Query 024925
Match_columns 260
No_of_seqs 136 out of 1209
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02429 triosephosphate isome 100.0 4.3E-77 9.3E-82 554.0 25.1 251 8-259 8-270 (315)
2 KOG1643 Triosephosphate isomer 100.0 2.3E-76 5.1E-81 517.3 20.1 208 52-259 2-209 (247)
3 PRK14567 triosephosphate isome 100.0 2.4E-72 5.3E-77 509.6 22.4 205 54-259 2-209 (253)
4 PRK00042 tpiA triosephosphate 100.0 4.1E-72 8.9E-77 507.5 22.4 206 53-259 1-210 (250)
5 PRK14566 triosephosphate isome 100.0 4.7E-72 1E-76 509.3 22.5 207 52-259 3-219 (260)
6 PTZ00333 triosephosphate isome 100.0 4.4E-72 9.6E-77 508.6 22.3 208 52-259 3-214 (255)
7 PF00121 TIM: Triosephosphate 100.0 1.1E-72 2.4E-77 509.6 18.2 205 55-259 1-209 (244)
8 PLN02561 triosephosphate isome 100.0 8E-72 1.7E-76 506.4 22.7 208 52-259 2-211 (253)
9 cd00311 TIM Triosephosphate is 100.0 1.3E-71 2.9E-76 502.1 22.3 204 55-259 1-206 (242)
10 PRK15492 triosephosphate isome 100.0 1.8E-71 4E-76 505.8 23.1 207 52-259 1-219 (260)
11 COG0149 TpiA Triosephosphate i 100.0 3.2E-70 6.9E-75 494.0 22.3 206 52-259 1-209 (251)
12 PRK13962 bifunctional phosphog 100.0 2E-68 4.4E-73 534.2 22.4 209 51-259 395-606 (645)
13 PRK14905 triosephosphate isome 100.0 7.5E-68 1.6E-72 500.2 22.6 206 53-259 3-220 (355)
14 PRK14565 triosephosphate isome 100.0 3.1E-67 6.7E-72 472.4 21.8 184 54-241 2-187 (237)
15 TIGR00419 tim triosephosphate 100.0 2.2E-59 4.8E-64 413.6 18.5 174 56-259 1-176 (205)
16 PRK04302 triosephosphate isome 100.0 1.5E-40 3.2E-45 294.6 17.8 165 52-240 1-170 (223)
17 PRK13111 trpA tryptophan synth 94.3 0.19 4.1E-06 46.3 7.9 87 128-240 109-198 (258)
18 PRK11840 bifunctional sulfur c 94.3 0.13 2.7E-06 49.2 6.8 100 116-236 140-247 (326)
19 PLN02591 tryptophan synthase 92.2 0.71 1.5E-05 42.4 8.0 83 129-240 99-187 (250)
20 cd04729 NanE N-acetylmannosami 91.0 4.9 0.00011 35.3 11.9 100 67-177 26-131 (219)
21 PRK13125 trpA tryptophan synth 83.3 20 0.00043 32.3 11.3 149 64-241 14-183 (244)
22 PF01183 Glyco_hydro_25: Glyco 77.7 16 0.00034 31.0 8.2 112 122-247 5-121 (181)
23 PRK08057 cobalt-precorrin-6x r 76.3 4.2 9.2E-05 37.2 4.6 53 119-180 173-225 (248)
24 PRK01060 endonuclease IV; Prov 74.0 45 0.00098 29.8 10.7 28 208-235 139-166 (281)
25 cd04728 ThiG Thiazole synthase 68.6 20 0.00044 33.2 7.1 93 117-231 67-168 (248)
26 PRK09997 hydroxypyruvate isome 68.3 32 0.0007 30.6 8.3 78 157-235 86-166 (258)
27 PRK00208 thiG thiazole synthas 67.7 22 0.00047 33.0 7.1 91 117-231 67-168 (250)
28 TIGR03234 OH-pyruv-isom hydrox 67.1 17 0.00036 32.2 6.2 18 158-175 86-103 (254)
29 cd06412 GH25_CH-type CH-type ( 66.5 87 0.0019 27.1 12.6 49 122-173 8-56 (199)
30 PF14488 DUF4434: Domain of un 64.0 94 0.002 26.6 12.2 110 129-246 26-153 (166)
31 cd06542 GH18_EndoS-like Endo-b 63.6 67 0.0015 28.5 9.4 87 154-241 49-141 (255)
32 TIGR00715 precor6x_red precorr 61.2 10 0.00022 34.9 3.7 107 60-180 108-233 (256)
33 cd06413 GH25_muramidase_1 Unch 61.1 1.1E+02 0.0023 26.3 12.2 48 122-172 10-57 (191)
34 TIGR00433 bioB biotin syntheta 60.8 1.2E+02 0.0026 27.4 10.7 108 121-242 119-240 (296)
35 cd06525 GH25_Lyc-like Lyc mura 60.7 1.1E+02 0.0023 26.1 12.6 48 122-172 7-54 (184)
36 COG2730 BglC Endoglucanase [Ca 59.0 91 0.002 30.3 10.1 131 108-243 55-217 (407)
37 cd04724 Tryptophan_synthase_al 58.5 1.2E+02 0.0027 27.2 10.2 87 129-240 97-185 (242)
38 TIGR00262 trpA tryptophan synt 56.8 1.4E+02 0.0031 27.2 10.5 47 129-183 108-155 (256)
39 smart00518 AP2Ec AP endonuclea 55.8 54 0.0012 29.2 7.4 13 84-96 25-37 (273)
40 cd00377 ICL_PEPM Members of th 54.8 60 0.0013 29.4 7.6 85 54-148 142-231 (243)
41 PRK09856 fructoselysine 3-epim 54.1 1E+02 0.0022 27.4 8.9 106 129-235 53-169 (275)
42 PRK13209 L-xylulose 5-phosphat 53.9 38 0.00083 30.3 6.2 74 156-233 99-173 (283)
43 PF03982 DAGAT: Diacylglycerol 53.7 47 0.001 31.3 6.9 84 163-248 173-282 (297)
44 cd06416 GH25_Lys1-like Lys-1 i 53.2 1.5E+02 0.0032 25.5 9.9 48 122-172 8-55 (196)
45 cd01137 PsaA Metal binding pro 51.5 46 0.001 30.6 6.4 49 192-240 162-225 (287)
46 cd02905 Macro_GDAP2_like Macro 51.2 25 0.00054 29.3 4.2 29 210-241 110-140 (140)
47 COG0614 FepB ABC-type Fe3+-hyd 50.2 1.5E+02 0.0033 26.4 9.5 40 110-149 221-260 (319)
48 PF02571 CbiJ: Precorrin-6x re 49.4 30 0.00065 31.7 4.8 107 59-181 110-230 (249)
49 PF01261 AP_endonuc_2: Xylose 48.9 53 0.0012 27.1 5.9 81 155-236 70-153 (213)
50 cd03174 DRE_TIM_metallolyase D 47.5 2E+02 0.0043 25.3 15.6 156 66-242 17-189 (265)
51 cd00861 ProRS_anticodon_short 46.1 36 0.00078 25.1 4.0 42 129-180 24-65 (94)
52 PRK08508 biotin synthase; Prov 46.1 1.6E+02 0.0034 27.1 9.0 107 124-242 97-218 (279)
53 PF03129 HGTP_anticodon: Antic 46.0 37 0.0008 25.2 4.1 43 129-181 22-64 (94)
54 cd00331 IGPS Indole-3-glycerol 46.0 2E+02 0.0043 24.9 10.3 47 128-180 86-132 (217)
55 cd07938 DRE_TIM_HMGL 3-hydroxy 45.8 2.4E+02 0.0053 25.9 10.6 40 162-201 79-121 (274)
56 PRK13813 orotidine 5'-phosphat 44.2 1.3E+02 0.0029 26.0 7.9 33 129-165 178-211 (215)
57 TIGR03772 anch_rpt_subst ancho 44.2 67 0.0014 32.4 6.7 51 190-240 354-419 (479)
58 cd06419 GH25_muramidase_2 Unch 44.0 2.2E+02 0.0047 24.8 12.0 48 122-172 15-62 (190)
59 PRK06934 flavodoxin; Provision 43.8 23 0.00049 32.2 3.0 57 156-218 74-141 (221)
60 cd00019 AP2Ec AP endonuclease 41.9 1.1E+02 0.0023 27.5 7.1 29 208-236 136-164 (279)
61 COG0351 ThiD Hydroxymethylpyri 41.2 43 0.00093 31.3 4.5 62 168-240 33-97 (263)
62 PRK09545 znuA high-affinity zi 40.2 74 0.0016 29.8 6.0 47 192-240 190-251 (311)
63 cd06523 GH25_PlyB-like PlyB is 40.1 68 0.0015 27.4 5.3 48 122-172 7-55 (177)
64 cd02904 Macro_H2A_like Macro d 40.0 1E+02 0.0023 27.1 6.6 33 210-245 130-164 (186)
65 COG0635 HemN Coproporphyrinoge 39.8 3.8E+02 0.0082 26.4 14.6 157 55-243 91-263 (416)
66 PF02449 Glyco_hydro_42: Beta- 39.8 31 0.00067 32.8 3.4 46 128-177 15-68 (374)
67 PRK05692 hydroxymethylglutaryl 39.8 3.1E+02 0.0068 25.4 10.8 40 163-202 86-128 (287)
68 cd00851 MTH1175 This uncharact 39.0 59 0.0013 24.4 4.3 46 124-181 51-96 (103)
69 cd06522 GH25_AtlA-like AtlA is 38.5 69 0.0015 27.6 5.2 48 122-172 8-58 (192)
70 TIGR01163 rpe ribulose-phospha 38.4 2.5E+02 0.0053 23.8 11.0 89 129-242 72-160 (210)
71 cd04740 DHOD_1B_like Dihydroor 37.9 1.6E+02 0.0034 26.9 7.7 27 218-244 258-284 (296)
72 cd06414 GH25_LytC-like The Lyt 37.4 80 0.0017 27.1 5.4 51 122-172 8-58 (191)
73 PF01301 Glyco_hydro_35: Glyco 36.7 59 0.0013 30.7 4.7 49 129-177 30-84 (319)
74 PF02579 Nitro_FeMo-Co: Dinitr 36.3 49 0.0011 24.4 3.4 50 120-181 37-86 (94)
75 PRK11320 prpB 2-methylisocitra 35.8 78 0.0017 29.8 5.4 63 84-150 178-241 (292)
76 cd06415 GH25_Cpl1-like Cpl-1 l 35.6 64 0.0014 27.9 4.5 47 122-172 8-54 (196)
77 cd06524 GH25_YegX-like YegX is 35.4 77 0.0017 27.2 4.9 48 122-172 7-58 (194)
78 TIGR00097 HMP-P_kinase phospho 35.3 69 0.0015 28.5 4.8 42 188-240 51-92 (254)
79 PRK00230 orotidine 5'-phosphat 34.6 3.1E+02 0.0068 24.4 8.9 77 84-166 147-227 (230)
80 TIGR03699 mena_SCO4550 menaqui 34.6 3.8E+02 0.0082 25.0 9.8 108 126-242 143-267 (340)
81 PF02836 Glyco_hydro_2_C: Glyc 34.1 83 0.0018 28.7 5.2 94 129-238 42-146 (298)
82 PF07745 Glyco_hydro_53: Glyco 34.0 82 0.0018 30.3 5.3 44 128-177 29-79 (332)
83 cd02907 Macro_Af1521_BAL_like 33.7 1.4E+02 0.0031 25.2 6.3 32 210-244 115-148 (175)
84 PRK04531 acetylglutamate kinas 33.6 81 0.0018 30.9 5.3 78 130-213 81-170 (398)
85 PRK12616 pyridoxal kinase; Rev 33.5 75 0.0016 28.7 4.8 43 187-240 57-99 (270)
86 TIGR02317 prpB methylisocitrat 33.1 78 0.0017 29.7 4.9 62 84-149 173-235 (285)
87 PTZ00493 phosphomethylpyrimidi 32.8 77 0.0017 30.3 4.9 43 187-240 56-98 (321)
88 cd00599 GH25_muramidase Endo-N 32.4 3E+02 0.0065 23.0 10.7 105 122-246 7-118 (186)
89 PRK08208 coproporphyrinogen II 32.4 4.8E+02 0.01 25.4 11.6 110 129-244 144-263 (430)
90 COG2247 LytB Putative cell wal 32.1 1.1E+02 0.0023 29.8 5.6 49 128-181 92-144 (337)
91 PLN02746 hydroxymethylglutaryl 31.8 3.5E+02 0.0075 26.2 9.2 39 163-201 128-169 (347)
92 cd01019 ZnuA Zinc binding prot 31.8 1.5E+02 0.0031 27.3 6.4 34 207-240 179-227 (286)
93 TIGR02320 PEP_mutase phosphoen 31.4 2.6E+02 0.0057 26.2 8.1 85 54-150 152-247 (285)
94 TIGR03821 AblA_like_1 lysine-2 31.3 3.6E+02 0.0077 25.5 9.1 112 122-244 190-303 (321)
95 cd01018 ZntC Metal binding pro 30.9 1.7E+02 0.0036 26.5 6.6 82 155-240 117-216 (266)
96 cd02908 Macro_Appr_pase_like M 30.9 2.1E+02 0.0044 24.0 6.7 31 210-243 108-140 (165)
97 cd00598 GH18_chitinase-like Th 30.9 3.2E+02 0.007 22.9 8.1 85 154-242 47-138 (210)
98 PRK00278 trpC indole-3-glycero 30.8 1.8E+02 0.0039 26.5 6.8 74 93-181 99-172 (260)
99 CHL00200 trpA tryptophan synth 30.0 4.4E+02 0.0096 24.3 9.4 44 129-180 112-155 (263)
100 PRK08883 ribulose-phosphate 3- 30.0 3.9E+02 0.0085 23.8 8.7 69 129-218 74-142 (220)
101 TIGR00542 hxl6Piso_put hexulos 29.9 2.7E+02 0.0058 24.9 7.7 12 131-142 102-113 (279)
102 COG2099 CobK Precorrin-6x redu 29.8 2.7E+02 0.0058 26.1 7.7 103 58-174 108-227 (257)
103 KOG3798 Predicted Zn-dependent 29.8 40 0.00087 32.0 2.3 29 210-239 263-291 (343)
104 PRK13210 putative L-xylulose 5 29.5 2E+02 0.0044 25.4 6.9 11 66-76 17-27 (284)
105 TIGR00538 hemN oxygen-independ 29.4 5.5E+02 0.012 25.1 11.1 107 129-244 154-278 (455)
106 PF01297 TroA: Periplasmic sol 29.0 1.7E+02 0.0037 25.9 6.3 47 192-240 137-198 (256)
107 PF10137 TIR-like: Predicted n 28.6 2.2E+02 0.0047 23.5 6.3 29 140-176 2-31 (125)
108 cd07942 DRE_TIM_LeuA Mycobacte 27.8 3E+02 0.0065 25.7 7.8 54 162-215 81-147 (284)
109 TIGR01037 pyrD_sub1_fam dihydr 27.7 1.7E+02 0.0037 26.8 6.1 27 218-244 261-287 (300)
110 PLN02783 diacylglycerol O-acyl 27.6 3.2E+02 0.0068 25.8 8.0 83 163-247 203-300 (315)
111 cd07945 DRE_TIM_CMS Leptospira 27.5 4.5E+02 0.0097 24.3 8.9 102 128-240 79-188 (280)
112 TIGR03551 F420_cofH 7,8-dideme 27.2 5E+02 0.011 24.4 9.4 105 129-242 144-269 (343)
113 cd00860 ThrRS_anticodon ThrRS 27.1 1.8E+02 0.004 20.8 5.2 42 129-180 21-62 (91)
114 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.7 5E+02 0.011 23.7 11.4 161 60-241 13-191 (275)
115 COG1217 TypA Predicted membran 26.5 72 0.0016 32.8 3.6 74 121-204 79-152 (603)
116 PRK13347 coproporphyrinogen II 26.0 6.4E+02 0.014 24.8 12.5 108 128-244 154-279 (453)
117 PRK06294 coproporphyrinogen II 25.7 5.9E+02 0.013 24.3 12.3 110 129-244 106-231 (370)
118 PRK09249 coproporphyrinogen II 25.7 6.4E+02 0.014 24.7 11.2 108 129-244 154-278 (453)
119 COG3370 Uncharacterized protei 25.6 31 0.00067 28.4 0.7 40 136-177 36-75 (113)
120 cd01017 AdcA Metal binding pro 25.6 2.1E+02 0.0046 26.0 6.3 47 192-240 158-219 (282)
121 PRK12412 pyridoxal kinase; Rev 25.5 1.3E+02 0.0027 27.2 4.8 41 188-239 56-96 (268)
122 PF02679 ComA: (2R)-phospho-3- 25.0 87 0.0019 28.9 3.6 70 129-202 90-159 (244)
123 PRK10799 metal-binding protein 24.9 44 0.00095 30.3 1.7 53 130-198 180-232 (247)
124 cd01016 TroA Metal binding pro 24.8 2.3E+02 0.005 25.8 6.4 49 192-240 146-209 (276)
125 cd08205 RuBisCO_IV_RLP Ribulos 24.8 6.1E+02 0.013 24.5 9.6 159 53-239 197-366 (367)
126 cd00858 GlyRS_anticodon GlyRS 24.5 2E+02 0.0044 22.7 5.3 41 129-180 48-88 (121)
127 PF01497 Peripla_BP_2: Peripla 24.3 1E+02 0.0022 26.3 3.7 50 90-145 154-203 (238)
128 PF14871 GHL6: Hypothetical gl 24.0 1.9E+02 0.004 24.0 5.1 45 129-176 6-64 (132)
129 cd00952 CHBPH_aldolase Trans-o 23.6 5.8E+02 0.013 23.7 9.0 99 132-234 38-160 (309)
130 COG0502 BioB Biotin synthase a 23.3 1.4E+02 0.0031 28.8 4.9 55 129-183 147-210 (335)
131 KOG4131 Ngg1-interacting facto 23.2 82 0.0018 29.4 3.1 43 123-169 211-257 (272)
132 COG1609 PurR Transcriptional r 23.2 5.8E+02 0.013 23.7 8.9 103 69-180 72-185 (333)
133 PRK10878 hypothetical protein; 23.1 81 0.0018 23.8 2.5 25 216-241 40-64 (72)
134 PRK06256 biotin synthase; Vali 23.1 6.1E+02 0.013 23.5 9.8 101 129-242 155-269 (336)
135 TIGR03217 4OH_2_O_val_ald 4-hy 22.2 6.8E+02 0.015 23.8 16.4 153 62-241 18-185 (333)
136 cd00738 HGTP_anticodon HGTP an 22.0 2.8E+02 0.006 19.9 5.3 42 129-180 24-65 (94)
137 cd01985 ETF The electron trans 22.0 2.4E+02 0.0053 23.6 5.6 38 128-172 83-120 (181)
138 PRK07028 bifunctional hexulose 21.6 2.5E+02 0.0055 27.3 6.4 45 129-177 124-169 (430)
139 cd02871 GH18_chitinase_D-like 21.6 5.7E+02 0.012 23.7 8.5 87 154-246 58-146 (312)
140 PLN02954 phosphoserine phospha 21.3 1.2E+02 0.0026 25.8 3.7 13 169-181 168-180 (224)
141 COG0561 Cof Predicted hydrolas 21.2 4.5E+02 0.0098 23.1 7.5 85 136-240 9-98 (264)
142 TIGR01689 EcbF-BcbF capsule bi 21.0 2.8E+02 0.0061 22.8 5.6 78 136-218 7-90 (126)
143 cd00562 NifX_NifB This CD repr 20.9 2.5E+02 0.0054 20.8 5.0 43 123-177 48-90 (102)
144 PRK14072 6-phosphofructokinase 20.9 2.2E+02 0.0047 28.1 5.7 47 132-181 67-115 (416)
145 TIGR00238 KamA family protein. 20.8 1.8E+02 0.0039 27.5 5.0 109 123-243 208-319 (331)
146 TIGR03572 WbuZ glycosyl amidat 20.7 1.6E+02 0.0034 25.9 4.3 48 130-180 160-207 (232)
147 TIGR01618 phage_P_loop phage n 20.4 1.4E+02 0.0031 26.9 4.0 106 63-175 61-178 (220)
148 COG1349 GlpR Transcriptional r 20.4 70 0.0015 29.1 2.1 39 143-181 66-104 (253)
149 COG1519 KdtA 3-deoxy-D-manno-o 20.4 5.1E+02 0.011 26.0 8.1 99 129-241 139-258 (419)
150 PLN02746 hydroxymethylglutaryl 20.2 7.9E+02 0.017 23.7 9.7 158 61-241 61-239 (347)
151 CHL00201 syh histidine-tRNA sy 20.0 1.9E+02 0.0041 28.3 5.1 21 158-178 364-384 (430)
152 PF00290 Trp_syntA: Tryptophan 20.0 7E+02 0.015 23.1 9.7 87 129-241 108-197 (259)
153 COG1027 AspA Aspartate ammonia 20.0 91 0.002 31.2 2.8 26 217-242 231-256 (471)
No 1
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=4.3e-77 Score=553.97 Aligned_cols=251 Identities=73% Similarity=1.167 Sum_probs=227.4
Q ss_pred cccccCCcccCCCCCCCCcccccc------------cccccCCCCCCcchhhhhhhcCcceEEeecccccCHHHHHHHHH
Q 024925 8 NCAQFSGLRRSSPTQSYSQHVNSH------------LRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVS 75 (260)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~m~~~rk~~IigNWKmn~t~~~~~~l~~ 75 (260)
..++|.|+||.+++...+++..++ .+..++ .+++.|+++.|.+.+||||+||||||++.+++.+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~i~gNWKmn~t~~~~~~~~~ 86 (315)
T PLN02429 8 APPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSS-SHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLIS 86 (315)
T ss_pred cCcccccccCCCccccccccccccchhhcccccccccccccc-ccccccccccccccCCEEEEEECCcCCCHHHHHHHHH
Confidence 446799999999877765533221 122223 4477899999999999999999999999999999999
Q ss_pred HHhhccccCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHHHHhcCCCEEEeeecccccccCCCH
Q 024925 76 DLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDD 155 (260)
Q Consensus 76 ~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd 155 (260)
+++......+++|+|||||++|..+.+.+.+++.+|||||++.+.||||||||++||+|+||+||||||||||++|+|||
T Consensus 87 ~l~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVSa~mLkd~Gv~~ViiGHSERR~~f~Etd 166 (315)
T PLN02429 87 DLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKD 166 (315)
T ss_pred HHHhcccCCCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCCHHHHHHcCCCEEEeCccccCCCCCcCH
Confidence 99764333469999999999999998877667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHH
Q 024925 156 QFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA 235 (260)
Q Consensus 156 ~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~ 235 (260)
+.|++|+++|+++||+||+||||++++||+|++.++|.+||+.+++.++++++++|||||+||||||++|+|++++++|+
T Consensus 167 ~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ivIAYEPvWAIGTGk~as~e~~~~v~~ 246 (315)
T PLN02429 167 EFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHV 246 (315)
T ss_pred HHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccceEEEECCHHHhCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccceeeecccC
Q 024925 236 ALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 236 ~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
+||++|+++++++++.+..|.|-|
T Consensus 247 ~IR~~l~~~~~~~va~~irILYGG 270 (315)
T PLN02429 247 AVRGWLKKNVSEEVASKTRIIYGG 270 (315)
T ss_pred HHHHHHHHHhhhhhccCceEEEcC
Confidence 999999999999999999999977
No 2
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-76 Score=517.35 Aligned_cols=208 Identities=62% Similarity=1.007 Sum_probs=203.9
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHH
Q 024925 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQ 131 (260)
Q Consensus 52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~m 131 (260)
.||+||+||||||++.+++.++++.|+....+.++|++|+||++||+.+++.+++.|.|+||||+....||||||+|++|
T Consensus 2 arkffvgGNwKmngs~~s~~eii~~ln~a~~~~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~m 81 (247)
T KOG1643|consen 2 ARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEM 81 (247)
T ss_pred CcceEecccccccCcHHHHHHHHHHhhhccCCCCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccCHHH
Confidence 47999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEE
Q 024925 132 LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVI 211 (260)
Q Consensus 132 Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiI 211 (260)
|+|+|++|||+||||||++|+|+|++|.+|+++||+.||++|+||||+++|||+|+|.+|+.+||+++++.+.+|++|+|
T Consensus 82 lkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~nivi 161 (247)
T KOG1643|consen 82 LKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSNIVI 161 (247)
T ss_pred HHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 212 AYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 212 AYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
|||||||||||++|||+|+||+|..||+|++++.++.+|....|+|.|
T Consensus 162 AYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGG 209 (247)
T KOG1643|consen 162 AYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGG 209 (247)
T ss_pred EeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEecc
Confidence 999999999999999999999999999999999999999999999987
No 3
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.4e-72 Score=509.59 Aligned_cols=205 Identities=38% Similarity=0.632 Sum_probs=192.7
Q ss_pred cceEEeecccccCHHHHHHHHHHHhhcccc-CCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHHH
Q 024925 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 132 (260)
Q Consensus 54 k~~IigNWKmn~t~~~~~~l~~~l~~~~~~-~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~mL 132 (260)
+|||+||||||++..++.+|++.+...... .+++|+|||||++|..+.+.+.+++.+|||||++.+.||||||||++||
T Consensus 2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~~~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~mL 81 (253)
T PRK14567 2 QKLIMGNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARML 81 (253)
T ss_pred CeEEEEECCcCCCHHHHHHHHHHHHhhccCCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHHH
Confidence 689999999999999999999998654322 4689999999999999988766679999999999999999999999999
Q ss_pred HhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCC--CCCceE
Q 024925 133 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVV 210 (260)
Q Consensus 133 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~--~~~~ii 210 (260)
||+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.+++.+||+.+++.++ ++++++
T Consensus 82 kd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~iv 161 (253)
T PRK14567 82 EDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVV 161 (253)
T ss_pred HHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 578999
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 211 IAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 211 IAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
|||||+||||||++||||+||++|++||+++++ ++++++....|.|-|
T Consensus 162 IAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGG 209 (253)
T PRK14567 162 IAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGG 209 (253)
T ss_pred EEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcC
Confidence 999999999999999999999999999999998 688888888888877
No 4
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.1e-72 Score=507.54 Aligned_cols=206 Identities=49% Similarity=0.747 Sum_probs=194.4
Q ss_pred CcceEEeecccccCHHHHHHHHHHHhhcccc-CCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCHH
Q 024925 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVE 130 (260)
Q Consensus 53 rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~-~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa~ 130 (260)
|+|||++|||||++..++.+|++.+.+.... .+++|+|||||++|..+.+.+. +++.+|||||++.+.||||||||++
T Consensus 1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~ 80 (250)
T PRK00042 1 RKPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISAE 80 (250)
T ss_pred CCcEEEEEcccCcCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCHH
Confidence 5789999999999999999999998763322 4699999999999999998776 6899999999999999999999999
Q ss_pred HHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCC--CCCc
Q 024925 131 QLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDN 208 (260)
Q Consensus 131 mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~--~~~~ 208 (260)
||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|++.++|.+||+.+++.++ .+++
T Consensus 81 mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~~ 160 (250)
T PRK00042 81 MLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFAN 160 (250)
T ss_pred HHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 4789
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 209 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 209 iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
++|||||+||||||++|+|++++++|++||++++++|+ +++.+..|.|-|
T Consensus 161 ~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGG 210 (250)
T PRK00042 161 LVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGG 210 (250)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcC
Confidence 99999999999999999999999999999999999999 888888888877
No 5
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.7e-72 Score=509.31 Aligned_cols=207 Identities=39% Similarity=0.666 Sum_probs=193.4
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcC-CC-------ceEeeeccccCCCccc
Q 024925 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLT-DR-------IEIAAQNSWVGKGGAF 123 (260)
Q Consensus 52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~-~~-------i~vgAQnv~~~~~GA~ 123 (260)
.|||||+||||||++..++.+|++.+.......+++|+|||||++|..+.+.+. ++ +.+|||||++.+.|||
T Consensus 3 ~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~~~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~Ga~ 82 (260)
T PRK14566 3 LRRPMVAGNWKMNGSAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDFGAY 82 (260)
T ss_pred CCCeEEEEECCcCcCHHHHHHHHHHHHhhcCCCCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccCCCc
Confidence 478999999999999999999999986543335699999999999999988765 44 9999999999999999
Q ss_pred ccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcC
Q 024925 124 TGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI 203 (260)
Q Consensus 124 TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i 203 (260)
|||||++||+|+||+||||||||||.+|+|+|+.|++|+++|+++||+||+||||++++|++|++.++|.+||+..++.+
T Consensus 83 TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~ 162 (260)
T PRK14566 83 TGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKN 162 (260)
T ss_pred cCccCHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred C--CCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 204 P--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 204 ~--~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
. +++++||||||+||||||++|+|++||++|.+||++|++. +++++.+..|.|-|
T Consensus 163 ~~~~~~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGG 219 (260)
T PRK14566 163 GTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGG 219 (260)
T ss_pred chhhcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecC
Confidence 3 5789999999999999999999999999999999999998 98989899999987
No 6
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.4e-72 Score=508.61 Aligned_cols=208 Identities=53% Similarity=0.880 Sum_probs=197.6
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcccc-CCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCH
Q 024925 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISV 129 (260)
Q Consensus 52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~-~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa 129 (260)
||+|+|++|||||++.+++.+|++.+...... .++++++||||++|..+.+.+. +++.+|||||++.+.||||||||+
T Consensus 3 ~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~ 82 (255)
T PTZ00333 3 KRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEISA 82 (255)
T ss_pred CCCeEEEEEcccccCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcCCH
Confidence 68899999999999999999999998765433 5699999999999999998776 789999999999999999999999
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCC--CCC
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWD 207 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~--~~~ 207 (260)
+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.++|.+|++.+++.++ .+.
T Consensus 83 ~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~~ 162 (255)
T PTZ00333 83 EMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWD 162 (255)
T ss_pred HHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 378
Q ss_pred ceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 208 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 208 ~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
+++|||||+||||||++|+||+|+++|++||+.+++.|+++++....|.|-|
T Consensus 163 ~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGG 214 (255)
T PTZ00333 163 NIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGG 214 (255)
T ss_pred eEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcC
Confidence 9999999999999999999999999999999999999999999889998877
No 7
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=1.1e-72 Score=509.57 Aligned_cols=205 Identities=49% Similarity=0.796 Sum_probs=192.0
Q ss_pred ceEEeecccccCHHHHHHHHHHHhhcccc-CCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCHHHH
Q 024925 55 FFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQL 132 (260)
Q Consensus 55 ~~IigNWKmn~t~~~~~~l~~~l~~~~~~-~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa~mL 132 (260)
|||++|||||++.+++.+|++++.+...+ .+++++|||||++|..+.+.++ +++.+|||||++.+.||||||||++||
T Consensus 1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~mL 80 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLKELLNAKLPNKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEML 80 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHHHHHHHHCHTTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHHH
T ss_pred CEEEEehhhCcCHHHHHHHHHHHHhcccccCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHHH
Confidence 79999999999999999999997765444 4899999999999999999886 889999999999999999999999999
Q ss_pred HhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCC--CCCceE
Q 024925 133 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVV 210 (260)
Q Consensus 133 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~--~~~~ii 210 (260)
+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+.|++.++|.+||+.++++++ ++++++
T Consensus 81 ~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~i 160 (244)
T PF00121_consen 81 KDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNII 160 (244)
T ss_dssp HHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCEE
T ss_pred HHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccccceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 578999
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 211 IAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 211 IAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
|||||+||||||++|+|++++++|++||++|+++|+.+.+.+..|.|.|
T Consensus 161 IAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGG 209 (244)
T PF00121_consen 161 IAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGG 209 (244)
T ss_dssp EEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEES
T ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECC
Confidence 9999999999999999999999999999999999999999999999987
No 8
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=8e-72 Score=506.38 Aligned_cols=208 Identities=58% Similarity=0.995 Sum_probs=196.0
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhc-cc-cCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCH
Q 024925 52 SNKFFVGGNWKCNGTKESITKLVSDLNDA-KL-EADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISV 129 (260)
Q Consensus 52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~-~~-~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa 129 (260)
.|||||+||||||++..++.+|++.+... .. ..+++|++||||++|..+.+.++.+|.+|||||++.+.||||||||+
T Consensus 2 ~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~ 81 (253)
T PLN02561 2 ARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEISA 81 (253)
T ss_pred CCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCCH
Confidence 47899999999999999999999998653 22 25689999999999999988766569999999999999999999999
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCce
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 209 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~i 209 (260)
+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.+++.+|++.+++.+++++++
T Consensus 82 ~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~i 161 (253)
T PLN02561 82 EMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANV 161 (253)
T ss_pred HHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877899
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 210 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 210 iIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
+|||||+||||||++|+|++++++|++||++|.++||++++....|.|-|
T Consensus 162 iIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGG 211 (253)
T PLN02561 162 VLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGG 211 (253)
T ss_pred EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeC
Confidence 99999999999999999999999999999999999999989888888876
No 9
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=1.3e-71 Score=502.08 Aligned_cols=204 Identities=50% Similarity=0.748 Sum_probs=194.2
Q ss_pred ceEEeecccccCHHHHHHHHHHHhhccc-cCCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCHHHH
Q 024925 55 FFVGGNWKCNGTKESITKLVSDLNDAKL-EADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQL 132 (260)
Q Consensus 55 ~~IigNWKmn~t~~~~~~l~~~l~~~~~-~~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa~mL 132 (260)
|||++|||||++.+++.+|++.+..... ..+++++|||||++|..+.+.++ +++.+|||||++.+.||||||||++||
T Consensus 1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 80 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHhhccccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHHH
Confidence 6899999999999999999999976543 36799999999999999998876 689999999999999999999999999
Q ss_pred HhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEEE
Q 024925 133 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIA 212 (260)
Q Consensus 133 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiIA 212 (260)
+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.+++.+|++..++.++++++++||
T Consensus 81 ~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~iIA 160 (242)
T cd00311 81 KDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIA 160 (242)
T ss_pred HHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 213 YEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 213 YEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
|||+||||||++|+|++++++|++||+++++.+++ .+.+..|.|-|
T Consensus 161 YEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGG 206 (242)
T cd00311 161 YEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGG 206 (242)
T ss_pred ECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECC
Confidence 99999999999999999999999999999999998 88888888877
No 10
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.8e-71 Score=505.78 Aligned_cols=207 Identities=33% Similarity=0.492 Sum_probs=193.0
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcc--c--cCCceEEEcCCcccHHHHHHHcC-----CCceEeeeccccCCCcc
Q 024925 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAK--L--EADVDVVVAPPFVYIDQVKNSLT-----DRIEIAAQNSWVGKGGA 122 (260)
Q Consensus 52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~~--~--~~~v~VvvaPp~~~L~~v~~~~~-----~~i~vgAQnv~~~~~GA 122 (260)
||||||+||||||++..++.+|++.+.... . ..+++|+|||||++|..+.+.+. +++.+|||||++.+.||
T Consensus 1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga 80 (260)
T PRK15492 1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ 80 (260)
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence 489999999999999999999999986531 1 25689999999999999988652 57999999999999999
Q ss_pred cccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhc
Q 024925 123 FTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA 202 (260)
Q Consensus 123 ~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~ 202 (260)
||||||++||||+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+.|.+.+++.+||+.+++.
T Consensus 81 ~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~ 160 (260)
T PRK15492 81 FTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHG 160 (260)
T ss_pred ccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 203 IP--SWDNVVIAYEPVWAIGT-GKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 203 i~--~~~~iiIAYEPvWAIGT-G~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
++ .++++||||||+||||| |++|+||+||++|++||++|++.++++ +.+..|.|-|
T Consensus 161 ~~~~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGG 219 (260)
T PRK15492 161 INPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGG 219 (260)
T ss_pred CCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcC
Confidence 86 47899999999999998 999999999999999999999999987 7788888876
No 11
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-70 Score=493.99 Aligned_cols=206 Identities=47% Similarity=0.690 Sum_probs=192.6
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcccc--CCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccC
Q 024925 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLE--ADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEIS 128 (260)
Q Consensus 52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~--~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEIS 128 (260)
||+|||++|||||++..++.+|++.+...... .+++++|||||++|..+.+.+. .++.+|||||++.+.||||||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS 80 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS 80 (251)
T ss_pred CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence 57889999999999999999999988765433 2344999999999999999887 48899999999999999999999
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCc
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN 208 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~ 208 (260)
++||+|+||+||||||||||.+|+|+|++|++|+++|+++||+||+||||++++||+|+|.++|.+|++..+..++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~ 160 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEAN 160 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985589
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 209 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 209 iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
++|||||+||||||+++|+++++++|++||.++.++||++ .++-|.|-|
T Consensus 161 ~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGG 209 (251)
T COG0149 161 IVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGG 209 (251)
T ss_pred eEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeC
Confidence 9999999999999999999999999999999999999998 777777766
No 12
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=2e-68 Score=534.17 Aligned_cols=209 Identities=45% Similarity=0.719 Sum_probs=198.0
Q ss_pred hcCcceEEeecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCH
Q 024925 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISV 129 (260)
Q Consensus 51 ~~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa 129 (260)
.||+|||++|||||++.+++.+|++.+.......+++|+|||||++|..+.+.+. +++.+|||||++.+.||||||||+
T Consensus 395 ~Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~~~~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVSa 474 (645)
T PRK13962 395 NPRKPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEISG 474 (645)
T ss_pred CCCCcEEEEECCcCcCHHHHHHHHHHHHhhccCCCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCCH
Confidence 4789999999999999999999999987643334569999999999999988776 689999999999999999999999
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCC--CCC
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWD 207 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~--~~~ 207 (260)
+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.+++.+||+..++.++ +++
T Consensus 475 ~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~~ 554 (645)
T PRK13962 475 PMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVK 554 (645)
T ss_pred HHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 578
Q ss_pred ceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 208 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 208 ~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
++||||||+||||||++|+|++||++|++||++|++.|+++++.+..|.|-|
T Consensus 555 ~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGG 606 (645)
T PRK13962 555 KVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGG 606 (645)
T ss_pred cEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecC
Confidence 9999999999999999999999999999999999999999999999999987
No 13
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=7.5e-68 Score=500.18 Aligned_cols=206 Identities=33% Similarity=0.501 Sum_probs=191.1
Q ss_pred CcceEEeecccccCHHHHHHHHHHHhhcc----ccCCceEEEcCCcccHHHHHHHcC-----CCceEeeeccccCCCccc
Q 024925 53 NKFFVGGNWKCNGTKESITKLVSDLNDAK----LEADVDVVVAPPFVYIDQVKNSLT-----DRIEIAAQNSWVGKGGAF 123 (260)
Q Consensus 53 rk~~IigNWKmn~t~~~~~~l~~~l~~~~----~~~~v~VvvaPp~~~L~~v~~~~~-----~~i~vgAQnv~~~~~GA~ 123 (260)
|+|||+||||||++.+++.+|+++|.... ...+++++|||||++|..+.+.+. +++.+|||||++.+.|||
T Consensus 3 r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga~ 82 (355)
T PRK14905 3 KKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKGQF 82 (355)
T ss_pred CceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCCc
Confidence 67899999999999999999999985432 124689999999999999987653 479999999999999999
Q ss_pred ccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcC
Q 024925 124 TGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI 203 (260)
Q Consensus 124 TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i 203 (260)
|||||++||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|.+.+++.+||+..++++
T Consensus 83 TGEVS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v 162 (355)
T PRK14905 83 TGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGV 162 (355)
T ss_pred cCcCCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C--CCCceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 204 P--SWDNVVIAYEPVWAIGT-GKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 204 ~--~~~~iiIAYEPvWAIGT-G~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
+ ++.+++|||||+||||| |++|+|++||++|++||++|.+.|++. +...-|.|-|
T Consensus 163 ~~~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGG 220 (355)
T PRK14905 163 SAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGG 220 (355)
T ss_pred CHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeC
Confidence 6 57899999999999998 789999999999999999999999888 7777888876
No 14
>PRK14565 triosephosphate isomerase; Provisional
Probab=100.00 E-value=3.1e-67 Score=472.42 Aligned_cols=184 Identities=36% Similarity=0.651 Sum_probs=172.8
Q ss_pred cceEEeecccccCHHHHHHHHHHHhhccc--cCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHH
Q 024925 54 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQ 131 (260)
Q Consensus 54 k~~IigNWKmn~t~~~~~~l~~~l~~~~~--~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~m 131 (260)
||+|+||||||++..++.+|++++..... +.++++++||||++|..+.+.. +++.+|||||++.+.||||||||++|
T Consensus 2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~-~~i~vgAQnv~~~~~Ga~TGevS~~m 80 (237)
T PRK14565 2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECN-PNIKLGAQNCFYGSSGGYTGEISAKM 80 (237)
T ss_pred CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhc-CCceEEecccccccCCCccCccCHHH
Confidence 68999999999999999999999976432 3579999999999999988754 57999999999999999999999999
Q ss_pred HHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEE
Q 024925 132 LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVI 211 (260)
Q Consensus 132 Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiI 211 (260)
|+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|+.|++.++|.+||+..+.. +++++|
T Consensus 81 Lkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~---~~~ivI 157 (237)
T PRK14565 81 LKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK---HGEFII 157 (237)
T ss_pred HHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC---CCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765 467999
Q ss_pred EEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 212 AYEPVWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 212 AYEPvWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
||||+||||||++|+||+|+++|++||++.
T Consensus 158 AYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~ 187 (237)
T PRK14565 158 AYEPVWAIGGSTIPSNDAIAEAFEIIRSYD 187 (237)
T ss_pred EECCHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999973
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=100.00 E-value=2.2e-59 Score=413.62 Aligned_cols=174 Identities=36% Similarity=0.466 Sum_probs=154.0
Q ss_pred eEEeecc-cccCHHHHHHHHHHHhhccc-cCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHHHH
Q 024925 56 FVGGNWK-CNGTKESITKLVSDLNDAKL-EADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLK 133 (260)
Q Consensus 56 ~IigNWK-mn~t~~~~~~l~~~l~~~~~-~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~mLk 133 (260)
||++||| ||++..+...|++.+..... ..+++|++||||++|..+.+.+. +.+|||||++.+.||||||||++|||
T Consensus 1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~--i~vgAQn~~~~~~Ga~TGevS~~mLk 78 (205)
T TIGR00419 1 LVIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREVE--IPVYAQHVDAVLSGAHTGEISAEMLK 78 (205)
T ss_pred CEEEEhhhcCCCHHHHHHHHHHHHhhccccCCcEEEEECCHHHHHHHHHhcC--ceEEecccccccCCCccCcCCHHHHH
Confidence 6899999 99999999999988865332 25689999999999999988763 99999999999999999999999999
Q ss_pred hcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEEEE
Q 024925 134 DIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAY 213 (260)
Q Consensus 134 d~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAY 213 (260)
|+||+|||||||||| |+||| |++|+++|+++||+||+|| +++.+|+... .+++++|||
T Consensus 79 d~G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi-------------~~v~~q~~~~-----~~~~~vIAY 136 (205)
T TIGR00419 79 DIGAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCT-------------NNVLTTAAAA-----ALEPDVVAV 136 (205)
T ss_pred HcCCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEE-------------HHHHHHHHhh-----hhcCeEEEE
Confidence 999999999999999 99999 9999999999999999999 3455555432 257899999
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925 214 EPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 259 (260)
Q Consensus 214 EPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 259 (260)
||+||||||++|||+++|++|++|| ++++.+.+..|.|-|
T Consensus 137 EPvWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGG 176 (205)
T TIGR00419 137 EPPELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGA 176 (205)
T ss_pred CCHHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeC
Confidence 9999999999999999999999999 466667777787766
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.5e-40 Score=294.59 Aligned_cols=165 Identities=27% Similarity=0.308 Sum_probs=143.7
Q ss_pred cCcceEEeeccccc--CHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCH
Q 024925 52 SNKFFVGGNWKCNG--TKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISV 129 (260)
Q Consensus 52 ~rk~~IigNWKmn~--t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa 129 (260)
||+|||++|||||+ +..++.+|++.+.+.....++++++||||++|..+.+.. ++.++|||++..+.|+||||+|+
T Consensus 1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~v~~~~--~i~v~aq~~~~~~~G~~tg~~~~ 78 (223)
T PRK04302 1 MKYPIILVNFKTYPEATGKDALEIAKAAEKVSKETGVRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHILP 78 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHhccccCCCEEEEECCHHHHHHHHHhc--CCeEEeccCCCCCCCCchhhhHH
Confidence 47899999999999 699999999988764333568999999999999988765 68999999999999999999999
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCce
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 209 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~i 209 (260)
+||+|+|+++||+||||||..++| +++|++.|++.||.||+|+||.. |++.+.+ ....
T Consensus 79 ~~l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~--------------~~~~~~~----~~~~ 136 (223)
T PRK04302 79 EAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPE--------------TSAAAAA----LGPD 136 (223)
T ss_pred HHHHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHH--------------HHHHHhc----CCCC
Confidence 999999999999999999999888 78888999999999999999953 2333222 2334
Q ss_pred EEEEcccccccCCCC---CCHHHHHHHHHHHHHH
Q 024925 210 VIAYEPVWAIGTGKV---ATPEQAQEVHAALRDW 240 (260)
Q Consensus 210 iIAYEPvWAIGTG~~---aspe~iqe~~~~IR~~ 240 (260)
+|+|||+|+||||.. ++|++++++++.||+.
T Consensus 137 ~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~ 170 (223)
T PRK04302 137 YVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV 170 (223)
T ss_pred EEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc
Confidence 899999999999976 8899999999999975
No 17
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.34 E-value=0.19 Score=46.28 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=60.3
Q ss_pred CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 024925 128 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLKAYADAIPSW 206 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIl-CIGE~leere~g~~~~vl~~Ql~~~l~~i~~~ 206 (260)
-.++++++|++.+||- ..-+.|..+.+ +.+.++||.+|. |.-.+.++| ++.+.+.-+.
T Consensus 109 f~~~~~~aGvdGviip----DLp~ee~~~~~----~~~~~~gl~~I~lvap~t~~er------------i~~i~~~s~g- 167 (258)
T PRK13111 109 FAADAAEAGVDGLIIP----DLPPEEAEELR----AAAKKHGLDLIFLVAPTTTDER------------LKKIASHASG- 167 (258)
T ss_pred HHHHHHHcCCcEEEEC----CCCHHHHHHHH----HHHHHcCCcEEEEeCCCCCHHH------------HHHHHHhCCC-
Confidence 3899999999999995 45555555554 779999999998 777776665 3333332112
Q ss_pred CceEEEEccccccc-CCC-CCCHHHHHHHHHHHHHH
Q 024925 207 DNVVIAYEPVWAIG-TGK-VATPEQAQEVHAALRDW 240 (260)
Q Consensus 207 ~~iiIAYEPvWAIG-TG~-~aspe~iqe~~~~IR~~ 240 (260)
.|.| +-.+| ||. ...++.+.+..+.||+.
T Consensus 168 ---fIY~--vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 168 ---FVYY--VSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred ---cEEE--EeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 4555 44577 676 35567778888888874
No 18
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.32 E-value=0.13 Score=49.24 Aligned_cols=100 Identities=18% Similarity=0.308 Sum_probs=72.0
Q ss_pred ccCCCcccccc---cCHHHHHhc-CCCEEEe-eecccccccCCCHHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCChH
Q 024925 116 WVGKGGAFTGE---ISVEQLKDI-GCKWVVL-GHSERRHVIGEDDQFIGKKAAYALSEGLGV-IACIGEQLQEREAGKTF 189 (260)
Q Consensus 116 ~~~~~GA~TGE---ISa~mLkd~-G~~~viI-GHSERR~~f~Etd~~I~~Kv~~Al~~gL~p-IlCIGE~leere~g~~~ 189 (260)
-+...|+||-+ -.+++.+++ |.+|+=+ =|.|+|..+.+..+.+ ++.+...+.||.+ ++|.....+.|
T Consensus 140 lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v-~aa~~L~~~Gf~v~~yc~~d~~~a~------ 212 (326)
T PRK11840 140 LPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETL-KATEILVKEGFQVMVYCSDDPIAAK------ 212 (326)
T ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH------
Confidence 35677999987 456777887 5688744 3778999998877766 3344444559999 99999887533
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEcc-cccccCCCC-CCHHHHHHHHHH
Q 024925 190 DVCFQQLKAYADAIPSWDNVVIAYEP-VWAIGTGKV-ATPEQAQEVHAA 236 (260)
Q Consensus 190 ~vl~~Ql~~~l~~i~~~~~iiIAYEP-vWAIGTG~~-aspe~iqe~~~~ 236 (260)
++.. +. -+|+|| .-.||||.. .+|+.++.+.+.
T Consensus 213 -----~l~~----~g-----~~avmPl~~pIGsg~gv~~p~~i~~~~e~ 247 (326)
T PRK11840 213 -----RLED----AG-----AVAVMPLGAPIGSGLGIQNPYTIRLIVEG 247 (326)
T ss_pred -----HHHh----cC-----CEEEeeccccccCCCCCCCHHHHHHHHHc
Confidence 2322 21 189999 999999995 488888777665
No 19
>PLN02591 tryptophan synthase
Probab=92.16 E-value=0.71 Score=42.41 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=54.8
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH-HHHhcCChHHHHHHHHHHHHhcCCCCC
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL-QEREAGKTFDVCFQQLKAYADAIPSWD 207 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l-eere~g~~~~vl~~Ql~~~l~~i~~~~ 207 (260)
.+.+++.|++.+||= ..-+.|.++.. ..|.++||.+|.||--+. ++| ++.+...-+.
T Consensus 99 ~~~~~~aGv~Gviip----DLP~ee~~~~~----~~~~~~gl~~I~lv~Ptt~~~r------------i~~ia~~~~g-- 156 (250)
T PLN02591 99 MATIKEAGVHGLVVP----DLPLEETEALR----AEAAKNGIELVLLTTPTTPTER------------MKAIAEASEG-- 156 (250)
T ss_pred HHHHHHcCCCEEEeC----CCCHHHHHHHH----HHHHHcCCeEEEEeCCCCCHHH------------HHHHHHhCCC--
Confidence 678999999999997 45566666555 789999999999995544 445 3343332111
Q ss_pred ceEEEEccccccc----CCCC-CCHHHHHHHHHHHHHH
Q 024925 208 NVVIAYEPVWAIG----TGKV-ATPEQAQEVHAALRDW 240 (260)
Q Consensus 208 ~iiIAYEPvWAIG----TG~~-aspe~iqe~~~~IR~~ 240 (260)
.| +.|+ ||.. ..++++.+..+.||+.
T Consensus 157 --FI-----Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~ 187 (250)
T PLN02591 157 --FV-----YLVSSTGVTGARASVSGRVESLLQELKEV 187 (250)
T ss_pred --cE-----EEeeCCCCcCCCcCCchhHHHHHHHHHhc
Confidence 22 3444 3332 3367777778888773
No 20
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.00 E-value=4.9 Score=35.31 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcCCCceEe---eeccccCC--CcccccccCHHHHHhcCCCEEE
Q 024925 67 KESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIA---AQNSWVGK--GGAFTGEISVEQLKDIGCKWVV 141 (260)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~~~i~vg---AQnv~~~~--~GA~TGEISa~mLkd~G~~~vi 141 (260)
...+.++++.+.+ .++..+-..++.++..+.+.. .+.+. .++....+ -|+|+++ .+++++.|+++++
T Consensus 26 ~~~i~~~a~~~~~----~G~~~~~~~~~~~~~~i~~~~--~iPil~~~~~~~~~~~~~ig~~~~~--~~~a~~aGad~I~ 97 (219)
T cd04729 26 PEIMAAMALAAVQ----GGAVGIRANGVEDIRAIRARV--DLPIIGLIKRDYPDSEVYITPTIEE--VDALAAAGADIIA 97 (219)
T ss_pred HHHHHHHHHHHHH----CCCeEEEcCCHHHHHHHHHhC--CCCEEEEEecCCCCCCceeCCCHHH--HHHHHHcCCCEEE
Confidence 3455555554443 345555557778888777653 34433 56643211 2555554 4899999999999
Q ss_pred eeecccccccCCCHHHHHHHHHHHHHCC-CeEEEEeC
Q 024925 142 LGHSERRHVIGEDDQFIGKKAAYALSEG-LGVIACIG 177 (260)
Q Consensus 142 IGHSERR~~f~Etd~~I~~Kv~~Al~~g-L~pIlCIG 177 (260)
+.+++++.--+|....+ ++.+.+.| +..++++-
T Consensus 98 ~~~~~~~~p~~~~~~~~---i~~~~~~g~~~iiv~v~ 131 (219)
T cd04729 98 LDATDRPRPDGETLAEL---IKRIHEEYNCLLMADIS 131 (219)
T ss_pred EeCCCCCCCCCcCHHHH---HHHHHHHhCCeEEEECC
Confidence 99999874333333333 35566666 77666654
No 21
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.30 E-value=20 Score=32.28 Aligned_cols=149 Identities=11% Similarity=0.140 Sum_probs=82.6
Q ss_pred ccCHHHHHHHHHHHhhccccCCceEEEcCCcccHH-H----------------HHHHcC--CCceEeeecc-ccCCCccc
Q 024925 64 NGTKESITKLVSDLNDAKLEADVDVVVAPPFVYID-Q----------------VKNSLT--DRIEIAAQNS-WVGKGGAF 123 (260)
Q Consensus 64 n~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~-~----------------v~~~~~--~~i~vgAQnv-~~~~~GA~ 123 (260)
|.+.++..++++.+.+. -.-+|+.+-+|.+.-+ . +.+.+. .++.+ .+ .+... -.
T Consensus 14 ~p~~~~~~~~~~~l~~~--ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl---~lM~y~n~-~~ 87 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL--VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPI---ILMTYLED-YV 87 (244)
T ss_pred CCCHHHHHHHHHHHHhh--CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCE---EEEEecch-hh
Confidence 56778888888777654 2347777765555221 0 111111 12222 11 11111 12
Q ss_pred ccccC-HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhc
Q 024925 124 TGEIS-VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA 202 (260)
Q Consensus 124 TGEIS-a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~ 202 (260)
+|.-. .+.+++.|++++++ | .+.-|+.+....=++.+.++||.+++|+.-+... +.++.+++.
T Consensus 88 ~~~~~~i~~~~~~Gadgvii-~----dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~-----------e~l~~~~~~ 151 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLF-P----DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD-----------LLIHRLSKL 151 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEE-C----CCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH-----------HHHHHHHHh
Confidence 33333 67899999999999 3 1112433445555588999999999999975421 124444443
Q ss_pred CCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 203 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 203 i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
.+. =+++..+|.- |.. =++.+.+..+.+|+..
T Consensus 152 ~~~--~l~msv~~~~----g~~-~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 152 SPL--FIYYGLRPAT----GVP-LPVSVERNIKRVRNLV 183 (244)
T ss_pred CCC--EEEEEeCCCC----CCC-chHHHHHHHHHHHHhc
Confidence 321 1235777755 333 3555666777777665
No 22
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=77.67 E-value=16 Score=31.00 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=68.7
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCChHHHHHHHHHHHH
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV-IACIGEQLQEREAGKTFDVCFQQLKAYA 200 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p-IlCIGE~leere~g~~~~vl~~Ql~~~l 200 (260)
.|.|++....||+.|+++|+|-=+|=..+ .|.....-++.|.++||.+ ++.-.... +...-.+|.+-++
T Consensus 5 ~~qg~~dw~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~~~~-------~~~~a~~qA~~f~ 74 (181)
T PF01183_consen 5 HYQGDIDWQKVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFARAT-------NSSDAEAQADYFL 74 (181)
T ss_dssp GGGSS-SHHHHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE--TT-------THCHHHHHHHHHH
T ss_pred CCCCccCHHHHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEeccC-------CcccHHHHHHHHH
Confidence 47899999999999999999988887654 4455666778999999986 33333321 0112345666666
Q ss_pred hcC-C-CCC--ceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 024925 201 DAI-P-SWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQ 247 (260)
Q Consensus 201 ~~i-~-~~~--~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~ 247 (260)
+.+ . ... -++|-+|-. .....+.+...+.+....+.+.+..|.
T Consensus 75 ~~~~~~~~~~~~~~lD~E~~----~~~~~~~~~~~~~~~~f~~~~~~~~G~ 121 (181)
T PF01183_consen 75 NQVKGGDPGDLPPALDVEDD----KSNNPSKSDNTAWVKAFLDEVEKAAGY 121 (181)
T ss_dssp HCTHTSSTSCS-EEEEE-S-----GGCCSSHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHhcccCCCcceEEEecccc----ccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 666 3 222 256888843 233445666665555555666555553
No 23
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=76.28 E-value=4.2 Score=37.24 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=44.3
Q ss_pred CCcccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 119 KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 119 ~~GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
-.|+|+.|.-.++++++|+++++-=-| |.+ -...|+.+|.+.|+.+|+ |.-+.
T Consensus 173 m~gPfs~e~n~aL~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP~ 225 (248)
T PRK08057 173 LRGPFSLELERALLRQHRIDVVVTKNS------GGA--GTEAKLEAARELGIPVVM-IARPA 225 (248)
T ss_pred eeCCCCHHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCCC
Confidence 349999999999999999999997555 554 577899999999999887 56553
No 24
>PRK01060 endonuclease IV; Provisional
Probab=74.03 E-value=45 Score=29.82 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=16.8
Q ss_pred ceEEEEcccccccCCCCCCHHHHHHHHH
Q 024925 208 NVVIAYEPVWAIGTGKVATPEQAQEVHA 235 (260)
Q Consensus 208 ~iiIAYEPvWAIGTG~~aspe~iqe~~~ 235 (260)
.|.|+.||.|.-++....+++++.++.+
T Consensus 139 gv~l~iEn~~~~~~~~~~~~~~~~~l~~ 166 (281)
T PRK01060 139 GVTIVLENTAGQGSELGRRFEELARIID 166 (281)
T ss_pred CCEEEEecCCCCCCcccCCHHHHHHHHH
Confidence 4677788877555444456666654443
No 25
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.59 E-value=20 Score=33.23 Aligned_cols=93 Identities=17% Similarity=0.322 Sum_probs=58.7
Q ss_pred cCCCcccccc---cCHHHHHhcC-CCEEEee-ecccccccCCCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCChHH
Q 024925 117 VGKGGAFTGE---ISVEQLKDIG-CKWVVLG-HSERRHVIGEDDQFIGKKAAYALSEGLGVI-ACIGEQLQEREAGKTFD 190 (260)
Q Consensus 117 ~~~~GA~TGE---ISa~mLkd~G-~~~viIG-HSERR~~f~Etd~~I~~Kv~~Al~~gL~pI-lCIGE~leere~g~~~~ 190 (260)
+...|+||-+ -.+.+.++++ .+|+=+= |.+-+.++.+..+.| ++.+...+.||.++ +|.....+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv-~aa~~L~~~Gf~vlpyc~dd~~~ar------- 138 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETL-KAAEILVKEGFTVLPYCTDDPVLAK------- 138 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH-------
Confidence 5567999877 3566777774 4666321 333456666655555 44455555699999 9999887533
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEccc--ccccCCCC-CCHHHHH
Q 024925 191 VCFQQLKAYADAIPSWDNVVIAYEPV--WAIGTGKV-ATPEQAQ 231 (260)
Q Consensus 191 vl~~Ql~~~l~~i~~~~~iiIAYEPv--WAIGTG~~-aspe~iq 231 (260)
+|..+ + ++ .| |+ -.||||.- .+|+.|+
T Consensus 139 ----~l~~~--G-~~----~v---mPlg~pIGsg~Gi~~~~~I~ 168 (248)
T cd04728 139 ----RLEDA--G-CA----AV---MPLGSPIGSGQGLLNPYNLR 168 (248)
T ss_pred ----HHHHc--C-CC----Ee---CCCCcCCCCCCCCCCHHHHH
Confidence 23322 1 12 33 99 67999985 4777766
No 26
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=68.32 E-value=32 Score=30.59 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHCCCeEEEEe-CCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEEEEccc-c-cccCCCCCCHHHHHHH
Q 024925 157 FIGKKAAYALSEGLGVIACI-GEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPV-W-AIGTGKVATPEQAQEV 233 (260)
Q Consensus 157 ~I~~Kv~~Al~~gL~pIlCI-GE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPv-W-AIGTG~~aspe~iqe~ 233 (260)
.+.+-+..|...|...|.|. |............+.+.+.|+.+.+... ...+.|+|||. + ...+....++++..++
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l 164 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLM-KEDILLLIEPINHFDIPGFHLTGTRQALKL 164 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HcCCEEEEEeCCCcCCCCCccCCHHHHHHH
Confidence 35566678888888877664 3211000000112233333443322111 13578999984 2 1112223456555544
Q ss_pred HH
Q 024925 234 HA 235 (260)
Q Consensus 234 ~~ 235 (260)
.+
T Consensus 165 l~ 166 (258)
T PRK09997 165 ID 166 (258)
T ss_pred HH
Confidence 43
No 27
>PRK00208 thiG thiazole synthase; Reviewed
Probab=67.66 E-value=22 Score=33.03 Aligned_cols=91 Identities=19% Similarity=0.349 Sum_probs=57.3
Q ss_pred cCCCcccccc---cCHHHHHhcC-CCEE---EeeecccccccCCCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCh
Q 024925 117 VGKGGAFTGE---ISVEQLKDIG-CKWV---VLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI-ACIGEQLQEREAGKT 188 (260)
Q Consensus 117 ~~~~GA~TGE---ISa~mLkd~G-~~~v---iIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pI-lCIGE~leere~g~~ 188 (260)
+...|++|-| -.+.|.++++ .+|+ +||. -+..+.+..+.| ++.+...+.||.++ +|.....+.+
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~llpd~~~tv-~aa~~L~~~Gf~vlpyc~~d~~~ak----- 138 (250)
T PRK00208 67 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFVVLPYCTDDPVLAK----- 138 (250)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--CCCCCcCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH-----
Confidence 5567999877 3566777765 4666 4454 445566655555 44555556699999 9999887533
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEccc--ccccCCCC-CCHHHHH
Q 024925 189 FDVCFQQLKAYADAIPSWDNVVIAYEPV--WAIGTGKV-ATPEQAQ 231 (260)
Q Consensus 189 ~~vl~~Ql~~~l~~i~~~~~iiIAYEPv--WAIGTG~~-aspe~iq 231 (260)
+|..+ + ++ +| |+ -.||||+. .+|+.++
T Consensus 139 ------~l~~~--G-~~----~v---mPlg~pIGsg~gi~~~~~i~ 168 (250)
T PRK00208 139 ------RLEEA--G-CA----AV---MPLGAPIGSGLGLLNPYNLR 168 (250)
T ss_pred ------HHHHc--C-CC----Ee---CCCCcCCCCCCCCCCHHHHH
Confidence 23322 1 12 33 99 67999985 4666644
No 28
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=67.05 E-value=17 Score=32.19 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=11.5
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 024925 158 IGKKAAYALSEGLGVIAC 175 (260)
Q Consensus 158 I~~Kv~~Al~~gL~pIlC 175 (260)
+.+=+..|.+.|...|.|
T Consensus 86 ~~~~i~~a~~lg~~~i~~ 103 (254)
T TIGR03234 86 VALAIAYARALGCPQVNC 103 (254)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 444456677778777654
No 29
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=66.54 E-value=87 Score=27.14 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=40.7
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI 173 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pI 173 (260)
.|.|.|....+|..|+++|||-=+|--.+ .|.....-++.|.++||.+=
T Consensus 8 ~~qg~idw~~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~G 56 (199)
T cd06412 8 GHQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIRG 56 (199)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCceE
Confidence 46789999999999999999988886543 46677888899999999653
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=64.03 E-value=94 Score=26.64 Aligned_cols=110 Identities=19% Similarity=0.085 Sum_probs=61.4
Q ss_pred HHHHHhcCCCEEEeeecccc-cccCCC-----------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHH------
Q 024925 129 VEQLKDIGCKWVVLGHSERR-HVIGED-----------DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFD------ 190 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR-~~f~Et-----------d~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~------ 190 (260)
..+|+++|+++||+.=+=-+ ..+.-+ +..|..-+..|-+.||++.+=++-...=-.++....
T Consensus 26 ~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~ 105 (166)
T PF14488_consen 26 FRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNK 105 (166)
T ss_pred HHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHH
Confidence 36799999999998633222 122333 358999999999999999987764421111121111
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 024925 191 VCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQ 246 (260)
Q Consensus 191 vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~ 246 (260)
-+.++|...-..-+...-.+|-||+-=. .....+..+.++++++.+..
T Consensus 106 ~v~~el~~~yg~h~sf~GWYip~E~~~~--------~~~~~~~~~~l~~~lk~~s~ 153 (166)
T PF14488_consen 106 QVADELWQRYGHHPSFYGWYIPYEIDDY--------NWNAPERFALLGKYLKQISP 153 (166)
T ss_pred HHHHHHHHHHcCCCCCceEEEecccCCc--------ccchHHHHHHHHHHHHHhCC
Confidence 1222232222222356678999998321 12223444555555554433
No 31
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=63.63 E-value=67 Score=28.55 Aligned_cols=87 Identities=13% Similarity=-0.021 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHh--cCCh---HHHHHHHHHHHHhcCCCCCceEEEEcccccccCCC-CCCH
Q 024925 154 DDQFIGKKAAYALSEGLGVIACIGEQLQERE--AGKT---FDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGK-VATP 227 (260)
Q Consensus 154 td~~I~~Kv~~Al~~gL~pIlCIGE~leere--~g~~---~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~-~asp 227 (260)
+.+.....++.+.+.|+++++|||-....-. ...+ .+...+++..++..- .++-|-|-||+.-.-+.|. +.+.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y-glDGiDiD~E~~~~~~~~~~~~~~ 127 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY-GLDGVDFDDEYSGYGKNGTSQPSN 127 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCceEEeeeecccCCCCCCcchH
Confidence 3455666677788899999999995432110 0011 222233333333211 4566789999865422222 2344
Q ss_pred HHHHHHHHHHHHHH
Q 024925 228 EQAQEVHAALRDWL 241 (260)
Q Consensus 228 e~iqe~~~~IR~~l 241 (260)
+.....++.+|+.+
T Consensus 128 ~~~~~lv~~Lr~~~ 141 (255)
T cd06542 128 EAFVRLIKELRKYM 141 (255)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444555555444
No 32
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=61.23 E-value=10 Score=34.93 Aligned_cols=107 Identities=22% Similarity=0.139 Sum_probs=65.6
Q ss_pred ecccccCHHHHHHHHHH---Hhh-cc--------------cc-CCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCC
Q 024925 60 NWKCNGTKESITKLVSD---LND-AK--------------LE-ADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKG 120 (260)
Q Consensus 60 NWKmn~t~~~~~~l~~~---l~~-~~--------------~~-~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~ 120 (260)
+|..-.+.+++.+++.. ... .. .. ..+-+-|.|+..-|....+. . +-..|+ ..-.
T Consensus 108 ~~~~v~~~~ea~~~~~~~~~~~~~i~lttG~k~l~~f~~~~~~~~~~~RvLP~~~~l~~~~~~---G--~~~~~i-ia~~ 181 (256)
T TIGR00715 108 NIIEVPDIEEATRVAYQPYLRGKRVFLTAGASWLSHFSLSQDEAVVFVRVLPYPQALAQALKL---G--FPSDRI-IAMR 181 (256)
T ss_pred CeEEeCCHHHHHHHhhhccccCCcEEEecCcchHHHHhhccCCceEEEEECCCchhhHHHHHc---C--CChhcE-EEEe
Confidence 66666777777776655 321 10 00 12334455655555543331 1 112222 2345
Q ss_pred cccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 121 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 121 GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
|+|+.|.--++++++|+++++-=-| |++ --...|+++|++.|+.+|+ |.-+.
T Consensus 182 gPfs~e~n~al~~~~~i~~lVtK~S------G~~-Gg~~eKi~AA~~lgi~viv-I~RP~ 233 (256)
T TIGR00715 182 GPFSEELEKALLREYRIDAVVTKAS------GEQ-GGELEKVKAAEALGINVIR-IARPQ 233 (256)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCC------CCc-cchHHHHHHHHHcCCcEEE-EeCCC
Confidence 9999999999999999999986333 221 0257899999999999887 55554
No 33
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=61.09 E-value=1.1e+02 Score=26.33 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=39.7
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|.|....||+.|+++|||==.|.-.+ .|.....-++.|.++||.+
T Consensus 10 ~~q~~id~~~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~v 57 (191)
T cd06413 10 HHQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPR 57 (191)
T ss_pred CCCCCcCHHHHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCce
Confidence 46789999999999999999988876544 5666777789999999863
No 34
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=60.77 E-value=1.2e+02 Score=27.45 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=58.5
Q ss_pred cccccccCHHHHHhcCCCEEEee---eccc-cccc-CCCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCChHHH
Q 024925 121 GAFTGEISVEQLKDIGCKWVVLG---HSER-RHVI-GEDDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDV 191 (260)
Q Consensus 121 GA~TGEISa~mLkd~G~~~viIG---HSER-R~~f-~Etd~~I~~Kv~~Al~~gL~p----IlCIGE~leere~g~~~~v 191 (260)
|..|-|. .+.||++|++.+.+| +.|- +.+. +.+-+..-+-++.+.+.|+.+ |+-.||+.++..
T Consensus 119 g~~~~e~-l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~------- 190 (296)
T TIGR00433 119 GLLDPEQ-AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI------- 190 (296)
T ss_pred CCCCHHH-HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH-------
Confidence 4444332 556778899998876 2221 1122 234455556678899999985 455677765442
Q ss_pred HHHHHHHHHhcCCCCCce-EEEEcccccccCC----CCCCHHHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNV-VIAYEPVWAIGTG----KVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~i-iIAYEPvWAIGTG----~~aspe~iqe~~~~IR~~l~ 242 (260)
+-+.. +..+. .+.+ +-.+=|. =||. .++++++.-++++..|..+.
T Consensus 191 --~~~~~-l~~l~-~~~i~l~~l~p~--~gT~l~~~~~~s~~~~~~~ia~~r~~lp 240 (296)
T TIGR00433 191 --GLALA-LANLP-PESVPINFLVKI--KGTPLADNKELSADDALKTIALARIIMP 240 (296)
T ss_pred --HHHHH-HHhCC-CCEEEeeeeEEc--CCCccCCCCCCCHHHHHHHHHHHHHHCC
Confidence 11111 11121 1111 1122232 1442 24677788888888888764
No 35
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=60.71 E-value=1.1e+02 Score=26.15 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=41.2
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|.|....||+.|+++|||-=+|-..+ .|.....-++.|.++||..
T Consensus 7 ~~q~~id~~~~k~~gi~fviiKateG~~y---~D~~~~~~~~~a~~aGl~~ 54 (184)
T cd06525 7 NWQGNINFNAVKDSGVEVVYIKATEGTTF---VDSYFNENYNGAKAAGLKV 54 (184)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEecCCCcc---cCHhHHHHHHHHHHCCCce
Confidence 57889999999999999999999887644 3667888899999999964
No 36
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=58.96 E-value=91 Score=30.31 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=72.5
Q ss_pred ceEeeeccccC---CCcccccccCHHHHHhcCCCEEEe--eeccccc-------cc-CCCHHHHHHHHHHHHHCCCeEEE
Q 024925 108 IEIAAQNSWVG---KGGAFTGEISVEQLKDIGCKWVVL--GHSERRH-------VI-GEDDQFIGKKAAYALSEGLGVIA 174 (260)
Q Consensus 108 i~vgAQnv~~~---~~GA~TGEISa~mLkd~G~~~viI--GHSERR~-------~f-~Etd~~I~~Kv~~Al~~gL~pIl 174 (260)
+.+|..++... ..|-++.+-....+++.|.++|=| |+..-+. +. .+....+.+.|..|.+.||.+++
T Consensus 55 ~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~i 134 (407)
T COG2730 55 LNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLI 134 (407)
T ss_pred eecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEE
Confidence 33444444333 334467888999999999998743 2222122 22 23333677779999999999887
Q ss_pred E--------eCCcHHHHhcCCh--------HHHHHHHHHHHHhcCCCCCceE---EEEcccccccCCCCCCHHHHHHHHH
Q 024925 175 C--------IGEQLQEREAGKT--------FDVCFQQLKAYADAIPSWDNVV---IAYEPVWAIGTGKVATPEQAQEVHA 235 (260)
Q Consensus 175 C--------IGE~leere~g~~--------~~vl~~Ql~~~l~~i~~~~~ii---IAYEPvWAIGTG~~aspe~iqe~~~ 235 (260)
= .+........+-. ...+..||..-.. +.+.|| ++.||.+ |++....+-.. .+++.
T Consensus 135 D~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~---~~~~VIg~~~~NEP~~-~~~~~~w~~~~-~~A~~ 209 (407)
T COG2730 135 DLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFK---NYDTVIGFELINEPNG-IVTSETWNGGD-DEAYD 209 (407)
T ss_pred EecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhcc---CCCceeeeeeecCCcc-cCCccccccch-HHHHH
Confidence 4 2222211111111 1123333332222 233433 7999999 77666543333 67888
Q ss_pred HHHHHHHh
Q 024925 236 ALRDWLKN 243 (260)
Q Consensus 236 ~IR~~l~~ 243 (260)
.||+.+..
T Consensus 210 ~v~~~i~~ 217 (407)
T COG2730 210 VVRNAILS 217 (407)
T ss_pred HHHhhhhh
Confidence 88755543
No 37
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=58.47 E-value=1.2e+02 Score=27.21 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCC
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD 207 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIl-CIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~ 207 (260)
.+.++++|++++++-- ..+.| +..=++.+.++|+.+++ |--.+.++| ++.+++.-. .
T Consensus 97 i~~~~~aG~~giiipD----l~~ee----~~~~~~~~~~~g~~~i~~i~P~T~~~~------------i~~i~~~~~--~ 154 (242)
T cd04724 97 LRDAKEAGVDGLIIPD----LPPEE----AEEFREAAKEYGLDLIFLVAPTTPDER------------IKKIAELAS--G 154 (242)
T ss_pred HHHHHHCCCcEEEECC----CCHHH----HHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHHhhCC--C
Confidence 6789999999999941 11213 33334789999998888 555554443 344443111 1
Q ss_pred c-eEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 208 N-VVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 208 ~-iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
- .+++.+|+--..++ -++.+.+.++.+|+.
T Consensus 155 ~vy~~s~~g~tG~~~~---~~~~~~~~i~~lr~~ 185 (242)
T cd04724 155 FIYYVSRTGVTGARTE---LPDDLKELIKRIRKY 185 (242)
T ss_pred CEEEEeCCCCCCCccC---CChhHHHHHHHHHhc
Confidence 1 34567785432222 234566677777764
No 38
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=56.84 E-value=1.4e+02 Score=27.23 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI-ACIGEQLQER 183 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pI-lCIGE~leer 183 (260)
.+.++++|++++|+= .+..+....-+..+.++|+.+| +|--.+..+|
T Consensus 108 ~~~~~~aGvdgviip--------Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er 155 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA--------DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER 155 (256)
T ss_pred HHHHHHcCCCEEEEC--------CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 678999999999984 2333445555588999999988 6666665544
No 39
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=55.77 E-value=54 Score=29.19 Aligned_cols=13 Identities=8% Similarity=0.301 Sum_probs=8.1
Q ss_pred CCceEEEcCCccc
Q 024925 84 ADVDVVVAPPFVY 96 (260)
Q Consensus 84 ~~v~VvvaPp~~~ 96 (260)
..+++....|..+
T Consensus 25 ~~vel~~~~~~~~ 37 (273)
T smart00518 25 RSFQLFLGNPRSW 37 (273)
T ss_pred CEEEEECCCCCCC
Confidence 3467777777554
No 40
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=54.79 E-value=60 Score=29.35 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=48.9
Q ss_pred cceEEeeccc----ccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccC
Q 024925 54 KFFVGGNWKC----NGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEIS 128 (260)
Q Consensus 54 k~~IigNWKm----n~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEIS 128 (260)
..+|++.=-. ....+++.+-++...+ .+.|.+..|+......+..... .+..+-. ...+.+. .+|
T Consensus 142 ~~~IiARTDa~~~~~~~~~eai~Ra~ay~~----AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~---~~~~~~~---~~~ 211 (243)
T cd00377 142 DFVIIARTDALLAGEEGLDEAIERAKAYAE----AGADGIFVEGLKDPEEIRAFAEAPDVPLNV---NMTPGGN---LLT 211 (243)
T ss_pred CeEEEEEcCchhccCCCHHHHHHHHHHHHH----cCCCEEEeCCCCCHHHHHHHHhcCCCCEEE---EecCCCC---CCC
Confidence 3556665111 1345666655554443 3567776666656565554332 2233322 2222222 799
Q ss_pred HHHHHhcCCCEEEeeecccc
Q 024925 129 VEQLKDIGCKWVVLGHSERR 148 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR 148 (260)
.+.|+++|++.++.|.+=-|
T Consensus 212 ~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 212 VAELAELGVRRVSYGLALLR 231 (243)
T ss_pred HHHHHHCCCeEEEEChHHHH
Confidence 99999999999999986433
No 41
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.09 E-value=1e+02 Score=27.37 Aligned_cols=106 Identities=9% Similarity=0.008 Sum_probs=47.8
Q ss_pred HHHHHhcCCCEEEee--eccc-cccc-C------CCHHHHHHHHHHHHHCCCeEEEEe-CCcHHHHhcCChHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLG--HSER-RHVI-G------EDDQFIGKKAAYALSEGLGVIACI-GEQLQEREAGKTFDVCFQQLK 197 (260)
Q Consensus 129 a~mLkd~G~~~viIG--HSER-R~~f-~------Etd~~I~~Kv~~Al~~gL~pIlCI-GE~leere~g~~~~vl~~Ql~ 197 (260)
.+.+++.|++.+-++ |.-. ..++ . +.-+.+.+-+..|...|...|+.. |-...........+.+.+-|+
T Consensus 53 ~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (275)
T PRK09856 53 KALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLS 132 (275)
T ss_pred HHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHH
Confidence 446668999865442 2100 0111 1 122345556688899999886542 211000000011122222333
Q ss_pred HHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHH
Q 024925 198 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA 235 (260)
Q Consensus 198 ~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~ 235 (260)
.+.+.. .-.+|.||+||..--.+....+++.+.++.+
T Consensus 133 ~l~~~a-~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~ 169 (275)
T PRK09856 133 ELCEYA-ENIGMDLILEPLTPYESNVVCNANDVLHALA 169 (275)
T ss_pred HHHHHH-HHcCCEEEEecCCCCcccccCCHHHHHHHHH
Confidence 333222 1246899999963111222345555544444
No 42
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.89 E-value=38 Score=30.32 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHH-HHhcCChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHH
Q 024925 156 QFIGKKAAYALSEGLGVIACIGEQLQ-EREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 233 (260)
Q Consensus 156 ~~I~~Kv~~Al~~gL~pIlCIGE~le-ere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~ 233 (260)
+.+.+-++.|...|...|.|-|-..- ..+.....+.+.+.++.+.+.. .-..|.|+|||.. +....+++++-++
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A-~~~GV~i~iE~~~---~~~~~~~~~~~~l 173 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELA-SRASVTLAFEIMD---TPFMNSISKALGY 173 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeecC---CcccCCHHHHHHH
Confidence 34566678888888887766543210 0000112223333444433321 1235789999962 2233455554433
No 43
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=53.66 E-value=47 Score=31.27 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHHHHCC--CeEEEEeCCcHHHHhc-----CChHHHHHHHHHHHHh-------c-----------CCCCCce-EEEEccc
Q 024925 163 AYALSEG--LGVIACIGEQLQEREA-----GKTFDVCFQQLKAYAD-------A-----------IPSWDNV-VIAYEPV 216 (260)
Q Consensus 163 ~~Al~~g--L~pIlCIGE~leere~-----g~~~~vl~~Ql~~~l~-------~-----------i~~~~~i-iIAYEPv 216 (260)
+.|+++| |.|++|.||+.- .+. |....-+.+.++..+. + +|.-..+ ++.=+|+
T Consensus 173 klAl~~Ga~LVPv~~FGE~d~-~~~~~~~~~~~~r~~q~~~~~~~g~~~~~f~Grg~f~~~~~gllP~r~pi~~VVG~PI 251 (297)
T PF03982_consen 173 KLALQHGAPLVPVYSFGENDL-YDQVQNPPGSWLRRFQRWLKKKFGFSLPLFWGRGIFPSYSFGLLPYRRPITTVVGKPI 251 (297)
T ss_pred HhHHHcCCcEEeEEEeCChhh-eeeccCCchhHHHHHHHHHHHHcCcceeeeecccccCCCcccccccCCceEEEeecee
Confidence 6688765 789999999963 222 1112223334443322 1 2311222 2344565
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHhhcCCc
Q 024925 217 WAIGTGKVATPEQAQEVHAALRDWLKNMSQQT 248 (260)
Q Consensus 217 WAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~ 248 (260)
-.=-. ..+|.|+|++.|+.-=+.|.++|++.
T Consensus 252 ~v~~~-~~Pt~e~Vd~~H~~Y~~~L~~LFd~~ 282 (297)
T PF03982_consen 252 PVPKI-ENPTQEDVDKLHARYIEALRELFDKH 282 (297)
T ss_pred cccCC-CCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 23789999999998888888888654
No 44
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=53.20 E-value=1.5e+02 Score=25.48 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=39.3
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|.|-...||+.|+++|+|==.|-..+ .|.....-.+.|.++||.+
T Consensus 8 ~~q~~i~w~~vk~~g~~fv~ikateg~~~---~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 8 QPTSVSTFQCLKNNGYSFAIIRAYRSNGS---FDPNSVTNIKNARAAGLST 55 (196)
T ss_pred cccChhhhhHHHhCCceEEEEEEEccCCc---cChHHHHHHHHHHHcCCcc
Confidence 46789999999999999999965554332 5788888899999999875
No 45
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.47 E-value=46 Score=30.64 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcccc-------------cc--cCCCCCCHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNVVIAYEPVW-------------AI--GTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~iiIAYEPvW-------------AI--GTG~~aspe~iqe~~~~IR~~ 240 (260)
+.++++..++.++...+.+++|+|.| .+ +.|..++|.++.++.+.||+.
T Consensus 162 l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 225 (287)
T cd01137 162 LDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKE 225 (287)
T ss_pred HHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHh
Confidence 34444445555543345688999988 22 468889999999999999874
No 46
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=51.18 E-value=25 Score=29.29 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEEcccccccCCCC--CCHHHHHHHHHHHHHHH
Q 024925 210 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWL 241 (260)
Q Consensus 210 iIAYEPvWAIGTG~~--aspe~iqe~~~~IR~~l 241 (260)
.||+ | +||||.- +..+-++-+.+.||+||
T Consensus 110 SIAf-P--ai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 110 SIAL-C--VISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 4777 8 8999884 55555677888888874
No 47
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=50.23 E-value=1.5e+02 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=32.0
Q ss_pred EeeeccccCCCcccccccCHHHHHhcCCCEEEeeeccccc
Q 024925 110 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRH 149 (260)
Q Consensus 110 vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHSERR~ 149 (260)
.|.+|+.....+.+...+|.|.+.+...+++|+..+..+.
T Consensus 221 aG~~n~~~~~~~~~~~~vs~E~v~~~~pDvIi~~~~~~~~ 260 (319)
T COG0614 221 AGGKNIAADEEGPGGAQVSPEQILAADPDVIILTGSGGSD 260 (319)
T ss_pred hCCCCccccccCCCCCccCHHHHHhcCCCEEEEecCCCCc
Confidence 5888887665555558899999999999999998887764
No 48
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=49.40 E-value=30 Score=31.70 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=68.8
Q ss_pred eecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHH-Hc----------C-CCceEe--eeccccCCCcccc
Q 024925 59 GNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKN-SL----------T-DRIEIA--AQNSWVGKGGAFT 124 (260)
Q Consensus 59 gNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~-~~----------~-~~i~vg--AQnv~~~~~GA~T 124 (260)
-||..-.+.+++.+++..+.. -.|+++--.-.|..+.. .. . +....| ..|+ ..-.|+|+
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~------~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~i-ia~~GPfs 182 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGG------GRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNI-IAMQGPFS 182 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCC------CCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhE-EEEeCCCC
Confidence 478888888888888765431 24455544444444432 10 0 001112 2221 23569999
Q ss_pred cccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 024925 125 GEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 125 GEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~le 181 (260)
=|.--++++++|+++++-=-| |.+ -...|+.+|++.|+.+|+ |.-+..
T Consensus 183 ~e~n~al~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP~~ 230 (249)
T PF02571_consen 183 KELNRALFRQYGIDVLVTKES------GGS--GFDEKIEAARELGIPVIV-IKRPPE 230 (249)
T ss_pred HHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCCCC
Confidence 999999999999999986333 333 467899999999999887 555543
No 49
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.95 E-value=53 Score=27.09 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEe-C--CcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHH
Q 024925 155 DQFIGKKAAYALSEGLGVIACI-G--EQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQ 231 (260)
Q Consensus 155 d~~I~~Kv~~Al~~gL~pIlCI-G--E~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iq 231 (260)
.+.+.+-++.|...|...|+.- | +...........+.+.+-|+.+++... -..+.|++||..-.......+.+++.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAE-EYGVRIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHH-HHTSEEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhh-hhcceEEEecccCccccchhhHHHHH
Confidence 3445555566666676666555 2 011000000112222222333222211 11357788876555444444445544
Q ss_pred HHHHH
Q 024925 232 EVHAA 236 (260)
Q Consensus 232 e~~~~ 236 (260)
++++.
T Consensus 149 ~~l~~ 153 (213)
T PF01261_consen 149 RLLEE 153 (213)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44443
No 50
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.54 E-value=2e+02 Score=25.31 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhhccccCCceEEEcCCc------ccHHHHHHHcC---CCceEeeeccccCCCcccccccCHHHHHhcC
Q 024925 66 TKESITKLVSDLNDAKLEADVDVVVAPPF------VYIDQVKNSLT---DRIEIAAQNSWVGKGGAFTGEISVEQLKDIG 136 (260)
Q Consensus 66 t~~~~~~l~~~l~~~~~~~~v~VvvaPp~------~~L~~v~~~~~---~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G 136 (260)
+.++..++++.+.+.-. ..+++....++ .....+.+.+. .+..+.+= ... |+--.+.+++.|
T Consensus 17 s~e~~~~i~~~L~~~GV-~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l----~~~----~~~~i~~a~~~g 87 (265)
T cd03174 17 STEDKLEIAEALDEAGV-DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQAL----VRN----REKGIERALEAG 87 (265)
T ss_pred CHHHHHHHHHHHHHcCC-CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEE----ccC----chhhHHHHHhCC
Confidence 67888888888876421 23555544444 55554444443 12333321 111 366799999999
Q ss_pred CCEEEeeeccc--c------cccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCc
Q 024925 137 CKWVVLGHSER--R------HVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN 208 (260)
Q Consensus 137 ~~~viIGHSER--R------~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~ 208 (260)
++++-+--+=- . +-..+.-+.+..-++.+.+.|+.+.+++-.... ...+.+.+.+.++.+.+. . .+.
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---~~~~~~~l~~~~~~~~~~-g-~~~ 162 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG---CKTDPEYVLEVAKALEEA-G-ADE 162 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC---CCCCHHHHHHHHHHHHHc-C-CCE
Confidence 99887754311 0 011123345667789999999999998843320 013455555555544332 1 122
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHH
Q 024925 209 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 209 iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~ 242 (260)
|-+-+. +| .++|+++.+..+.+|+.+.
T Consensus 163 --i~l~Dt----~G-~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 163 --ISLKDT----VG-LATPEEVAELVKALREALP 189 (265)
T ss_pred --EEechh----cC-CcCHHHHHHHHHHHHHhCC
Confidence 223332 23 5889999999999988653
No 51
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=46.10 E-value=36 Score=25.10 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
+..|++.|++..+ -.+.+ .+.+|++.|.+.|..-++.||+..
T Consensus 24 a~~Lr~~g~~v~~-d~~~~---------~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 24 YAELQAAGVDVLL-DDRNE---------RPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred HHHHHHCCCEEEE-ECCCC---------CcccchhHHHhcCCCEEEEECCch
Confidence 5567777765544 22222 378999999999999999999774
No 52
>PRK08508 biotin synthase; Provisional
Probab=46.08 E-value=1.6e+02 Score=27.07 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=62.3
Q ss_pred ccccCHHHHH---hcCCCEEEeeecccccccC-----CCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCChHHH
Q 024925 124 TGEISVEQLK---DIGCKWVVLGHSERRHVIG-----EDDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDV 191 (260)
Q Consensus 124 TGEISa~mLk---d~G~~~viIGHSERR~~f~-----Etd~~I~~Kv~~Al~~gL~p----IlCIGE~leere~g~~~~v 191 (260)
.|..+.++|+ ++|++.+-+|.-=++.+|. .+-+.+-+-++.|.+.|+.+ |+=.||+.++|.
T Consensus 97 ~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~------- 169 (279)
T PRK08508 97 NGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRI------- 169 (279)
T ss_pred CCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHH-------
Confidence 5666766655 5599888877544444443 33344555567799999977 777789988773
Q ss_pred HHHHHHHHHhcCCCCCceEEE---EcccccccCCCCCCHHHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNVVIA---YEPVWAIGTGKVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~iiIA---YEPvWAIGTG~~aspe~iqe~~~~IR~~l~ 242 (260)
+-+. .+..+.. +.+-+- .-|-+-.+ ...++++++-.+++..|-.+-
T Consensus 170 --~~l~-~lr~L~~-~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~lp 218 (279)
T PRK08508 170 --SFLK-SLASLSP-HSTPINFFIPNPALPLK-APTLSADEALEIVRLAKEALP 218 (279)
T ss_pred --HHHH-HHHcCCC-CEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCC
Confidence 1122 1222321 112122 22222222 235789999999988887763
No 53
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=45.99 E-value=37 Score=25.21 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=32.1
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~le 181 (260)
+..|++.|++..+- ..+..+++|++.|...|..-++.||+...
T Consensus 22 ~~~L~~~gi~v~~d----------~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 22 ANKLRKAGIRVELD----------DSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHTTSEEEEE----------SSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHCCCEEEEE----------CCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 45677777543333 23444999999999999999999997753
No 54
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=45.98 E-value=2e+02 Score=24.92 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=35.2
Q ss_pred CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 128 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
.++.+.++|+++|++|.+-... +.+..=++.+...|+.+++++-...
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~------~~~~~~~~~~~~~g~~~~v~v~~~~ 132 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDD------EQLKELYELARELGMEVLVEVHDEE 132 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCH------HHHHHHHHHHHHcCCeEEEEECCHH
Confidence 5788999999999999986542 3344444667888999999886443
No 55
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.81 E-value=2.4e+02 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=22.2
Q ss_pred HHHHHHCCCeEEE---EeCCcHHHHhcCChHHHHHHHHHHHHh
Q 024925 162 AAYALSEGLGVIA---CIGEQLQEREAGKTFDVCFQQLKAYAD 201 (260)
Q Consensus 162 v~~Al~~gL~pIl---CIGE~leere~g~~~~vl~~Ql~~~l~ 201 (260)
++.|++.|+..|- -+-|..-.+.-+.+.+...+++.....
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~ 121 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAE 121 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4778888865432 223333356667776555555544443
No 56
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=44.24 E-value=1.3e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCH-HHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDD-QFIGKKAAYA 165 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd-~~I~~Kv~~A 165 (260)
+..+.+.|++++++| |.+|+..| ....++++..
T Consensus 178 ~~~~~~aGad~iV~G----r~I~~~~d~~~~~~~l~~~ 211 (215)
T PRK13813 178 AADAIKAGADYVIVG----RSIYNAADPREAAKAINEE 211 (215)
T ss_pred HHHHHHcCCCEEEEC----cccCCCCCHHHHHHHHHHH
Confidence 788899999999999 67775433 3444444443
No 57
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=44.18 E-value=67 Score=32.42 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHH
Q 024925 190 DVCFQQLKAYADAIPSWDNVVIAYEPVW---------------AIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 190 ~vl~~Ql~~~l~~i~~~~~iiIAYEPvW---------------AIGTG~~aspe~iqe~~~~IR~~ 240 (260)
+.+.++++..++.++.-.+.+|+|+|.| .+..|..+++.++.++.+.||+.
T Consensus 354 ~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~ 419 (479)
T TIGR03772 354 ERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENL 419 (479)
T ss_pred HHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHc
Confidence 3455556666666664456789999988 24568889999999999999853
No 58
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=44.02 E-value=2.2e+02 Score=24.84 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=40.5
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|-|.|..+.+++-|+++|+|-=+|=..+. |.....-.+.|.+.||..
T Consensus 15 ~~qg~IDw~~v~~~gi~Fv~iKATEG~~~~---D~~f~~n~~~A~~~Gl~v 62 (190)
T cd06419 15 QDDGYIDFNSLQSNGISFVYLRATQGASYF---DDNFLSNFSRAQGTGLSV 62 (190)
T ss_pred CCCCccCHHHHHhCCCeEEEEEeecCCCcc---ChhHHHHHHHHHHCCCCE
Confidence 456999999999999999999888877654 556677789999999985
No 59
>PRK06934 flavodoxin; Provisional
Probab=43.79 E-value=23 Score=32.16 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcH-----------HHHhcCChHHHHHHHHHHHHhcCCCCCceEEEEccccc
Q 024925 156 QFIGKKAAYALSEGLGVIACIGEQL-----------QEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWA 218 (260)
Q Consensus 156 ~~I~~Kv~~Al~~gL~pIlCIGE~l-----------eere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWA 218 (260)
+.|++.++..+...|--|-....-. .+++.+.. -.|+.....+++++.|+|.| |+|.
T Consensus 74 k~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~-----P~L~~~~~dl~~YD~I~IG~-PIWw 141 (221)
T PRK06934 74 QYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGR-----PEMREKIQNLADYDQIFIGY-PIWW 141 (221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCC-----HHHHHHHHhHHhCCEEEEEc-chhh
Confidence 3477777878777777776543211 11111211 12333334455678899999 9995
No 60
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=41.86 E-value=1.1e+02 Score=27.51 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=13.2
Q ss_pred ceEEEEcccccccCCCCCCHHHHHHHHHH
Q 024925 208 NVVIAYEPVWAIGTGKVATPEQAQEVHAA 236 (260)
Q Consensus 208 ~iiIAYEPvWAIGTG~~aspe~iqe~~~~ 236 (260)
.+.|++||.+-..+-...+++++.++.+.
T Consensus 136 gi~l~lEn~~~~~~~~~~t~~~~~~li~~ 164 (279)
T cd00019 136 GVVIALETMAGQGNEIGSSFEELKEIIDL 164 (279)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHh
Confidence 45566666553333233444444444433
No 61
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=41.17 E-value=43 Score=31.31 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=43.8
Q ss_pred CCCeEEEEeCCcHHHHh---cCChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 168 EGLGVIACIGEQLQERE---AGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 168 ~gL~pIlCIGE~leere---~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
.|+..|-|+==-.+.+- -....+++.+||++++.++ |+-|+=||.-+++|.|..+.+.++++
T Consensus 33 yg~saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~-----------~v~avKtGML~~~eiie~va~~l~~~ 97 (263)
T COG0351 33 YGMSAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDI-----------PVDAVKTGMLGSAEIIEVVAEKLKKY 97 (263)
T ss_pred ccceEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 56677766642221110 1136889999999998876 55678889999999998888888765
No 62
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.18 E-value=74 Score=29.79 Aligned_cols=47 Identities=6% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCCceEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNVVIAYEPVWA---------------IGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~iiIAYEPvWA---------------IGTG~~aspe~iqe~~~~IR~~ 240 (260)
+..+++..++.++ .+.+|+|+|.|. +++|..++|.++.++.+.|++.
T Consensus 190 l~~~~~~~l~~~~--~~~~i~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 251 (311)
T PRK09545 190 TDKQIGNQLAPVK--GKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQ 251 (311)
T ss_pred HHHHHHHHhhccC--CCcEEEECchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHc
Confidence 4444444444332 345788999983 3468889999999999999864
No 63
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.11 E-value=68 Score=27.36 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=39.7
Q ss_pred ccccccCH-HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISV-EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa-~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|+|.. ..+++.|+++|||-=+|-..+ .|.....-++.|.++||.+
T Consensus 7 ~~qg~id~~~~~~~~g~~fviikateG~~~---~D~~f~~n~~~a~~aGl~v 55 (177)
T cd06523 7 EWQGPINWDYDTLSKQLDLVIIRVQYGSNY---VDLKYKNNIKEFKKRGIPF 55 (177)
T ss_pred ccCCCCCHHHHHHhCCCCEEEEEEeCCCcc---cCHHHHHHHHHHHHcCCCe
Confidence 46788988 467889999999998886543 7788888899999999975
No 64
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=40.02 E-value=1e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=25.4
Q ss_pred EEEEcccccccCCCC--CCHHHHHHHHHHHHHHHHhhc
Q 024925 210 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKNMS 245 (260)
Q Consensus 210 iIAYEPvWAIGTG~~--aspe~iqe~~~~IR~~l~~~~ 245 (260)
-||+ | +||||.- +..+-++-+.+.|++++.+..
T Consensus 130 SIAf-P--aIstG~~g~P~~~aA~i~~~~i~~~l~~~~ 164 (186)
T cd02904 130 SIAF-P--SLPSGRNGFPKQTAAQLILKAISSYFVSTM 164 (186)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4677 8 9999984 555666788899999998653
No 65
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=39.85 E-value=3.8e+02 Score=26.37 Aligned_cols=157 Identities=21% Similarity=0.305 Sum_probs=108.5
Q ss_pred ceEEeecccccCHHHHHHHHHHHhhcc--ccCC--ceEEEcCCcccHHHHHHH--cC-CCceEeeeccccCCCccccccc
Q 024925 55 FFVGGNWKCNGTKESITKLVSDLNDAK--LEAD--VDVVVAPPFVYIDQVKNS--LT-DRIEIAAQNSWVGKGGAFTGEI 127 (260)
Q Consensus 55 ~~IigNWKmn~t~~~~~~l~~~l~~~~--~~~~--v~VvvaPp~~~L~~v~~~--~~-~~i~vgAQnv~~~~~GA~TGEI 127 (260)
-+++|-=..-.+.+....+++.+.+.. ...+ +.+=+.|-......+... .. .++.+|-|..+
T Consensus 91 i~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~----------- 159 (416)
T COG0635 91 IYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFN----------- 159 (416)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCC-----------
Confidence 367777667777888888888887654 1222 335568877776665442 22 78899999877
Q ss_pred CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCChHHHHHHHHHHHHhcCC
Q 024925 128 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIAC---IGEQLQEREAGKTFDVCFQQLKAYADAIP 204 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlC---IGE~leere~g~~~~vl~~Ql~~~l~~i~ 204 (260)
.++||-+| |.+- .+.+...+..+.+.|+..|-| -|-+ ++|.+.+.+-|+.+++.-|
T Consensus 160 -~~~lk~lg----------R~h~----~~~~~~a~~~~~~~g~~~in~DLIyglP------~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 160 -DEVLKALG----------RIHD----EEEAKEAVELARKAGFTSINIDLIYGLP------GQTLESLKEDLEQALELGP 218 (416)
T ss_pred -HHHHHHhc----------CCCC----HHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCHHHHHHHHHHHHhCCC
Confidence 56888885 4433 345667778899888887643 3444 5688888888887777544
Q ss_pred C-CCceEEEEcccccccC----CC-CCCHHHHHHHHHHHHHHHHh
Q 024925 205 S-WDNVVIAYEPVWAIGT----GK-VATPEQAQEVHAALRDWLKN 243 (260)
Q Consensus 205 ~-~~~iiIAYEPvWAIGT----G~-~aspe~iqe~~~~IR~~l~~ 243 (260)
+ .+---++.||-+.... |+ .+++++..++++.+.+.|.+
T Consensus 219 dhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~ 263 (416)
T COG0635 219 DHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEK 263 (416)
T ss_pred CEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHH
Confidence 2 2222378899887653 33 58888889999999999876
No 66
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=39.76 E-value=31 Score=32.77 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=30.6
Q ss_pred CHHHHHhcCCCEEEeeec-----cc---ccccCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 024925 128 SVEQLKDIGCKWVVLGHS-----ER---RHVIGEDDQFIGKKAAYALSEGLGVIACIG 177 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHS-----ER---R~~f~Etd~~I~~Kv~~Al~~gL~pIlCIG 177 (260)
..++++++|+++|-||.- |- +--|..-|..| +.|.++||.+|+|+.
T Consensus 15 d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l----~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVL----DLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHH----HHHHCTT-EEEEEEC
T ss_pred HHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHH----HHHHhccCeEEEEec
Confidence 357899999999999862 22 22455555555 789999999999997
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.75 E-value=3.1e+02 Score=25.43 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHCCCeEEEEe---CCcHHHHhcCChHHHHHHHHHHHHhc
Q 024925 163 AYALSEGLGVIACI---GEQLQEREAGKTFDVCFQQLKAYADA 202 (260)
Q Consensus 163 ~~Al~~gL~pIlCI---GE~leere~g~~~~vl~~Ql~~~l~~ 202 (260)
+.|++.|+..|-.. .|....+..+++.+...+++...++.
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ 128 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEA 128 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 66777777654333 33334456667766666666555543
No 68
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=39.03 E-value=59 Score=24.40 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=33.3
Q ss_pred ccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 024925 124 TGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 124 TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~le 181 (260)
.|.--++.|++.||+.+|.|+-- +.-. ....+.|+.++...+++.+
T Consensus 51 ~~~~~~~~l~~~~v~~vi~~~iG------~~~~------~~l~~~gI~v~~~~~~~i~ 96 (103)
T cd00851 51 AGGKAAEFLADEGVDVVIVGGIG------PRAL------NKLRNAGIKVYKGAEGTVE 96 (103)
T ss_pred CchHHHHHHHHcCCCEEEeCCCC------cCHH------HHHHHCCCEEEEcCCCCHH
Confidence 36788999999999999998633 3222 3356679999987765543
No 69
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=38.55 E-value=69 Score=27.65 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=38.1
Q ss_pred cccccc---CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEI---SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEI---Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|.| ....+|+.|+++|||-=+|=..+ .|.....-++.|.++||.+
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikateG~~~---~D~~~~~n~~~A~~aGl~v 58 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLTEGTTY---RNPYAASQIANAKAAGLKV 58 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEcCCCCc---cChHHHHHHHHHHHCCCee
Confidence 467888 57789999999999987775432 4667778889999999964
No 70
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=38.36 E-value=2.5e+02 Score=23.78 Aligned_cols=89 Identities=13% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCc
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN 208 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~ 208 (260)
+++++++|++++++ |-+- + +....-++.+.+.|+.+++=+..+.. .+.++.+.... +
T Consensus 72 ~~~~~~~gadgv~v-h~~~------~-~~~~~~~~~~~~~g~~~~~~~~~~t~-----------~e~~~~~~~~~-d--- 128 (210)
T TIGR01163 72 IEDFAEAGADIITV-HPEA------S-EHIHRLLQLIKDLGAKAGIVLNPATP-----------LEFLEYVLPDV-D--- 128 (210)
T ss_pred HHHHHHcCCCEEEE-ccCC------c-hhHHHHHHHHHHcCCcEEEEECCCCC-----------HHHHHHHHhhC-C---
Confidence 88999999999988 6532 1 22334446677788887775443210 11233333322 1
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHH
Q 024925 209 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 209 iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~ 242 (260)
+|.|=|+..-+||....++.. +..+.+|+.+.
T Consensus 129 -~i~~~~~~~g~tg~~~~~~~~-~~i~~i~~~~~ 160 (210)
T TIGR01163 129 -LVLLMSVNPGFGGQKFIPDTL-EKIREVRKMID 160 (210)
T ss_pred -EEEEEEEcCCCCcccccHHHH-HHHHHHHHHHH
Confidence 233434444556655555444 35555666554
No 71
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.94 E-value=1.6e+02 Score=26.93 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=22.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 218 AIGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 218 AIGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
.||++..++|..+.++.+.+.+++.+.
T Consensus 258 ~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 258 QVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred EEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 567777778999999999999998765
No 72
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=37.44 E-value=80 Score=27.14 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=40.9
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|.|....||+.|+++|+|==+|...-=.-.|.....-++.|.++||..
T Consensus 8 ~~q~~id~~~~k~~g~~fviiKateG~~g~~~~D~~~~~~~~~A~~aGl~~ 58 (191)
T cd06414 8 EWQGDIDWKKVKASGVDFAIIRAGYGGYGELQEDKYFEENIKGAKAAGIPV 58 (191)
T ss_pred ccCCccCHHHHHhCCCCEEEEEEecCCCcccccCHHHHHHHHHHHHCCCce
Confidence 467889999999999999999888765400136778888899999999964
No 73
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=36.70 E-value=59 Score=30.70 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=34.6
Q ss_pred HHHHHhcCCCEEEe-----eecccccccCCC-HHHHHHHHHHHHHCCCeEEEEeC
Q 024925 129 VEQLKDIGCKWVVL-----GHSERRHVIGED-DQFIGKKAAYALSEGLGVIACIG 177 (260)
Q Consensus 129 a~mLkd~G~~~viI-----GHSERR~~f~Et-d~~I~~Kv~~Al~~gL~pIlCIG 177 (260)
...+|++|++.|.+ -|.+++-.|.-+ +..+.+=++.|.++||-+|+..|
T Consensus 30 l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 30 LQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp HHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEeccc
Confidence 46788999998876 577777776655 44677778999999999999988
No 74
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=36.33 E-value=49 Score=24.40 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=37.3
Q ss_pred CcccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 024925 120 GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 120 ~GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~le 181 (260)
.+...|.-.+..|.+.||+.+|.|+=-.. - . ....+.|+.++.+.+.+.+
T Consensus 37 ~~~~~~~~~~~~l~~~~v~~li~~~iG~~------~--~----~~L~~~gI~v~~~~~~~i~ 86 (94)
T PF02579_consen 37 EGGGGGDKIAKFLAEEGVDVLICGGIGEG------A--F----RALKEAGIKVYQGAGGDIE 86 (94)
T ss_dssp CSSCHSTHHHHHHHHTTESEEEESCSCHH------H--H----HHHHHTTSEEEESTSSBHH
T ss_pred cccccchhHHHHHHHcCCCEEEEeCCCHH------H--H----HHHHHCCCEEEEcCCCCHH
Confidence 34477788899999999999999984332 1 1 4467789999998666654
No 75
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=35.81 E-value=78 Score=29.83 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCHHHHHhcCCCEEEeeecccccc
Q 024925 84 ADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHV 150 (260)
Q Consensus 84 ~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHSERR~~ 150 (260)
.+.|.++.|....+..+..... -+..+-+ |+- . |.-|+.+|.+.|+++|++.|+.|++=-|..
T Consensus 178 AGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~-n~~--~-~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa 241 (292)
T PRK11320 178 AGADMIFPEAMTELEMYRRFADAVKVPILA-NIT--E-FGATPLFTTEELASAGVAMVLYPLSAFRAM 241 (292)
T ss_pred cCCCEEEecCCCCHHHHHHHHHhcCCCEEE-Eec--c-CCCCCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 5678888887777777665432 1222222 332 2 335888999999999999999998765543
No 76
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=35.63 E-value=64 Score=27.90 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=38.6
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|-|.|..+ +|..|+++|||-=.|...+ .|.....-++.|.++||..
T Consensus 8 ~~qg~i~~~-~~~~g~~fviiKateG~~~---~d~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 8 SYQGTDLTA-YGQAGAKFAIVKISEGTNY---VNPKASAQVSSAIANGKMT 54 (196)
T ss_pred hcCCcccHH-HHhCCCcEEEEEEcCCCcc---CCccHHHHHHHHHHCCCee
Confidence 567888876 9999999999999888754 4556778889999999964
No 77
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=35.43 E-value=77 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=39.9
Q ss_pred ccccccCHHH----HHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 122 AFTGEISVEQ----LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 122 A~TGEISa~m----Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.|.|.|.... +|+-|+++|||-=+|--.+ .|.....-++.|.+.||.+
T Consensus 7 ~~qg~i~~~~~~~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 7 HYQGKIDWQKVKAKVKDSPVAFVFIKATEGVDI---VDPDFPTNWEGAKEAGIIR 58 (194)
T ss_pred CcCCCCChhhhhhhhhhcCccEEEEEecCCCCc---cChHHHHHHHHHHHcCCce
Confidence 5788898888 8999999999998886433 4667788889999999964
No 78
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=35.32 E-value=69 Score=28.51 Aligned_cols=42 Identities=36% Similarity=0.382 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 188 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 188 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
..+.+.+||+.+++.+ |+-+|.+|...+++.++.+.+.+++.
T Consensus 51 ~~~~~~~q~~~~~~d~-----------~~~aikiG~l~~~~~~~~i~~~~~~~ 92 (254)
T TIGR00097 51 PPDFVEAQLDAVFSDI-----------PVDAAKTGMLASAEIVEAVARKLREY 92 (254)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 5788999999988854 55678888888888888888887654
No 79
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=34.58 E-value=3.1e+02 Score=24.42 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccc----cCHHHHHhcCCCEEEeeecccccccCCCHHHHH
Q 024925 84 ADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGE----ISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIG 159 (260)
Q Consensus 84 ~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGE----ISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~ 159 (260)
.+.+.++|++.- +..+++.....+..-+-.+.+. |.-.|+ .++....+.|++++++| |--+-.++-....
T Consensus 147 ~g~dgvv~~~~~-~~~ir~~~~~~~~~v~pGI~~~--g~~~~dq~~~~~~~~ai~~Gad~iVvG---R~I~~a~dP~~~a 220 (230)
T PRK00230 147 AGLDGVVCSAQE-AAAIREATGPDFLLVTPGIRPA--GSDAGDQKRVMTPAQAIAAGSDYIVVG---RPITQAADPAAAY 220 (230)
T ss_pred cCCeEEEeChHH-HHHHHhhcCCceEEEcCCcCCC--CCCcchHHHHhCHHHHHHcCCCEEEEC---CcccCCCCHHHHH
Confidence 467888887544 4566655444444333444431 222233 25777789999999999 3333344445565
Q ss_pred HHHHHHH
Q 024925 160 KKAAYAL 166 (260)
Q Consensus 160 ~Kv~~Al 166 (260)
+++...+
T Consensus 221 ~~i~~~i 227 (230)
T PRK00230 221 EAILAEI 227 (230)
T ss_pred HHHHHHh
Confidence 5555544
No 80
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=34.56 E-value=3.8e+02 Score=25.00 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=61.1
Q ss_pred ccCHHHHHhcCCCEEEe-----eecccccc-cCC--CHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCChHHHHH
Q 024925 126 EISVEQLKDIGCKWVVL-----GHSERRHV-IGE--DDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDVCF 193 (260)
Q Consensus 126 EISa~mLkd~G~~~viI-----GHSERR~~-f~E--td~~I~~Kv~~Al~~gL~p----IlCIGE~leere~g~~~~vl~ 193 (260)
+=..+.||++|++.+-. .+.|-|+. +.. +-+..-+-++.|.+.|+.+ |+=.||+.+++.. ..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~------~l 216 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIE------HL 216 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHH------HH
Confidence 44568899999987653 23454443 332 5555667778888998863 3334688876631 12
Q ss_pred HHHHHHHhcCCCCCc-eEEEEcccccccCC----CCCCHHHHHHHHHHHHHHHH
Q 024925 194 QQLKAYADAIPSWDN-VVIAYEPVWAIGTG----KVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 194 ~Ql~~~l~~i~~~~~-iiIAYEPvWAIGTG----~~aspe~iqe~~~~IR~~l~ 242 (260)
..|+.+-........ |-+-|-|. ||- .++++++.-.+++..|-.+-
T Consensus 217 ~~l~~l~~~~~~~~~fIP~~f~p~---~tpl~~~~~~~~~e~l~~iA~~Rl~lp 267 (340)
T TIGR03699 217 ERIRELQDKTGGFTAFIPWTFQPG---NTELGKKRPATSTEYLKVLAISRIFLD 267 (340)
T ss_pred HHHHHhchhhCCeeEEEeecccCC---CCcccCCCCCCHHHHHHHHHHHHHcCC
Confidence 222221110001111 11234442 553 24789999999999888774
No 81
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=34.12 E-value=83 Score=28.71 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=46.5
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCC-----cHHHH------hcCChHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE-----QLQER------EAGKTFDVCFQQLK 197 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE-----~leer------e~g~~~~vl~~Ql~ 197 (260)
..++|++|++.+=+. ..-++.+.. ..|=+.||.++--+.- ..... ......+...++++
T Consensus 42 ~~l~k~~G~N~iR~~------h~p~~~~~~----~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (298)
T PF02836_consen 42 LELMKEMGFNAIRTH------HYPPSPRFY----DLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELR 111 (298)
T ss_dssp HHHHHHTT-SEEEET------TS--SHHHH----HHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHH
T ss_pred HHHHHhcCcceEEcc------cccCcHHHH----HHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHH
Confidence 345899999999443 345666666 7799999998753321 21000 01123345566776
Q ss_pred HHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHH
Q 024925 198 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALR 238 (260)
Q Consensus 198 ~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR 238 (260)
..+...-.-..| | .|.+|.-. ...+.++++.+.+|
T Consensus 112 ~~v~~~~NHPSI-i----~W~~gNE~-~~~~~~~~l~~~~k 146 (298)
T PF02836_consen 112 EMVRRDRNHPSI-I----MWSLGNES-DYREFLKELYDLVK 146 (298)
T ss_dssp HHHHHHTT-TTE-E----EEEEEESS-HHHHHHHHHHHHHH
T ss_pred HHHHcCcCcCch-h----eeecCccC-ccccchhHHHHHHH
Confidence 665433222234 3 27888443 22333344444443
No 82
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=34.02 E-value=82 Score=30.27 Aligned_cols=44 Identities=27% Similarity=0.167 Sum_probs=30.6
Q ss_pred CHHHHHhcCCCEEEeeecccccccCC-------CHHHHHHHHHHHHHCCCeEEEEeC
Q 024925 128 SVEQLKDIGCKWVVLGHSERRHVIGE-------DDQFIGKKAAYALSEGLGVIACIG 177 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHSERR~~f~E-------td~~I~~Kv~~Al~~gL~pIlCIG 177 (260)
--+.|||.|+++|=+ +++.+ +-+.+.+.+++|.++||++.|+.-
T Consensus 29 ~~~ilk~~G~N~vRl------Rvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfH 79 (332)
T PF07745_consen 29 LFQILKDHGVNAVRL------RVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFH 79 (332)
T ss_dssp HHHHHHHTT--EEEE------EE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHhcCCCeEEE------EeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeec
Confidence 457899999999943 44433 335788899999999999999986
No 83
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=33.65 E-value=1.4e+02 Score=25.22 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.9
Q ss_pred EEEEcccccccCCCC--CCHHHHHHHHHHHHHHHHhh
Q 024925 210 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 210 iIAYEPvWAIGTG~~--aspe~iqe~~~~IR~~l~~~ 244 (260)
-||+ | +||||.- +..+-++.+.+.+++++.+.
T Consensus 115 SIA~-P--~lgtG~~g~p~~~~a~~~~~~i~~fl~~~ 148 (175)
T cd02907 115 SIAI-P--AISSGIFGFPLERCVETIVEAVKEFLETK 148 (175)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3566 8 8888873 55556688889999998875
No 84
>PRK04531 acetylglutamate kinase; Provisional
Probab=33.64 E-value=81 Score=30.92 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=44.7
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHH-----------HHHHHHHHHCCCeEEE-EeCCcHHHHhcCChHHHHHHHHH
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFI-----------GKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLK 197 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I-----------~~Kv~~Al~~gL~pIl-CIGE~leere~g~~~~vl~~Ql~ 197 (260)
++|+..|+....++. +|..-.|+-+.+ ...+..+++.|..||+ |+|++..-..-+...|.+...|+
T Consensus 81 ~~l~~~gie~~~v~G--~RVTd~~tl~vv~~~l~~vn~~lv~~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA 158 (398)
T PRK04531 81 AELDAAGIEKETVNG--LRVTSPEALAIVRKVFQRSNLDLVEAVESSLRAGSIPVIASLGETPSGQILNINADVAANELV 158 (398)
T ss_pred HHHHHcCCCcEEECC--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHH
Confidence 677777777766655 444333332222 2226779999999998 57765321111225666666666
Q ss_pred HHHhcCCCCCceEEEE
Q 024925 198 AYADAIPSWDNVVIAY 213 (260)
Q Consensus 198 ~~l~~i~~~~~iiIAY 213 (260)
..|. ..++++..
T Consensus 159 ~aL~----a~KLIflt 170 (398)
T PRK04531 159 SALQ----PYKIIFLT 170 (398)
T ss_pred HHcC----CCEEEEEE
Confidence 5554 24556555
No 85
>PRK12616 pyridoxal kinase; Reviewed
Probab=33.45 E-value=75 Score=28.74 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 187 KTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 187 ~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
...+++.+||+.+++++ |+-+|=+|...+.+.++.+.+++++.
T Consensus 57 ~~~~~i~~ql~~l~~d~-----------~~~aikiG~l~s~~~i~~i~~~l~~~ 99 (270)
T PRK12616 57 IDTDTIRAQLSTIVDGI-----------GVDAMKTGMLPTVDIIELAADTIKEK 99 (270)
T ss_pred CCHHHHHHHHHHHHcCC-----------CCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 35778999999988764 56678888888899888888888664
No 86
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=33.14 E-value=78 Score=29.71 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=40.9
Q ss_pred CCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCHHHHHhcCCCEEEeeeccccc
Q 024925 84 ADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRH 149 (260)
Q Consensus 84 ~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHSERR~ 149 (260)
.+.|.++.|....+..+..... -+..+ ++.... |.-|+..|.+.|+++|++.|+.|..=-|.
T Consensus 173 AGAD~vfi~g~~~~e~i~~~~~~i~~Pl---~~n~~~-~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 173 AGADMIFPEALTSLEEFRQFAKAVKVPL---LANMTE-FGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhcCCCE---EEEecc-CCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 4678888887777776654332 12222 222222 23488899999999999999999765554
No 87
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=32.83 E-value=77 Score=30.28 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 187 KTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 187 ~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
...+++.+||+.+++++ |+-+|=+|..++.+.|+.++++|++.
T Consensus 56 v~~~~i~~Ql~all~D~-----------~i~aIKiGmL~s~e~i~~v~~~l~~~ 98 (321)
T PTZ00493 56 IEEKFIVEQLDSIFADV-----------TIDVVKLGVLYSKKIISLVHNYITNM 98 (321)
T ss_pred CCHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHHh
Confidence 35788999999998864 66788889999999999998888665
No 88
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=32.42 E-value=3e+02 Score=23.02 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=65.8
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCChHHHHHHHHH
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI----ACIGEQLQEREAGKTFDVCFQQLK 197 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pI----lCIGE~leere~g~~~~vl~~Ql~ 197 (260)
.|.|.+....|++-|+++|||-=+|--.+ .|.....-++.|.++||..= .|- +.. -..|.+
T Consensus 7 ~~q~~~~~~~~~~~g~~fviik~t~G~~~---~D~~~~~~~~~a~~aGl~~G~Yhy~~~-~~~-----------a~~qa~ 71 (186)
T cd00599 7 SWQGSIDWNAVKAAGIDFVFIKATEGTTY---VDPKFATNRARARAAGLLVGAYHFARP-CAN-----------AEAQAD 71 (186)
T ss_pred CCCCCCCHHHHHhCCCcEEEEEEeCCCCc---cChHHHHHHHHHHHCCCceEEEEEecC-CCC-----------HHHHHH
Confidence 57888999999999999999998887544 56667777889999998531 222 111 234555
Q ss_pred HHHhcCCC---CCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 024925 198 AYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQ 246 (260)
Q Consensus 198 ~~l~~i~~---~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~ 246 (260)
-+++.+.. ..-+.+-+|..-.-+ ++....+.+....+.+.+..|
T Consensus 72 ~fi~~~~~~~~~~~~~lDvE~~~~~~-----~~~~~~~~~~~f~~~~~~~gg 118 (186)
T cd00599 72 NFVNTVPRDPGSLPLVLDVEDTGGGC-----SAAALAAWLNAFLNEVEALTG 118 (186)
T ss_pred HHHHHccCcCCCCCeEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHHHC
Confidence 55555542 334667788732111 445444444444555555544
No 89
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=32.37 E-value=4.8e+02 Score=25.42 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=62.8
Q ss_pred HHHHHhcCCCEEEeeec-----ccccc-cCCCHHHHHHHHHHHHHCCCeEE-E--EeCCcHHHHhcCChHHHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGHS-----ERRHV-IGEDDQFIGKKAAYALSEGLGVI-A--CIGEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 129 a~mLkd~G~~~viIGHS-----ERR~~-f~Etd~~I~~Kv~~Al~~gL~pI-l--CIGE~leere~g~~~~vl~~Ql~~~ 199 (260)
.+.|+++|++.+-+|=- +.+.+ -+.+-+.+...++.+.+.|+..| + =+|=+ |.|.+.+.+-++.+
T Consensus 144 l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP------~qt~e~~~~~l~~~ 217 (430)
T PRK08208 144 LALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP------GQTHASWMESLDQA 217 (430)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHHH
Confidence 45677889999999821 11111 12366778888999999999764 2 24533 34555555556655
Q ss_pred HhcCCCCCceE-EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 200 ADAIPSWDNVV-IAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 200 l~~i~~~~~ii-IAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
++.-++.-.++ +-.+|-=.++.-..++.+...++.+.++++|.+.
T Consensus 218 ~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~ 263 (430)
T PRK08208 218 LVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEA 263 (430)
T ss_pred HhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHc
Confidence 54322211111 1122322222222356677788999999998764
No 90
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=32.08 E-value=1.1e+02 Score=29.76 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=35.0
Q ss_pred CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHH----HHHHHCCCeEEEEeCCcHH
Q 024925 128 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKA----AYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv----~~Al~~gL~pIlCIGE~le 181 (260)
-.++|+|+|++++=+|-+.|= ||.+-+.+-+ .+|.++ .++|+|=|=...
T Consensus 92 yE~~Lks~GitV~RigG~nR~----ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 92 YENALKSLGITVKRIGGANRY----ETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHHHhCCcEEEEecCcchH----HHHHHHHHHHHhhchhhhcC-eEEEEEeccccH
Confidence 358999999999999988883 5555443333 345554 789999997654
No 91
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=31.82 E-value=3.5e+02 Score=26.16 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHCCCeE---EEEeCCcHHHHhcCChHHHHHHHHHHHHh
Q 024925 163 AYALSEGLGV---IACIGEQLQEREAGKTFDVCFQQLKAYAD 201 (260)
Q Consensus 163 ~~Al~~gL~p---IlCIGE~leere~g~~~~vl~~Ql~~~l~ 201 (260)
+.|++.|... .+++-|..-.++.+.+.+...+++..++.
T Consensus 128 e~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~ 169 (347)
T PLN02746 128 EAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVAL 169 (347)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5566766653 33444555555566676666665554444
No 92
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.79 E-value=1.5e+02 Score=27.31 Aligned_cols=34 Identities=3% Similarity=0.180 Sum_probs=27.1
Q ss_pred CceEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHH
Q 024925 207 DNVVIAYEPVW---------------AIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 207 ~~iiIAYEPvW---------------AIGTG~~aspe~iqe~~~~IR~~ 240 (260)
.+.+|.|.|.| .+.+|..++|.++.++.+.||+.
T Consensus 179 ~~~~v~~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 227 (286)
T cd01019 179 TKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEK 227 (286)
T ss_pred CCeEEEecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHc
Confidence 45678899988 24467889999999999999863
No 93
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=31.43 E-value=2.6e+02 Score=26.15 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=49.1
Q ss_pred cceEEee----cccccCHHHHHHHHHHHhhccccCCceEEEcCC-cccHHHHHHHcC---C---CceEeeeccccCCCcc
Q 024925 54 KFFVGGN----WKCNGTKESITKLVSDLNDAKLEADVDVVVAPP-FVYIDQVKNSLT---D---RIEIAAQNSWVGKGGA 122 (260)
Q Consensus 54 k~~IigN----WKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp-~~~L~~v~~~~~---~---~i~vgAQnv~~~~~GA 122 (260)
..+|++- |-.++ .+++.+-++...+ .+.|.+..|- ......+.+... . ++.+- +.. |
T Consensus 152 ~~~IiARTDa~~~~~~-~~eAi~Ra~ay~e----AGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~---~~~---~- 219 (285)
T TIGR02320 152 DFMIIARVESLILGKG-MEDALKRAEAYAE----AGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV---IVP---T- 219 (285)
T ss_pred CeEEEEecccccccCC-HHHHHHHHHHHHH----cCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE---Eec---C-
Confidence 3566676 54333 5666555554443 3567666662 354555444322 1 23332 111 2
Q ss_pred cccccCHHHHHhcCCCEEEeeecccccc
Q 024925 123 FTGEISVEQLKDIGCKWVVLGHSERRHV 150 (260)
Q Consensus 123 ~TGEISa~mLkd~G~~~viIGHSERR~~ 150 (260)
=+|..|.+.|+++|++.|+.|++=-|..
T Consensus 220 ~~~~~~~~eL~~lG~~~v~~~~~~~~aa 247 (285)
T TIGR02320 220 SYYTTPTDEFRDAGISVVIYANHLLRAA 247 (285)
T ss_pred CCCCCCHHHHHHcCCCEEEEhHHHHHHH
Confidence 1467799999999999999987665543
No 94
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=31.30 E-value=3.6e+02 Score=25.46 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=60.5
Q ss_pred ccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHh
Q 024925 122 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD 201 (260)
Q Consensus 122 A~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~ 201 (260)
..|-|+ ++.|++.|.+.+++=|-+.-. |..+...+-++++.+.|+.... --++ -+.-+.+.+.+.+-.+.+..
T Consensus 190 rit~el-~~~L~~~~~~~~~~~h~dh~~---Ei~d~~~~ai~~L~~~Gi~v~~--qtvl-lkgiNDn~~~l~~L~~~l~~ 262 (321)
T TIGR03821 190 RITSGL-CDLLANSRLQTVLVVHINHAN---EIDAEVADALAKLRNAGITLLN--QSVL-LRGVNDNADTLAALSERLFD 262 (321)
T ss_pred HhhHHH-HHHHHhcCCcEEEEeeCCChH---hCcHHHHHHHHHHHHcCCEEEe--ccee-eCCCCCCHHHHHHHHHHHHH
Confidence 455433 357889998888754544332 4445577788999999986532 2222 12222334444333333222
Q ss_pred cCCCCCceE-EEEcccccccCC-CCCCHHHHHHHHHHHHHHHHhh
Q 024925 202 AIPSWDNVV-IAYEPVWAIGTG-KVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 202 ~i~~~~~ii-IAYEPvWAIGTG-~~aspe~iqe~~~~IR~~l~~~ 244 (260)
+. ....+ .-+.|+- |+. ...++++..++.+.+|+.+...
T Consensus 263 -~g-v~pyyl~~~~p~g--g~~~f~v~~~~~~~i~~~l~~~~sG~ 303 (321)
T TIGR03821 263 -AG-VLPYYLHLLDKVQ--GAAHFDVDDERARALMAELLARLPGY 303 (321)
T ss_pred -cC-CeeCcccccCCCC--CcccccCCHHHHHHHHHHHHHhCCCC
Confidence 11 11111 2233433 322 3578899999998888877543
No 95
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.88 E-value=1.7e+02 Score=26.50 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCC-----hHHHHHHHHHHHHhcCCCCCceEEEEcccc------------
Q 024925 155 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGK-----TFDVCFQQLKAYADAIPSWDNVVIAYEPVW------------ 217 (260)
Q Consensus 155 d~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~-----~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvW------------ 217 (260)
|.....++..++...|.-+- -+..+.++++- ..+.+.++++..++.++ .+.+|+|+|.|
T Consensus 117 dp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~--~~~~v~~H~af~Y~~~~ygl~~~ 192 (266)
T cd01018 117 SPANAKIMAENIYEALAELD--PQNATYYQANLDALLAELDALDSEIRTILSKLK--QRAFMVYHPAWGYFARDYGLTQI 192 (266)
T ss_pred CHHHHHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEECchhHHHHHHcCCEEE
Confidence 44455566666655554332 23333333221 12233444444444432 35578999988
Q ss_pred cc-cCCCCCCHHHHHHHHHHHHHH
Q 024925 218 AI-GTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 218 AI-GTG~~aspe~iqe~~~~IR~~ 240 (260)
.+ +.|..+++.++.++.+.||+.
T Consensus 193 ~~~~~~~eps~~~l~~l~~~ik~~ 216 (266)
T cd01018 193 PIEEEGKEPSPADLKRLIDLAKEK 216 (266)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHc
Confidence 22 467789999999999999874
No 96
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=30.87 E-value=2.1e+02 Score=24.04 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=22.7
Q ss_pred EEEEcccccccCCCC--CCHHHHHHHHHHHHHHHHh
Q 024925 210 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKN 243 (260)
Q Consensus 210 iIAYEPvWAIGTG~~--aspe~iqe~~~~IR~~l~~ 243 (260)
.||+ | +||||.- +..+-++.+.+.+|+++.+
T Consensus 108 sIa~-P--~igtG~~g~p~~~~a~~~~~ai~~fl~~ 140 (165)
T cd02908 108 SIAF-P--AISTGVYGYPLDEAARIALKTVREFLEE 140 (165)
T ss_pred EEEE-C--ceecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3566 8 8888863 4455557788999999976
No 97
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=30.86 E-value=3.2e+02 Score=22.89 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHC--CCeEEEEeCCcHHHHh---cC--ChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCC
Q 024925 154 DDQFIGKKAAYALSE--GLGVIACIGEQLQERE---AG--KTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVAT 226 (260)
Q Consensus 154 td~~I~~Kv~~Al~~--gL~pIlCIGE~leere---~g--~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~as 226 (260)
..+.....++.+.+. |++++++||....... .. ...+.+.+++..++..- ..+-|-|-+|.+-..+. .+
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~-~~DGidiD~E~~~~~~~---~~ 122 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY-GFDGVDIDWEYPGAADN---SD 122 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc-CCCceEEeeeCCCCcCc---cH
Confidence 334455666666666 9999999996432111 11 11223444444444321 45667788998654333 23
Q ss_pred HHHHHHHHHHHHHHHH
Q 024925 227 PEQAQEVHAALRDWLK 242 (260)
Q Consensus 227 pe~iqe~~~~IR~~l~ 242 (260)
.+......+.+|+.+.
T Consensus 123 ~~~~~~ll~~lr~~l~ 138 (210)
T cd00598 123 RENFITLLRELRSALG 138 (210)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4444555555555553
No 98
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=30.76 E-value=1.8e+02 Score=26.54 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=52.7
Q ss_pred CcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 93 PFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 93 p~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
.+-+|..+.+.. ++.|-..|.- |=+.-....+++|++.+++.-+-.+ ++.+..=++.|.+.||.+
T Consensus 99 ~~~~l~~v~~~v--~iPvl~kdfi-------~~~~qi~~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~ 163 (260)
T PRK00278 99 SLEYLRAARAAV--SLPVLRKDFI-------IDPYQIYEARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDV 163 (260)
T ss_pred CHHHHHHHHHhc--CCCEEeeeec-------CCHHHHHHHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeE
Confidence 455667776654 3555545522 2233477889999999999988754 245666678999999999
Q ss_pred EEEeCCcHH
Q 024925 173 IACIGEQLQ 181 (260)
Q Consensus 173 IlCIGE~le 181 (260)
++|+-+..|
T Consensus 164 lvevh~~~E 172 (260)
T PRK00278 164 LVEVHDEEE 172 (260)
T ss_pred EEEeCCHHH
Confidence 999987765
No 99
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.05 E-value=4.4e+02 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
.+.+++.|++++|+=- .-+.|.++.+ +.+.++||.+|+=|--+.
T Consensus 112 ~~~~~~aGvdgviipD----LP~ee~~~~~----~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 112 IKKISQAGVKGLIIPD----LPYEESDYLI----SVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHcCCeEEEecC----CCHHHHHHHH----HHHHHcCCCEEEEECCCC
Confidence 5678899999998722 1234444444 778899999988877654
No 100
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.00 E-value=3.9e+02 Score=23.84 Aligned_cols=69 Identities=10% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCc
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN 208 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~ 208 (260)
.+.+.++|++++.+ |.|-- ..+.+=++...++|+++-+-+.-... .+.+..+++.++. =
T Consensus 74 i~~~~~~gad~i~~-H~Ea~-------~~~~~~l~~ik~~g~k~GlalnP~Tp-----------~~~i~~~l~~~D~--v 132 (220)
T PRK08883 74 IPDFAKAGASMITF-HVEAS-------EHVDRTLQLIKEHGCQAGVVLNPATP-----------LHHLEYIMDKVDL--I 132 (220)
T ss_pred HHHHHHhCCCEEEE-cccCc-------ccHHHHHHHHHHcCCcEEEEeCCCCC-----------HHHHHHHHHhCCe--E
Confidence 37889999997655 77742 22445557788899998887764321 2234555555431 2
Q ss_pred eEEEEccccc
Q 024925 209 VVIAYEPVWA 218 (260)
Q Consensus 209 iiIAYEPvWA 218 (260)
++..-+|-+.
T Consensus 133 lvMtV~PGfg 142 (220)
T PRK08883 133 LLMSVNPGFG 142 (220)
T ss_pred EEEEecCCCC
Confidence 4567888554
No 101
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.91 E-value=2.7e+02 Score=24.94 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=5.9
Q ss_pred HHHhcCCCEEEe
Q 024925 131 QLKDIGCKWVVL 142 (260)
Q Consensus 131 mLkd~G~~~viI 142 (260)
+.+++||+++.+
T Consensus 102 ~a~~lG~~~v~~ 113 (279)
T TIGR00542 102 LARDLGIRTIQL 113 (279)
T ss_pred HHHHhCCCEEEe
Confidence 344555555544
No 102
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.78 E-value=2.7e+02 Score=26.09 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=64.2
Q ss_pred EeecccccCHHHHHHHHHHHhhcc--------------cc--CCceEEEcCCcccHHHHHHHc-CCCceEeeeccccCCC
Q 024925 58 GGNWKCNGTKESITKLVSDLNDAK--------------LE--ADVDVVVAPPFVYIDQVKNSL-TDRIEIAAQNSWVGKG 120 (260)
Q Consensus 58 igNWKmn~t~~~~~~l~~~l~~~~--------------~~--~~v~VvvaPp~~~L~~v~~~~-~~~i~vgAQnv~~~~~ 120 (260)
+-||..-.+.+++.+.+..+.+.. .+ +.+=+=+.||...+....+.. ...-.| .-.
T Consensus 108 gd~~~~V~d~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Ii-------a~~ 180 (257)
T COG2099 108 GDNWIEVADIEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARII-------AMR 180 (257)
T ss_pred CCceEEecCHHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEE-------Eec
Confidence 389999999999988888663210 00 011122334333333222111 011112 245
Q ss_pred cccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEE
Q 024925 121 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA 174 (260)
Q Consensus 121 GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIl 174 (260)
|+|+=|--..+|.+.+|++++-=-| |++-- -..|+..|.+.|+.+|+
T Consensus 181 GPfs~~~n~all~q~~id~vItK~S------G~~Gg-~~~Ki~aA~eLgi~VI~ 227 (257)
T COG2099 181 GPFSEEDNKALLEQYRIDVVVTKNS------GGAGG-TYEKIEAARELGIPVIM 227 (257)
T ss_pred CCcChHHHHHHHHHhCCCEEEEccC------CcccC-cHHHHHHHHHcCCcEEE
Confidence 9999999999999999999997444 33211 35689999999999887
No 103
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=29.75 E-value=40 Score=31.96 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=22.8
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 024925 210 VIAYEPVWAIGTGKVATPEQAQEVHAALRD 239 (260)
Q Consensus 210 iIAYEPvWAIGTG~~aspe~iqe~~~~IR~ 239 (260)
+=||||.|---.- -.+||++.++|..+|.
T Consensus 263 iGaYePrWfmK~~-HInPeEav~Ihkdv~a 291 (343)
T KOG3798|consen 263 IGAYEPRWFMKSQ-HINPEEAVEIHKDVRA 291 (343)
T ss_pred ccccCchhhcccc-cCCHHHHHHHHHHHhh
Confidence 3499999976543 3689999999998875
No 104
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.52 E-value=2e+02 Score=25.44 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=5.4
Q ss_pred CHHHHHHHHHH
Q 024925 66 TKESITKLVSD 76 (260)
Q Consensus 66 t~~~~~~l~~~ 76 (260)
+.++..+.+++
T Consensus 17 ~~~e~~~~~~~ 27 (284)
T PRK13210 17 SWEERLVFAKE 27 (284)
T ss_pred CHHHHHHHHHH
Confidence 44555554444
No 105
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.38 E-value=5.5e+02 Score=25.15 Aligned_cols=107 Identities=20% Similarity=0.342 Sum_probs=62.5
Q ss_pred HHHHHhcCCCEEEee----eccccccc--CCCHHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCChHHHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLG----HSERRHVI--GEDDQFIGKKAAYALSEGLGVI-AC--IGEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 129 a~mLkd~G~~~viIG----HSERR~~f--~Etd~~I~~Kv~~Al~~gL~pI-lC--IGE~leere~g~~~~vl~~Ql~~~ 199 (260)
.+.|+++|++.+-|| +.|-.+.+ .-+-+.+.+-++.+.+.|+..| ++ .|=+ |.|.+.+.+-++.+
T Consensus 154 l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~tl~~~ 227 (455)
T TIGR00538 154 IDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLP------KQTKESFAKTLEKV 227 (455)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC------CCCHHHHHHHHHHH
Confidence 367788899999998 22211111 1344567777889999998522 22 2422 23455555555554
Q ss_pred HhcCCCCCceE-EEE--ccccc------ccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 200 ADAIPSWDNVV-IAY--EPVWA------IGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 200 l~~i~~~~~ii-IAY--EPvWA------IGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
...-+ +.+. ..| +| |. +|....+++++..++...+.+.+.+.
T Consensus 228 ~~l~~--~~is~y~L~~~p-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~ 278 (455)
T TIGR00538 228 AELNP--DRLAVFNYAHVP-WVKPAQRKIPEAALPSAEEKLDILQETIAFLTEA 278 (455)
T ss_pred HhcCC--CEEEEecCcccc-chhHHHhcccccCCCCHHHHHHHHHHHHHHHHHC
Confidence 44322 2221 122 45 32 34444678999999999999888763
No 106
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.01 E-value=1.7e+02 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCCceEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNVVIAYEPVWA---------------IGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~iiIAYEPvWA---------------IGTG~~aspe~iqe~~~~IR~~ 240 (260)
+.++++..+..++. +.+|+|.|.|- ++.|..++|.++.++.+.||+.
T Consensus 137 l~~~~~~~~~~~~~--~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~ 198 (256)
T PF01297_consen 137 LDAEIKEKLAKLPG--RPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKEN 198 (256)
T ss_dssp HHHHHHHHHTTSSG--GEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccC--CeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhc
Confidence 33444444444432 66788999873 5778899999999999998873
No 107
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=28.65 E-value=2.2e+02 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=21.5
Q ss_pred EEeeecccccccCCCHHHHHHHHHHHHH-CCCeEEEEe
Q 024925 140 VVLGHSERRHVIGEDDQFIGKKAAYALS-EGLGVIACI 176 (260)
Q Consensus 140 viIGHSERR~~f~Etd~~I~~Kv~~Al~-~gL~pIlCI 176 (260)
|+|||+|- ..+..+++..|+ .|+.|++=-
T Consensus 2 VFIvhg~~--------~~~~~~v~~~L~~~~~ep~i~~ 31 (125)
T PF10137_consen 2 VFIVHGRD--------LAAAEAVERFLEKLGLEPIIWH 31 (125)
T ss_pred EEEEeCCC--------HHHHHHHHHHHHhCCCceEEee
Confidence 78999933 246777888888 799998643
No 108
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=27.83 E-value=3e+02 Score=25.67 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=33.1
Q ss_pred HHHHHHC--CC-----eEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCC------CceEEEEcc
Q 024925 162 AAYALSE--GL-----GVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSW------DNVVIAYEP 215 (260)
Q Consensus 162 v~~Al~~--gL-----~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~------~~iiIAYEP 215 (260)
++.|++. |. ...+.+.+..-.+.-+++.+...+++...+....+. ..+.+-|++
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~ 147 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSP 147 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECC
Confidence 4567766 43 334455666666777888888888887766543211 124567777
No 109
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=27.73 E-value=1.7e+02 Score=26.78 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 218 AIGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 218 AIGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
.||++...+|+.+.++.+.+++++.+.
T Consensus 261 ~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 261 QVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred eecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 467777777888888999998888764
No 110
>PLN02783 diacylglycerol O-acyltransferase
Probab=27.63 E-value=3.2e+02 Score=25.84 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHHCC--CeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhc------------CCCCCceEEE-EcccccccCCCCCCH
Q 024925 163 AYALSEG--LGVIACIGEQLQEREAGKTFDVCFQQLKAYADA------------IPSWDNVVIA-YEPVWAIGTGKVATP 227 (260)
Q Consensus 163 ~~Al~~g--L~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~------------i~~~~~iiIA-YEPvWAIGTG~~asp 227 (260)
+.|++.| +.||+|.|++..- ..-.....+..+|...+.. +|...++.+. =||+-.--.. .++.
T Consensus 203 ~lA~~~g~PIVPv~i~G~~~~~-~~~~~~~~~~~~l~r~~~~~p~~~wg~~~~piP~~~~i~vvvG~PI~v~~~~-~~~~ 280 (315)
T PLN02783 203 KIAMETGAPLVPVFCFGQTRAY-KWWKPGGPLVPKLSRAIGFTPIVFWGRYGSPIPHRTPMHVVVGKPIEVKKNP-QPSQ 280 (315)
T ss_pred HHHHHcCCCEEEEEEECchhhh-hhhcCCccHHHHHHHhcCcCceeeecccCcccCCCceEEEEecCCccCCCCC-CCCH
Confidence 5566655 5678899986421 1100000122233333221 2222444433 3554432222 2578
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 024925 228 EQAQEVHAALRDWLKNMSQQ 247 (260)
Q Consensus 228 e~iqe~~~~IR~~l~~~~~~ 247 (260)
|++++.|+.+.+.+.+++.+
T Consensus 281 e~v~~~~~~~~~al~~L~~~ 300 (315)
T PLN02783 281 EEVAEVLEQFVEALQDLFEK 300 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888743
No 111
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.55 E-value=4.5e+02 Score=24.32 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=64.2
Q ss_pred CHHHHHhcCCCEEEee------ecccc--cccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHH
Q 024925 128 SVEQLKDIGCKWVVLG------HSERR--HVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 128 Sa~mLkd~G~~~viIG------HSERR--~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~ 199 (260)
..+..+++|++++-+. |.++. +...|.-+.+..=+++|.+.|+.+.+++...-... -...+.+.+-++.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~--r~~~~~~~~~~~~~ 156 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM--RDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC--cCCHHHHHHHHHHH
Confidence 5788889999998887 77664 33444444556667899999999998886311000 12455666666655
Q ss_pred HhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 200 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 200 l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
.+. . .+.|.|+ =|--.++|+++.+..+.+|+.
T Consensus 157 ~~~-G-~~~i~l~-------DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 157 SDL-P-IKRIMLP-------DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHc-C-CCEEEec-------CCCCCCCHHHHHHHHHHHHhh
Confidence 442 1 1223322 133357899999998888864
No 112
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=27.25 E-value=5e+02 Score=24.39 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=58.1
Q ss_pred HHHHHhcCCCEEEeee-----cccccccC---CCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCChHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGH-----SERRHVIG---EDDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDVCFQQL 196 (260)
Q Consensus 129 a~mLkd~G~~~viIGH-----SERR~~f~---Etd~~I~~Kv~~Al~~gL~p----IlCIGE~leere~g~~~~vl~~Ql 196 (260)
.+.||++|++.+..+. .|.|+.+. -+-+..-+-++.|.+.|+.+ |+=.||+.++|.. +... .++|
T Consensus 144 l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~--~l~~-lr~l 220 (343)
T TIGR03551 144 LKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVD--HLLI-LREI 220 (343)
T ss_pred HHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHH--HHHH-HHHh
Confidence 4568999999886432 23333332 25555667789999999975 4445688776631 1111 1112
Q ss_pred HHHHhcCCCCCce-EEEEcccccccCCC--------CCCHHHHHHHHHHHHHHHH
Q 024925 197 KAYADAIPSWDNV-VIAYEPVWAIGTGK--------VATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 197 ~~~l~~i~~~~~i-iIAYEPvWAIGTG~--------~aspe~iqe~~~~IR~~l~ 242 (260)
+.--.+ ...+ -+-|-|. ||.. .+++++.-.+++..|=.+-
T Consensus 221 ~~~~~~---~~~~iP~~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp 269 (343)
T TIGR03551 221 QEETGG---FTEFVPLPFVHY---NAPLYLKGMARPGPTGREDLKVHAIARILLH 269 (343)
T ss_pred hHHhCC---eeEEEeccccCC---CCccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 211111 1111 1233332 5432 2588898889998887763
No 113
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.12 E-value=1.8e+02 Score=20.84 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
+..|++.|.+..+ -.+.+ .+.+++++|.+.|..-++.||+..
T Consensus 21 ~~~Lr~~g~~v~~-d~~~~---------~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 21 AKKLSDAGIRVEV-DLRNE---------KLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHCCCEEEE-ECCCC---------CHHHHHHHHHHcCCCEEEEECcch
Confidence 4556666664433 22222 389999999999999999999764
No 114
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.66 E-value=5e+02 Score=23.74 Aligned_cols=161 Identities=13% Similarity=0.105 Sum_probs=87.8
Q ss_pred ecccccCHHHHHHHHHHHhhccccCCceEEEcC-------------CcccHHHHHHHcCCCceEeeecc--ccCCCcccc
Q 024925 60 NWKCNGTKESITKLVSDLNDAKLEADVDVVVAP-------------PFVYIDQVKNSLTDRIEIAAQNS--WVGKGGAFT 124 (260)
Q Consensus 60 NWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaP-------------p~~~L~~v~~~~~~~i~vgAQnv--~~~~~GA~T 124 (260)
+|..+.+.++..+++..|.+.-. .-+|+.. | |+-.+..+.+... +..+.+-.- ...+..+|-
T Consensus 13 ~~~~~~~~~~~~~ia~~L~~~Gv-~~iE~G~-~a~~~~~~~~~~~~~~e~i~~~~~~~~-~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 13 LLATRMRTEDMLPIAEALDEAGF-FSLEVWG-GATFDVCMRFLNEDPWERLRELRKAMP-NTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred hhceeccHHHHHHHHHHHHHcCC-CEEEccC-CcchhhhccccCCCHHHHHHHHHHhCC-CCceehhcccccccCccCCC
Confidence 35667777777777777766421 1233332 2 2233444444322 222222111 122233444
Q ss_pred cccCH---HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHh
Q 024925 125 GEISV---EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD 201 (260)
Q Consensus 125 GEISa---~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~ 201 (260)
.++.. ++..+.|++++=|..+-.- -+.+..-++.|.+.|+.+.+|++-+.. ...+.+.+.+.++.+.+
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~~~------~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDALND------VRNLEVAIKAVKKAGKHVEGAICYTGS---PVHTLEYYVKLAKELED 160 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecCCh------HHHHHHHHHHHHHCCCeEEEEEEecCC---CCCCHHHHHHHHHHHHH
Confidence 44443 3567789988766543211 244666779999999999888852211 12355666666665544
Q ss_pred cCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 202 AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 202 ~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
. ..+.|.|+ =|--.++|+++.+..+.+|+.+
T Consensus 161 ~--Ga~~i~l~-------DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 161 M--GADSICIK-------DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred c--CCCEEEEc-------CCCCCCCHHHHHHHHHHHHHhC
Confidence 2 12233343 2233467999999999999864
No 115
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=26.50 E-value=72 Score=32.76 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=40.5
Q ss_pred cccccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHH
Q 024925 121 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYA 200 (260)
Q Consensus 121 GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l 200 (260)
--|-|||-- -|+=...=..++--+|=- .-.|--.+ ++||+.||+||++|.-.. |-..+..+| .+|...++
T Consensus 79 ADFGGEVER-vl~MVDgvlLlVDA~EGp--MPQTrFVl----kKAl~~gL~PIVVvNKiD--rp~Arp~~V-vd~vfDLf 148 (603)
T COG1217 79 ADFGGEVER-VLSMVDGVLLLVDASEGP--MPQTRFVL----KKALALGLKPIVVINKID--RPDARPDEV-VDEVFDLF 148 (603)
T ss_pred CCccchhhh-hhhhcceEEEEEEcccCC--CCchhhhH----HHHHHcCCCcEEEEeCCC--CCCCCHHHH-HHHHHHHH
Confidence 446677632 233333334445555543 22333333 779999999999999773 444444444 44444444
Q ss_pred hcCC
Q 024925 201 DAIP 204 (260)
Q Consensus 201 ~~i~ 204 (260)
..+.
T Consensus 149 ~~L~ 152 (603)
T COG1217 149 VELG 152 (603)
T ss_pred HHhC
Confidence 4443
No 116
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.05 E-value=6.4e+02 Score=24.77 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=65.9
Q ss_pred CHHHHHhcCCCEEEee----eccccccc--CCCHHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCChHHHHHHHHHH
Q 024925 128 SVEQLKDIGCKWVVLG----HSERRHVI--GEDDQFIGKKAAYALSEGLGVI-AC--IGEQLQEREAGKTFDVCFQQLKA 198 (260)
Q Consensus 128 Sa~mLkd~G~~~viIG----HSERR~~f--~Etd~~I~~Kv~~Al~~gL~pI-lC--IGE~leere~g~~~~vl~~Ql~~ 198 (260)
-.+.|+++|++.+-|| +.+-++.+ .-+.+.+.+-++.+.+.|+..| +. .|=+ |.|.+.+.+-++.
T Consensus 154 ~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP------gqt~e~~~~tl~~ 227 (453)
T PRK13347 154 MLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP------HQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC------CCCHHHHHHHHHH
Confidence 4567889999999999 32222221 1355667788899999998632 22 2432 2344455555555
Q ss_pred HHhcCCCCCceE-EEE--cccc------cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 199 YADAIPSWDNVV-IAY--EPVW------AIGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 199 ~l~~i~~~~~ii-IAY--EPvW------AIGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
++..-+ +.+. ..| .| | .||....+++++..++.+.+.+.|.+.
T Consensus 228 ~~~l~p--~~i~~y~l~~~p-~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~ 279 (453)
T PRK13347 228 VIALSP--DRIAVFGYAHVP-SRRKNQRLIDEAALPDAEERLRQARAVADRLLAA 279 (453)
T ss_pred HHhcCC--CEEEEecccccc-chhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHC
Confidence 444322 2221 122 23 3 356666788888889999999998764
No 117
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=25.75 E-value=5.9e+02 Score=24.27 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHHhcCCCEEEeeec----cccccc--CCCHHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCChHHHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGHS----ERRHVI--GEDDQFIGKKAAYALSEGLGVIAC---IGEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 129 a~mLkd~G~~~viIGHS----ERR~~f--~Etd~~I~~Kv~~Al~~gL~pIlC---IGE~leere~g~~~~vl~~Ql~~~ 199 (260)
.+.|+++|++.+-+|=- +..+.+ +-+.+.+.+.++.+.+.|+..|-+ .|=+ |+|.+.+.+-|+.+
T Consensus 106 l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlP------gqt~~~~~~~l~~~ 179 (370)
T PRK06294 106 IRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLP------TQSLSDFIVDLHQA 179 (370)
T ss_pred HHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHHH
Confidence 56677888888888732 222222 235666778889999999975432 4533 34666666667766
Q ss_pred HhcCCCCCce-EEEEccc------ccccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 200 ADAIPSWDNV-VIAYEPV------WAIGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 200 l~~i~~~~~i-iIAYEPv------WAIGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
++.-++.-.+ .+..||- ...|.-..++.+...++.+.+++.|.+.
T Consensus 180 ~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 231 (370)
T PRK06294 180 ITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQ 231 (370)
T ss_pred HccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 6543321111 1334452 1123223467788888999999998764
No 118
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=25.67 E-value=6.4e+02 Score=24.70 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=61.4
Q ss_pred HHHHHhcCCCEEEeee----ccccccc--CCCHHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCChHHHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGH----SERRHVI--GEDDQFIGKKAAYALSEGLGVI-AC--IGEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 129 a~mLkd~G~~~viIGH----SERR~~f--~Etd~~I~~Kv~~Al~~gL~pI-lC--IGE~leere~g~~~~vl~~Ql~~~ 199 (260)
.+.|+++|++.+-+|- .|-.+.+ .-+-+.+.+-++.+.+.|+..| +. +|=+ |.|.+.+.+=++.+
T Consensus 154 l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~~l~~~ 227 (453)
T PRK09249 154 LDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP------KQTPESFARTLEKV 227 (453)
T ss_pred HHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC------CCCHHHHHHHHHHH
Confidence 4578899999999992 1111111 2355567777889999999432 22 2322 22444444445544
Q ss_pred HhcCCCCCceEE-EE--cccc-----cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 024925 200 ADAIPSWDNVVI-AY--EPVW-----AIGTGKVATPEQAQEVHAALRDWLKNM 244 (260)
Q Consensus 200 l~~i~~~~~iiI-AY--EPvW-----AIGTG~~aspe~iqe~~~~IR~~l~~~ 244 (260)
++.-+ +.+.+ .| .|-+ .|+....++.++..++...+.+.+.+.
T Consensus 228 ~~l~~--~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 278 (453)
T PRK09249 228 LELRP--DRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEA 278 (453)
T ss_pred HhcCC--CEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHC
Confidence 43222 22211 12 2422 233444678889899999999988764
No 119
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.63 E-value=31 Score=28.39 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.0
Q ss_pred CCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 024925 136 GCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 177 (260)
Q Consensus 136 G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIG 177 (260)
.++..+.|-||++..-+| ...-+-+..+...|.+|..|..
T Consensus 36 dVelifFGpse~~la~~~--~~~l~~l~~~~s~g~~p~AC~~ 75 (113)
T COG3370 36 DVELIFFGPSEKLLAKND--GDSLKMLQELRSLGIKPLACKV 75 (113)
T ss_pred ceEEEEECchHHHHHhcc--hHHHHHHHHHHHcCCcchHHHH
Confidence 478899999999865444 4445667889999999999987
No 120
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=25.58 E-value=2.1e+02 Score=25.98 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCceEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNVVIAYEPVWA---------------IGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~iiIAYEPvWA---------------IGTG~~aspe~iqe~~~~IR~~ 240 (260)
+.++++..+..++ .+-+|+|+|.|- +.+|..+++.++.++.+.||+.
T Consensus 158 l~~~~~~~~~~~~--~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 219 (282)
T cd01017 158 LDQEYRAKLAKAK--GKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKS 219 (282)
T ss_pred HHHHHHHHHhccC--CCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHc
Confidence 3444444444332 345788998774 3468889999999999998873
No 121
>PRK12412 pyridoxal kinase; Reviewed
Probab=25.45 E-value=1.3e+02 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 024925 188 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRD 239 (260)
Q Consensus 188 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~ 239 (260)
..+.+.+|++.+++++ |+=+|=+|...+++.++.+.+.+++
T Consensus 56 ~~~~i~~q~~~l~~d~-----------~~~~ikiG~l~~~~~v~~i~~~~~~ 96 (268)
T PRK12412 56 PASTLKPQLETTIEGV-----------GVDALKTGMLGSVEIIEMVAETIEK 96 (268)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 5677888888888764 4455667777778887777777765
No 122
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.99 E-value=87 Score=28.93 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhc
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA 202 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~ 202 (260)
.+.+|++|.++|.|.----.. +++.-..=++.+.+.||+++-=+|-...+.+...+.+.+.+|++.-|+.
T Consensus 90 l~~~k~lGf~~IEiSdGti~l----~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 90 LEECKELGFDAIEISDGTIDL----PEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp HHHHHHCT-SEEEE--SSS-------HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCceeC----CHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHC
Confidence 367899999999885432211 1122222348899999999999998877777666677888888776653
No 123
>PRK10799 metal-binding protein; Provisional
Probab=24.85 E-value=44 Score=30.26 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHH
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKA 198 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~ 198 (260)
...++.||+..|-|---. .+ +..|.+.|+. ++.+|=...|+- ..+.+.+.|+.
T Consensus 180 ~~a~~~gaD~~ITGd~k~------h~------~~~A~~~gl~-li~~GH~~sE~~---~~~~la~~L~~ 232 (247)
T PRK10799 180 DSAARFGVDAFITGEVSE------QT------IHSAREQGLH-FYAAGHHATERG---GIRALSEWLNE 232 (247)
T ss_pred HHHHHcCCCEEEECCcch------HH------HHHHHHCCCe-EEEcCchHHHHH---HHHHHHHHHHH
Confidence 344556888777774321 11 2557777877 556776555542 23344444544
No 124
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.82 E-value=2.3e+02 Score=25.82 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHH
Q 024925 192 CFQQLKAYADAIPSWDNVVIAYEPVW---------------AIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 192 l~~Ql~~~l~~i~~~~~iiIAYEPvW---------------AIGTG~~aspe~iqe~~~~IR~~ 240 (260)
+.++++..++.++.-.+.++.|.|.| .+..|..++|.++.++.+.||+.
T Consensus 146 l~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 209 (276)
T cd01016 146 LDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVER 209 (276)
T ss_pred HHHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHc
Confidence 34444444444443345678887744 34568889999999999999875
No 125
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=24.76 E-value=6.1e+02 Score=24.47 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=88.3
Q ss_pred CcceEEeecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCccccccc----
Q 024925 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEI---- 127 (260)
Q Consensus 53 rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEI---- 127 (260)
+++++++| .-.+.+++.+.++...+. -. --++|.||+..+........ .++.| ..|....|+||..-
T Consensus 197 ~~~~y~~n--it~~~~e~i~~a~~a~~~--Ga-d~vmv~~~~~g~~~~~~l~~~~~lpi---~~H~a~~ga~~~~~~~g~ 268 (367)
T cd08205 197 RKTLYAPN--ITGDPDELRRRADRAVEA--GA-NALLINPNLVGLDALRALAEDPDLPI---MAHPAFAGALSRSPDYGS 268 (367)
T ss_pred CcceEEEE--cCCCHHHHHHHHHHHHHc--CC-CEEEEecccccccHHHHHHhcCCCeE---EEccCcccccccCCCCcC
Confidence 56788888 444457777777765542 11 24788888877655433222 22222 33666778888421
Q ss_pred ----CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHC--CCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHh
Q 024925 128 ----SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSE--GLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD 201 (260)
Q Consensus 128 ----Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~--gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~ 201 (260)
=....+-.|++.++.|..-- -|.++++.+.+=.+.++.. ++++.+=+- ..|.+. .++..+++
T Consensus 269 ~~~~~~kl~RlaGad~~~~~~~~g--k~~~~~~~~~~la~~~~~~~~~iK~~~Pv~------sgG~~~----~~v~~l~~ 336 (367)
T cd08205 269 HFLLLGKLMRLAGADAVIFPGPGG--RFPFSREECLAIARACRRPLGGIKPALPVP------SGGMHP----GRVPELYR 336 (367)
T ss_pred CHHHHHHHHHHcCCCccccCCCcc--CcCCCHHHHHHHHHHHhCccccCCCceeec------cCCCCH----HHHHHHHH
Confidence 12367789999999999865 4677777664422323322 223221100 112222 22334444
Q ss_pred cCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 024925 202 AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRD 239 (260)
Q Consensus 202 ~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~ 239 (260)
.+. .++++ .+|+|.-.-|+-++.-.+.+|+
T Consensus 337 ~~G--~dv~~------~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 337 DYG--PDVIL------LAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred HhC--CcEEE------EcCchhcCCCCChHHHHHHHhc
Confidence 332 23444 6788887777777766666664
No 126
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.48 E-value=2e+02 Score=22.68 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
+..|++.|++--+ -.. + .+.+++++|.+.|..-++.||+..
T Consensus 48 a~~LR~~gi~v~~-d~~-~---------sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 48 SEELRELGFSVKY-DDS-G---------SIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHCCCEEEE-eCC-C---------CHHHHHHHhHhcCCCEEEEECcCc
Confidence 5678888875443 233 3 389999999999999999999874
No 127
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=24.33 E-value=1e+02 Score=26.28 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=35.7
Q ss_pred EcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHHHHhcCCCEEEeeec
Q 024925 90 VAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHS 145 (260)
Q Consensus 90 vaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHS 145 (260)
+.++..+...+.+. .|+.|+.....+...+++|.|.|.+.+.+++++.+.
T Consensus 154 ~~~~~~~~~~~~~~------~G~~n~~~~~~~~~~~~vs~E~l~~~npD~I~v~~~ 203 (238)
T PF01497_consen 154 VAGSGSYFGDLLEL------AGGKNVAAEAGGGGYIPVSLEQLLALNPDVIFVSDR 203 (238)
T ss_dssp EECTTSHHHHHHHH------TTEEESHHHHHSSSEEEEEHHHHHHHS-SEEEEEEC
T ss_pred cccCCcchhhHHHh------hhccCcccccccccccccCHHHHHHhCCCEEEEECC
Confidence 33344444555443 478888433338899999999999999999999988
No 128
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.95 E-value=1.9e+02 Score=23.96 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=32.5
Q ss_pred HHHHHhcCCCEEEe--e-ec-----------ccccccCCCHHHHHHHHHHHHHCCCeEEEEe
Q 024925 129 VEQLKDIGCKWVVL--G-HS-----------ERRHVIGEDDQFIGKKAAYALSEGLGVIACI 176 (260)
Q Consensus 129 a~mLkd~G~~~viI--G-HS-----------ERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCI 176 (260)
+++||++|++.+++ | |- +.. .+ ....+..-++.|-+.||.+++=+
T Consensus 6 ~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp-~L--~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 6 VDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP-GL--KRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC-CC--CcCHHHHHHHHHHHCCCEEEEEE
Confidence 57899999999998 3 32 221 12 24678888999999999998633
No 129
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.64 E-value=5.8e+02 Score=23.73 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHhcCCCEEEe-eec-ccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHH---------HhcCC-------------
Q 024925 132 LKDIGCKWVVL-GHS-ERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQE---------REAGK------------- 187 (260)
Q Consensus 132 Lkd~G~~~viI-GHS-ERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~lee---------re~g~------------- 187 (260)
|.+.||+.+++ |++ |-=.+=.|--..+.+.+..+.+..+.+|+++|....+ .+.|-
T Consensus 38 li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~ 117 (309)
T cd00952 38 LIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPL 117 (309)
T ss_pred HHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCC
Confidence 45678888765 442 2111111111123344444456668888888853221 12221
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHH
Q 024925 188 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVH 234 (260)
Q Consensus 188 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~ 234 (260)
+.+.+.+-.+.+.+..++ -. ++.|--++..|. ..+++.+.+..
T Consensus 118 ~~~~l~~yf~~va~a~~~-lP-v~iYn~P~~tg~--~l~~~~l~~L~ 160 (309)
T cd00952 118 DVDTAVQFYRDVAEAVPE-MA-IAIYANPEAFKF--DFPRAAWAELA 160 (309)
T ss_pred CHHHHHHHHHHHHHhCCC-Cc-EEEEcCchhcCC--CCCHHHHHHHh
Confidence 344555555665554321 13 456977776665 45577766554
No 130
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.31 E-value=1.4e+02 Score=28.80 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEeeecccccccCC-----CHHHHHHHHHHHHHCCCeE----EEEeCCcHHHH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGE-----DDQFIGKKAAYALSEGLGV----IACIGEQLQER 183 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~E-----td~~I~~Kv~~Al~~gL~p----IlCIGE~leer 183 (260)
++.|+|+|+++.-.++=-.|.+|.. |-+..-.-++++.++||.+ |+=+||+.++|
T Consensus 147 ~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDr 210 (335)
T COG0502 147 AEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDR 210 (335)
T ss_pred HHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHH
No 131
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=23.25 E-value=82 Score=29.44 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=25.0
Q ss_pred cccccCHHHHH---hcCCCEEEeeecccc-cccCCCHHHHHHHHHHHHHCC
Q 024925 123 FTGEISVEQLK---DIGCKWVVLGHSERR-HVIGEDDQFIGKKAAYALSEG 169 (260)
Q Consensus 123 ~TGEISa~mLk---d~G~~~viIGHSERR-~~f~Etd~~I~~Kv~~Al~~g 169 (260)
||||.|-..+- ..|++-.+.+||.-. -++++ +..|++.-++..
T Consensus 211 ~TGEmSHH~vL~~~~~g~sVilc~HSNtERgfL~d----~~~kl~~~l~~~ 257 (272)
T KOG4131|consen 211 ITGEMSHHDVLDAAANGISVILCEHSNTERGFLSD----LCDKLASSLEEE 257 (272)
T ss_pred EeccccHHHHHHHHHcCCeEEEecCCCccchhHHH----HHHHHHhhCCcc
Confidence 89998876653 346666677776542 23333 555555555443
No 132
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.24 E-value=5.8e+02 Score=23.75 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhccccCCceEEEcCCcccHHHHH---HHcC----CCceEeeeccccCCCcccccccCHHHHHhcCCCEEE
Q 024925 69 SITKLVSDLNDAKLEADVDVVVAPPFVYIDQVK---NSLT----DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVV 141 (260)
Q Consensus 69 ~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~---~~~~----~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~vi 141 (260)
...++++.+.+.....+..+++++....-.... +.+. +.+-+. |...-+--.++|.+.|+.+|+
T Consensus 72 ~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~---------~~~~~~~~~~~l~~~~~P~V~ 142 (333)
T COG1609 72 FFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILL---------GERPNDSLLELLAAAGIPVVV 142 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEe---------cCCCCHHHHHHHHhcCCCEEE
Confidence 445555555554445678889988776323221 1111 222222 122334457789999999999
Q ss_pred eeeccc--cc-cc-CCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 142 LGHSER--RH-VI-GEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 142 IGHSER--R~-~f-~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
+|.... .. .. .++..-...=++..++.|-..|.++|-..
T Consensus 143 i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~ 185 (333)
T COG1609 143 IDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPL 185 (333)
T ss_pred EeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 998544 11 12 33333444556888999999999998764
No 133
>PRK10878 hypothetical protein; Provisional
Probab=23.09 E-value=81 Score=23.75 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 216 VWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 216 vWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
-|..|.+.+++|+. +++++.||+.-
T Consensus 40 ~W~~g~~~p~d~~l-~~iV~~Ir~~~ 64 (72)
T PRK10878 40 NWLMNHGKPADAEL-ERMVRLIQTRN 64 (72)
T ss_pred HHHhCCCCCCCHHH-HHHHHHHHHhc
Confidence 49999999988876 67999999854
No 134
>PRK06256 biotin synthase; Validated
Probab=23.09 E-value=6.1e+02 Score=23.49 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=55.0
Q ss_pred HHHHHhcCCCEEEeee--ccc-cc-cc-CCCHHHHHHHHHHHHHCCCeEEEE----eCCcHHHHhcCChHHHHHHHHHHH
Q 024925 129 VEQLKDIGCKWVVLGH--SER-RH-VI-GEDDQFIGKKAAYALSEGLGVIAC----IGEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 129 a~mLkd~G~~~viIGH--SER-R~-~f-~Etd~~I~~Kv~~Al~~gL~pIlC----IGE~leere~g~~~~vl~~Ql~~~ 199 (260)
.+.|+++|++.+.+|- +++ .. +. +.+-+..-+-++.+.+.|+.+..+ .||+.+++.. -+. .
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~---------~~~-~ 224 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVE---------HAF-F 224 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHH---------HHH-H
Confidence 5567799999987752 221 11 11 235556667778899999864221 4777766531 111 2
Q ss_pred HhcCCCCCceEE-EEcccccccC----CCCCCHHHHHHHHHHHHHHHH
Q 024925 200 ADAIPSWDNVVI-AYEPVWAIGT----GKVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 200 l~~i~~~~~iiI-AYEPvWAIGT----G~~aspe~iqe~~~~IR~~l~ 242 (260)
+..+. .+.+.+ -+=|. =|| -..++++++..+++..|-.+-
T Consensus 225 l~~l~-~~~v~i~~l~P~--pGT~l~~~~~~~~~e~l~~ia~~Rl~~p 269 (336)
T PRK06256 225 LKELD-ADSIPINFLNPI--PGTPLENHPELTPLECLKTIAIFRLINP 269 (336)
T ss_pred HHhCC-CCEEeecccccC--CCCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 22222 111111 12221 133 234788888888888887663
No 135
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.23 E-value=6.8e+02 Score=23.77 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=90.4
Q ss_pred ccccCHHHHHHHHHHHhhccccCCceEE---------------EcCCcccHHHHHHHcCCCceEeeeccccCCCcccccc
Q 024925 62 KCNGTKESITKLVSDLNDAKLEADVDVV---------------VAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGE 126 (260)
Q Consensus 62 Kmn~t~~~~~~l~~~l~~~~~~~~v~Vv---------------vaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGE 126 (260)
+.+.+.++..++++.|.+.-. .-+|+. ..|+.-++..+.+..+ +..+++= -.+|-.|=
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV-~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~l----l~pg~~~~- 90 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGV-DAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVL----LLPGIGTV- 90 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCC-CEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEE----eccCccCH-
Confidence 345677888888888876421 123332 2244455555554433 2222211 12222221
Q ss_pred cCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 024925 127 ISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSW 206 (260)
Q Consensus 127 ISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~ 206 (260)
-..++..+.|++.+=|.= ...|.+ .+.+=++.|.+.|+.+.+++-... ..+.+.+.++++.+.+. . .
T Consensus 91 ~dl~~a~~~gvd~iri~~-----~~~e~d-~~~~~i~~ak~~G~~v~~~l~~s~-----~~~~e~l~~~a~~~~~~-G-a 157 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVAT-----HCTEAD-VSEQHIGMARELGMDTVGFLMMSH-----MTPPEKLAEQAKLMESY-G-A 157 (333)
T ss_pred HHHHHHHHCCCCEEEEEe-----ccchHH-HHHHHHHHHHHcCCeEEEEEEccc-----CCCHHHHHHHHHHHHhc-C-C
Confidence 136788889999876652 123333 466778999999999888875442 34677888888775542 1 1
Q ss_pred CceEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 207 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 207 ~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
..|+|+ =|.-.++|+++.+....+|+.+
T Consensus 158 ~~i~i~-------DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 158 DCVYIV-------DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred CEEEEc-------cCCCCCCHHHHHHHHHHHHHhC
Confidence 223332 2334688999999999999865
No 136
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=22.03 E-value=2.8e+02 Score=19.92 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
+..|++.|+... +-.+ ...+.+++++|.+.|..-++=+|+..
T Consensus 24 ~~~Lr~~g~~v~-~~~~---------~~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 24 LNALLANGIRVL-YDDR---------ERKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHCCCEEE-ecCC---------CcCHhHHHHHHHhCCCCEEEEECCCh
Confidence 345666666333 2222 23489999999999998888899753
No 137
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.97 E-value=2.4e+02 Score=23.62 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=27.2
Q ss_pred CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeE
Q 024925 128 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172 (260)
Q Consensus 128 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~p 172 (260)
=++.+++.+.+.||+||+-+- + .+.-.+...|+.++..
T Consensus 83 l~~~i~~~~p~~Vl~g~t~~g---~----~la~rlA~~L~~~~vs 120 (181)
T cd01985 83 LAALIKKEKPDLILAGATSIG---K----QLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHhCCCEEEECCcccc---c----CHHHHHHHHhCCCcce
Confidence 345566679999999999882 2 3666667777777664
No 138
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=21.61 E-value=2.5e+02 Score=27.27 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=24.6
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHH-CCCeEEEEeC
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS-EGLGVIACIG 177 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~-~gL~pIlCIG 177 (260)
+..+.+.|++|+.++..-....+..... ..++...+ .+ .||+.+|
T Consensus 124 ~~~a~~~GaD~I~~~pg~~~~~~~~~~~---~~l~~l~~~~~-iPI~a~G 169 (430)
T PRK07028 124 AVELEELGVDYINVHVGIDQQMLGKDPL---ELLKEVSEEVS-IPIAVAG 169 (430)
T ss_pred HHHHHhcCCCEEEEEeccchhhcCCChH---HHHHHHHhhCC-CcEEEEC
Confidence 4566789999998875332222222211 12333333 23 6788888
No 139
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.61 E-value=5.7e+02 Score=23.71 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC--ChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHH
Q 024925 154 DDQFIGKKAAYALSEGLGVIACIGEQLQEREAG--KTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQ 231 (260)
Q Consensus 154 td~~I~~Kv~~Al~~gL~pIlCIGE~leere~g--~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iq 231 (260)
+...+.+.++.+.+.|+++++-||-........ ...+.+.+.|..++..- ..+-|=|-+|..-.- ..++++..
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~-g~DGiDiD~E~~~~~----~~~~~~~~ 132 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEY-GFDGLDIDLESGSNP----LNATPVIT 132 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCeEEEecccCCcc----CCcHHHHH
Confidence 455677788889999999999998643211111 11233344444444321 345566888874321 12266777
Q ss_pred HHHHHHHHHHHhhcC
Q 024925 232 EVHAALRDWLKNMSQ 246 (260)
Q Consensus 232 e~~~~IR~~l~~~~~ 246 (260)
....+||+. ++.++
T Consensus 133 ~~~~~lk~l-r~~~~ 146 (312)
T cd02871 133 NLISALKQL-KDHYG 146 (312)
T ss_pred HHHHHHHHH-HHHcC
Confidence 777777653 33444
No 140
>PLN02954 phosphoserine phosphatase
Probab=21.32 E-value=1.2e+02 Score=25.85 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=7.5
Q ss_pred CCeEEEEeCCcHH
Q 024925 169 GLGVIACIGEQLQ 181 (260)
Q Consensus 169 gL~pIlCIGE~le 181 (260)
|...+++||.+..
T Consensus 168 ~~~~~i~iGDs~~ 180 (224)
T PLN02954 168 GYKTMVMIGDGAT 180 (224)
T ss_pred CCCceEEEeCCHH
Confidence 4455666666654
No 141
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=21.24 E-value=4.5e+02 Score=23.06 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=48.9
Q ss_pred CCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCC-----CceE
Q 024925 136 GCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSW-----DNVV 210 (260)
Q Consensus 136 G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~-----~~ii 210 (260)
..+++|+++... ...++.+. ++++.+.|+.+++|-|-+.. . +..++..+... .|=-
T Consensus 9 DlDGTLl~~~~~--i~~~~~~a----l~~~~~~g~~v~iaTGR~~~---------~----~~~~~~~l~~~~~~I~~NGa 69 (264)
T COG0561 9 DLDGTLLDSNKT--ISPETKEA----LARLREKGVKVVLATGRPLP---------D----VLSILEELGLDGPLITFNGA 69 (264)
T ss_pred cCCCCccCCCCc--cCHHHHHH----HHHHHHCCCEEEEECCCChH---------H----HHHHHHHcCCCccEEEeCCe
Confidence 456667766554 33333333 46788999999999998863 1 22233222210 1101
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 024925 211 IAYEPVWAIGTGKVATPEQAQEVHAALRDW 240 (260)
Q Consensus 211 IAYEPvWAIGTG~~aspe~iqe~~~~IR~~ 240 (260)
..|.+ +=+=...+.+.+.++++...+++.
T Consensus 70 ~i~~~-~~~i~~~~l~~~~~~~i~~~~~~~ 98 (264)
T COG0561 70 LIYNG-GELLFQKPLSREDVEELLELLEDF 98 (264)
T ss_pred EEecC-CcEEeeecCCHHHHHHHHHHHHhc
Confidence 23444 333334568889988888887554
No 142
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.00 E-value=2.8e+02 Score=22.80 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=45.5
Q ss_pred CCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC------ChHHHHHHHHHHHHhcCCCCCce
Q 024925 136 GCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAG------KTFDVCFQQLKAYADAIPSWDNV 209 (260)
Q Consensus 136 G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g------~~~~vl~~Ql~~~l~~i~~~~~i 209 (260)
.++++|+.+.+..-...+-...+.+.++.+.+.|...|+|-|-....++.+ .++....+.|+. .++| ...+
T Consensus 7 DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k--~~ip-Yd~l 83 (126)
T TIGR01689 7 DLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQ--HNVP-YDEI 83 (126)
T ss_pred eCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHH--cCCC-CceE
Confidence 456677654321111244445566667777799999999999988765522 234455555544 3444 2333
Q ss_pred EEEEccccc
Q 024925 210 VIAYEPVWA 218 (260)
Q Consensus 210 iIAYEPvWA 218 (260)
-.-.+|-
T Consensus 84 --~~~kp~~ 90 (126)
T TIGR01689 84 --YVGKPWC 90 (126)
T ss_pred --EeCCCcC
Confidence 3456676
No 143
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.90 E-value=2.5e+02 Score=20.76 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=32.2
Q ss_pred cccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 024925 123 FTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 177 (260)
Q Consensus 123 ~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIG 177 (260)
..|..-+..|.+.||+.+|.|+ +++.-. ....+.|+.++.-.+
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~------iG~~a~------~~l~~~gI~v~~~~~ 90 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGG------IGGPAA------AKLEAAGIKPIKAAE 90 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcc------cCccHH------HHHHHcCCEEEEcCC
Confidence 4677889999999999999996 444332 336678999986554
No 144
>PRK14072 6-phosphofructokinase; Provisional
Probab=20.88 E-value=2.2e+02 Score=28.14 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=35.7
Q ss_pred HHhcCCCEEEeeecccccc--cCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 024925 132 LKDIGCKWVVLGHSERRHV--IGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 132 Lkd~G~~~viIGHSERR~~--f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~le 181 (260)
|...| .+++|-| |.+. |.++++...+=++...++|+..+++||=+..
T Consensus 67 i~~~g--Gt~Lgss-R~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS 115 (416)
T PRK14072 67 LAHTP--SGALGSC-RYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDS 115 (416)
T ss_pred HhcCC--CeEeccC-CCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHH
Confidence 44444 5599999 6665 5556777777778899999999999997654
No 145
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=20.78 E-value=1.8e+02 Score=27.53 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=59.2
Q ss_pred cccccCHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHh-
Q 024925 123 FTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD- 201 (260)
Q Consensus 123 ~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~- 201 (260)
.|-|. .+.|++.|.+.+++.|-..- .|.++.+.+-++++.++|+...+ --++ -+..+...+.+.+-.+.+.+
T Consensus 208 it~el-~~~L~~~~~~~~~vsh~nh~---~Ei~~~~~~ai~~L~~aGi~v~~--qtvL-l~gvnD~~~~l~~L~~~l~~~ 280 (331)
T TIGR00238 208 ITDEL-CELLASFELQLMLVTHINHC---NEITEEFAEAMKKLRTVNVTLLN--QSVL-LRGVNDRAQILAKLSIALFKV 280 (331)
T ss_pred cCHHH-HHHHHhcCCcEEEEccCCCh---HhCCHHHHHHHHHHHHcCCEEEe--ecce-ECCcCCCHHHHHHHHHHHhhc
Confidence 34443 34788999999999988764 36667788888999999986431 2221 12222333333322222221
Q ss_pred cCCCCCceE-EEEcccccccCC-CCCCHHHHHHHHHHHHHHHHh
Q 024925 202 AIPSWDNVV-IAYEPVWAIGTG-KVATPEQAQEVHAALRDWLKN 243 (260)
Q Consensus 202 ~i~~~~~ii-IAYEPvWAIGTG-~~aspe~iqe~~~~IR~~l~~ 243 (260)
++. ..+ .-+-|+ -|+. -..+.++..++.+.+|..+.-
T Consensus 281 gV~---pyyl~~~~~~--~g~~~f~~~~~~~~~i~~~l~~~~sG 319 (331)
T TIGR00238 281 GII---PYYLHYLDKV--QGAKHFLVPDAEAAQIVKELARLTSG 319 (331)
T ss_pred Cee---cCeecCcCCC--CCcccccCCHHHHHHHHHHHHhcCCC
Confidence 111 111 122332 2222 246777877777777776543
No 146
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.71 E-value=1.6e+02 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 024925 130 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 180 (260)
Q Consensus 130 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~l 180 (260)
..+.+.|++++++-+-++......-+-.+.++++... + .||++.|--.
T Consensus 160 ~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~--~-ipvia~GGi~ 207 (232)
T TIGR03572 160 REAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV--S-IPVIALGGAG 207 (232)
T ss_pred HHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC--C-CCEEEECCCC
Confidence 6778899999999997775544444555556555543 3 5788888553
No 147
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=20.43 E-value=1.4e+02 Score=26.86 Aligned_cols=106 Identities=13% Similarity=0.019 Sum_probs=59.4
Q ss_pred cccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHH-HHcC--CCceEeeeccccCCCcccccccCH--HHHHhcCC
Q 024925 63 CNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVK-NSLT--DRIEIAAQNSWVGKGGAFTGEISV--EQLKDIGC 137 (260)
Q Consensus 63 mn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~-~~~~--~~i~vgAQnv~~~~~GA~TGEISa--~mLkd~G~ 137 (260)
...+.++..+++..+... ..+.+.+|.=....|.... .... .+- .+. ...+.|.++-+... ..|++.|.
T Consensus 61 ~~~~~~~~~d~l~~~~~~--~~~ydtVVIDsI~~l~~~~~~~~~r~~k~---~~~-~~~~yg~~~~~fl~~l~~L~~~g~ 134 (220)
T TIGR01618 61 DMPPIQAMVEFYVMQNIQ--AVKYDNIVIDNISALQNLWLENIGRAAKN---GQP-ELQHYQKLDLWFLDLLTVLKESNK 134 (220)
T ss_pred CCCCHHHHHHHHHHHHhc--cccCCEEEEecHHHHHHHHHHHHhhhcCC---CCc-ccccHHHHHHHHHHHHHHHHhCCC
Confidence 444456666666655432 3456777765555555421 1110 110 011 23455665555542 45778999
Q ss_pred CEEEeeecccccccCCCHH-------HHHHHHHHHHHCCCeEEEE
Q 024925 138 KWVVLGHSERRHVIGEDDQ-------FIGKKAAYALSEGLGVIAC 175 (260)
Q Consensus 138 ~~viIGHSERR~~f~Etd~-------~I~~Kv~~Al~~gL~pIlC 175 (260)
+-++++|..-|....|+.+ .++.|+...+ .|+.-+|+
T Consensus 135 nII~tAhe~~~~~~de~G~~~~r~~P~i~~K~~n~l-~G~~DvV~ 178 (220)
T TIGR01618 135 NIYATAWELTNQSSGESGQIYNRYQPDIREKVLNAF-LGLTDVVG 178 (220)
T ss_pred cEEEEEeeccccccCCCCCCcceechhhhhhHHHhh-cccccEEE
Confidence 9999999976655555444 5677777766 55555543
No 148
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=20.42 E-value=70 Score=29.07 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=34.4
Q ss_pred eecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 024925 143 GHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 181 (260)
Q Consensus 143 GHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~le 181 (260)
-+.+|+....|-...|++++...++.|.+.+++.|.|..
T Consensus 66 ~~~~r~~~~~~eK~~IA~~Aa~lI~~g~~ifld~GTT~~ 104 (253)
T COG1349 66 PFSERKALNTEEKRAIAKAAATLIEDGDTIFLDAGTTTL 104 (253)
T ss_pred cHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEECCCcHHH
Confidence 456787888888889999999999999999999998875
No 149
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.36 E-value=5.1e+02 Score=25.96 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=61.0
Q ss_pred HHHHHhcCCCEEEeee--cccc-------c------------ccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCC
Q 024925 129 VEQLKDIGCKWVVLGH--SERR-------H------------VIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGK 187 (260)
Q Consensus 129 a~mLkd~G~~~viIGH--SERR-------~------------~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~ 187 (260)
-.+++..||+.+|++= |||- + .+-.|+.+- ++.++.|..+|.-.|+..-+-+..
T Consensus 139 i~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~----~Rf~~LGa~~v~v~GNlKfd~~~~- 213 (419)
T COG1519 139 INELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDA----QRFRSLGAKPVVVTGNLKFDIEPP- 213 (419)
T ss_pred HHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHH----HHHHhcCCcceEEecceeecCCCC-
Confidence 4566667999999997 5551 1 123444444 667888888887778664322221
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 188 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 188 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
.....++...-..+. .. .|+|+.++--.=+.|.+-++|+.+++..
T Consensus 214 --~~~~~~~~~~r~~l~------~~-r~v~iaaSTH~GEeei~l~~~~~l~~~~ 258 (419)
T COG1519 214 --PQLAAELAALRRQLG------GH-RPVWVAASTHEGEEEIILDAHQALKKQF 258 (419)
T ss_pred --hhhHHHHHHHHHhcC------CC-CceEEEecCCCchHHHHHHHHHHHHhhC
Confidence 222223332222211 23 7999999877777777889998887754
No 150
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.19 E-value=7.9e+02 Score=23.73 Aligned_cols=158 Identities=16% Similarity=0.053 Sum_probs=86.2
Q ss_pred cccccCHHHHHHHHHHHhhccccCCceEEEcC------CcccHHHHHHHcC--CCceEeeeccccCCCcccc-cccCHHH
Q 024925 61 WKCNGTKESITKLVSDLNDAKLEADVDVVVAP------PFVYIDQVKNSLT--DRIEIAAQNSWVGKGGAFT-GEISVEQ 131 (260)
Q Consensus 61 WKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaP------p~~~L~~v~~~~~--~~i~vgAQnv~~~~~GA~T-GEISa~m 131 (260)
.+...+.++=.++++.|.+.-. ..+|+.-+. ++..-..+.+.+. ....+. +.+ =.--.+.
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~~GV-~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~----------~l~~n~~die~ 129 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVSSGL-PVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFP----------VLTPNLKGFEA 129 (347)
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CEEEECCCcCcccccccccHHHHHHHHHhccCCcee----------EEcCCHHHHHH
Confidence 4555677777888888776422 235555322 2223233333321 111111 111 1123466
Q ss_pred HHhcCCCEEEee------ecccc--cccCCCHHHHHHHHHHHHHCCCeEEEEe----CCcHHHHhcCChHHHHHHHHHHH
Q 024925 132 LKDIGCKWVVLG------HSERR--HVIGEDDQFIGKKAAYALSEGLGVIACI----GEQLQEREAGKTFDVCFQQLKAY 199 (260)
Q Consensus 132 Lkd~G~~~viIG------HSERR--~~f~Etd~~I~~Kv~~Al~~gL~pIlCI----GE~leere~g~~~~vl~~Ql~~~ 199 (260)
..++|++++-+. |.++. .-..|.-+.+.+-+++|.+.|+.+.+++ |-....| ...+.+.+..+.+
T Consensus 130 A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r---~~~~~l~~~~~~~ 206 (347)
T PLN02746 130 AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP---VPPSKVAYVAKEL 206 (347)
T ss_pred HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC---CCHHHHHHHHHHH
Confidence 778899998777 55543 3344555556677899999999986444 3222211 2455666666655
Q ss_pred HhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 024925 200 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 241 (260)
Q Consensus 200 l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l 241 (260)
.+. ..+.|.|+= |--.++|.++.+.++.||+.+
T Consensus 207 ~~~--Gad~I~l~D-------T~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 207 YDM--GCYEISLGD-------TIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHc--CCCEEEecC-------CcCCcCHHHHHHHHHHHHHhC
Confidence 442 122333321 222477999999999998754
No 151
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=20.04 E-value=1.9e+02 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 024925 158 IGKKAAYALSEGLGVIACIGE 178 (260)
Q Consensus 158 I~~Kv~~Al~~gL~pIlCIGE 178 (260)
+.+++++|.+.|..-++.||+
T Consensus 364 l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 364 FHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred HHHHHHHHHHcCCCEEEEEec
Confidence 445555555555555555554
No 152
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.01 E-value=7e+02 Score=23.05 Aligned_cols=87 Identities=20% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCChHHHHHHHHHHHHhcCCCCC
Q 024925 129 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE-QLQEREAGKTFDVCFQQLKAYADAIPSWD 207 (260)
Q Consensus 129 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE-~leere~g~~~~vl~~Ql~~~l~~i~~~~ 207 (260)
.+.+++.|++.+||=-- -+.|.++.. ..|.++||.+|.=|-- +.++| ++.+.+.-+.
T Consensus 108 ~~~~~~aGvdGlIipDL----P~ee~~~~~----~~~~~~gl~~I~lv~p~t~~~R------------i~~i~~~a~g-- 165 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDL----PPEESEELR----EAAKKHGLDLIPLVAPTTPEER------------IKKIAKQASG-- 165 (259)
T ss_dssp HHHHHHHTEEEEEETTS----BGGGHHHHH----HHHHHTT-EEEEEEETTS-HHH------------HHHHHHH-SS--
T ss_pred HHHHHHcCCCEEEEcCC----ChHHHHHHH----HHHHHcCCeEEEEECCCCCHHH------------HHHHHHhCCc--
Confidence 67899999999998432 234444444 5688899999988876 44444 4444332111
Q ss_pred ceEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHH
Q 024925 208 NVVIAYEPVWAIG-TGKV-ATPEQAQEVHAALRDWL 241 (260)
Q Consensus 208 ~iiIAYEPvWAIG-TG~~-aspe~iqe~~~~IR~~l 241 (260)
+.|-.. .-| ||.- .-++++.+..+.||+..
T Consensus 166 ---FiY~vs-~~GvTG~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 166 ---FIYLVS-RMGVTGSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp ---EEEEES-SSSSSSTTSSCHHHHHHHHHHHHHTT
T ss_pred ---EEEeec-cCCCCCCcccchHHHHHHHHHHHhhc
Confidence 224321 133 5553 45778888888888764
No 153
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=20.00 E-value=91 Score=31.22 Aligned_cols=26 Identities=31% Similarity=0.175 Sum_probs=22.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHH
Q 024925 217 WAIGTGKVATPEQAQEVHAALRDWLK 242 (260)
Q Consensus 217 WAIGTG~~aspe~iqe~~~~IR~~l~ 242 (260)
-|||||.-+.++++..+++.|++...
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evtg 256 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVTG 256 (471)
T ss_pred eeeccCcCCChhHHHHHHHHHHHHhC
Confidence 49999999999999999998877653
Done!