Query 024924
Match_columns 260
No_of_seqs 113 out of 1053
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 16:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twl_A Formamidopyrimidine-DNA 100.0 3.9E-76 1.3E-80 534.9 26.1 258 1-259 1-260 (310)
2 3u6p_A Formamidopyrimidine-DNA 100.0 1.4E-72 4.8E-77 504.0 21.9 242 2-259 1-256 (273)
3 1k82_A Formamidopyrimidine-DNA 100.0 9.7E-72 3.3E-76 497.5 25.6 240 2-259 1-251 (268)
4 2xzf_A Formamidopyrimidine-DNA 100.0 1.2E-71 4E-76 497.9 20.3 240 2-259 1-253 (271)
5 1ee8_A MUTM (FPG) protein; bet 100.0 3.1E-69 1.1E-73 480.7 22.8 231 2-259 1-246 (266)
6 1k3x_A Endonuclease VIII; hydr 100.0 5.4E-67 1.9E-71 465.6 16.6 234 2-259 1-245 (262)
7 3vk8_A Probable formamidopyrim 100.0 3.1E-66 1.1E-70 467.2 15.4 231 1-259 1-265 (295)
8 1tdh_A NEI endonuclease VIII-l 100.0 4.4E-59 1.5E-63 428.9 8.1 229 1-256 1-275 (364)
9 3w0f_A Endonuclease 8-like 3; 100.0 8.6E-53 2.9E-57 375.8 13.8 234 3-259 2-262 (287)
10 3r8n_M 30S ribosomal protein S 97.5 0.00017 5.9E-09 55.5 5.8 49 168-219 11-59 (114)
11 2vqe_M 30S ribosomal protein S 97.2 0.00041 1.4E-08 54.3 5.0 51 168-221 12-62 (126)
12 3doa_A Fibrinogen binding prot 97.1 0.0051 1.7E-07 54.6 11.8 66 146-227 167-233 (288)
13 3iz6_M 40S ribosomal protein S 97.1 0.00081 2.8E-08 54.3 5.8 51 167-220 22-72 (152)
14 2xzm_M RPS18E; ribosome, trans 97.1 0.00099 3.4E-08 53.9 6.2 52 167-221 24-75 (155)
15 3u5c_S 40S ribosomal protein S 97.0 0.00068 2.3E-08 54.4 4.7 51 167-220 24-74 (146)
16 3j20_O 30S ribosomal protein S 96.9 0.00073 2.5E-08 54.3 4.5 50 168-220 18-67 (148)
17 3bbn_M Ribosomal protein S13; 93.1 0.01 3.5E-07 47.3 -1.3 48 167-218 56-103 (145)
18 1mu5_A Type II DNA topoisomera 93.0 0.55 1.9E-05 44.2 10.3 67 154-222 236-304 (471)
19 1qyr_A KSGA, high level kasuga 84.7 1.9 6.6E-05 36.8 6.5 49 163-220 201-249 (252)
20 2zbk_B Type 2 DNA topoisomeras 84.1 7.7 0.00026 37.0 11.0 67 154-222 235-303 (530)
21 3fut_A Dimethyladenosine trans 83.1 2.2 7.5E-05 37.0 6.3 54 163-220 215-268 (271)
22 3gru_A Dimethyladenosine trans 81.9 2.4 8.3E-05 37.2 6.1 61 163-223 222-289 (295)
23 3uzu_A Ribosomal RNA small sub 74.7 2.5 8.7E-05 36.7 4.0 48 164-220 226-273 (279)
24 3tqs_A Ribosomal RNA small sub 74.3 2.1 7.1E-05 36.7 3.3 47 164-219 208-254 (255)
25 1qam_A ERMC' methyltransferase 64.9 5.2 0.00018 33.6 3.8 42 164-220 199-240 (244)
26 3ftd_A Dimethyladenosine trans 64.7 6 0.00021 33.6 4.1 45 163-220 201-245 (249)
27 2gqf_A Hypothetical protein HI 57.2 32 0.0011 30.9 7.8 62 153-220 263-326 (401)
28 3v76_A Flavoprotein; structura 52.2 29 0.001 31.5 6.7 62 154-221 283-346 (417)
29 2h1r_A Dimethyladenosine trans 40.3 44 0.0015 28.7 5.7 31 189-220 260-290 (299)
30 2i0z_A NAD(FAD)-utilizing dehy 40.0 92 0.0032 28.0 8.1 63 154-221 301-368 (447)
31 1zq9_A Probable dimethyladenos 36.5 47 0.0016 28.2 5.3 30 190-220 249-278 (285)
32 1owf_B IHF-beta, integration H 29.7 70 0.0024 22.5 4.4 41 205-246 15-57 (94)
33 1mul_A NS2, HU-2, DNA binding 29.0 73 0.0025 22.2 4.4 52 205-258 14-69 (90)
34 2o97_B NS1, HU-1, DNA-binding 27.8 75 0.0026 22.1 4.2 41 205-246 14-56 (90)
35 3rhi_A DNA-binding protein HU; 26.5 82 0.0028 22.1 4.3 51 206-258 18-72 (93)
36 1b8z_A Protein (histonelike pr 26.4 83 0.0028 21.8 4.3 29 205-233 14-42 (90)
37 3hcg_A Peptide methionine sulf 25.0 25 0.00084 27.7 1.2 50 206-258 4-53 (146)
38 1p71_A DNA-binding protein HU; 24.7 92 0.0032 21.8 4.3 41 205-246 14-56 (94)
39 1c8c_A DNA-binding protein 7A; 24.2 48 0.0016 21.5 2.2 32 48-85 16-47 (64)
40 1exe_A Transcription factor 1; 24.1 88 0.003 22.3 4.1 28 206-233 15-42 (99)
41 1yub_A Ermam, rRNA methyltrans 22.9 37 0.0013 28.0 2.1 30 192-221 211-240 (245)
42 1owf_A IHF-alpha, integration 22.8 1E+02 0.0035 21.8 4.3 40 206-246 17-58 (99)
43 3c4i_A DNA-binding protein HU 22.8 1E+02 0.0036 21.8 4.3 40 206-246 15-56 (99)
44 3fxd_A Protein ICMQ; helix bun 20.9 97 0.0033 20.2 3.2 23 205-231 3-25 (57)
45 2np2_A HBB; protein-DNA comple 20.5 1.2E+02 0.0041 21.9 4.3 53 205-258 27-83 (108)
46 2bf9_A Pancreatic hormone; tur 20.3 1.5E+02 0.005 17.6 3.7 30 198-227 3-32 (36)
No 1
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=100.00 E-value=3.9e-76 Score=534.87 Aligned_cols=258 Identities=81% Similarity=1.250 Sum_probs=229.3
Q ss_pred CCChhHHHHHHHHHHhhcCCceEEEEEecCCCccccCCChhhHHHHhcCCeEEeEEEeeeEEEEecCCCCccEEeecceE
Q 024924 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (260)
Q Consensus 1 MPElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG 80 (260)
||||||||++++.|++.+.|++|++|++..++.+++++.+++|.+.|.|++|++|.|+||||+++|+++.+|++||||+|
T Consensus 1 MPELPEVetvrr~L~~~l~G~~I~~v~v~~~~~~~~~~~~~~f~~~L~G~~I~~v~RrGKyL~~~l~~~~~L~~HLgMsG 80 (310)
T 3twl_A 1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGKNLWLELDSPPFPSFQFGMAG 80 (310)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCBEEEEEECCCTTTBCSSCHHHHHHHHTTCBEEEEEEETTEEEEEESSSCEEEEECTTTC
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEEEEcCCcceeccCChHHHHHHcCCCEEEEEEeeeeEEEEEeCCCCEEEEEcCCce
Confidence 99999999999999999999999999998555666656789999999999999999999999999998779999999999
Q ss_pred EEEEeeccccccccccccCCCCCCCCceEEEEEEcCCceEEEecCCcceEEEEecCCCCCCCccCCCCCCCCCCCCHHHH
Q 024924 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEF 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~~~~~~l~~lGpDpl~~~~~~~~~ 160 (260)
+|++.+.+.+.|.+....+.+.||++|.+++|.|+||..|.|+|+|+||.++++++.+..+.+.+||||||+++||.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~kh~~v~l~l~~g~~L~f~D~RrfG~~~l~~~~~~~~~l~~LGPDpL~~~f~~~~~ 160 (310)
T 3twl_A 81 AIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEF 160 (310)
T ss_dssp EEEEC-----------------CCCTTEEEEEEETTSCEEEEECSSSCCEEEEESCGGGSTTGGGCCCBTTTSCCCHHHH
T ss_pred EEEEecCCcccccccccccccCCCCceeEEEEEECCCCEEEEEecCcCcEEEEecchhhCchhhhcCCCCCCCcCCHHHH
Confidence 99997654444443332233457789999999999999999999999999999987667788999999999999999999
Q ss_pred HHHHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc
Q 024924 161 TDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADCSRFPLEW 240 (260)
Q Consensus 161 ~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~~~~~~~~ 240 (260)
.+++++++++||.+||||++||||||||+|||||+|||||.+++++||++|+.+|+++|++||++||+.||+++.|+..|
T Consensus 161 ~~~l~~~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~g~f~~~~ 240 (310)
T 3twl_A 161 AESLAKKKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSNW 240 (310)
T ss_dssp HHHHHTCCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTTCGGGSCTTC
T ss_pred HHHHhCCcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCCC--cCCcccC
Q 024924 241 LFHFRWGKKPGK--VNGKIFM 259 (260)
Q Consensus 241 lv~~R~~~~~~~--~~~~~~~ 259 (260)
+||+|+|+ ||. +||++|.
T Consensus 241 ~vygR~g~-pC~~~~CG~~I~ 260 (310)
T 3twl_A 241 IFHNREKK-PGKAFVDGKKID 260 (310)
T ss_dssp GGGGTTSC-TTSCEETTEECE
T ss_pred EEeCcCCC-CCCCCCCCCeEE
Confidence 99999998 999 9999985
No 2
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=100.00 E-value=1.4e-72 Score=504.00 Aligned_cols=242 Identities=29% Similarity=0.397 Sum_probs=216.5
Q ss_pred CChhHHHHHHHHHHhhcCCceEEEEEecCCCccccCC-ChhhHHHHhcCCeEEeEEEeeeEEEEecCCCCccEEeecceE
Q 024924 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGV-SASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (260)
Q Consensus 2 PElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~~-~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG 80 (260)
|||||||++++.|++.+.|++|++|++. .+++++.+ ++++|.+.|.|++|++|.|+||||+++|++ .+|++||||+|
T Consensus 1 PELPEVetv~r~L~~~l~G~~I~~v~v~-~~~~~~~~~~~~~~~~~L~G~~i~~v~rrGK~L~~~l~~-~~L~~HLgM~G 78 (273)
T 3u6p_A 1 PQLPEVETIRRTLLPLIVGKTIEDVRIF-WPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDR-DALISHLRMEG 78 (273)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBEEEEEES-CGGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSS-EEEEEECTTTC
T ss_pred CCchHHHHHHHHHHHHhCCCEEEEEEEc-CcccccCCCChHHHHHHhCCCEEEEEEeeeeEEEEEECC-CeEEEeCCcEE
Confidence 9999999999999999999999999998 46666543 588999999999999999999999999987 78999999999
Q ss_pred EEEEeeccccccccccccCCCCCCCCceEEEEEEcCCceEEEecCCcceEEEEecCC--CCCCCccCCCCCCCCCCCCHH
Q 024924 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~--~~~~~l~~lGpDpl~~~~~~~ 158 (260)
+|++.+. ..+|.+|.|++|.|+||..|.|+|+|+||.++++++. ..++.+++||||||+++||.+
T Consensus 79 ~~~~~~~-------------~~~~~~h~~v~l~~~~g~~l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~ 145 (273)
T 3u6p_A 79 RYAVASA-------------LEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPA 145 (273)
T ss_dssp EEEEEET-------------TSCCCTTEEEEEEETTSEEEEEECTTCCCEEEEEEHHHHTTSTTTTTCCCCTTSTTSCHH
T ss_pred EEEEecC-------------CCCCCcceEEEEEECCCCEEEEEecCcCCEEEEEcchhhccchhhhhcCCCCCcccCCHH
Confidence 9998653 2356789999999999999999999999999999743 356789999999999999999
Q ss_pred HHHHHHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCC-----
Q 024924 159 EFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADC----- 233 (260)
Q Consensus 159 ~~~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~----- 233 (260)
+|.+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+++|+++|++||++||+.||++
T Consensus 146 ~~~~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~~~~ 225 (273)
T 3u6p_A 146 VLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYV 225 (273)
T ss_dssp HHHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHhcCcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ------CCCCcccEEeeeCCCCCCCcCCcccC
Q 024924 234 ------SRFPLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 234 ------~~~~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
|.|+..|+||+|+|+ ||.+||++|.
T Consensus 226 ~~~g~~g~~~~~~~VygR~g~-pC~~CG~~I~ 256 (273)
T 3u6p_A 226 NTQGEAGTFQHHLYVYGRQGN-PCKRCGTPIE 256 (273)
T ss_dssp -----------CCSSTTCTTS-BCTTTCCBCE
T ss_pred cCCCCcCcccceEEEeCCCcC-CCCCCCCeEE
Confidence 578999999999998 9999999985
No 3
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=9.7e-72 Score=497.51 Aligned_cols=240 Identities=30% Similarity=0.470 Sum_probs=218.9
Q ss_pred CChhHHHHHHHHHHhhcCCceEEEEEecCCCccccCCChhhHHHHhcCCeEEeEEEeeeEEEEecCCCCccEEeecceEE
Q 024924 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (260)
Q Consensus 2 PElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG~ 81 (260)
|||||||++++.|++.+.|++|++|++.. ++ ++.+.+++ .+.|.|++|++|.|+||||+++|+++ +|++||||+|+
T Consensus 1 PELPEVetv~r~L~~~~~G~~I~~v~v~~-~~-~~~~~~~~-~~~L~G~~i~~v~rrGK~L~~~l~~~-~l~~HLgM~G~ 76 (268)
T 1k82_A 1 PELPEVETSRRGIEPHLVGATILHAVVRN-GR-LRWPVSEE-IYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGS 76 (268)
T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEESC-CB-SSSBCCHH-HHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCE
T ss_pred CCchhHHHHHHHHHHHhCCCEEEEEEEcC-CC-ccCCCchh-hhhcCCCEEEEEEEEccEEEEEeCCC-EEEEECCCeEE
Confidence 99999999999999999999999999974 55 43333445 66799999999999999999999876 89999999999
Q ss_pred EEEeeccccccccccccCCCCCCCCceEEEEEEcCCceEEEecCCcceEEEEecCCCCCCCccCCCCCCCCCCCCHHHHH
Q 024924 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFT 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~~~~~~l~~lGpDpl~~~~~~~~~~ 161 (260)
|++... ..+|+||.|++|.|+||..|.|+|+|+||.++++++.+.++.+.+||||||+++||.++|.
T Consensus 77 ~~~~~~-------------~~~~~kh~~v~l~~~~g~~l~f~D~R~fG~~~l~~~~~~~~~l~~LGpdpL~~~f~~~~~~ 143 (268)
T 1k82_A 77 LRILPE-------------ELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLH 143 (268)
T ss_dssp EEEESS-------------SCCCCTTCCEEEEETTSCEEEEECSSCCCEEEEESCSSSSTTTTTCCCCTTSTTSCHHHHH
T ss_pred EEEecC-------------CCCCCCceEEEEEECCCCEEEEEecCCCcEEEEECchhhhhHhhcCCCCCCCCcCCHHHHH
Confidence 998642 1245689999999999999999999999999988554567789999999999999999999
Q ss_pred HHHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCC--------
Q 024924 162 DSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADC-------- 233 (260)
Q Consensus 162 ~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~-------- 233 (260)
+++++++++||.+||||++||||||||+|||||+|||||.+++++||++|+.+|+++|++||+.||+.||++
T Consensus 144 ~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d~~~~~ 223 (268)
T 1k82_A 144 QKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSD 223 (268)
T ss_dssp HHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ---CCCCcccEEeeeCCCCCCCcCCcccC
Q 024924 234 ---SRFPLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 234 ---~~~~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
|.|+..|+||+|+|+ ||.+||++|.
T Consensus 224 g~~G~f~~~~~VygR~g~-pC~~CG~~I~ 251 (268)
T 1k82_A 224 GKPGYFAQELQVYGRKGE-PCRVCGTPIV 251 (268)
T ss_dssp --CCSCGGGCSSTTCTTS-BCTTTCCBCE
T ss_pred CCCCcccceEEEcccCCC-CCCCCCCEee
Confidence 467899999999997 9999999985
No 4
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=100.00 E-value=1.2e-71 Score=497.87 Aligned_cols=240 Identities=27% Similarity=0.385 Sum_probs=218.1
Q ss_pred CChhHHHHHHHHHHhhcCCceEEEEEecCCCccccC-CChhhHHHHhcCCeEEeEEEeeeEEEEecCCCCccEEeecceE
Q 024924 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDG-VSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (260)
Q Consensus 2 PElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~-~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG 80 (260)
|||||||++++.|++.+.|++|++|++.. ++ ++. +. ++|.+.|.|++|++|.||||||+++|+++.+|++||||+|
T Consensus 1 PELPEVetv~r~L~~~~~G~~I~~v~v~~-~~-l~~~~~-~~~~~~L~G~~i~~v~rrGK~L~~~l~~g~~L~~HLgM~G 77 (271)
T 2xzf_A 1 PELPEVETVRRELEKRIVGQKIISIEATY-PR-MVLTGF-EQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEG 77 (271)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBCCEEEESC-GG-GBTTCH-HHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTC
T ss_pred CCchhHHHHHHHHHHHhCCCEEEEEEEcC-Cc-cccCCc-HHHHHhcCCCEEEEEEeEccEEEEEECCCCEEEEeCCCeE
Confidence 99999999999999999999999999974 55 432 33 5787889999999999999999999998768999999999
Q ss_pred EEEEeeccccccccccccCCCCCCCCceEEEEEEcCCceEEEecCCcceEEEEecCC--CCCCCccCCCCCCCCCCCCHH
Q 024924 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~--~~~~~l~~lGpDpl~~~~~~~ 158 (260)
+|++... ..+++||.|++|.|+||. |.|+|+|+||.+++++.. +.++.+.+||||||+++||.+
T Consensus 78 ~~~~~~~-------------~~~~~kh~~v~l~~~~g~-l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~ 143 (271)
T 2xzf_A 78 KYRLATL-------------DAPREKHDHLTMKFADGQ-LIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEK 143 (271)
T ss_dssp EEEEECT-------------TCCCCTTEEEEEECSSCE-EEEECTTCCCEEEEEEGGGHHHHHHHTTCCCCSSTTTCCHH
T ss_pred EEEEecC-------------CCCCCCceEEEEEEcCCe-EEEEecCcCCEEEEEcCcchhhhhHHhcCCCCCCCCcCCHH
Confidence 9998642 224578999999999998 999999999999998643 344578999999999999999
Q ss_pred HHHHHHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCC-----
Q 024924 159 EFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADC----- 233 (260)
Q Consensus 159 ~~~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~----- 233 (260)
+|.+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+.+|+++|++||++||+.||++
T Consensus 144 ~~~~~l~~~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~~~~ 223 (271)
T 2xzf_A 144 LFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYS 223 (271)
T ss_dssp HHHHHHHTCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHhcCCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -----CCCCcccEEeeeCCCCCCCcCCcccC
Q 024924 234 -----SRFPLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 234 -----~~~~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
|.|+..|+||+|.|+ ||.+||++|.
T Consensus 224 ~~g~~G~f~~~~~VygR~G~-pC~~CG~~I~ 253 (271)
T 2xzf_A 224 ALGSTGKMQNELQVYGKTGE-KCSRCGAEIQ 253 (271)
T ss_dssp CTTTTCCGGGGCSSTTCTTS-BCTTTCCBCE
T ss_pred CCCCCCcccceEEEccCCCC-CCCCCCCEee
Confidence 467889999999997 9999999985
No 5
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=3.1e-69 Score=480.71 Aligned_cols=231 Identities=31% Similarity=0.496 Sum_probs=211.5
Q ss_pred CChhHHHHHHHHHHhhcCCceEEEEEecCCCccccCCChhhHHHHhcCCeEEeEEEeeeEEEEecCCCCccEEeecceEE
Q 024924 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (260)
Q Consensus 2 PElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG~ 81 (260)
|||||||++++.|++.+.|++|++|++.. +++++. + +.|.|++|++|.|+||||+++|+++.+|++||||+|+
T Consensus 1 PELPEvetv~r~L~~~~~G~~I~~v~v~~-~~~l~~--~----~~L~G~~i~~v~rrGK~L~~~l~~g~~L~~HLgM~G~ 73 (266)
T 1ee8_A 1 PELPEVETTRRRLRPLVLGQTLRQVVHRD-PARYRN--T----ALAEGRRILEVDRRGKFLLFALEGGVELVAHLGMTGG 73 (266)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECSC-TTTEES--G----GGGTTEEEEEEEEETTEEEEEETTTEEEEEECTTTCE
T ss_pred CCchHHHHHHHHHHHHhCCCEEEEEEEeC-CccccC--h----hhcCCcEEEeeeeEeeEEEEEeCCCCEEEEECCCeEE
Confidence 99999999999999999999999999973 553432 1 5799999999999999999999987689999999999
Q ss_pred EEEeeccccccccccccCCCCCCCCceEEEEEEcCCceEEEecCCcceEEEEecCC--CCCCCccCCCCCCCCCCCCHHH
Q 024924 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVDE 159 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~--~~~~~l~~lGpDpl~~~~~~~~ 159 (260)
|++. ++||.|++|.|+ |..|.|+|+|+||.+++++.. +.++.+.+||||||+++||.++
T Consensus 74 ~~~~------------------~~kh~~v~l~~~-g~~l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~~ 134 (266)
T 1ee8_A 74 FRLE------------------PTPHTRAALVLE-GRTLYFHDPRRFGRLFGVRRGDYREIPLLLRLGPEPLSEAFAFPG 134 (266)
T ss_dssp EESS------------------CCTTEEEEEEES-SCEEEEECTTCCCEEEEEETTCCTTCTHHHHCCCCTTSTTCCHHH
T ss_pred EEEe------------------cCCceEEEEEEc-CcEEEEEecCcCCEEEEEcCchhhhhhHHhcCCCCCCCCcCCHHH
Confidence 9872 146899999998 888999999999999998643 5667899999999999999999
Q ss_pred HHHHHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCC------
Q 024924 160 FTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADC------ 233 (260)
Q Consensus 160 ~~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~------ 233 (260)
|.+++++++++||++||||++||||||||+|||||+|||||.+++++||++|+.+|+++|++||++||+.||++
T Consensus 135 ~~~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d~~~ 214 (266)
T 1ee8_A 135 FFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALREVLAEAVELGGSTLSDQSY 214 (266)
T ss_dssp HHHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred HHHHHhcCCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred -------CCCCcccEEeeeCCCCCCCcCCcccC
Q 024924 234 -------SRFPLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 234 -------~~~~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
|.|+..|+||+|+|+ ||.+||++|.
T Consensus 215 ~~~~g~~G~f~~~~~VygR~g~-pC~~CG~~I~ 246 (266)
T 1ee8_A 215 RQPDGLPGGFQTRHAVYGREGL-PCPACGRPVE 246 (266)
T ss_dssp CCTTSCCCSCGGGCSSTTCTTS-BCTTTCCBCE
T ss_pred ccCCCCCCcccceEEEcccCCC-CCCCCCCEee
Confidence 346799999999997 9999999985
No 6
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=100.00 E-value=5.4e-67 Score=465.62 Aligned_cols=234 Identities=20% Similarity=0.312 Sum_probs=204.6
Q ss_pred CChhHHHHHHHHHHhhcCCceEEEEEecCCCccccCCChhhHHHHhcCCeEEeEEEeeeEEEEecCCCCccEEeecceEE
Q 024924 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (260)
Q Consensus 2 PElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG~ 81 (260)
|||||||++++.|++.+.|++|++|++.. +. + .+|.+.|.|++|+++.|+||||+++|+++.+|++||||+|+
T Consensus 1 PElPEVe~~~r~L~~~~~G~~I~~v~~~~-~~-~-----~~~~~~L~G~~i~~v~rrGK~L~~~l~~g~~l~~HLgM~G~ 73 (262)
T 1k3x_A 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAF-PQ-L-----KTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGV 73 (262)
T ss_dssp CCHHHHHHHHHHHHHHHBTCCCSEEEESS-GG-G-----TTHHHHHTTCCEEEEEEETTEEEEEETTSCEEEEECTTTCE
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEEECC-cc-h-----HHHHHhcCCcEEEEEEEEeeEEEEEeCCCCEEEEECCcceE
Confidence 99999999999999999999999999863 33 2 25777899999999999999999999987789999999999
Q ss_pred EEEeeccccccccccccCCCCCCCC-ceEEEEEEcCCceEEEecCCcceEEEEecCC--CCCCCccCCCCCCCCCCCCHH
Q 024924 82 IYIKGVAVTQYKRSAVKDTDEWPSK-YSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~p~k-~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~--~~~~~l~~lGpDpl~~~~~~~ 158 (260)
|++.... +.++++ |.|++|.++||..|.|.|+| |+ +++.. +.++.+++||||||+++||.+
T Consensus 74 ~~~~~~~------------~~~~~~~~~~~~l~~~~g~~l~~~d~r-~~---l~~~~~~~~~~~l~~lGpdpL~~~f~~~ 137 (262)
T 1k3x_A 74 WRVVDTG------------EEPQTTRVLRVKLQTADKTILLYSASD-IE---MLRPEQLTTHPFLQRVGPDVLDPNLTPE 137 (262)
T ss_dssp EEEEETT------------CCCCCSSCEEEEEECSSEEEEEESCCE-EE---EECTTHHHHSHHHHHCCCBTTCTTCCHH
T ss_pred EEEecCC------------CCCCCCCeEEEEEEeCCCeEEEEECCE-EE---EEeCcccccchHHhcCCCCCCCCcCCHH
Confidence 9986421 223334 78999999999899999997 65 44431 235678999999999999999
Q ss_pred HHHHHHcCC---CcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCC--
Q 024924 159 EFTDSLSKK---KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEVDADC-- 233 (260)
Q Consensus 159 ~~~~~l~~~---~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~-- 233 (260)
+|.++++++ +++||.+||||++||||||||+|||||+|||||.+++++||++|+.+|+++|+.||++||+.||++
T Consensus 138 ~~~~~l~~~~~~~~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vl~~ai~~gGtt~~ 217 (262)
T 1k3x_A 138 VVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE 217 (262)
T ss_dssp HHHHHHHSTTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcCCcccccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999987 599999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ---CCCCcccEEeeeCCCCCCCcCCcccC
Q 024924 234 ---SRFPLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 234 ---~~~~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
+.+...|.||+|+|+ ||.+||++|.
T Consensus 218 ~~~~~~~~~l~VygR~g~-pC~~CG~~I~ 245 (262)
T 1k3x_A 218 NKHHGALFRFKVFHRDGE-PCERCGSIIE 245 (262)
T ss_dssp -----CCCCCSSTTCTTS-BCTTTCCBCE
T ss_pred CCCCCcceeEEEcCCCcC-CCCCCCCEeE
Confidence 456777899999997 9999999985
No 7
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=100.00 E-value=3.1e-66 Score=467.19 Aligned_cols=231 Identities=28% Similarity=0.427 Sum_probs=207.6
Q ss_pred CCChhHHHHHHHHHHhhcCCceEEEEEecCCCcccc-CC-ChhhHHHHhcCCeEEeEEEeeeEEEEecC-C-----CCcc
Q 024924 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVID-GV-SASDFEASVLGKAILSAHRKGKNLWLRLD-S-----PPFP 72 (260)
Q Consensus 1 MPElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~-~~-~~~~~~~~L~G~~i~~v~r~GK~l~~~~~-~-----~~~L 72 (260)
||||||||++++.|++.+.|++|++|++.. +++++ .+ ++++|.+.| |++|++|.|+||||+++|+ + +.+|
T Consensus 1 MPElPEVe~~~r~L~~~l~G~~I~~v~v~~-~~~l~~~~~~~~~f~~~L-G~~i~~v~rrGK~L~~~l~~~~~~~~~~~L 78 (295)
T 3vk8_A 1 MPQGPEVALTADILEKYFKGKTLEYIDFIS-GRYSKSEPEGYDDFIANL-PLKVSNVDTKGKFLWFELFDPNDKSNKWYI 78 (295)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCEEEEEEECS-SHHHHSCCBTHHHHHTTC-SEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEEEcC-CCceecCCCCHHHHHHhc-CCEEEEEEEeeeEEEEEecCCCcCCCCCEE
Confidence 999999999999999999999999999984 66665 33 378999999 9999999999999999995 4 5689
Q ss_pred EEeecceEEEEEeeccccccccccccCCCCCCCCceEEEEEEcCCceEEEecCCcceEEEEec-CCCCCCCccCCCCCCC
Q 024924 73 SFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLN-DPTSVPPISELGPDAL 151 (260)
Q Consensus 73 ~~HlgMtG~~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~-~~~~~~~l~~lGpDpl 151 (260)
++||||+|+|++. +++|.+++|.|+|+..|.|+|+|+||.+++++ +.+..+.+.+||||||
T Consensus 79 ~~HLgM~G~~~~~------------------~~~h~~v~l~l~~g~~l~f~D~R~fG~~~l~~~~~~~~~~l~~LGPDpL 140 (295)
T 3vk8_A 79 WNTFGLTGMWSLF------------------EAKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFL 140 (295)
T ss_dssp EEECTTTEEEESS------------------CCTTEEEEEEEGGGCEEEEEETTCCCEEEEESCHHHHHHHHTTSCCBTT
T ss_pred EEecCceEEEEEc------------------CCCeeEEEEEECCCCEEEEEecCcCCEEEEeCCchhhchhhhhcCCCCC
Confidence 9999999999873 14689999999999999999999999999997 2234556899999999
Q ss_pred -CCCCCHHHHHHHHcCCCcchhHHhhcCcc-cccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 024924 152 -LEPMTVDEFTDSLSKKKITIKALLLDQSY-ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIQSAVEV 229 (260)
Q Consensus 152 -~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~-iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai~~ 229 (260)
+++||.++ +++++++||.+||||++ ||||||||+|||||+|||||++++++||++|+.+|+++|++||++||+.
T Consensus 141 ~~~~f~~~~----l~~~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~ 216 (295)
T 3vk8_A 141 KNDDIDISK----IKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDS 216 (295)
T ss_dssp TCSCCCGGG----GGGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHH----HhccCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 77899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CC---------CCCCC--------------CcccEEeeeCCCCCCCcCCcccC
Q 024924 230 DA---------DCSRF--------------PLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 230 gg---------~~~~~--------------~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
|| .+|.| +..++||+|.|+ || |++|.
T Consensus 217 gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~g~-PC---G~~I~ 265 (295)
T 3vk8_A 217 NHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKD-PN---GNKVI 265 (295)
T ss_dssp SCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCSBC-TT---SCBCE
T ss_pred CCCcceecCCCCcccccccccccccccccccceEEEeCCCCC-CC---CCcEE
Confidence 98 22566 889999999997 87 98885
No 8
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=4.4e-59 Score=428.91 Aligned_cols=229 Identities=26% Similarity=0.315 Sum_probs=190.3
Q ss_pred CCChhHHHHHHHHHHhhcCCceEEEEEecCCCccccCCChhhHHHHhcCCeEEeEEEeeeEEEEecCC---------CCc
Q 024924 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDS---------PPF 71 (260)
Q Consensus 1 MPElPEVe~~~~~L~~~~~G~~I~~v~~~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~---------~~~ 71 (260)
||||||||++++.|++++.|++|..+... +.+++.+.+ +|. +.|++|.. .||||||+++|++ +.+
T Consensus 1 MPELPEVEtvrr~L~~~l~G~~I~~~v~~--~~vlr~p~~-~f~--~~G~~I~~-~RRGKyLll~l~~~~g~~~~~~~~~ 74 (364)
T 1tdh_A 1 MPEGPELHLASQFVNEACRALVFGGCVEK--SSVSRNPEV-PFE--SSAYRISA-SARGKELRLILSPLPGAQPQQEPLA 74 (364)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCCEEEECEE--CSSCCSCCC-CCE--EEEEEEEE-EEETTEEEEEEEECTTCSSCCCCEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEECc--ccccccCCc-chh--cCCCEEEE-EEEeeEEEEEccCccccccccCCce
Confidence 99999999999999999999999986543 334333322 453 48999966 8999999999975 147
Q ss_pred cEEeecceEEEEEeeccccccccccccCCCCCCCCceEEEEEEcCC---ceEEEecCCcceEEEEecCCCCCCCccCCCC
Q 024924 72 PSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG---LELSFTDKRRFAKVRLLNDPTSVPPISELGP 148 (260)
Q Consensus 72 L~~HlgMtG~~~~~~~~~~~~~~~~~~~~~~~p~k~~~l~l~l~~~---~~l~f~d~R~fg~~~l~~~~~~~~~l~~lGp 148 (260)
|++||||+|+|++.... .+++|.|++|.|+|+ ..|.|+|+|+||.+.+.+. .+.+|||
T Consensus 75 Lv~HLGMsG~l~v~~~~--------------~~~kh~hv~l~l~dgg~~~~L~f~D~RrFG~~~~~~~-----~~~~LGP 135 (364)
T 1tdh_A 75 LVFRFGMSGSFQLVPRE--------------ELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGK-----WQPGRGP 135 (364)
T ss_dssp EEEECTTTCEEEEEEGG--------------GCCTTEEEEEEBCSSSSCEEEEEECTTCCCEEEESSC-----CCTTCCC
T ss_pred EEEeCCceEEEEEecCC--------------CCCCceEEEEEECCCCcEEEEEEecCcEEEEEEecch-----hHhhcCC
Confidence 99999999999986431 246799999999986 7899999999999877632 4689999
Q ss_pred CCCCC--CCCHHHHHHHHcC--CCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHH--------------
Q 024924 149 DALLE--PMTVDEFTDSLSK--KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKE-------------- 210 (260)
Q Consensus 149 Dpl~~--~~~~~~~~~~l~~--~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~-------------- 210 (260)
|||++ .|+.+ +.+++.+ ++++||.+||||++||||||||+|||||+|||||.+++++||++
T Consensus 136 dPL~~~~~f~~~-~~~~l~~~~~~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~~~~~~~~~~~~~~~ 214 (364)
T 1tdh_A 136 CVLQEYQQFRES-VLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQ 214 (364)
T ss_dssp CTTTCHHHHHHH-HHHTTTSGGGGSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGGC-----CCSCHHH
T ss_pred CCCCCHHHHHHH-HHHHhhcccccccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHHHhccccccccchhh
Confidence 99983 22222 3344554 48999999999999999999999999999999999999999998
Q ss_pred ------HHHHHHHHHHHHHHHHHHcCCCC--------C--CCCcccEEeeeCCCCCCCcCCc
Q 024924 211 ------SCATLLKCIKEVIQSAVEVDADC--------S--RFPLEWLFHFRWGKKPGKVNGK 256 (260)
Q Consensus 211 ------e~~~L~~~i~~vL~~ai~~gg~~--------~--~~~~~~lv~~R~~~~~~~~~~~ 256 (260)
|+.+|+++|+.||.+||+.||++ + .|+..+.||+|.|+ +|.+|+.
T Consensus 215 k~~~~~e~~~L~~ai~~VL~~AI~~GGt~~~~~~G~~G~g~fq~~l~VYgR~G~-pc~~~~~ 275 (364)
T 1tdh_A 215 KIRTKLQNPDLLELCHSVPKEVVQLGGRGYGSESGEEDFAAFRAWLRCYGMPGM-SSLQDRH 275 (364)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHHHTTCTTSSCHHHHHHHHHHHCSSTTCTTC-EEEECTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcChhhhhhheeecCcCCC-cCcccCC
Confidence 99999999999999999999974 2 47788999999997 9998886
No 9
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=100.00 E-value=8.6e-53 Score=375.84 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=193.8
Q ss_pred ChhHHHHHHHHHHhhc-CCceEEEEEecCCCc--------------------cc-cCCChhhHHHHhcCCeEEeEEEeee
Q 024924 3 ELPEVEAARRAIEEHC-IGKKIVKSIIADDNK--------------------VI-DGVSASDFEASVLGKAILSAHRKGK 60 (260)
Q Consensus 3 ElPEVe~~~~~L~~~~-~G~~I~~v~~~~~~~--------------------~~-~~~~~~~~~~~L~G~~i~~v~r~GK 60 (260)
|+|....-.+.|+..+ .|+.|++|...-... .+ .+.+..+|.+.|.|++|++|.||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~G~~I~~v~RRGK 81 (287)
T 3w0f_A 2 EGPGCTLNGEKIRARVLPGQAVTGVRGTALQSLLGPAMSPAASLADVATSAAPMNAKDSGWKLLRLFNGYVYSGVETLGK 81 (287)
T ss_dssp CHHHHHHHHHHHHHHSCTTCBEEEEECGGGGGCC-----------------------CCSCGGGGGTTTCBEEEEEEETT
T ss_pred CCCccccchHHHHhhhcCCcEEEeccccccCCCCCCCCCccccccccccccccccCCccHHHHHHHCCCCEEEEEEeeee
Confidence 8899988888888654 899999998632000 00 1123458999999999999999999
Q ss_pred EEEEecCCCCccEEeecceEEEEEeeccccccccccccCCCCCC-CCceEEEEEEcCCceEEEecCCcceEEEEecCCC-
Q 024924 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWP-SKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPT- 138 (260)
Q Consensus 61 ~l~~~~~~~~~L~~HlgMtG~~~~~~~~~~~~~~~~~~~~~~~p-~k~~~l~l~l~~~~~l~f~d~R~fg~~~l~~~~~- 138 (260)
||+|+|++ .+|++||||+|+|++.+.. .+++ .+|.+++|.|+|+ .+.|+|+| +++++..+
T Consensus 82 yLll~l~~-~~Lv~HLGMsG~l~v~~~~------------~~~~~~kh~~v~l~l~dg-~l~f~D~r----~~l~~~~~~ 143 (287)
T 3w0f_A 82 ELFMYFGP-RALRIHFGMKGSILINPRE------------GENRAGASPALAVQLTRD-LICFYDSS----VELRNSVES 143 (287)
T ss_dssp EEEEEETT-EEEEEEEEEEEEEEESCTT------------CCC----CCSEEEEESSC-EEEEEEEE----EEEEEHHHH
T ss_pred EEEEEeCC-CEEEEEcCCcEEEEEeCCC------------CCCCCCCceEEEEEEcCC-eEEEEeCE----EEEEeCccc
Confidence 99999987 5899999999999996431 2233 4789999999988 78999984 66654221
Q ss_pred --CCCCccCCCCCCCCCCCCHHHHHHHHcC-CCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHH
Q 024924 139 --SVPPISELGPDALLEPMTVDEFTDSLSK-KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATL 215 (260)
Q Consensus 139 --~~~~l~~lGpDpl~~~~~~~~~~~~l~~-~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L 215 (260)
....+. |||||+++||.++|.+++++ ++++||.+||||++||||||||+|||||+|||||.+++++||++|+++|
T Consensus 144 ~~~~~~L~--gldPL~~~Fd~~~l~~~L~~~~~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L 221 (287)
T 3w0f_A 144 QQRVRVME--ELDICSPKFSFSRAESEVKKQGDRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHL 221 (287)
T ss_dssp HHHHHHHG--GGCTTCTTCCHHHHHHHHHTTCSSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHH
T ss_pred hhhccccc--CCCCCCCCCCHHHHHHHHhcCCcccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHH
Confidence 122233 88999999999999999998 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcccEEeeeCCCCCCCcCCcccC
Q 024924 216 LKCIKEVIQSAVEVDADCSRFPLEWLFHFRWGKKPGKVNGKIFM 259 (260)
Q Consensus 216 ~~~i~~vL~~ai~~gg~~~~~~~~~lv~~R~~~~~~~~~~~~~~ 259 (260)
+++|++||..++...|+.+.|+..|+||+|. ||.+||++|.
T Consensus 222 ~~ai~~Vl~~~~~~~g~~g~~~~~l~VYgR~---pC~~CGt~I~ 262 (287)
T 3w0f_A 222 VKMTRDFSILFYRCCKAGSAISKHCKVYKRP---NCDQCHSKIT 262 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGGCSSTTCS---BCTTTCCBCE
T ss_pred HHHHHHHHHHHHhccCCCCcccccEEEECCC---CCCCCCCEEE
Confidence 9999999998998877778899999999993 9999999985
No 10
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=97.48 E-value=0.00017 Score=55.50 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=44.0
Q ss_pred CcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHH
Q 024924 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219 (260)
Q Consensus 168 ~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i 219 (260)
+..|.-+| +.|-|||.-+|..||-.+||||..++++||++|+.+|.+.+
T Consensus 11 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 11 HKHAVIAL---TSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp SSCHHHHG---GGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred CCEeHhhH---hhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 45566666 67899999999999999999999999999999999999876
No 11
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=97.19 E-value=0.00041 Score=54.30 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=44.9
Q ss_pred CcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHH
Q 024924 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (260)
Q Consensus 168 ~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (260)
+..|.-+| +.|-|||.-+|.+||-.+||||..++++||++|+.+|.+.+..
T Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 12 NKRVDVAL---TYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp SSBHHHHH---TTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred CcEeeeeh---hccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH
Confidence 45556666 6789999999999999999999999999999999999988764
No 12
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=97.09 E-value=0.0051 Score=54.60 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCHHHHHHHHcCCCcchhHHhhcCcccccchhHHHHHH-HhhcCCCcccccCCCCHHHHHHHHHHHHHHHH
Q 024924 146 LGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEV-LYQAKIHPLQTAVSLSKESCATLLKCIKEVIQ 224 (260)
Q Consensus 146 lGpDpl~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGiGNiya~Ei-Lf~a~IhP~~~~~~Ls~~e~~~L~~~i~~vL~ 224 (260)
-+.||++ .+.+.|.+.+......+...|.. .+.|+|-.+|.|+ +++||+. +.+|+++++.+++
T Consensus 167 ~k~~p~~--~~~e~~~~~l~~~~~~l~~~l~~--~~~G~s~~la~El~~~ra~~~------------~~~l~~~~~~~~~ 230 (288)
T 3doa_A 167 HKINPYD--ITGAEVLKYIDFNAGNIAKQLLN--QFEGFSPLITNEIVSRRQFMT------------SSTLPEAFDEVMA 230 (288)
T ss_dssp CCBCGGG--CCHHHHGGGCCGGGCCHHHHHHH--HBTTCCHHHHHHHHTTSSSCS------------TTHHHHHHHHHHH
T ss_pred cCCCccc--CCHHHHHHHHhhCcchHHHHHHH--HcCCCCHHHHHHHHHHHcCCc------------HHHHHHHHHHHHH
Confidence 3568873 67888888876544557777764 7899999999999 9999852 5678888888887
Q ss_pred HHH
Q 024924 225 SAV 227 (260)
Q Consensus 225 ~ai 227 (260)
+..
T Consensus 231 ~~~ 233 (288)
T 3doa_A 231 ETK 233 (288)
T ss_dssp HHT
T ss_pred Hhh
Confidence 663
No 13
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.07 E-value=0.00081 Score=54.26 Aligned_cols=51 Identities=27% Similarity=0.295 Sum_probs=45.7
Q ss_pred CCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 167 ~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
.+..|.-+| +-|-|||.-+|..||-.++|||..++++||++|+.+|.+.|.
T Consensus 22 ~~k~v~~AL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 72 (152)
T 3iz6_M 22 GKQKIMFAL---TSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVH 72 (152)
T ss_dssp CSSBHHHHH---TTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHH
T ss_pred CCcEeHhhh---hhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHH
Confidence 466777777 569999999999999999999999999999999999988776
No 14
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=97.05 E-value=0.00099 Score=53.92 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=45.5
Q ss_pred CCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHH
Q 024924 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (260)
Q Consensus 167 ~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (260)
.+..|.-+| +-|-|||.-+|..||-.+||||..++++||++|+.+|.+.+..
T Consensus 24 ~~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 24 GKRITPIAL---TGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp CSSCHHHHH---TTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred CCCEEEEee---ecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhC
Confidence 355566666 6789999999999999999999999999999999999888764
No 15
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=97.00 E-value=0.00068 Score=54.35 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 167 ~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
.++.|.-+| +-|-|||.-+|..||-.+||||..++++||++|+.+|.+.|.
T Consensus 24 ~~k~v~~AL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 74 (146)
T 3u5c_S 24 GNIKIVYAL---TTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ 74 (146)
T ss_dssp SSSCTTTTG---GGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHT
T ss_pred CCcchHhhH---hhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHH
Confidence 355666666 568899999999999999999999999999999999988775
No 16
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.95 E-value=0.00073 Score=54.29 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=44.2
Q ss_pred CcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 168 ~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
+..|.-+| +-|-|||.-+|..||-.++|||..++++||++|+.+|.+.|.
T Consensus 18 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~ 67 (148)
T 3j20_O 18 NKQLRWAL---TAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILA 67 (148)
T ss_dssp SSCHHHHH---HHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHH
T ss_pred CCEehhhh---hhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHh
Confidence 55566666 468899999999999999999999999999999999988775
No 17
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=93.10 E-value=0.01 Score=47.28 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=42.0
Q ss_pred CCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHH
Q 024924 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKC 218 (260)
Q Consensus 167 ~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~ 218 (260)
.++.|.-+| ..|-|||.-+|.+||-.+|| |..++++||++|+.+|.+.
T Consensus 56 ~~K~v~~aL---t~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 56 NHKRVEYSL---QYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp CSSBTTTGG---GGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS
T ss_pred CCCEEEEee---eeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH
Confidence 355666666 67899999999999999999 9999999999999998765
No 18
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=93.02 E-value=0.55 Score=44.24 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHcCC-Cc-chhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHH
Q 024924 154 PMTVDEFTDSLSKK-KI-TIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV 222 (260)
Q Consensus 154 ~~~~~~~~~~l~~~-~~-~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~v 222 (260)
.++.+.+...+... .. .+..+|..+ +++||.-.|.|++=.+|++|..+..+|+.+++.+|+++++.+
T Consensus 236 G~~l~~~~~~~~~~~~~~~~~~fl~~~--f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 236 GVDREEIKILINNLKRDYTIKEFLVNE--FQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp GCCHHHHHHHSTTCSSCCBHHHHHTTS--SSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHhcCCCcchHHhhhcc--ccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 45777777777644 33 789999755 899999999999999999999999999999999999999963
No 19
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=84.67 E-value=1.9 Score=36.84 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=40.4
Q ss_pred HHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 163 ~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
.+..+|++++..|-. .+ ..++|=.+||+|.+++.+||.+|+.+|++.+.
T Consensus 201 ~F~~rrK~l~n~l~~--~~-------~~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 201 AFNQRRKTIRNSLGN--LF-------SVEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHTTTSBHHHHTTT--TC-------CHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHhh--hh-------hHHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 456789999999852 21 16788899999999999999999999998874
No 20
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=84.13 E-value=7.7 Score=36.97 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHcCC-Cc-chhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHHH
Q 024924 154 PMTVDEFTDSLSKK-KI-TIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV 222 (260)
Q Consensus 154 ~~~~~~~~~~l~~~-~~-~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~v 222 (260)
..+.+.+.+.+... .. .|.++|. +.+.++|.-.+++++=.+|+.|..+...|+.+++.+|+++++.+
T Consensus 235 Gi~~~~~l~~~~~~~~~~~l~~fl~--~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 235 GVDREEIKILINNLKRDYTIKEFLV--NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp GCCHHHHHHHHTTCSSCCBHHHHHH--TTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred ChhHHHHHHHHhccCCCceeHhhhc--CccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 45777777766544 34 7999997 56789999999999999999999988999999999999999953
No 21
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=83.10 E-value=2.2 Score=37.03 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=44.1
Q ss_pred HHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 163 ~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
.+..+|++++..|-. .|.+.-+..++|=.+||+|.+++.+||.+|+.+|++++.
T Consensus 215 ~F~~rrKtL~n~L~~----~~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 268 (271)
T 3fut_A 215 AFGKRRKTLLNALAA----AGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 (271)
T ss_dssp HTSSTTSCHHHHHHH----TTCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHh----hcCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHH
Confidence 356788999998843 134556678899999999999999999999999998764
No 22
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=81.87 E-value=2.4 Score=37.24 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHcCCCcchhHHhhcCcccccchhHHHHHHHhhc-----CCCc--ccccCCCCHHHHHHHHHHHHHHH
Q 024924 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQA-----KIHP--LQTAVSLSKESCATLLKCIKEVI 223 (260)
Q Consensus 163 ~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a-----~IhP--~~~~~~Ls~~e~~~L~~~i~~vL 223 (260)
.+..+|++++..|-.-....|+..-+..++|=.+ ||+| .+++.+||-+|+.+|.+++..-+
T Consensus 222 ~F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~~~ 289 (295)
T 3gru_A 222 IFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFL 289 (295)
T ss_dssp HHTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHHH
T ss_pred HHccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHHhh
Confidence 3567899999999754333445556777888888 8999 99999999999999998876433
No 23
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=74.72 E-value=2.5 Score=36.72 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=38.6
Q ss_pred HcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 164 l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
+..+|++++..|-. .. ..++|=.++|+|.+++.+||.+|+.+|.+++.
T Consensus 226 F~~rrK~l~n~L~~--~~-------~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 273 (279)
T 3uzu_A 226 FSQRRKMLRNTLGG--YR-------DLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 273 (279)
T ss_dssp GGGTTSBHHHHTGG--GT-------TTCCTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred HhccChHHHHHHHh--hc-------CHHHHHHCCcCCCCCceeCCHHHHHHHHHHHH
Confidence 56788999988843 11 15677778999999999999999999988764
No 24
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=74.31 E-value=2.1 Score=36.74 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.6
Q ss_pred HcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHH
Q 024924 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219 (260)
Q Consensus 164 l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i 219 (260)
+..+|++++..|-. .+ ..|.|-.+||+|.+++.+||.+|+.+|.+.+
T Consensus 208 F~~rrK~l~~~L~~--~~-------~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 208 FSYRRKTVGNALKK--LI-------NPSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHSTTSCHHHHTTT--TC-------CGGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHccChHHHHHHhh--hC-------CHHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 56789999998843 22 2366777999999999999999999998763
No 25
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=64.86 E-value=5.2 Score=33.60 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=34.3
Q ss_pred HcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 164 l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
+..+++++..-| ++|=.+||+|..++.+||.+|+.+|++++.
T Consensus 199 F~~rrk~l~~~~---------------~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~ 240 (244)
T 1qam_A 199 VNKEYKKIFTKN---------------QFNNSLKHAGIDDLNNISFEQFLSLFNSYK 240 (244)
T ss_dssp HTTCGGGTCCHH---------------HHHHHHHHHTCSCTTSCCHHHHHHHHHHHH
T ss_pred HhhccccccchH---------------HHHHHCCCCCCCCceeCCHHHHHHHHHHHH
Confidence 456777877755 346678999999999999999999998875
No 26
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=64.75 E-value=6 Score=33.56 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHcCCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 163 ~l~~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
.+..+|++++..|-. . +|-.++|+|.+++.+||-+|+.+|++.+.
T Consensus 201 ~F~~rrk~l~~~l~~--~-----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~ 245 (249)
T 3ftd_A 201 IFQNRRKVLRKKIPE--E-----------LLKEAGINPDARVEQLSLEDFFKLYRLIE 245 (249)
T ss_dssp HHSSTTSCGGGTSCH--H-----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHhCcChhHHHHHHH--H-----------HHHHCCCCCCCChhhCCHHHHHHHHHHHH
Confidence 356788888887733 1 67789999999999999999999998764
No 27
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=57.24 E-value=32 Score=30.95 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHc--CCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 153 EPMTVDEFTDSLS--KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 153 ~~~~~~~~~~~l~--~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
++++.+.+.+.++ ..+++|+.+|-+. +..-++..+|-.++|+ ..+++++|+++..+|...++
T Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~l~~~-----lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ 326 (401)
T 2gqf_A 263 PNHNVEEEINQAKQSSPKQMLKTILVRL-----LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIH 326 (401)
T ss_dssp SSSCHHHHHHHHHHHCTTSBHHHHHTTT-----SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhhcccccHHHHhhhh-----cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHh
Confidence 4567776655554 4588999998663 4577888889889998 57889999999999987775
No 28
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=52.17 E-value=29 Score=31.46 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHc--CCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHH
Q 024924 154 PMTVDEFTDSLS--KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (260)
Q Consensus 154 ~~~~~~~~~~l~--~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (260)
+.+.+.+..... ..+++++..|-. .+..-++..+|-.++| |.++++++++++..+|.+.++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 283 DIDIASILKGMRRANGRQAVQTALAD-----ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp TSCHHHHHHHHHHHTCSSBHHHHHTT-----TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhchhhhHHHHHHH-----HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 456665544432 467888888753 2566788889999999 9999999999999999988774
No 29
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=40.34 E-value=44 Score=28.73 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 189 ADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 189 a~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
..++|=.+||.| +++.+||.+++.+|..++.
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~ 290 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFN 290 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHH
Confidence 367788899987 6899999999999998865
No 30
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=39.96 E-value=92 Score=28.02 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=46.4
Q ss_pred CCCHHHHHHHH----c-CCCcchhHHhhcCcccccchhHHHHHHHhhcCCCcccccCCCCHHHHHHHHHHHHH
Q 024924 154 PMTVDEFTDSL----S-KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (260)
Q Consensus 154 ~~~~~~~~~~l----~-~~~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (260)
.++.+.+.+.+ . .++.+++..|. .++ -.-+..+++-.++|+|..+.+++++++.++|...++.
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~---~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 301 EENSEQLFQRMLKQMKEDPKKGIKNVLK--GYV---PERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp TSCHHHHHHHHHHHHTTSTTSBHHHHTT--TSS---CHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHhcc--ccC---hHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 45677776655 2 35778998873 233 3446778888889999999999999999887776654
No 31
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=36.48 E-value=47 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 024924 190 DEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (260)
Q Consensus 190 ~EiLf~a~IhP~~~~~~Ls~~e~~~L~~~i~ 220 (260)
.++|-.+||. .+++.+||.+|+.+|.+++.
T Consensus 249 ~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~ 278 (285)
T 1zq9_A 249 QQILTSTGFS-DKRARSMDIDDFIRLLHGFN 278 (285)
T ss_dssp HHHHHHHTCT-TCBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCC-CCChhhCCHHHHHHHHHHHH
Confidence 5788899997 67999999999999998763
No 32
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=29.72 E-value=70 Score=22.48 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeC
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRW 246 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~ 246 (260)
..||..++..+++++.+++.+++..|+.- ..| -.|-+..|.
T Consensus 15 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gf-G~F~v~~r~ 57 (94)
T 1owf_B 15 SHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGF-GSFSLHYRA 57 (94)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCc-EEEEEEEEc
Confidence 46899999999999999999999999864 233 345555553
No 33
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=29.04 E-value=73 Score=22.17 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeCCCCCCC--cCCccc
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRWGKKPGK--VNGKIF 258 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~~~~~~~--~~~~~~ 258 (260)
..||..++..+++++.+++.+++..|+.- ..| -.|-+..|... .+. .+|+.|
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gf-G~F~v~~r~~R-~grnP~Tge~i 69 (90)
T 1mul_A 14 AELSKTQAKAALESTLAAITESLKEGDAVQLVGF-GTFKVNHRAER-TGRNPQTGKEI 69 (90)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEEEECC-------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCC-eEEEEEEecce-eeeCCCCCCEE
Confidence 46899999999999999999999999864 233 34555555432 332 356544
No 34
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=27.83 E-value=75 Score=22.14 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeC
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRW 246 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~ 246 (260)
..||..++..+++++.+++.+++..|+.- ..| -.|-+..|.
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gf-G~F~v~~r~ 56 (90)
T 2o97_B 14 ADISKAAAGRALDAIIASVTESLKEGDDVALVGF-GTFAVKERA 56 (90)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEECCC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHCCCeEEECCC-EEEEEEEec
Confidence 46899999999999999999999999864 233 345555553
No 35
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=26.46 E-value=82 Score=22.15 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeCCCCCCC--cCCccc
Q 024924 206 SLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRWGKKPGK--VNGKIF 258 (260)
Q Consensus 206 ~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~~~~~~~--~~~~~~ 258 (260)
.||..++..+++++.+++.+++..|+.- ..| -.|-+..|... .+. .+|+.|
T Consensus 18 ~lsk~~~~~~v~~~~~~i~~~L~~g~~V~l~gf-G~F~v~~r~~R-~grNP~Tge~i 72 (93)
T 3rhi_A 18 EISQKEATVVVQTVVESITNTLAAGEKVQLIGF-GTFEVRERAAR-TGRNPQTGEEM 72 (93)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEEEECCE-EEECTTTSCEE
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC-EEEEEEEEcCe-eeeCCCCCCEE
Confidence 5899999999999999999999999864 233 34556665432 232 456554
No 36
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=26.38 E-value=83 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDADC 233 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~ 233 (260)
..||..++..+++++.+++.+++..|++-
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V 42 (90)
T 1b8z_A 14 AGAKKKDVKLILDTILETITEALAKGEKV 42 (90)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 36899999999999999999999999864
No 37
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=24.95 E-value=25 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccEEeeeCCCCCCCcCCccc
Q 024924 206 SLSKESCATLLKCIKEVIQSAVEVDADCSRFPLEWLFHFRWGKKPGKVNGKIF 258 (260)
Q Consensus 206 ~Ls~~e~~~L~~~i~~vL~~ai~~gg~~~~~~~~~lv~~R~~~~~~~~~~~~~ 258 (260)
..|++|++..+...+. .-++..||-..|...++-+.+.|.=.|..||+++
T Consensus 4 ~~s~~ewr~~Ltp~qy---~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pL 53 (146)
T 3hcg_A 4 KPSDAELKRTLTEEQY---QVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPL 53 (146)
T ss_dssp CCCHHHHHHHSBHHHH---HHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEE
T ss_pred CCCHHHHHhhCCHHHH---HHHHHcCCCCCCCCCCcCCCCCEEEEecCCCccc
Confidence 4688888887766553 2234567766776666666677777888999886
No 38
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=24.72 E-value=92 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeC
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRW 246 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~ 246 (260)
..||..++..+++++.+++.+++..|+.- ..| -.|-+..|.
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gf-G~F~v~~r~ 56 (94)
T 1p71_A 14 ASVTKKQADAVLTAALETIIEAVSSGDKVTLVGF-GSFESRERK 56 (94)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEEEEC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEecCC-EEEEEEEEc
Confidence 36899999999999999999999999864 233 345555553
No 39
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=24.16 E-value=48 Score=21.51 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=24.6
Q ss_pred cCCeEEeEEEeeeEEEEecCCCCccEEeecceEEEEEe
Q 024924 48 LGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIK 85 (260)
Q Consensus 48 ~G~~i~~v~r~GK~l~~~~~~~~~L~~HlgMtG~~~~~ 85 (260)
.=.+|..|+|.||.+-|..+++. |-||+=-+.
T Consensus 16 diskikkvwrvgkmisftyddgn------gktgrgavs 47 (64)
T 1c8c_A 16 DISKIKKVWRVGKMISFTYDEGG------GKTGRGAVS 47 (64)
T ss_dssp EGGGEEEEEEETTEEEEEEECGG------GCEEEEEEE
T ss_pred cHHHHHHHHhhcceEEEEEecCC------Ccccccccc
Confidence 33579999999999999998743 667765553
No 40
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=24.13 E-value=88 Score=22.30 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 024924 206 SLSKESCATLLKCIKEVIQSAVEVDADC 233 (260)
Q Consensus 206 ~Ls~~e~~~L~~~i~~vL~~ai~~gg~~ 233 (260)
.||..++..+++++..++.+++..|+..
T Consensus 15 ~lsk~~~~~~l~~~~~~i~~~L~~G~~V 42 (99)
T 1exe_A 15 GLTQVSVSKMLASFEKIITETVAKGDKV 42 (99)
T ss_dssp CSCCTTHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 5788899999999999999999999864
No 41
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=22.95 E-value=37 Score=27.95 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=25.5
Q ss_pred HHhhcCCCcccccCCCCHHHHHHHHHHHHH
Q 024924 192 VLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (260)
Q Consensus 192 iLf~a~IhP~~~~~~Ls~~e~~~L~~~i~~ 221 (260)
++=.+++.|..++.+|+.+++.+|++....
T Consensus 211 ~~~~~~~~~~~r~~~l~~~~f~~l~~~~~~ 240 (245)
T 1yub_A 211 FHQAMKHAKVNNLSTITYEQVLSIFNSYLL 240 (245)
T ss_dssp HHHHHHHTTCSCTTSCCSHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 455678899999999999999999987653
No 42
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=22.85 E-value=1e+02 Score=21.83 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeC
Q 024924 206 SLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRW 246 (260)
Q Consensus 206 ~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~ 246 (260)
.||..++..+++++.+++.+++..|++- ..| -.|-+..|.
T Consensus 17 ~ls~~~~~~vl~~~~~~i~~~L~~G~~V~l~gf-G~F~v~~r~ 58 (99)
T 1owf_A 17 GLSKRDAKELVELFFEEIRRALENGEQVKLSGF-GNFDLRDKN 58 (99)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeEEecCC-EEEEEEEec
Confidence 5899999999999999999999999864 233 345555553
No 43
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=22.76 E-value=1e+02 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeC
Q 024924 206 SLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRW 246 (260)
Q Consensus 206 ~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~ 246 (260)
.||..++..+++++.+++.+++..|+.- ..| -.|-+..|.
T Consensus 15 ~lsk~~~~~~l~~~~~~i~~~L~~g~~V~l~gf-G~F~v~~r~ 56 (99)
T 3c4i_A 15 GSDRRQATAAVENVVDTIVRAVHKGDSVTITGF-GVFEQRRRA 56 (99)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTT-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCEEEECCC-EEEEEEEec
Confidence 5899999999999999999999999864 233 345555553
No 44
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.88 E-value=97 Score=20.25 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDA 231 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg 231 (260)
..||++|.. +|...|.+||+.|-
T Consensus 3 d~lt~eq~~----aILkaLdeaIe~GP 25 (57)
T 3fxd_A 3 DQLSDEQKE----TILKALNDAIEKGP 25 (57)
T ss_dssp -CCCHHHHH----HHHHHHHHHHHHSC
T ss_pred chhhHHHHH----HHHHHHHHHHHcCC
Confidence 357888754 55566778999885
No 45
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=20.47 E-value=1.2e+02 Score=21.91 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcccEEeeeCCCCCCC--cCCccc
Q 024924 205 VSLSKESCATLLKCIKEVIQSAVEVDADC--SRFPLEWLFHFRWGKKPGK--VNGKIF 258 (260)
Q Consensus 205 ~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~--~~~~~~~lv~~R~~~~~~~--~~~~~~ 258 (260)
..||..++..+++++.+++.+++..|+.- ..| -.|-+..|.....+. .+|+.|
T Consensus 27 ~~lsk~~~~~vl~~~~~~i~~~L~~G~~V~l~gf-GtF~v~~r~aR~~grNP~Tge~i 83 (108)
T 2np2_A 27 LKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSF-GTFEVRKRKGRLNARNPQTGEYV 83 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTT-EEEEEEEECCBSSCBCTTTCCBC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHCCCeEEecCc-EEEEEEEecCccccCCCCCCcEE
Confidence 56899999999999999999999999854 334 345565553310232 556654
No 46
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=20.28 E-value=1.5e+02 Score=17.56 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHH
Q 024924 198 IHPLQTAVSLSKESCATLLKCIKEVIQSAV 227 (260)
Q Consensus 198 IhP~~~~~~Ls~~e~~~L~~~i~~vL~~ai 227 (260)
.-|..++.+-+.+|+.+-++++++.+..-.
T Consensus 3 ~kP~~PG~dA~~Eela~Y~~~LrhYiNlvT 32 (36)
T 2bf9_A 3 SQPTYPGDDAPVEDLIRFYNDLQQYLNVVT 32 (36)
T ss_dssp CCCCCCCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 458889999999999999999999887543
Done!