BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024924
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase OS=Arabidopsis thaliana GN=FPG1
PE=1 SV=1
Length = 390
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/258 (81%), Positives = 228/258 (88%), Gaps = 3/258 (1%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVEAARRAIEE+C+GKKI + IIADDNKVI G+S SDF+ S+LGK I+SA RKGK
Sbjct: 1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
NLWL LDSPPFPSFQFGM GAIYIKGVAVT+YKRSAVKD++EWPSKYSKFFVELDDGLEL
Sbjct: 61 NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
SFTDKRRFAKVRLL +PTSV PISELGPDALLEPMTVDEF +SL+KKKITIK LLLDQ Y
Sbjct: 121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSRFPLEW 240
ISGIGNW+ADEVLYQA+IHPLQTA SLSKE C L IKEVI+ AVEVDAD S+FP W
Sbjct: 181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSYW 240
Query: 241 LFHFRWGKKPGK--VNGK 256
+FH R KKPGK V+GK
Sbjct: 241 IFHNRE-KKPGKAFVDGK 257
>sp|A4QFD9|FPG_CORGB Formamidopyrimidine-DNA glycosylase OS=Corynebacterium glutamicum
(strain R) GN=mutM PE=3 SV=1
Length = 286
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 35/279 (12%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSAS-DFEASVLGKAILSAHRKG 59
MPELPEVE RR +E+H +G IV + + + + + EA++ G + +A R+G
Sbjct: 1 MPELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRG 60
Query: 60 KNLWLRL-DSPPFPS-------FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFF 111
K LWL L D+P + GM+G + IK + D S + +
Sbjct: 61 KFLWLELIDAPSGETRPDLGLLVHLGMSGQMLIK-------------EPDAPISPHLRAK 107
Query: 112 VELDDGLELSFTDKRRFAKVRLLNDPTSVPP-ISELGPDALLEPMTVDEFTDSLSKKKIT 170
+ELD+G E+ F D+R F L + VP +S + D L E +L +K
Sbjct: 108 IELDNGDEVWFVDQRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARNLKSRKSE 167
Query: 171 IKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSA---- 226
IK LLL+Q +SGIGN ADE+L+QAKIHPLQ A LS LL+ K+V+ A
Sbjct: 168 IKRLLLNQEIVSGIGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKALAQG 227
Query: 227 --------VEVDADCSRFPLEWLFHFRWGKKPGKVNGKI 257
V V+ + F L + + G+ G+ +I
Sbjct: 228 GTSFDALYVNVNGNSGYFSLSLNAYGQTGEPCGRCGTQI 266
>sp|A9B0X2|FPG_HERA2 Formamidopyrimidine-DNA glycosylase OS=Herpetosiphon aurantiacus
(strain ATCC 23779 / DSM 785) GN=mutM PE=3 SV=1
Length = 273
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR++E+ +G+ V K++D S F ++ + I R+ K
Sbjct: 1 MPELPEVETVRRSLEQELVGRYFVALRSLGWPKIVDTHSPELFAEAIAQRQIQQVQRRAK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L + LD+ MTG + + DE +++ V LD+G EL
Sbjct: 61 YLLIELDNHETLIVHLRMTGQMLVVA-------------ADEPADRHTHVVVALDNGREL 107
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D R+F + L++ LGP+ L + T+D+F LS+K IK LLDQS
Sbjct: 108 RFHDPRKFGRWSLVDRSGVAALNQRLGPEPLGDDFTLDDFAQRLSRKATKIKPTLLDQSV 167
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
++G+GN ADE L+ AKIHPL++A SL+ A L + IK V+++++E
Sbjct: 168 LAGVGNIYADEALWLAKIHPLRSANSLNANEIAELFEAIKTVLRNSIE 215
>sp|Q8NNV7|FPG_CORGL Formamidopyrimidine-DNA glycosylase OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=mutM PE=3 SV=3
Length = 286
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 121/237 (51%), Gaps = 23/237 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSAS-DFEASVLGKAILSAHRKG 59
MPELPEVE RR +E+H +G IV + + + + + EA++ G + +A R+G
Sbjct: 1 MPELPEVEVVRRGLEDHMVGHTIVSATVLHPRAARNQLGGGPEIEANIAGLRVSAAKRRG 60
Query: 60 KNLWLRL-DSPPFPS-------FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFF 111
K LWL L D+P + GM+G + IK + D S + +
Sbjct: 61 KFLWLELIDAPSGETRPDLGLLVHLGMSGQMLIK-------------EPDAPISPHLRAK 107
Query: 112 VELDDGLELSFTDKRRFAKVRLLNDPTSVPP-ISELGPDALLEPMTVDEFTDSLSKKKIT 170
VELD+G E+ F D+R F L + VP +S + D L E +L +K
Sbjct: 108 VELDNGDEVWFVDQRTFGYWWLGDLVDGVPERVSHIATDVLDESADFSAIARNLKSRKSE 167
Query: 171 IKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
IK LLL+Q +SGIGN ADE+L+QAKIHPLQ A LS LL+ K+V+ A+
Sbjct: 168 IKRLLLNQEIVSGIGNIYADEMLWQAKIHPLQRADRLSLARLEELLQAGKDVMTKAL 224
>sp|Q03GC2|FPG_PEDPA Formamidopyrimidine-DNA glycosylase OS=Pediococcus pentosaceus
(strain ATCC 25745 / 183-1w) GN=mutM PE=3 SV=1
Length = 275
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 17/230 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR + GK IV +++ +K++ A F + GK IL+ R+GK
Sbjct: 1 MPELPEVETVRRGLAALVEGK-IVTNVVVRYSKMVS-PKAEIFAEELEGKKILNVRRRGK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L + S + M + ++G + +V D E K+ ELDDG +L
Sbjct: 59 YLLIDF------SGDYTMVSHLRMEG-------KYSVVDRREEYGKHDHVIFELDDGKDL 105
Query: 121 SFTDKRRFAKVRLL--NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ D R+F ++ L+ + V + +GP+ E +T++ T L +K +K+ LLDQ
Sbjct: 106 RYNDTRKFGRMNLVPTGEELQVGGLKTIGPEPTPETLTLEYLTHQLRNRKRGMKSFLLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
S I+G+GN ADEVL+ +KIHP Q + +L+ E A L + I E +Q A+E
Sbjct: 166 SMIAGLGNIYADEVLWLSKIHPQQISNTLTDEEIAILRESIFEELQLAIE 215
>sp|Q8FP17|FPG_COREF Formamidopyrimidine-DNA glycosylase OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=mutM PE=3 SV=3
Length = 285
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 118/237 (49%), Gaps = 22/237 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR +EEH +G+ IV + + + ++ EA++ G + + +R+G
Sbjct: 1 MPELPEVEVVRRGLEEHMVGRTIVSAAVVHPRTARNQAGGGAEIEANLTGLRVGATNRRG 60
Query: 60 KNLWLRLD--SPPFPS-----FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFV 112
K LWL LD + PS GM+G + VK D + + +
Sbjct: 61 KFLWLELDDVAQQAPSGLGLLVHLGMSGQML-------------VKSPDATLNPHLRARA 107
Query: 113 ELDDGLELSFTDKRRFAKVRLLNDPTSVPP-ISELGPDALLEPMTVDEFTDSLSKKKITI 171
ELDDG E+ F D+R F L VP +S + D L + + + L K I
Sbjct: 108 ELDDGNEVWFVDQRTFGYWWLGELVDGVPGRVSHIARDLLDDALDIPALAAVLKTKNTEI 167
Query: 172 KALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
K LLL+Q +SGIGN ADE+L++A IHP Q A +S LL+ +EV+ A++
Sbjct: 168 KRLLLNQEIVSGIGNIYADEMLWEAGIHPRQKASRISLTRLVALLEAGREVMTRALD 224
>sp|A0LV85|FPG_ACIC1 Formamidopyrimidine-DNA glycosylase OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=mutM PE=3 SV=1
Length = 284
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVI-DGVSASDFEASVLGKAILSAHRKG 59
MPELPEVE RR + H +G++I + + V A+DF ++G+ I + R+G
Sbjct: 1 MPELPEVETIRRGLARHLVGRRIGYAEVFHPRAVRRHSGGAADFTGRLIGRRIQAVLRRG 60
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K LW LDS GM+G + A P F D E
Sbjct: 61 KYLWFALDSDLALLAHLGMSGQFLLADAASPS------------PKHLRARFAFTDGDPE 108
Query: 120 LSFTDKRRFAKVRLLNDPTSVPP-ISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
L F D+R F + L VP IS + PD L EF ++++ +K LLDQ
Sbjct: 109 LRFVDQRTFGGLTLAPLIADVPASISHIAPDILDVAFDEAEFHRRFTQRRTGVKRALLDQ 168
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEV 229
+ ISG+GN ADE L++A++H V +S +C LL ++ V ++A+
Sbjct: 169 TLISGVGNIYADEALWRARLHYATPTVDISAATCRRLLAALRAVFRAALRA 219
>sp|A8L594|FPG_FRASN Formamidopyrimidine-DNA glycosylase OS=Frankia sp. (strain EAN1pec)
GN=mutM PE=3 SV=1
Length = 291
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 10/231 (4%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASD-FEASVLGKAILSAHRKG 59
MPELPEVE RR +E +G+ + + + V ++ +D F AS++G+ + +A R+G
Sbjct: 1 MPELPEVEVVRRGLERGVVGRTVAEVEVHHLRAVRRHLAGADHFAASLVGQTVATARRRG 60
Query: 60 KNLWLRL--DSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG 117
K LWL L P P+ + G + + G Q D+ + F D+G
Sbjct: 61 KYLWLGLTPSEPGGPAVGDALLGHLGMSG----QLLVVPADSPDQVHLRVRFRFT--DEG 114
Query: 118 LELSFTDKRRFAKVRLLNDPTSVP-PISELGPDALLEPMTVDEFTDSLSKKKITIKALLL 176
EL F D+R F + +++ +P PI+ + PD L + F D+L +++ +K LL
Sbjct: 115 RELRFVDQRTFGGLAVVSGGAELPAPIAHIAPDPLSVDFDPERFADALRRRRTGLKRALL 174
Query: 177 DQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
DQ+ ISG+GN ADE L+ A++H + ++++ LL ++ V+ +A+
Sbjct: 175 DQTLISGVGNIYADEGLWAARLHYARPTETVTRAEALRLLDAVRTVMTAAL 225
>sp|B0TER7|FPG_HELMI Formamidopyrimidine-DNA glycosylase OS=Heliobacterium modesticaldum
(strain ATCC 51547 / Ice1) GN=mutM PE=3 SV=1
Length = 277
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR++ G I K + K+ + + F ++ G+ I+ R+GK
Sbjct: 1 MPELPEVETVRRSLAGRITGLTIEK-VELRLPKIAFALPGTLFTDALRGRRIIELGRRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L LD MTG + + R ++ E ++ FF LDDG L
Sbjct: 60 YLLLHLDGDETLVIHLRMTGRLI--------HLRPEEREEPEAAHTHAVFF--LDDGSLL 109
Query: 121 SFTDKRRFAKVRLLNDPTSV--PPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+TD R+F + L+ ++ P LGP+ L + + +F ++L K+K +K LLLDQ
Sbjct: 110 RYTDVRQFGTLTLMTREAALRQPGKGRLGPEPLGQDFSFVDFRNALVKRKTKLKPLLLDQ 169
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
S+++G+GN ADE L +A++HP +TA SL E L CI+ V+Q ++ R
Sbjct: 170 SFLAGLGNIYADEALARARLHPDRTADSLDDEESRRLYDCIRTVLQEGIDAKGTSFR 226
>sp|A5UUN1|FPG_ROSS1 Formamidopyrimidine-DNA glycosylase OS=Roseiflexus sp. (strain
RS-1) GN=mutM PE=3 SV=1
Length = 273
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEV+ A ++ +G +IV+ D ++++ S +F + G+ + R+ K
Sbjct: 1 MPELPEVQLAADSLGVQIVGARIVRVERLDWTRMVETPSPDEFITLLAGRQVHGWGRRAK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
+ L LD + M+G++ V+ D P K++ + LDDG ++
Sbjct: 61 WILLFLDGGWTLALHLRMSGSL-------------TVQPADAPPDKHTHLVLRLDDGRQV 107
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D R+F + RLL+ + G + L TV+ + L +K IK LLLDQ+
Sbjct: 108 FFRDPRKFGRARLLDADGRAALDAAHGDEPLSNAFTVERLAELLRGRKRAIKPLLLDQAV 167
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
I+GIGN ADE L++A+IHPL+ A LS + A L I+ ++ A+
Sbjct: 168 IAGIGNIYADEALWRARIHPLRPASDLSADEVAALHDGIRAALRQAL 214
>sp|B2HJJ6|FPG_MYCMM Formamidopyrimidine-DNA glycosylase OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=mutM PE=3 SV=1
Length = 292
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR +++H +GK + + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLQDHVVGKTMTAVRVHHPRAVRRHEAGPADLTARLLGARISGTDRRG 60
Query: 60 KNLWLRLDSPPFPS----------FQFGMTGAIYIKGVAVTQYKR-SAVKDTDEWPSKYS 108
K LWL LD+ + GM+G + + GV ++ R SAV
Sbjct: 61 KYLWLTLDAGAPTTGRDDPDTALVVHLGMSGQMLLGGVPRAEHVRISAV----------- 109
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDS 163
LDDG LSF D+R F +L + D + VP P++ L D L VD
Sbjct: 110 -----LDDGTVLSFADQRTFGGWQLADLVSVDGSVVPAPVAHLARDPLDPLFDVDSVIKV 164
Query: 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVI 223
L K IK LLDQ +SGIGN ADE L++AK+H + A +L++ +L +V+
Sbjct: 165 LRGKHSEIKRQLLDQQVVSGIGNIYADEALWRAKVHGARVAATLTRRQLGAVLDAAADVM 224
Query: 224 QSAV 227
+ A+
Sbjct: 225 REAL 228
>sp|Q24XW2|FPG_DESHY Formamidopyrimidine-DNA glycosylase OS=Desulfitobacterium hafniense
(strain Y51) GN=mutM PE=3 SV=1
Length = 273
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR++ +H + ++I + I+ ++G F +V G S R+GK
Sbjct: 1 MPELPEVETIRRSLSQHILERRI-EEILIRWPGAVEGYEEKTFADAVRGLKFQSIERRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L+ G +I + +T R + P K++ ++L G E+
Sbjct: 60 YLLFTLEE-----------GWSFIAHMRMT--GRMVYHAQSQEPEKHTHVVLKLSSG-EI 105
Query: 121 SFTDKRRFAKVRLLNDPTSV--PPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
FTD R+F +++L+ + P ++ LGP+ L E + E L+ +K+ IKA LLDQ
Sbjct: 106 HFTDTRKFGRLQLVRTEERLQQPSLARLGPEPLEEGFSAAELGRRLAPRKLAIKAALLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
+ ++GIGN ADE L++A I P + A SL+KE L I +V++ + + R
Sbjct: 166 TLVAGIGNIYADEALFRAGIAPERCANSLTKEEIEKLYPAICQVLEEGIAANGTSFR 222
>sp|B8FU83|FPG_DESHD Formamidopyrimidine-DNA glycosylase OS=Desulfitobacterium hafniense
(strain DCB-2 / DSM 10664) GN=mutM PE=3 SV=1
Length = 273
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR++ +H + ++I + I+ ++G F +V G S R+GK
Sbjct: 1 MPELPEVETIRRSLSQHILERRI-EEILIRWPGAVEGYEEKTFADAVRGLKFQSIERRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L+ G +I + +T R + P K++ ++L G E+
Sbjct: 60 YLLFTLEE-----------GWSFIAHMRMT--GRMVYHAQSQEPEKHTHVVLKLSSG-EI 105
Query: 121 SFTDKRRFAKVRLLNDPTSV--PPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
FTD R+F +++L+ + P ++ LGP+ L E + E L+ +K+ IKA LLDQ
Sbjct: 106 HFTDTRKFGRLQLVRTEERLQQPSLARLGPEPLEEGFSAAELGRRLAPRKLAIKAALLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
+ ++GIGN ADE L++A I P + A SL+KE L I +V++ + + R
Sbjct: 166 TLVAGIGNIYADEALFRAGIAPERCANSLTKEEIEKLYPAICQVLEEGIAANGTSFR 222
>sp|A0PQ49|FPG_MYCUA Formamidopyrimidine-DNA glycosylase OS=Mycobacterium ulcerans
(strain Agy99) GN=mutM PE=3 SV=1
Length = 292
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR +++H +GK + + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLQDHVVGKTMTAVRVHHPRAVRRHEAGPADLTARLLGARISGTDRRG 60
Query: 60 KNLWLRLDSPPFPS----------FQFGMTGAIYIKGVAVTQYKR-SAVKDTDEWPSKYS 108
K LWL LD+ + GM+G + + GV ++ R SAV
Sbjct: 61 KYLWLTLDAGAPTTGRDDPDAALVVHLGMSGQMLLGGVPRAEHVRISAV----------- 109
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDS 163
LDDG LSF D+R F +L + D + VP P++ L D L VD
Sbjct: 110 -----LDDGTVLSFADQRTFGGWQLADLVSVDGSVVPAPVAHLARDPLDPLFDVDSVIKV 164
Query: 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVI 223
L K +K LLDQ +SGIGN ADE L++AK+H + A +L++ +L +V+
Sbjct: 165 LRGKHSEVKRRLLDQQVVSGIGNIYADEALWRAKVHGARVAATLTRRQLGAVLDAAADVM 224
Query: 224 QSAV 227
+ A+
Sbjct: 225 REAL 228
>sp|A5D0T6|FPG_PELTS Formamidopyrimidine-DNA glycosylase OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=mutM PE=3 SV=1
Length = 276
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 26/235 (11%)
Query: 1 MPELPEVEAARRAIEEHCIGKKI--VKSIIADDNKVIDGVSASDFEASVLGKAILSAHRK 58
MPELPEVE RR ++ G KI V+ ++ KVI S+F+ ++ K IL R+
Sbjct: 1 MPELPEVETVRRTLQAKLPGLKITGVEVLLP---KVIRSPELSEFKETIADKKILKVGRR 57
Query: 59 GKNLWLRLDSPPFPSFQFGMTGA-IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG 117
GK L + L + MTG +Y G + P++++ L +G
Sbjct: 58 GKYLLINLSEGYTLAVHLRMTGRLVYCAG--------------QDPPARHTHVIFNLSNG 103
Query: 118 LELSFTDKRRFAKVRLLNDPT----SVPPISELGPDALLEPMTVDEFTDSLSKKKITIKA 173
+L F D R+F ++ L+ PT + I ELG + L E T + L ++ IK
Sbjct: 104 CQLHFADMRQFGRIWLV--PTDALDGLKGIKELGVEPLEELFTREFLKKELRRRHARIKP 161
Query: 174 LLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
LLLDQ++I+G+GN ADE L++A+I+P + A +L+ A L + I++++Q +E
Sbjct: 162 LLLDQTFIAGLGNIYADEALHRARINPERLATTLTPREIARLYRAIRDLLQEGIE 216
>sp|A4J4X3|FPG_DESRM Formamidopyrimidine-DNA glycosylase OS=Desulfotomaculum reducens
(strain MI-1) GN=mutM PE=3 SV=1
Length = 277
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 17/231 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSA-HRKG 59
MPELPEVE R++E+H G ++ S+ +VI F ++G+ R+G
Sbjct: 1 MPELPEVETIVRSLEKHLSGL-VITSVDLFKPEVIRTPRVDIFTDQIVGRQFQKKLGRRG 59
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K L L + G+T I+++ Y D D K++ LD+G +
Sbjct: 60 KYLLLHMSD--------GLTLVIHLRMTGRLIYC-----DADLPLEKHTHVIFHLDNGKQ 106
Query: 120 LSFTDKRRFAKVRLL--NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLD 177
L F D RRF ++ L+ + +P I E+GP+ L + + L +++ IK+LLLD
Sbjct: 107 LRFADVRRFGRMSLVPTREVPHLPGIKEMGPEPLDTAFSREYLKKELRRRRTRIKSLLLD 166
Query: 178 QSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
Q +++G+GN ADE L++AKIHP + A L+ + L K I EVI S ++
Sbjct: 167 QCFVAGLGNIYADEALHEAKIHPERLAPDLTSREASGLHKAIIEVISSGIK 217
>sp|A0QV21|FPG_MYCS2 Formamidopyrimidine-DNA glycosylase OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=fpg PE=3 SV=1
Length = 285
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 108/233 (46%), Gaps = 21/233 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR + EH GK I + V + +D A +L I R+G
Sbjct: 1 MPELPEVEVVRRGLAEHVTGKTITGVRVHHPRAVRRHEAGPADLTARLLDVRITGTGRRG 60
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K LWL LD GM+G + + ++DT ++ + LDDG
Sbjct: 61 KYLWLTLDDSAALVVHLGMSGQMLL----------GPIRDT-----RHLRIAAVLDDGTA 105
Query: 120 LSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLSKKKITIKAL 174
LSF D+R F +L D T VP P++ + D L D L K IK
Sbjct: 106 LSFVDQRTFGGWQLTEMVTVDGTDVPEPVAHIARDPLDPLFDRDRVVTVLRGKHSEIKRQ 165
Query: 175 LLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
LLDQ+ +SGIGN ADE L++ KI+ + A +L + A LL EV+ A+
Sbjct: 166 LLDQTVVSGIGNIYADEALWRTKINGARIAAALPRRRLAELLDAAAEVMTDAL 218
>sp|A9WDC2|FPG_CHLAA Formamidopyrimidine-DNA glycosylase OS=Chloroflexus aurantiacus
(strain ATCC 29366 / DSM 635 / J-10-fl) GN=mutM PE=3
SV=1
Length = 278
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 14/227 (6%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R++ G+ I D K++ S +F A + G+ I + R+ K
Sbjct: 1 MPELPEVETVARSLAPQLQGRTITGLAKLDWPKMLT-PSPDEFAALIAGRRIEAIGRRAK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L LD + M+G + + A +T E +++ F ++LD+G L
Sbjct: 60 WLLLSLDGEWTLAIHLRMSGQLLV-----------AEPETSE--ARHVHFALDLDNGRRL 106
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D+R+F +V LL+ + GP+ L T + L ++ IKALLLDQ
Sbjct: 107 IFNDQRKFGRVHLLDRQGLAALDAVHGPEPLAADFTPSALAERLQNRRAPIKALLLDQHL 166
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
I+GIGN A+E L+ A+IHPL L+ E L I+ V+Q A+
Sbjct: 167 IAGIGNIYANEALWLARIHPLTPGAMLTPEQINELHHAIRHVLQEAI 213
>sp|A4FMJ7|FPG_SACEN Formamidopyrimidine-DNA glycosylase OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=mutM PE=3 SV=1
Length = 295
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 29/242 (11%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR + H +G+ + + + V V DF + G+ + +A R+G
Sbjct: 1 MPELPEVEVVRRGVAAHVVGRTVSEVEVLHPRSVRRHVPGPDDFATRLAGRCLTAARRRG 60
Query: 60 KNLWLRLDSPPFPS-------FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSK-YSKFF 111
K +WL L P GM+G + ++ DE P + + +
Sbjct: 61 KYMWLELGGGPEEVDAGEAVLAHLGMSGQLLVQ--------------PDEAPDETHLRVR 106
Query: 112 VELDDG-LELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLS 165
DDG +L F D+R F + L D +VP P++ + PD L ++ +
Sbjct: 107 FRFDDGGPQLRFVDQRTFGGLSLTELVSVDGVAVPEPVAHIAPDPLEPVFDLEAAVARMR 166
Query: 166 KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQS 225
K++ +K LLDQ+ +SGIGN ADE L++AK+H + +L++ TLL EV+Q+
Sbjct: 167 KRRTGVKRALLDQTLVSGIGNIYADEALWRAKLHWARPTANLTRPQARTLLVAAVEVMQA 226
Query: 226 AV 227
A+
Sbjct: 227 AL 228
>sp|P19210|FPG_BACFI Formamidopyrimidine-DNA glycosylase OS=Bacillus firmus GN=mutM PE=3
SV=3
Length = 274
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +R + E IGK I + N + + +FE ++ + I S R+GK
Sbjct: 1 MPELPEVETVKRTLTELVIGKTIAGITVKWANIIKEPADVLEFETLLMNQTIRSIRRRGK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L D M + ++G R + + +E ++ DG EL
Sbjct: 61 FLLFEFDD-------IVMVSHLRMEG-------RYGLYEKEEPLPPHTHVIFHFTDGEEL 106
Query: 121 SFTDKRRFAKVRLL--NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ D R+F + L V P++ LG + E T + ++ K IK LLDQ
Sbjct: 107 RYQDVRKFGTMHLFPKGSEEKVLPLAHLGVEPFSEQFTSELLMNAFQKTNRKIKVALLDQ 166
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDA 231
+ G+GN DE L++A+IHP + A SLSKE A L K I ++ AVE+
Sbjct: 167 KTVVGLGNIYVDEALFRARIHPERLAHSLSKEEMAVLHKAIVSTLEEAVEMGG 219
>sp|A0QJ66|FPG_MYCA1 Formamidopyrimidine-DNA glycosylase OS=Mycobacterium avium (strain
104) GN=mutM PE=3 SV=1
Length = 283
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 112/235 (47%), Gaps = 24/235 (10%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR + H +GK I + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLHSHVVGKTIGAVRVHHPRAVRRHEAGPADLTARLLGARITGTDRRG 60
Query: 60 KNLWLRLDSPPFP-SFQFGMTGAIYIKGVAVTQYKR-SAVKDTDEWPSKYSKFFVELDDG 117
K LWL LD GM+G + + V ++ R SA+ LDDG
Sbjct: 61 KYLWLLLDGRDTALVVHLGMSGQMLLGAVPRAEHVRISAL----------------LDDG 104
Query: 118 LELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLSKKKITIK 172
LSF D+R F L + D + VP P++ L D L D L +K IK
Sbjct: 105 TVLSFADQRTFGGWMLADLLEVDGSVVPEPVAHLARDPLDPRFDADAVVKVLRRKHSEIK 164
Query: 173 ALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
LLDQ +SGIGN ADE L++AK+H + A +L+++ +L +V++ A+
Sbjct: 165 RQLLDQQVVSGIGNIYADEALWRAKVHGARIADALTRKQLTAVLDAAADVMRDAL 219
>sp|Q837G3|FPG_ENTFA Formamidopyrimidine-DNA glycosylase OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=mutM PE=3 SV=3
Length = 280
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 17/243 (6%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R+ +E+ +GK I + +I ++I+ F+ + G+ I R+GK
Sbjct: 1 MPELPEVETVRKGLEKLVVGKTI-QEVIVFWPRIIESPEVDVFQGQLAGQTIEGIERRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L +L M + ++G + D+ +K++ DG +L
Sbjct: 60 FLIFKLSDN-------DMISHLRMEG-------KYEFHQADDEIAKHTHVMFTFTDGTQL 105
Query: 121 SFTDKRRFAKVRLL--NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ D R+F ++ L+ N I LGP+ + + F L K IK LLLDQ
Sbjct: 106 RYLDVRKFGRMTLVPKNQGHQYKGILALGPEPTPDVFQLATFQQGLKKHHKAIKPLLLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSRFPL 238
++G+GN DE L+QA+IHP Q A SL ATL + I +V+ AVE R L
Sbjct: 166 KLVTGLGNIYVDEALWQAQIHPEQPADSLKPAEVATLYQAIIDVLARAVEAGGTTIRTYL 225
Query: 239 EWL 241
L
Sbjct: 226 NAL 228
>sp|Q74EG5|FPG_GEOSL Formamidopyrimidine-DNA glycosylase OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=mutM PE=3 SV=3
Length = 271
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 113/229 (49%), Gaps = 19/229 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R I H G++ V ++ A K+ + + + G+ I R+ K
Sbjct: 1 MPELPEVETTLRGIAPHVTGRR-VTAVTARAAKLRLPIP-PELGERLTGRVIERVERRAK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L LR GMTG + V P KY + LDDG L
Sbjct: 59 YLLLRCGDG-TAIIHLGMTGTLR-------------VAPAGSPPGKYDHLDLVLDDGRTL 104
Query: 121 SFTDKRRFAKVRLL-NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKK-ITIKALLLDQ 178
F D R+F V +DP + P +++LGP+ P+ + S S+K+ IK LL+D
Sbjct: 105 RFRDPRKFGLVLWTGSDPLAHPLLAQLGPEPF-PPLFNGSYLFSRSRKRNAAIKLLLMDN 163
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
+ G+GN A+E L++A+IHP + A SLS+E CATL + +V++ A+
Sbjct: 164 RIVVGVGNIYANEALFRARIHPERAAGSLSEEDCATLATAVGDVLRDAI 212
>sp|A6TFM6|FPG_KLEP7 Formamidopyrimidine-DNA glycosylase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=mutM PE=3
SV=1
Length = 269
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 19/229 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +RR IE H +G I+ +++ + ++ VS + S + +LS R+ K
Sbjct: 1 MPELPEVETSRRGIEPHLVGATILHAVV-RNGRLRWPVSEEIYRLSDV--PVLSVRRRAK 57
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPS-KYSKFFVELDDGLE 119
L L L + GM+G++ I ++E P+ K+ + + +G
Sbjct: 58 YLLLELPDG-WIIVHLGMSGSLRIL--------------SEELPAEKHDHVDLVMSNGKV 102
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQS 179
L +TD RRF P ++ LGP+ L + D +KKK IK L+D
Sbjct: 103 LRYTDPRRFGAWLWTRTLEGHPVLAHLGPEPLSDAFNADYLQQKCAKKKTAIKPWLMDNK 162
Query: 180 YISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
+ G+GN A E L+ A IHP + A SLS+E C L+K IK V+ ++E
Sbjct: 163 LVVGVGNIYASESLFSAGIHPDRLASSLSREECEQLVKVIKLVLLRSIE 211
>sp|A7NQM8|FPG_ROSCS Formamidopyrimidine-DNA glycosylase OS=Roseiflexus castenholzii
(strain DSM 13941 / HLO8) GN=mutM PE=3 SV=1
Length = 283
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEV+ ++ G +I + D ++++ S +F + G+ + R+ K
Sbjct: 1 MPELPEVQHTADSLGIQIAGARIARVERLDWTRMVETPSPDEFIRLLTGRQVRGWDRRAK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
+ L LD + M+G++ V + P K++ + L+DG ++
Sbjct: 61 WILLFLDDGWTLALHLRMSGSL-------------TVHPAEAQPDKHTHLALRLEDGRQI 107
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D R+F + RLL+ + G + L + TV+ L +K IK LLLDQS
Sbjct: 108 FFLDPRKFGRARLLDSAGLAALDAAHGDEPLSDAFTVERLASLLRNRKRAIKPLLLDQSV 167
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
I+GIGN ADE L++A+IHPL+ A LS A L I+ ++ A+
Sbjct: 168 IAGIGNIYADEALWRARIHPLRPAADLSAAEVAALHDGIRAALRQAL 214
>sp|B5XTG8|FPG_KLEP3 Formamidopyrimidine-DNA glycosylase OS=Klebsiella pneumoniae
(strain 342) GN=mutM PE=3 SV=1
Length = 269
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 114/229 (49%), Gaps = 19/229 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +RR IE H +G I+ +I+ + ++ VS + S + +LS R+ K
Sbjct: 1 MPELPEVETSRRGIEPHLVGVTILHAIVRN-GRLRWPVSEEIYRLSDV--PVLSVRRRAK 57
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPS-KYSKFFVELDDGLE 119
L L L + GM+G++ I ++E P+ K+ + + +G
Sbjct: 58 YLLLELPDG-WIIVHLGMSGSLRIL--------------SEELPAEKHDHVDLVMSNGKV 102
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQS 179
L +TD RRF P ++ LGP+ L + D +KKK IK L+D
Sbjct: 103 LRYTDPRRFGAWLWTKTLEDHPVLAHLGPEPLSDEFNADYLQQKCAKKKTAIKPWLMDNK 162
Query: 180 YISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
+ G+GN A E L+ A IHP + A SLS+E C L+K IK V+ ++E
Sbjct: 163 LVVGVGNIYASESLFSAGIHPDRLASSLSREECEQLVKVIKLVLLRSIE 211
>sp|B1MDL2|FPG_MYCA9 Formamidopyrimidine-DNA glycosylase OS=Mycobacterium abscessus
(strain ATCC 19977 / DSM 44196) GN=mutM PE=3 SV=1
Length = 286
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVI-DGVSASDFEASVLGKAILSAHRKG 59
MPELPEVE RR + H +GK I +++ + V A + + G+ I R+G
Sbjct: 1 MPELPEVEVVRRGLHHHLVGKTIASTLVYHERAVRRQSGGAVELAGLLAGQQISGTGRRG 60
Query: 60 KNLWLRLDSPPFPS---FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDD 116
K LWL L+ GM+G + I ++ Q+ R A LDD
Sbjct: 61 KYLWLTLEGSSGAQALVVHLGMSGQMLIGPISRPQHLRIAAT---------------LDD 105
Query: 117 GLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLSKKKITI 171
G LSF D+R F + + D + +P P++ + D L E + L K I
Sbjct: 106 GSVLSFVDQRTFGGWMVTDLVTVDGSELPEPVAHIARDPLDELFEIGAVVTRLRGKHTEI 165
Query: 172 KALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
K LLDQ+ +SG+GN ADE L+QA++H + +S+ +L V++ A+
Sbjct: 166 KRALLDQTVVSGVGNIYADEALWQARVHGRRLTDGMSRAKLTEVLDSAAAVMRLAL 221
>sp|O34403|FPG_BACSU Formamidopyrimidine-DNA glycosylase OS=Bacillus subtilis (strain
168) GN=mutM PE=3 SV=4
Length = 276
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR + GK I I N + +F + G+ I S R+GK
Sbjct: 1 MPELPEVETVRRTLTGLVKGKTIKSVEIRWPNIIKRPAEPEEFARKLAGETIQSIGRRGK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L LD + M + ++G + + +E K+ + DG +L
Sbjct: 61 FLLFHLD-------HYVMVSHLRMEG-------KYGLHQAEEPDDKHVHVIFTMTDGTQL 106
Query: 121 SFTDKRRFAKVRLL--NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ D R+F + L + P+S+LGP+ E T D L+K +K LLDQ
Sbjct: 107 RYRDVRKFGTMHLFKPGEEAGELPLSQLGPEPDAEEFTSAYLKDRLAKTNRAVKTALLDQ 166
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR--- 235
+ G+GN DE L++A +HP A LS ++ TL IK +Q A++ R
Sbjct: 167 KTVVGLGNIYVDEALFRAGVHPETKANQLSDKTIKTLHAEIKNTLQEAIDAGGSTVRSYI 226
Query: 236 -----FPLEWLFHFRWGKK 249
+ L HF +GKK
Sbjct: 227 NSQGEIGMFQLQHFVYGKK 245
>sp|B8G9X1|FPG_CHLAD Formamidopyrimidine-DNA glycosylase OS=Chloroflexus aggregans
(strain MD-66 / DSM 9485) GN=mutM PE=3 SV=1
Length = 275
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R++ + + IV D +++ +F A V G+ I + R+ K
Sbjct: 1 MPELPEVETVARSLAPQLLSRTIVGLAKLDWPRMLTP-PPPEFAALVAGRRIEAVGRRAK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L LD+ G T AI+++ A D + + F ++LDDG L
Sbjct: 60 WLLLTLDA--------GWTLAIHLRMSGHLLVAEPAAAD-----APHVHFALDLDDGRRL 106
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D+R+F +V LL+ + + GP+ L + T + L ++ IKALLLDQ
Sbjct: 107 IFDDQRKFGRVHLLDSTGLLALDAAHGPEPLTDDFTPAVLAERLRNRQAPIKALLLDQRL 166
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
I+GIGN A+E L+ A IHPL +L+ + A L I+ V+ A+
Sbjct: 167 IAGIGNIYANEALWLAGIHPLTPGGTLTVDQIAALHHAIRLVLADAI 213
>sp|A9HI30|FPG_GLUDA Formamidopyrimidine-DNA glycosylase OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=mutM PE=3 SV=1
Length = 286
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 120/263 (45%), Gaps = 30/263 (11%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R + H GK I + +A + +D A + G I R+ K
Sbjct: 1 MPELPEVETVMRGMRLHLDGKTIAR--VAVRRADLRFPFPADLVARLEGATITGFARRAK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
+ +RLD+ GM+G + + ++ P ++ FF E DG
Sbjct: 59 YILIRLDTGDTLLLHLGMSGRVLL-----------SLPGDAPVPDRHEHFFFETTDGTRC 107
Query: 121 SFTDKRRFAKVRLLNDPTSVPP----ISELGPDALLEPMTVDEFTDSLSKKKITIKALLL 176
D RRF V L+ PT+ ++ LGP+ L + + L++++ +IKA LL
Sbjct: 108 GLIDPRRFGAVDLM--PTAEERAHRLLARLGPEPLGNQFSQHWLQEVLARRRTSIKAALL 165
Query: 177 DQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSA---------- 226
DQ+ ++G+GN E L++A IHP + A +L A L++ I+ V++ A
Sbjct: 166 DQTVVAGLGNIYVSEALFRAGIHPARLACTLDAAEDARLVQAIRAVLREAIAAGGSSLRD 225
Query: 227 -VEVDADCSRFPLEWLFHFRWGK 248
V+ D + F W + R G+
Sbjct: 226 YVQPDGELGYFQHAWRVYGRAGQ 248
>sp|Q3ABL4|FPG_CARHZ Formamidopyrimidine-DNA glycosylase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=mutM PE=3
SV=3
Length = 263
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 23/235 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +R + +GK I + + K+I VS +F V+GK I++ R+GK
Sbjct: 1 MPELPEVETIKRTLAPKILGKTIYRVEVYLP-KIIKNVSVEEFTRRVVGKEIVALKRRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L + L + MTG + I + + KD K++ +L D LEL
Sbjct: 60 YLLIDLSGKETVTVHLRMTGKLLI-------LPKGSPKD------KHTHAIFDLGD-LEL 105
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D R+F + E+GP+ L + T + L + +KA+LLDQ
Sbjct: 106 HFNDIRQFGGFSF--------EMPEIGPEPLEDEFTPEYLKTKLKASQKNLKAVLLDQKI 157
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
I+GIGN ADE+L++A + P + A SLS++ L K I++++ +E R
Sbjct: 158 IAGIGNIYADEILFEAGLSPKRIAASLSEDEAEELFKAIRKILALGIEYRGTSIR 212
>sp|Q6MCT3|FPG_PARUW Formamidopyrimidine-DNA glycosylase OS=Protochlamydia amoebophila
(strain UWE25) GN=mutM PE=3 SV=3
Length = 276
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 17/229 (7%)
Query: 1 MPELPEVEAARRAIEE-HCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKG 59
MPELPEV + +++ IGKKI+ + I K + + F V G++I + R+G
Sbjct: 1 MPELPEVHTIVQDLKQSRLIGKKIISTEIFWP-KTLAVPTPEIFCQQVQGQSIQNVDRRG 59
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K + +L + F MTG R + S Y + ++G +
Sbjct: 60 KYIIFQLSNQMFLIVHLRMTG-------------RFQFVTSQTPASPYVRIQFNFENGDQ 106
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQS 179
L F D R+F + L++D + I LGP+ LL T + F D + +K +K+LLLDQS
Sbjct: 107 LRFHDTRKFGRWYLVSDVEEI--IGHLGPEPLLSSFTFELFEDMMKNRKTLLKSLLLDQS 164
Query: 180 YISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
+I G+GN DE L++AK+HPL A ++ + L IK V++ ++
Sbjct: 165 FIVGLGNIYVDEALWEAKLHPLIPANQINLKHLKILYHSIKYVLEKGIQ 213
>sp|Q5YS09|FPG_NOCFA Formamidopyrimidine-DNA glycosylase OS=Nocardia farcinica (strain
IFM 10152) GN=mutM PE=3 SV=3
Length = 294
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSAS-DFEASVLGKAILSAHRKG 59
MPELPEVE RR + EH G+ + I V ++ S D A + G+ + +A R+G
Sbjct: 1 MPELPEVEVVRRGLAEHVAGRVVGAVTITHPRSVRRHLAGSADLAARMTGRRVRAAQRRG 60
Query: 60 KNLWLRLDSPPFPS---------FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKF 110
K LWL D P GM+G + ++ A K++
Sbjct: 61 KYLWLTFDEPGAADETALDAALVVHLGMSGQMLVQPAAAPV-------------EKHAHI 107
Query: 111 FVELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLS 165
LDDG EL F D+R F L D + VP P++ + D L + ++
Sbjct: 108 RAALDDGSELRFVDQRTFGGWALAPLAEVDGSLVPEPVAHIARDPLDPRFDAESVVAAIR 167
Query: 166 KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQS 225
K IK +LLDQ+ +SGIGN ADE L++A I+ + A L++ + LL ++ V+
Sbjct: 168 AKNSEIKRVLLDQTVVSGIGNIYADESLWRAGINGNRLASGLTRPAVRRLLAEVRAVMLE 227
Query: 226 AV 227
A+
Sbjct: 228 AL 229
>sp|Q92BF1|FPG_LISIN Formamidopyrimidine-DNA glycosylase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=mutM PE=3 SV=3
Length = 273
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE+PEVE R ++E GKKI +I K+I +F ++G+ I + R+GK
Sbjct: 1 MPEMPEVENVRATLQELVPGKKI-DQVIVRVPKMIVATPPDEFVHMLVGQEIEAVRRRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L + S M G + D +E +K++ +D EL
Sbjct: 60 FLLFDLTNCTILS-HLRMEGKFRLM-------------DENEEVTKHTHIIFHFEDHTEL 105
Query: 121 SFTDKRRFAKVRLLND--PTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
F D R+F + + N + I +LGP+ L T+ +F + K IK LLDQ
Sbjct: 106 RFLDVRKFGTMEVTNKYGESETKSIKKLGPEPLTPAFTLADFATGVKKTSRAIKTALLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
++G+GN ADE+ ++AK+HP + A SLS + + + K ++ AV + R
Sbjct: 166 KLVAGVGNIYADEICFEAKVHPERAANSLSDKEINRIFEATKSIMTEAVALGGSTVR 222
>sp|Q73VL9|FPG_MYCPA Formamidopyrimidine-DNA glycosylase OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=mutM
PE=3 SV=3
Length = 283
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 24/235 (10%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR + H +GK I + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLHAHVVGKTIGAVRVHHPRAVRRHEAGPADLTARLLGARITGTDRRG 60
Query: 60 KNLWLRLDSPPFP-SFQFGMTGAIYIKGVAVTQYKR-SAVKDTDEWPSKYSKFFVELDDG 117
K LWL LD GM+G + + V ++ R SA+ LDDG
Sbjct: 61 KYLWLLLDGCDTALVVHLGMSGQMLLGAVPRAEHVRISAL----------------LDDG 104
Query: 118 LELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLSKKKITIK 172
LSF D+R F L + D + +P P++ L D L L +K IK
Sbjct: 105 TVLSFADQRTFGGWMLADLLEVDGSILPRPVAHLARDPLDPRFDAAAVVKVLRRKHSEIK 164
Query: 173 ALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
LLDQ +SGIGN ADE L++AK+H + A +++ +L EV++ A+
Sbjct: 165 RQLLDQQVVSGIGNIYADEALWRAKVHGARIAATMTGRQLTAVLDAAAEVMRDAL 219
>sp|Q16DL0|FPG_ROSDO Formamidopyrimidine-DNA glycosylase OS=Roseobacter denitrificans
(strain ATCC 33942 / OCh 114) GN=mutM PE=3 SV=1
Length = 283
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 11/238 (4%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKV-IDGVSASDFEASVLGKAILSAHRKG 59
MPELPEVE RR + G I + AD N+ + +D A + GK + R+
Sbjct: 1 MPELPEVETVRRGLTPAMEGVVIAR---ADVNRPDLRWPFPADMAARLTGKRVERLRRRS 57
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K + + LDS GM+G + + G + Q+ S P K+ + +
Sbjct: 58 KYILMDLDSGETLLVHLGMSGRMLVSGDPLGQFVHS-----HPAPEKHDHVVFHMANNAR 112
Query: 120 LSFTDKRRFAKVRLLNDPTSVPP--ISELGPDALLEPMTVDEFTDSLSKKKITIKALLLD 177
++F D RRF + L+ ++ +S LGP+ L ++ + +K++LLD
Sbjct: 113 ITFNDPRRFGAMDLMETASADTHKLLSVLGPEPLGNDFHESHLIEAFKNRNSPVKSVLLD 172
Query: 178 QSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
Q +SG+GN E L++AKIHP++ A +S ATL+ I+EV+ A+E R
Sbjct: 173 QRIVSGLGNIYVCEALFRAKIHPIRKAGKISGARVATLVPIIREVLAEAIEAGGSSLR 230
>sp|Q74IB5|FPG_LACJO Formamidopyrimidine-DNA glycosylase OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=mutM PE=3 SV=3
Length = 276
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 17/230 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE+PEVE RR + GK I K II +++ + +F + K IL R GK
Sbjct: 1 MPEMPEVETVRRTLTPLVKGKTIAKIIIWYPKIIVN--NPDEFVEKLTNKKILKIDRYGK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L R S M + ++G + + D K+ DG L
Sbjct: 59 YLLFRF------SDDLTMVSHLRMEG-------KYHLVTPDHPKGKHEHVEFVFTDGTAL 105
Query: 121 SFTDKRRFAKVRLLNDPT--SVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ D R+F ++ L+ T I LGP+ E +V+ F ++LS+KK IK LLDQ
Sbjct: 106 RYADVRKFGRMHLVETGTEKQTTGIRHLGPEPNTEEFSVEYFINALSRKKKNIKNTLLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
+ + G+GN DEVL+Q+KIHPL +A S+ + L I I A +
Sbjct: 166 TVVCGLGNIYVDEVLWQSKIHPLSSAKSIPADKIVDLYHNINHTITVATK 215
>sp|C6BUX8|FPG_DESAD Formamidopyrimidine-DNA glycosylase OS=Desulfovibrio salexigens
(strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763)
GN=mutM PE=3 SV=1
Length = 274
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 19/237 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R + E GK I I + + V + F + V G+ I HR+ K
Sbjct: 1 MPELPEVEVISRGLAESLEGKTIESVKILNHSSV--KMPWYLFSSRVAGEKITRIHRRAK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L + L +F MTG + T P +++ L DG +
Sbjct: 59 LLIMDLGDDLHITFHLKMTGRVLAHEGPTT-------------PEPHTRIVFGLTDGGSI 105
Query: 121 SFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
F D R+F +VR LN+ LGP+ L +T +E + ++ +K IK LLL+Q
Sbjct: 106 EFHDTRKFGEVRALNNEELQEWDFYKNLGPEPL--EVTAEELAERITGRKAQIKGLLLNQ 163
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
S ++G GN ADE L+++ IHP A LS ES L ++ V++ A++ + R
Sbjct: 164 SVVAGCGNIYADESLFRSGIHPKAKASDLSNESLVKLFTELQAVLKQAIQENGSSIR 220
>sp|Q8Y6W7|FPG_LISMO Formamidopyrimidine-DNA glycosylase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=mutM PE=3
SV=3
Length = 273
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 17/237 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE+PEVE R ++E GKKI +I K+I +F ++G+ I R+GK
Sbjct: 1 MPEMPEVENVRATLQELVPGKKI-DQVIVRVPKMIVSTPPDEFVHMLVGQEIEGVRRRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L L + S M G + D +E SK++ +D EL
Sbjct: 60 FLLFDLTNCTILS-HLRMEGKFRLM-------------DENEEVSKHTHIIFHFEDHTEL 105
Query: 121 SFTDKRRFAKVRLLND--PTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
F D R+F + + N I +LGP+ L + T+ +F + K IK LLDQ
Sbjct: 106 RFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTLTDFATGVKKTSRAIKTALLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSR 235
++G+GN ADE+ ++AK+ P + A SLS + + K K ++ AV + R
Sbjct: 166 KLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFKATKSIMTEAVALGGSTVR 222
>sp|Q47S77|FPG_THEFY Formamidopyrimidine-DNA glycosylase OS=Thermobifida fusca (strain
YX) GN=mutM PE=3 SV=3
Length = 296
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 120/236 (50%), Gaps = 16/236 (6%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVI-DGVSASDFEASVLGKAILSAHRKG 59
MPELPEVE RR +E+ +G + + V A+DF A V G + A R+G
Sbjct: 1 MPELPEVEVVRRGLEKWVVGASFGEVEVLHPRAVRRHAPGAADFAARVSGCGVTEARRRG 60
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYI--KGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG 117
K LWL LDS GM+G + + + A ++ R + T ++ + +
Sbjct: 61 KYLWLTLDSGEALLAHLGMSGQLLVQPRHAAAERHLRVRLPLT-------ARQGHDPEAP 113
Query: 118 LELSFTDKRRFAKV---RLLNDPTS--VPP-ISELGPDALLEPMTVDEFTDSLSKKKITI 171
EL F D+R F + RL++D T +P IS + D L D F +L +K+ +
Sbjct: 114 QELRFVDQRTFGHLLVDRLVDDGTGTGLPSVISHIARDPLDPAFDEDAFAAALCRKRTEL 173
Query: 172 KALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
K LLDQS ISGIGN ADE L+ +++H +LS+ ATLL ++EV+ +A+
Sbjct: 174 KRALLDQSLISGIGNIYADEALWMSQLHWATPTEALSRSQVATLLAAVREVMVAAL 229
>sp|A3PXU1|FPG_MYCSJ Formamidopyrimidine-DNA glycosylase OS=Mycobacterium sp. (strain
JLS) GN=mutM PE=3 SV=1
Length = 296
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 110/244 (45%), Gaps = 32/244 (13%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR ++ H GK I + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLDAHVTGKAITAVRVHHPRAVRRHEAGPADLTARLLGMRITGTGRRG 60
Query: 60 KNLWLRLDSPPFP-----------SFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYS 108
K LWL LD P GM+G + + + + R A
Sbjct: 61 KYLWLTLDGGDEPLARRAESSVALVVHLGMSGQMLLGPIPKEDHLRIAAL---------- 110
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDS 163
LDDG LSF D+R F L + D T VP P++ + D L D
Sbjct: 111 -----LDDGTALSFVDQRTFGGWLLADLVTVDGTDVPVPVAHVARDPLDPRFDRDAVVKV 165
Query: 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVI 223
L K IK LLDQ+ +SGIGN ADE L++AK++ + A SL+K A +L +V+
Sbjct: 166 LRGKHSEIKRQLLDQTVVSGIGNIYADEALWRAKVNGARLAESLTKPKLAEILDHAADVM 225
Query: 224 QSAV 227
+ A+
Sbjct: 226 RDAL 229
>sp|A5G7Q9|FPG_GEOUR Formamidopyrimidine-DNA glycosylase OS=Geobacter uraniireducens
(strain Rf4) GN=mutM PE=3 SV=1
Length = 271
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR I + +GK+I + + + D ++ + G+ I + R+GK
Sbjct: 1 MPELPEVETTRRGIAPYLVGKRICRVTVRTAKLRLP--LQPDLDSILSGRIISAVERRGK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L +R + GMTG + + D P ++ + L+ GL L
Sbjct: 59 YLLVRFTAGTL-ILHLGMTGNLRLV-------------QADTPPGRHDHLDLVLNSGLCL 104
Query: 121 SFTDKRRFAKVR-LLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQS 179
TD RRF+ + +DP +++ GP+ L + D ++IT+K ++D
Sbjct: 105 RLTDPRRFSTIVWTHDDPLRHTLLAKHGPEPLTGDFSGDYLYTKSRGRRITVKQFIMDSR 164
Query: 180 YISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
++G+GN A E L++A IHP A +LS C L IKEV+ A+
Sbjct: 165 VLAGVGNIYACEALFRAGIHPETPAGALSTTHCLRLADTIKEVLTDAI 212
>sp|B1VYY1|FPG_STRGG Formamidopyrimidine-DNA glycosylase OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=mutM PE=3 SV=1
Length = 286
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 21/234 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSAS-DFEASVLGKAILSAHRKG 59
MPELPEVE RR +E G+ + + + V ++ DF A + G +A R+G
Sbjct: 1 MPELPEVEVVRRGLERWVSGRTVSEVEVLHPRAVRRHLAGGVDFAARLAGARFGAAMRRG 60
Query: 60 KNLWLRLDSPPFPSF-QFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDD-- 116
K LW+ +D GM+G + V+ D K+ + + DD
Sbjct: 61 KYLWVPIDEASASLLGHLGMSGQLL-------------VRPADAPDEKHLRIRMRFDDAL 107
Query: 117 GLELSFTDKRRFAKVRL-LNDPTSVP-PISELGPDALLEPMTVDE-FTDSLSKKKITIKA 173
G EL F D+R F + L N P +P I+ + D L +P+ D F +L ++ T+K
Sbjct: 108 GTELRFVDQRTFGGLSLHANTPDGLPETIAHIARDPL-DPLFDDAAFHTALRLRRTTVKR 166
Query: 174 LLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
LLDQS ISG+GN ADE L++A++H + +L++ A LL ++V+ +A+
Sbjct: 167 ALLDQSLISGVGNIYADEALWRARLHYDRPTATLTRPRSAELLGHARDVMNAAL 220
>sp|B8GUQ6|FPG_THISH Formamidopyrimidine-DNA glycosylase OS=Thioalkalivibrio sp. (strain
HL-EbGR7) GN=mutM PE=3 SV=1
Length = 271
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 23/231 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKV---IDGVSASDFEASVLGKAILSAHR 57
MPELPEVE RR IE H G++ V S+I + ++ + G A LG+ + R
Sbjct: 1 MPELPEVETTRRGIERHVTGRR-VTSVIVREPRLRWPVPGDLAERLTGHTLGRVL----R 55
Query: 58 KGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG 117
+ K L + +D+ GM+G++ V D K+ + LD G
Sbjct: 56 RAKYLLIEVDTGLL-LLHLGMSGSL-------------RVVTPDAPLRKHDHIDLCLDSG 101
Query: 118 LELSFTDKRRFAKVRLLNDPTSVPPI-SELGPDALLEPMTVDEFTDSLSKKKITIKALLL 176
L D RRF V + P P+ +ELGP+ L + D S K+++ IK ++
Sbjct: 102 RCLRLHDPRRFGAVLWIEGPAHAHPLLAELGPEPLGKDFDADYLFRSTRKRRVAIKQHIM 161
Query: 177 DQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
+ + G+GN A E L+ A I P + A L++ CA L++ I++V+ A+
Sbjct: 162 NSHVVVGVGNIYASEALFLAGIRPGRAAGRLTRAECARLVETIRQVLGEAI 212
>sp|A4W514|FPG_ENT38 Formamidopyrimidine-DNA glycosylase OS=Enterobacter sp. (strain
638) GN=mutM PE=3 SV=1
Length = 269
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 19/229 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +RR IE H +G I+ +++ + S+ ++ K +LS R+ K
Sbjct: 1 MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRW---PVSNEIHTLSDKPVLSVQRRAK 57
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPS-KYSKFFVELDDGLE 119
L L L + GM+G++ I ++E P+ K+ + + +G
Sbjct: 58 YLLLELPDG-WIIIHLGMSGSLRIL--------------SEELPAEKHDHVDLVMSNGKV 102
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQS 179
L +TD RRF + ++ LGP+ L E + +KKK IK L+D
Sbjct: 103 LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSEAFNAEYLKARCAKKKTPIKPWLMDNK 162
Query: 180 YISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
+ G+GN A E L+ A IHP + A SLS++ C L+K IK V+ ++E
Sbjct: 163 LVVGVGNIYASESLFAAGIHPDRLASSLSEQECEILVKVIKAVLLRSIE 211
>sp|Q1BAM5|FPG_MYCSS Formamidopyrimidine-DNA glycosylase OS=Mycobacterium sp. (strain
MCS) GN=mutM PE=3 SV=1
Length = 296
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 109/244 (44%), Gaps = 32/244 (13%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR ++ H GK I + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLDAHVTGKAITAVRVHHPRAVRRHEAGPADLTARLLGMRITGTGRRG 60
Query: 60 KNLWLRLDSPPFP-----------SFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYS 108
K LWL LD P GM+G + + + + R A
Sbjct: 61 KYLWLTLDDGDEPLARRAESSVALVVHLGMSGQMLLGPIPKEDHLRIAAL---------- 110
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDS 163
DDG LSF D+R F L + D T VP P++ + D L D
Sbjct: 111 -----FDDGTALSFVDQRTFGGWLLADLVTVDGTDVPVPVAHVARDPLDPRFDRDAVVKV 165
Query: 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVI 223
L K IK LLDQ+ +SGIGN ADE L++AK++ + A SL+K A +L +V+
Sbjct: 166 LRGKHSEIKRQLLDQTVVSGIGNIYADEALWRAKVNGARLAESLTKPKLAEILDHAADVM 225
Query: 224 QSAV 227
+ A+
Sbjct: 226 RDAL 229
>sp|A1UED7|FPG_MYCSK Formamidopyrimidine-DNA glycosylase OS=Mycobacterium sp. (strain
KMS) GN=mutM PE=3 SV=1
Length = 296
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 109/244 (44%), Gaps = 32/244 (13%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR ++ H GK I + V + +D A +LG I R+G
Sbjct: 1 MPELPEVEVVRRGLDAHVTGKAITAVRVHHPRAVRRHEAGPADLTARLLGMRITGTGRRG 60
Query: 60 KNLWLRLDSPPFP-----------SFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYS 108
K LWL LD P GM+G + + + + R A
Sbjct: 61 KYLWLTLDDGDEPLARRAESSVALVVHLGMSGQMLLGPIPKEDHLRIAAL---------- 110
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDS 163
DDG LSF D+R F L + D T VP P++ + D L D
Sbjct: 111 -----FDDGTALSFVDQRTFGGWLLADLVTVDGTDVPVPVAHVARDPLDPRFDRDAVVKV 165
Query: 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVI 223
L K IK LLDQ+ +SGIGN ADE L++AK++ + A SL+K A +L +V+
Sbjct: 166 LRGKHSEIKRQLLDQTVVSGIGNIYADEALWRAKVNGARLAESLTKPKLAEILDHAADVM 225
Query: 224 QSAV 227
+ A+
Sbjct: 226 RDAL 229
>sp|A4TE57|FPG_MYCGI Formamidopyrimidine-DNA glycosylase OS=Mycobacterium gilvum (strain
PYR-GCK) GN=mutM PE=3 SV=1
Length = 282
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 106/233 (45%), Gaps = 21/233 (9%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSA-SDFEASVLGKAILSAHRKG 59
MPELPEVE RR + H G+ I + V + +D A +L I R+G
Sbjct: 1 MPELPEVEVVRRGLAAHVTGRTISAVRVHHPRAVRRHEAGPADLTARLLDSVITGTGRRG 60
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K LWL L GM+G + + V + R AV LDDG
Sbjct: 61 KYLWLTLGDGSAVVVHLGMSGQMLLGPVRNENHLRIAVL---------------LDDGTA 105
Query: 120 LSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLSKKKITIKAL 174
LSF D+R F L + D + VP P++ + D L + L +K IK
Sbjct: 106 LSFVDQRTFGGWMLADLVTVDGSDVPAPVAHIARDPLDPLFDRAAVVNVLRRKHSEIKRQ 165
Query: 175 LLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAV 227
LLDQ+ +SGIGN ADE L++AKI+ + A +SK A LL +V+ A+
Sbjct: 166 LLDQTVVSGIGNIYADESLWRAKINGARLASGVSKAKLAELLDAATDVMTDAL 218
>sp|Q88WV4|FPG_LACPL Formamidopyrimidine-DNA glycosylase OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=mutM PE=3
SV=3
Length = 274
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 17/230 (7%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RR + G I SI K+I+ F+ + + I + R+GK
Sbjct: 1 MPELPEVETVRRGLNRLVSGATIA-SIEVFWPKIINN-DVDSFKQRLANQTIQTIDRRGK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L R F G+T +++ + V E K++ L D +L
Sbjct: 59 YLLFR--------FSNGLTMVSHLR-----MEGKYNVVPRGEDQGKHTHVIFHLTDDRDL 105
Query: 121 SFTDKRRFAKVRLL--NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ D R+F ++ L+ + +V + +GP+ + E +T+ T + K K IK LLLDQ
Sbjct: 106 LYNDTRKFGRMTLVPTGEENTVAGLRTIGPEPVAEQLTLAYMTATFGKSKKMIKPLLLDQ 165
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVE 228
S I+GIGN ADE L+ +KIHP++ A SL+ + ATL + I + + A++
Sbjct: 166 SKIAGIGNIYADETLWMSKIHPMRPANSLTTDEIATLRQNIIDEMAMAIK 215
>sp|Q6APT2|FPG_DESPS Formamidopyrimidine-DNA glycosylase OS=Desulfotalea psychrophila
(strain LSv54 / DSM 12343) GN=mutM PE=3 SV=3
Length = 277
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 118/262 (45%), Gaps = 22/262 (8%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R I G+ IV ++ ++ + + GK I R+GK
Sbjct: 1 MPELPEVEIILRGISPLICGRTIV-AVGGSGKQLRLPLPLPELNRDASGKEITRLERRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
+ + L+ GMTG + V ++ +K+ F+ LD+ E
Sbjct: 60 YISIFLNDGGILVLHLGMTGQL-------------GVFPKEQARAKHDHFWCRLDNNQEF 106
Query: 121 SFTDKRRFAKVRLLNDPTSV----PPISELGPDALLEPMTVDEFTDSLSKKKITIKALLL 176
+ D RRF +R L S +LGP+ L E T D + K + IK ++
Sbjct: 107 RYNDTRRFGSIRFLPAGKSRMLQESLYQKLGPEPLGETFTADYLRRAAEGKSLAIKNFIM 166
Query: 177 DQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSRF 236
D + GIGN A+E L++A IHP ++ S+ +E L +CI++++ A+ DC
Sbjct: 167 DSHIVVGIGNIYANESLFKAAIHPARSVQSIEQEEWEKLARCIQQILLHAI----DCGGS 222
Query: 237 PLEWLFHFRWGKKPGKVNGKIF 258
+ + + G+ ++N K++
Sbjct: 223 TISDFVNAKGGQGYFQMNFKVY 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,479,305
Number of Sequences: 539616
Number of extensions: 3795134
Number of successful extensions: 10779
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 9540
Number of HSP's gapped (non-prelim): 544
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)