS-----CTTCEEEE-EC
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEeCCCcccc-CCCCCHHHHHHHHHhC-----cCCCEEEE-EC
Confidence 00 00000011123344445554432 2456999999999874 34 5677777766321 11123433 33
Q ss_pred ccCCCCCChhHHHHHcchhcceEEEeccCCCcCcc
Q 024921 181 EDIYSSMERPTLILQMEYLADILIKAEPLSTGLAT 215 (260)
Q Consensus 181 ~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~ 215 (260)
..++. .|...||+|=++++...-+-+
T Consensus 161 r~ap~---------~l~e~AD~VTem~~vkH~~~~ 186 (196)
T 1g5t_A 161 RGCHR---------DILDLADTVSELRPVKHAFDA 186 (196)
T ss_dssp SSCCH---------HHHHHCSEEEECCCSCCC---
T ss_pred CCCcH---------HHHHhCcceeeecceeCchhc
Confidence 33322 267789999999988877654
No 41
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein structural and functiona analyses; 2.30A {Pyrococcus horikoshii}
Probab=64.14 E-value=60 Score=26.73 Aligned_cols=165 Identities=11% Similarity=0.092 Sum_probs=106.6
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhccccccccCCceEEeeccc-ccCCC
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLM-LRCPD 103 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l~-~~~~~ 103 (260)
.|..+||..+...++..+++.++. ..+.+ |++.-+..+..=|+.-++.+|++..-. ++..+|=..- .-.++
T Consensus 14 ~GEtVLVEY~S~~~~e~~~~~ii~---~~~~p--ilI~DilDtl~i~~~~Lkl~G~d~~~~---~~i~VIKiGG~~~~Gn 85 (207)
T 2ekd_A 14 VGETVLVEYSGTSRAELLLYYIVN---NSKLP--IVVDDILDTYYEFYTRLKVAGFDVAPL---ENVQVIKMGGTKDIGR 85 (207)
T ss_dssp TTCEEEEEECTTSCTHHHHHHHHH---HCSSC--BEEEEETTHHHHHHHHHHHTTCCCHHH---HTSEEEEESCSCCCSE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHH---hCCCc--EEEEeccccHHHHHHHHHhcCCCcccc---cceeEEEecceeeeee
Confidence 599999999999999999999988 33334 999999999999999999999998633 2333432221 11111
Q ss_pred C-CC-CCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcc-cCCeEEEEee
Q 024921 104 V-DE-GKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSE-FDCSLITLNH 180 (260)
Q Consensus 104 ~-~~-~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~-~~~~lv~l~h 180 (260)
. .+ +-.....+.+-|..+.+.+ . ..+.+.|+=+++-|+.. +.+ .+...|+...+...-+ .+.++..+..
T Consensus 86 Vv~ri~i~~d~i~~~~Y~~~~~~~---~---~~~~i~ivlG~ekl~~~-~~~-~~~~~~i~~i~~~lg~~~r~a~yFIN~ 157 (207)
T 2ekd_A 86 VIGRLNISKYVISEQEYMEIVSQL---K---DYPVINPVLGLHKLILL-GNT-FENINVVKMVSNYVGREERIAFYFVNR 157 (207)
T ss_dssp EEEEECCBTTBCCHHHHHHHHTTC---C---SCSEEEEEECHHHHHHH-SCH-HHHHHHHHHHHHHTTCTTEEEEEEEEH
T ss_pred EEEEEeCCCchHHHHHHHHHHHHH---c---cCCeEEEEEcHHHHhHh-ccc-HHHHHHHHHHHHhcCCCCeEEEEEEcH
Confidence 0 00 0011133445555433333 2 25688888899999854 443 5778888888877433 3334555444
Q ss_pred ccCCCCCChhHHHHHcchhcceEEEec
Q 024921 181 EDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 181 ~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
+-. .+ .....+..|...|..|+++.
T Consensus 158 dvl-~~-~~p~~l~~LEeiaT~Vi~i~ 182 (207)
T 2ekd_A 158 NVI-EK-HSSPILDLLEEVVTSILEIT 182 (207)
T ss_dssp HHH-HH-HCHHHHHHHHHHSSEEEEEE
T ss_pred HHh-hh-cChhHHHHHHHhCcEEEEEE
Confidence 322 10 11257888999999999998
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=63.25 E-value=59 Score=27.84 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=58.8
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccC---chhHHHHHHHHhccccccccCCceEEeecc
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANP---FSHYDRILRKLGCNLVTQRDNKRFIFFDML 97 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~---~~hy~~~~~KlG~nL~~~~~~g~~~fvD~l 97 (260)
.+..++|....|+.=+-++..+....... +.+..++.+..... ...+..++..+|.....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~------------- 109 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPF------------- 109 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCS-------------
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCC-------------
Confidence 34678888888999999988888765432 11334666765543 34566677766542110
Q ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHH
Q 024921 98 MLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVE 147 (260)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll 147 (260)
. ......+++.+...+... ..+.+||||+++.+.
T Consensus 110 ----~--------~~~~~~~~~~l~~~l~~~----~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 110 ----T--------GLSVGEVYERLVKRLSRL----RGIYIIVLDEIDFLP 143 (387)
T ss_dssp ----S--------CCCHHHHHHHHHHHHTTS----CSEEEEEEETTTHHH
T ss_pred ----C--------CCCHHHHHHHHHHHHhcc----CCeEEEEEccHhhhc
Confidence 0 112345666666666532 257899999999886
No 43
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=55.46 E-value=35 Score=26.19 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=35.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEP 208 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~p 208 (260)
.+.++|+|.|.. |++......+...++.+... +.++++..|+. . +...||.++.+.+
T Consensus 81 ~p~lllLDEPt~-----~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~-~-----------~~~~~d~ii~l~~ 137 (148)
T 1f2t_B 81 EISLLILDEPTP-----YLDEERRRKLITIMERYLKK-IPQVILVSHDE-E-----------LKDAADHVIRISL 137 (148)
T ss_dssp SCSEEEEESCSC-----TTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-G-----------GGGGCSEEEEEEE
T ss_pred CCCEEEEECCCc-----cCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH-H-----------HHHhCCEEEEEEc
Confidence 466999999973 45555555555555554332 45677777764 1 2345788888765
No 44
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=53.04 E-value=18 Score=30.04 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=37.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....++..++.++.+.+.++|+..|+- .. ...||-++-++
T Consensus 163 ~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~--------~~----~~~~d~i~~l~ 219 (235)
T 3tif_A 163 NPPIILADQPTW-----ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--------NV----ARFGERIIYLK 219 (235)
T ss_dssp CCSEEEEESTTT-----TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH--------HH----HTTSSEEEEEE
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH--------HH----HHhCCEEEEEE
Confidence 577999999983 55655555666666666545567788887753 11 13577777664
No 45
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=49.51 E-value=49 Score=27.62 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=35.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++|+..|+-.. +...||-++-++
T Consensus 171 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~-----------~~~~~d~v~~l~ 227 (257)
T 1g6h_A 171 NPKMIVMDEPIA-----GVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDI-----------VLNYIDHLYVMF 227 (257)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCST-----------TGGGCSEEEEEE
T ss_pred CCCEEEEeCCcc-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHH-----------HHHhCCEEEEEE
Confidence 577999999983 55655555555555555433 5678887776421 334567666664
No 46
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=49.49 E-value=23 Score=30.06 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=36.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.++.+.+.++|+..|+-. + +...||-++-++
T Consensus 165 ~p~lLllDEPts-----~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~--------~---~~~~~d~v~vl~ 222 (266)
T 4g1u_C 165 TPRWLFLDEPTS-----ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN--------L---AALYADRIMLLA 222 (266)
T ss_dssp CCEEEEECCCCS-----SCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH--------H---HHHHCSEEEEEE
T ss_pred CCCEEEEeCccc-----cCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH--------H---HHHhCCEEEEEE
Confidence 678999999973 566555555555566655454457888777531 2 334466666654
No 47
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.14 E-value=55 Score=27.82 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=29.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....++..++.+..+.+.++|+..|+-
T Consensus 161 ~P~lLlLDEPts-----~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 161 EPKVLILDEPTA-----GLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp CCSEEEEECTTT-----TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred CCCEEEEECccc-----cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 578999999983 55655555555555655423366788888864
No 48
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=45.44 E-value=32 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=27.6
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++|+..|+
T Consensus 158 ~p~lllLDEPt~-----~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd 199 (224)
T 2pcj_A 158 EPILLFADEPTG-----NLDSANTKRVMDIFLKINEG-GTSIVMVTHE 199 (224)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 567999999983 45554545555555555444 5678777775
No 49
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=43.53 E-value=50 Score=28.68 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=39.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGL 213 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~ 213 (260)
.+.++|+|.|.. |+++.....++..++.+... ..++++..|+.. +...||-++.++. ..|.
T Consensus 272 ~p~~lllDEp~~-----~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~------------~~~~~d~~~~l~~-~~g~ 332 (339)
T 3qkt_A 272 EISLLILDEPTP-----YLDEERRRKLITIMERYLKK-IPQVILVSHDEE------------LKDAADHVIRISL-ENGS 332 (339)
T ss_dssp TTCEEEEECCCT-----TCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG------------GGGGCSEEEEEEE-ETTE
T ss_pred CCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH------------HHHhCCEEEEEEe-cCCc
Confidence 467999999983 55666666666666665433 346877777631 2346788887764 3354
Q ss_pred c
Q 024921 214 A 214 (260)
Q Consensus 214 a 214 (260)
+
T Consensus 333 s 333 (339)
T 3qkt_A 333 S 333 (339)
T ss_dssp E
T ss_pred c
Confidence 3
No 50
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=43.16 E-value=69 Score=26.86 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=28.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++|+..|+-
T Consensus 156 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~ 198 (266)
T 2yz2_A 156 EPDILILDEPLV-----GLDREGKTDLLRIVEKWKTL-GKTVILISHDI 198 (266)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC
T ss_pred CCCEEEEcCccc-----cCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 577999999983 55655555555555655444 56788888753
No 51
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=43.01 E-value=1.6e+02 Score=25.34 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCcEEEE--eecCCCCccHHHHHHHHHhcCC----CCCCeEEEEEeccC---chhHHHHHHHHhccccccccCCceEEee
Q 024921 25 SGRVVLI--EDCVETSGSFVLHQLVKRSLSP----TSSNVIIFVAFANP---FSHYDRILRKLGCNLVTQRDNKRFIFFD 95 (260)
Q Consensus 25 ~~~l~li--td~~~t~~sfLl~~~l~~~L~~----~~~~~Vvlvs~~~~---~~hy~~~~~KlG~nL~~~~~~g~~~fvD 95 (260)
.+..++| +...|+.=+-|+.++.+..-.. +.+..++.+..... ...+..+++.+|.....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------- 117 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV----------- 117 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC-----------
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-----------
Confidence 3568888 9988999999999888765321 11234777775432 35667777777553210
Q ss_pred cccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHH
Q 024921 96 MLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVE 147 (260)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll 147 (260)
. ......++..+.+.+... ..+.+||||++..+.
T Consensus 118 ------~--------~~~~~~~~~~l~~~l~~~----~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 118 ------R--------GAPALDILKALVDNLYVE----NHYLLVILDEFQSML 151 (412)
T ss_dssp ------T--------TCCHHHHHHHHHHHHHHH----TCEEEEEEESTHHHH
T ss_pred ------C--------CCCHHHHHHHHHHHHHhc----CCeEEEEEeCHHHHh
Confidence 0 011334555555555421 257899999999885
No 52
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=40.69 E-value=38 Score=28.49 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=34.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++|+..|+-. + +...||-++-++
T Consensus 171 ~p~lllLDEPts-----~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~--------~---~~~~~d~v~~l~ 227 (262)
T 1b0u_A 171 EPDVLLFDEPTS-----ALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG--------F---ARHVSSHVIFLH 227 (262)
T ss_dssp CCSEEEEESTTT-----TSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH--------H---HHHHCSEEEEEE
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH--------H---HHHhCCEEEEEE
Confidence 577999999983 45555545555555555434 567887777531 2 334566666654
No 53
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=39.53 E-value=57 Score=25.68 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=37.5
Q ss_pred cEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCc
Q 024921 135 YVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLA 214 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a 214 (260)
+.++|+|.|+. |++......+...++.+.. +..+|++.|... +...||.++.+.. ..|.+
T Consensus 87 ~~~llLDEp~a-----~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~------------~~~~ad~i~~v~~-~~g~s 146 (173)
T 3kta_B 87 APFYLFDEIDA-----HLDDANVKRVADLIKESSK--ESQFIVITLRDV------------MMANADKIIGVSM-RDGVS 146 (173)
T ss_dssp CSEEEEESTTT-----TCCHHHHHHHHHHHHHHTT--TSEEEEECSCHH------------HHTTCSEEEEEEE-ETTEE
T ss_pred CCEEEECCCcc-----CCCHHHHHHHHHHHHHhcc--CCEEEEEEecHH------------HHHhCCEEEEEEe-cCCEE
Confidence 46899999984 4555555666666665532 345666665431 1245888888776 44654
Q ss_pred c
Q 024921 215 T 215 (260)
Q Consensus 215 ~ 215 (260)
+
T Consensus 147 ~ 147 (173)
T 3kta_B 147 K 147 (173)
T ss_dssp E
T ss_pred E
Confidence 4
No 54
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=39.49 E-value=42 Score=28.08 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.+..+.+.++|+..|+
T Consensus 146 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 146 ECKLILLDEPTS-----ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp TCSEEEESSSST-----TSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 467999999983 4555554455555555544435678877775
No 55
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=39.46 E-value=42 Score=28.35 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++|+..|+-. + +...||-++-++
T Consensus 177 ~p~lllLDEPts-----~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~--------~---~~~~~d~v~~l~ 233 (263)
T 2olj_A 177 EPKIMLFDEPTS-----ALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG--------F---AREVGDRVLFMD 233 (263)
T ss_dssp CCSEEEEESTTT-----TSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH--------H---HHHHCSEEEEEE
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH--------H---HHHhCCEEEEEE
Confidence 567999999983 45555545555555555444 567777777521 2 334567666664
No 56
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=35.91 E-value=50 Score=27.93 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=35.3
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.+..+.+.++|+..|+- .+ +.. ||-++-++
T Consensus 174 ~p~lllLDEPts-----~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~--------~~---~~~-~d~v~~l~ 230 (271)
T 2ixe_A 174 KPRLLILDNATS-----ALDAGNQLRVQRLLYESPEWASRTVLLITQQL--------SL---AER-AHHILFLK 230 (271)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH--------HH---HTT-CSEEEEEE
T ss_pred CCCEEEEECCcc-----CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH--------HH---HHh-CCEEEEEE
Confidence 578999999983 45555545555555655443456777777752 12 233 78777764
No 57
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.91 E-value=58 Score=26.86 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=34.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++|+..|+-. + +...||-++-++
T Consensus 157 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~--------~---~~~~~d~v~~l~ 213 (240)
T 1ji0_A 157 RPKLLMMDEPSL-----GLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL--------G---ALKVAHYGYVLE 213 (240)
T ss_dssp CCSEEEEECTTT-----TCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH--------H---HHHHCSEEEEEE
T ss_pred CCCEEEEcCCcc-----cCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH--------H---HHHhCCEEEEEE
Confidence 578999999983 4555554555555555533 3557887777531 1 334567776663
No 58
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=35.53 E-value=55 Score=27.18 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++|+..|+
T Consensus 161 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd 202 (250)
T 2d2e_A 161 EPTYAVLDETDS-----GLDIDALKVVARGVNAMRG-PNFGALVITHY 202 (250)
T ss_dssp CCSEEEEECGGG-----TTCHHHHHHHHHHHHHHCS-TTCEEEEECSS
T ss_pred CCCEEEEeCCCc-----CCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 467999999983 4555555555555665533 35578888775
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=33.99 E-value=35 Score=28.37 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=35.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.+..+.+.++++..|+-. + +...||-++-++
T Consensus 144 ~p~lllLDEPts-----~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~--------~---~~~~~d~i~~l~ 201 (240)
T 2onk_A 144 QPRLLLLDEPLS-----AVDLKTKGVLMEELRFVQREFDVPILHVTHDLI--------E---AAMLADEVAVML 201 (240)
T ss_dssp CCSSBEEESTTS-----SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH--------H---HHHHCSEEEEEE
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------H---HHHhCCEEEEEE
Confidence 467899999983 556555555555555554444567888887531 1 234566666664
No 60
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=33.98 E-value=66 Score=26.92 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=34.4
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++|+..|+-. + +...||-++-++
T Consensus 164 ~p~lllLDEPts-----~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~--------~---~~~~~d~v~~l~ 220 (256)
T 1vpl_A 164 NPRLAILDEPTS-----GLDVLNAREVRKILKQASQ-EGLTILVSSHNML--------E---VEFLCDRIALIH 220 (256)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHH--------H---HTTTCSEEEEEE
T ss_pred CCCEEEEeCCcc-----ccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH--------H---HHHHCCEEEEEE
Confidence 577999999983 5565554555555555533 3557777777421 1 344567666654
No 61
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=33.73 E-value=69 Score=27.65 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCCCCCCCcEEEEeecCCCC-ccHHHHHHHHHhcCCCCCCeEEEEEecc-C----chhHHHHHHHHhc
Q 024921 19 SEPWPLSGRVVLIEDCVETS-GSFVLHQLVKRSLSPTSSNVIIFVAFAN-P----FSHYDRILRKLGC 80 (260)
Q Consensus 19 ~~p~~~~~~l~litd~~~t~-~sfLl~~~l~~~L~~~~~~~Vvlvs~~~-~----~~hy~~~~~KlG~ 80 (260)
..+.+++|++++|=.-.... ..-++.+|++.+ ++.+.+|+++-.+. + .+.|+...+++|+
T Consensus 20 ~~~~~~~g~l~iiGGgedk~~~~~i~~~~v~la--gg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~ 85 (291)
T 3en0_A 20 HMPLSSQPAILIIGGAEDKVHGREILQTFWSRS--GGNDAIIGIIPSASREPLLIGERYQTIFSDMGV 85 (291)
T ss_dssp ----CCSCCEEEECSSCCSSSCCHHHHHHHHHT--TGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCceEEEEECCCCccChHHHHHHHHHHc--CCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCC
Confidence 34566789999997754332 446788888855 33345699997654 3 2567788888998
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=32.81 E-value=54 Score=28.96 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=35.9
Q ss_pred EEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 136 VTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 136 ~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.++|+|+|+. |++......+...++.+. .+++++++.|.- .++ ..||-++.+.
T Consensus 317 ~~LlLDEpt~-----~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--------~~~----~~~d~i~~l~ 369 (415)
T 4aby_A 317 PSVVFDEVDA-----GIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--------QIA----ARAHHHYKVE 369 (415)
T ss_dssp SEEEESSTTT-----TCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--------HHH----TTCSEEEEEE
T ss_pred CEEEEECCCC-----CCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--------HHH----hhcCeEEEEE
Confidence 7999999973 566666666666676664 356788888752 132 2478777773
No 63
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=32.25 E-value=65 Score=26.87 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=33.6
Q ss_pred EEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 136 VTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 136 ~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
-++|+|.|.. |+++.....+.+.++.++.+ +.++++..|+-. + +...||-++-++
T Consensus 153 ~lllLDEPts-----~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~--------~---~~~~~d~v~~l~ 207 (249)
T 2qi9_C 153 QLLLLDEPMN-----SLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN--------H---TLRHAHRAWLLK 207 (249)
T ss_dssp CEEEESSTTT-----TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH--------H---HHHHCSEEEEEE
T ss_pred eEEEEECCcc-----cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH--------H---HHHhCCEEEEEE
Confidence 3999999983 55655555555556665444 557777777531 2 334566666654
No 64
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=31.33 E-value=59 Score=27.63 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=28.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeE--EEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSL--ITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~l--v~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....+...++.++.+ +.++ |+..|+-
T Consensus 179 ~p~lLlLDEPts-----~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~ 223 (279)
T 2ihy_A 179 QPQVLILDEPAA-----GLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI 223 (279)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG
T ss_pred CCCEEEEeCCcc-----ccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH
Confidence 567999999983 45555545555555555444 5567 8888753
No 65
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=31.11 E-value=54 Score=27.59 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=27.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |+++.....+...++.+.. .+.++|+..|+
T Consensus 182 ~p~lLlLDEPts-----~LD~~~~~~l~~~l~~l~~-~g~tviivtHd 223 (267)
T 2zu0_C 182 EPELCILDESDS-----GLDIDALKVVADGVNSLRD-GKRSFIIVTHY 223 (267)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHTTCC-SSCEEEEECSS
T ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-cCCEEEEEeeC
Confidence 467999999983 5565555556666665533 35677777775
No 66
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=30.61 E-value=73 Score=28.48 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=27.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. ++++.....++..++.+..+.+.++|+..|+
T Consensus 181 ~P~lLLlDEPTs-----~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 181 NPKVLLCDQATS-----ALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp CCSEEEEESTTT-----TSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred CCCEEEEECCCc-----cCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 577999999984 4454444444444455544556788888884
No 67
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=30.21 E-value=1.2e+02 Score=23.02 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=28.3
Q ss_pred CCcEEEEeecCCCCccHHHHHHHHHhc-CCCCCCeEEEEEec
Q 024921 25 SGRVVLIEDCVETSGSFVLHQLVKRSL-SPTSSNVIIFVAFA 65 (260)
Q Consensus 25 ~~~l~litd~~~t~~sfLl~~~l~~~L-~~~~~~~Vvlvs~~ 65 (260)
+++.++|....|+.=+.|+..+..... ..+.. |+++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--~~~~~~~ 76 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--GYFFDTK 76 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--CCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--EEEEEHH
Confidence 578899999889999999988887765 33333 6665543
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.70 E-value=74 Score=28.05 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=29.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|.. |+++.....++..++.+.. .+.++|+..|+-
T Consensus 303 ~p~~lllDEpt~-----~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~ 345 (365)
T 3qf7_A 303 RLDAFFIDEGFS-----SLDTENKEKIASVLKELER-LNKVIVFITHDR 345 (365)
T ss_dssp TCCEEEEESCCT-----TSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH
T ss_pred CCCEEEEeCCCc-----cCCHHHHHHHHHHHHHHHh-CCCEEEEEecch
Confidence 467999999973 5666666666666666643 356788887753
No 69
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=26.43 E-value=80 Score=29.63 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=27.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|+. |++......+...++.++.+.+.++|+..|+
T Consensus 403 ~p~lLlLDEPT~-----gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 403 EADLYVLDQPSS-----YLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEeCCcc-----CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 467999999984 4554444444444555544556678877775
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=25.86 E-value=1.7e+02 Score=21.41 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=34.2
Q ss_pred cEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchh-cceEEEeccCC
Q 024921 135 YVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYL-ADILIKAEPLS 210 (260)
Q Consensus 135 ~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~-a~~~i~l~pL~ 210 (260)
..+|+||+++.+-. .....+++.+... ...++.+|.....+.... +.. |-..|.++ +.+.|.+-||.
T Consensus 76 ~~~l~lDei~~l~~------~~q~~Ll~~l~~~-~~~~~~iI~~tn~~~~~~-~~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 76 GGVLYVGDIAQYSR------NIQTGITFIIGKA-ERCRVRVIASCSYAAGSD-GIS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp TSEEEEEECTTCCH------HHHHHHHHHHHHH-TTTTCEEEEEEEECTTTC---C-HHHHHHHHSSSEEEEECCCC
T ss_pred CCeEEEeChHHCCH------HHHHHHHHHHHhC-CCCCEEEEEecCCCHHHH-HhC-ccHHHHHHhcCcEEeCCCCC
Confidence 34789999997631 1222233333221 122333444444333221 222 66666665 78889988873
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=24.93 E-value=1.8e+02 Score=21.99 Aligned_cols=15 Identities=13% Similarity=0.395 Sum_probs=12.1
Q ss_pred CCcEEEEEeChhHHH
Q 024921 133 KDYVTIMIDDISLVE 147 (260)
Q Consensus 133 ~~~~~iIiDdl~~Ll 147 (260)
..+.+||||+++.+.
T Consensus 101 ~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 101 APFKIIFLDEADALT 115 (226)
T ss_dssp CSCEEEEEETGGGSC
T ss_pred cCceEEEEeChhhcC
Confidence 367899999998763
No 72
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=24.74 E-value=63 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=25.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeecc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHED 182 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~ 182 (260)
.+.++|+|.|..=+.. .+..++.+++..+ ..+ +.++++..|+-
T Consensus 151 ~p~lllLDEPts~LD~--~~~~~l~~~l~~~---~~~-g~tiiivtHd~ 193 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDE--DSKHKVLKSILEI---LKE-KGIVIISSREE 193 (214)
T ss_dssp CCSEEEEESTTTTSCT--TTHHHHHHHHHHH---HHH-HSEEEEEESSC
T ss_pred CCCEEEEECCCcCCCH--HHHHHHHHHHHHH---HhC-CCEEEEEeCCH
Confidence 5679999999854421 2344455555444 222 45688878754
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=23.97 E-value=1.6e+02 Score=29.66 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=45.0
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcC
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGL 213 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~ 213 (260)
++.++|+|.|+ .|++..+...++..++.+.. ...++|++.|+- .+ +.+ ||.++.+.|=.
T Consensus 826 ~p~LLILDEPT-----sGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL--------~~---i~~-ADrIivLgp~g--- 884 (916)
T 3pih_A 826 GRTLYILDEPT-----VGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL--------DV---IKN-ADHIIDLGPEG--- 884 (916)
T ss_dssp SSEEEEEESTT-----TTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH--------HH---HTT-CSEEEEEESSS---
T ss_pred CCCEEEEECCC-----CCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH--------HH---HHh-CCEEEEecCCC---
Confidence 46799999998 35666666555555555543 356788777753 12 334 99999997632
Q ss_pred ccceeEEEEEEecC
Q 024921 214 ATDVHGQLTVLNKG 227 (260)
Q Consensus 214 a~DVtG~L~v~~~~ 227 (260)
.+-.|++. ..|.
T Consensus 885 -g~~~G~Iv-~~Gt 896 (916)
T 3pih_A 885 -GKEGGYIV-ATGT 896 (916)
T ss_dssp -GGGCCEEE-EEES
T ss_pred -CCCCCEEE-EEcC
Confidence 34567774 4443
No 74
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=22.88 E-value=1e+02 Score=28.79 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=27.8
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|+. +++......++..++.+.. .+.++|+..|+
T Consensus 176 ~P~lLlLDEPTs-----~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd 217 (538)
T 1yqt_A 176 NATFYFFDEPSS-----YLDIRQRLNAARAIRRLSE-EGKSVLVVEHD 217 (538)
T ss_dssp CCSEEEEESTTT-----TCCHHHHHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred CCCEEEEECCcc-----cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 467999999984 4555555555555555543 35678888884
No 75
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=21.57 E-value=1e+02 Score=28.86 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=27.7
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++|+|.|.. |++......+...++.++.+.+.++|+.+|+
T Consensus 419 ~p~lLlLDEPt~-----~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 419 DADIYLLDEPSA-----YLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp CCSEEEEECTTT-----TCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 467999999984 4554444444555555544445678888775
No 76
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=20.81 E-value=1.4e+02 Score=28.43 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 120 KILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 120 ~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.|..++...+ .+.++|+|.|+ .|+++.....+...++.+..+ +.++|+..|+
T Consensus 212 ~iArAL~~~p----~~~lLlLDEPt-----sgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd 263 (670)
T 3ux8_A 212 RLATQIGSRL----TGVLYVLDEPS-----IGLHQRDNDRLIATLKSMRDL-GNTLIVVEHD 263 (670)
T ss_dssp HHHHHHHTCC----CSCEEEEECTT-----TTCCGGGHHHHHHHHHHHHHT-TCEEEEECCC
T ss_pred HHHHHHhhCC----CCCEEEEECCc-----cCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.52 E-value=67 Score=27.43 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.2
Q ss_pred EEEeecCCCCccHHHHHHHHHhcCCC
Q 024921 29 VLIEDCVETSGSFVLHQLVKRSLSPT 54 (260)
Q Consensus 29 ~litd~~~t~~sfLl~~~l~~~L~~~ 54 (260)
+++....|+.=+-++..+....+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 77888888888888887777655433
No 78
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=20.47 E-value=1.3e+02 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=34.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAE 207 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~ 207 (260)
.+.++|+|.|.. |+++.....+...++.+. .+.++|+..|+-. + +.. ||-++-++
T Consensus 163 ~p~lllLDEPts-----~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~--------~---~~~-~d~v~~l~ 217 (247)
T 2ff7_A 163 NPKILIFDEATS-----ALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS--------T---VKN-ADRIIVME 217 (247)
T ss_dssp CCSEEEECCCCS-----CCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG--------G---GTT-SSEEEEEE
T ss_pred CCCEEEEeCCcc-----cCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH--------H---HHh-CCEEEEEE
Confidence 467999999983 556555455555555552 3567888887531 1 233 77777664
No 79
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=20.09 E-value=1.3e+02 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=19.3
Q ss_pred CCCcEEEEeecCCCCccHHHHHHHH
Q 024921 24 LSGRVVLIEDCVETSGSFVLHQLVK 48 (260)
Q Consensus 24 ~~~~l~litd~~~t~~sfLl~~~l~ 48 (260)
++|.++.|....|+.=|=|+..+.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688888888888888887776654
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=20.08 E-value=1.5e+02 Score=26.40 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=38.9
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccC-CCc
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPL-STG 212 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL-~TG 212 (260)
.+.++|+|+|+. +++......++..++.+.. .+..+++..|... + ...||.++.+..- ..|
T Consensus 355 ~~~~lllDEp~~-----~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~--------~----~~~~d~~~~~~~~~~~~ 416 (430)
T 1w1w_A 355 PSPFFVLDEVDA-----ALDITNVQRIAAYIRRHRN-PDLQFIVISLKNT--------M----FEKSDALVGVYRQQQEN 416 (430)
T ss_dssp CCSEEEESSTTT-----TCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHH--------H----HTTCSEEEEEEEETTTT
T ss_pred CCCEEEeCCCcc-----cCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHH--------H----HHhCCEEEEEEEeCCCC
Confidence 467999999973 4565565666666655432 2456777777531 2 1247888888654 345
Q ss_pred Ccc
Q 024921 213 LAT 215 (260)
Q Consensus 213 ~a~ 215 (260)
.|+
T Consensus 417 ~s~ 419 (430)
T 1w1w_A 417 SSK 419 (430)
T ss_dssp EEE
T ss_pred eeE
Confidence 443
No 81
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.04 E-value=1.4e+02 Score=26.28 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=27.1
Q ss_pred CcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHhhcccCCeEEEEeec
Q 024921 134 DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHE 181 (260)
Q Consensus 134 ~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~~~~~~~~lv~l~h~ 181 (260)
.+.++++|.|.. ++++..-..+...++.+..+.+.++|+..|+
T Consensus 145 ~P~lLLLDEP~s-----~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 145 NPKILLLDEPLS-----ALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp CCSEEEEESSST-----TSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECccc-----cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567999999973 4454333444444555544456678888884
Done!