RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024925
(260 letters)
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 354 bits (910), Expect = e-124
Identities = 195/262 (74%), Positives = 218/262 (83%), Gaps = 18/262 (6%)
Query: 1 MASMISTNCAQFSGLRRSSPT---------QSYSQHVNSHLRLVSS-----RRPRRSSSV 46
MA+ T FSGLRR SP QS+ VNS RLVSS R PR V
Sbjct: 1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPR---GV 57
Query: 47 VAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTD 106
VAMA S KFFVGGNWKCNGTK+SI KL+SDLN A LEADVDVVV+PPFVYIDQVK+SLTD
Sbjct: 58 VAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTD 117
Query: 107 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYAL 166
RI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYAL
Sbjct: 118 RIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYAL 177
Query: 167 SEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVAT 226
SEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+
Sbjct: 178 SEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVAS 237
Query: 227 PEQAQEVHAALRDWL-KNMSQQ 247
P+QAQEVH A+R WL KN+S++
Sbjct: 238 PQQAQEVHVAVRGWLKKNVSEE 259
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 295 bits (758), Expect = e-101
Identities = 101/192 (52%), Positives = 121/192 (63%), Gaps = 2/192 (1%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDA-KLEADVDVVVAPPFVYIDQVKNSLTD-RIEIAA 112
V GNWK NGT +L LN K E+ V+VVVAPPF Y+ V +L +I++ A
Sbjct: 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGA 60
Query: 113 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172
QN GAFTGEIS E LKD G K+V++GHSERR GE D+ + KK AL GL
Sbjct: 61 QNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTP 120
Query: 173 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQE 232
I C+GE L+EREAGKT +V QL A + VVIAYEPVWAIGTGK A+PEQAQE
Sbjct: 121 ILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQE 180
Query: 233 VHAALRDWLKNM 244
VHA +R L +
Sbjct: 181 VHAFIRKLLAEL 192
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 289 bits (742), Expect = 5e-99
Identities = 110/199 (55%), Positives = 136/199 (68%), Gaps = 4/199 (2%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEAD-VDVVVAPPFVYIDQVKNSLTD-R 107
K FVGGNWKCNGTK SI +L+ N K + + VDVVVAPP ++I V+ L +
Sbjct: 1 MMKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKN 60
Query: 108 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS 167
+I++QN + GAFTGEIS E LKD+G W +LGHSERR GE ++ + +K AL
Sbjct: 61 FKISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALE 120
Query: 168 EGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVA 225
GL VI CIGE L+EREAG+T DV +QL+A + +WDN+VIAYEPVWAIGTGKVA
Sbjct: 121 NGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVA 180
Query: 226 TPEQAQEVHAALRDWLKNM 244
TPEQAQEVHA +R WL
Sbjct: 181 TPEQAQEVHAFIRKWLAEK 199
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 285 bits (731), Expect = 1e-97
Identities = 119/193 (61%), Positives = 148/193 (76%), Gaps = 2/193 (1%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKL--EADVDVVVAPPFVYIDQVKNSLTDRIE 109
+ KFFVGGNWKCNGT E + K+V+ LN+A++ E V+VVV+PPFV++ VK+ L +
Sbjct: 2 ARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQ 61
Query: 110 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 169
+AAQN WV KGGAFTGEIS E L ++G WV+LGHSERR ++GE ++F+G K AYALS+G
Sbjct: 62 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQG 121
Query: 170 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 229
L VIAC+GE L++RE+G T DV Q KA AD + W NVV+AYEPVWAIGTGKVATP Q
Sbjct: 122 LKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPAQ 181
Query: 230 AQEVHAALRDWLK 242
AQEVH LR WL
Sbjct: 182 AQEVHDELRKWLH 194
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 268 bits (688), Expect = 7e-91
Identities = 99/196 (50%), Positives = 122/196 (62%), Gaps = 6/196 (3%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDA-KLEADVDVVVAPPFVYIDQVKNSL-TDRIEIA 111
K + GNWK N T LV +L A V+V VAPPF + VK +L I++
Sbjct: 2 KPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKLG 61
Query: 112 AQN-SWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGL 170
AQN G AFTGEIS E LKD+G K+V++GHSERR GE D+ + KK AL GL
Sbjct: 62 AQNVHPEDSG-AFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGL 120
Query: 171 GVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPE 228
I C+GE L+EREAGKT +V +QL+A + + N+VIAYEPVWAIGTGK ATPE
Sbjct: 121 TPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATPE 180
Query: 229 QAQEVHAALRDWLKNM 244
QAQEVHA +R L +
Sbjct: 181 QAQEVHAFIRAVLAEL 196
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase.
Length = 242
Score = 267 bits (686), Expect = 9e-91
Identities = 102/204 (50%), Positives = 131/204 (64%), Gaps = 3/204 (1%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLEAD-VDVVVAPPFVYIDQVKNSLTD-RIEIAA 112
+ GNWK N T +L L A L+ D V+VVVAPPF Y+ VK +L I++ A
Sbjct: 1 PIIIGNWKMNKTLAEALELAKALLAAALKNDGVEVVVAPPFTYLSPVKQALKGSNIKVGA 60
Query: 113 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172
QN GAFTGE+S E LKD+G +V++GHSERR GE D+ + KK AL GL
Sbjct: 61 QNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLTP 120
Query: 173 IACIGEQLQEREAGKTFDVCFQQLKAYADAIP-SWDNVVIAYEPVWAIGTGKVATPEQAQ 231
+ C+GE L+EREAGKT +V +QLKA + W N++IAYEPVWAIGTGKVATPEQAQ
Sbjct: 121 VLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEWKNLIIAYEPVWAIGTGKVATPEQAQ 180
Query: 232 EVHAALRDWLKNMSQQTLPLKHVL 255
EVHA +R +L +S++ +L
Sbjct: 181 EVHAFIRKYLAELSKEVAEEVRIL 204
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 243 bits (622), Expect = 6e-81
Identities = 95/195 (48%), Positives = 117/195 (60%), Gaps = 5/195 (2%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEADVDVVVAPPFVYIDQVKNSL-TDRIEI 110
K V GNWK N T LV L E DV+V +APPF + +V + I++
Sbjct: 3 KPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKV 62
Query: 111 AAQN-SWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 169
AQN G AFTGEIS E LKD+G K+V++GHSERR GE D+ I KK A G
Sbjct: 63 GAQNVDPEDSG-AFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG 121
Query: 170 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 229
L I C+GE L+EREAGKT +V +QL A A+ N+VIAYEPVWAIGTGK A+P
Sbjct: 122 LTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPAD 181
Query: 230 AQEVHAALRDWLKNM 244
A+EVHA +R L +
Sbjct: 182 AEEVHAFIRAVLAEL 196
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 211 bits (540), Expect = 2e-64
Identities = 93/194 (47%), Positives = 122/194 (62%), Gaps = 3/194 (1%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSL-TDRIEIAA 112
K + GNWK N T + V++L +A +VVV PPF + VK ++ I++ A
Sbjct: 398 KPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLGA 457
Query: 113 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172
QN + + GA+TGEIS L +IG ++V++GHSERR GE D+ + KK AL GL
Sbjct: 458 QNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTP 517
Query: 173 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQA 230
I C+GE L ERE+G TFDV QLKA + + + VVIAYEPVWAIGTGKVATPEQA
Sbjct: 518 ILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVATPEQA 577
Query: 231 QEVHAALRDWLKNM 244
QEVHA +R + +
Sbjct: 578 QEVHAFIRKLVAEL 591
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
Length = 260
Score = 169 bits (430), Expect = 5e-52
Identities = 81/205 (39%), Positives = 115/205 (56%), Gaps = 10/205 (4%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSL--------T 105
+ V GNWK NG+ +L +VV+ PP +Y++ V+ L
Sbjct: 5 RPMVAGNWKMNGSAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDG 64
Query: 106 DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYA 165
+ + AQN GA+TGE+S + LKD GC++V++GHSERR + GE + +K A A
Sbjct: 65 SLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAA 124
Query: 166 LSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGK 223
GL I C+GE REA +TF+V ++L + ++DN +IAYEP+WA+GTGK
Sbjct: 125 QKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVGTGK 184
Query: 224 VATPEQAQEVHAALRDWLKNMSQQT 248
ATPEQAQEVHA +R L +S
Sbjct: 185 SATPEQAQEVHAFIRKRLSEVSPFI 209
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 155 bits (394), Expect = 3e-47
Identities = 62/185 (33%), Positives = 84/185 (45%), Gaps = 26/185 (14%)
Query: 56 FVGGNWK-CNGTKESITKLVSDLN-DAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQ 113
V GNWK N ++ V+ + + EA V V VAPPFV + +K + I + AQ
Sbjct: 1 LVIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREV--EIPVYAQ 58
Query: 114 NSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI 173
+ GA TGEIS E LKDIG K ++ HSERR + + I KK A GL +
Sbjct: 59 HVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD----IEKKIARLKELGLTSV 114
Query: 174 ACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 233
C + A A + V+A EP IGTG +P Q + V
Sbjct: 115 VCT-------------NNVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEVV 156
Query: 234 HAALR 238
H ++R
Sbjct: 157 HGSVR 161
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
Length = 237
Score = 149 bits (378), Expect = 2e-44
Identities = 67/172 (38%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLND--AKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAA 112
F + NWK NG + + +L++ A E + +V+ PPF + I++ A
Sbjct: 3 FLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSF-VECNPNIKLGA 61
Query: 113 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172
QN + G G +TGEIS + LK+ GC +V+LGHSERR E D I KA A+ GL
Sbjct: 62 QNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIP 121
Query: 173 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKV 224
I C+GE L++RE G T DV +Q + +P +IAYEPVWAIG +
Sbjct: 122 IICVGETLEDRENGMTKDVLLEQCS---NCLPKHGEFIIAYEPVWAIGGSTI 170
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 144 bits (363), Expect = 4e-42
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 3/192 (1%)
Query: 59 GNWKCNGTKESITKLVSDLNDAKLEAD-VDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWV 117
GNWK NG SI +L S ++ + + V + V P VY+ +V + L +++ + QN
Sbjct: 7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITF 66
Query: 118 GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 177
GA+TGEIS L+DIGC ++++GHSERR + E D+ + KK + + + CIG
Sbjct: 67 YDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIG 126
Query: 178 EQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA 235
E L +R++GK V QL + ++ VVIAYEPVWAIGTG VA+ EQ QE H
Sbjct: 127 ESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQ 186
Query: 236 ALRDWLKNMSQQ 247
+R L + ++
Sbjct: 187 FIRSLLAKVDER 198
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 107 bits (267), Expect = 4e-27
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDA----KLEADVDVVVAPPFVY----IDQVKN 102
+ K + G N K +S+L K + D+++ V P ++ ++ +
Sbjct: 1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAAS 60
Query: 103 SLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKK 161
+I+I AQN G FTGEIS LK++G + V++GHSERRHV+ E DQ +K
Sbjct: 61 ETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEK 120
Query: 162 AAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKA--YADAIPSWDNVVIAYEPVWAI 219
AL G + CIGE L+++ + +V QLK + + ++ IAYEPVWAI
Sbjct: 121 VLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQLPHLFIAYEPVWAI 180
Query: 220 GTGKV-ATPEQAQEVHAALRDWLKNM 244
G G + A+ E A E HA ++ L +
Sbjct: 181 GEGGIPASAEYADEKHAIIKQCLFEL 206
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
Length = 260
Score = 102 bits (255), Expect = 5e-26
Identities = 70/200 (35%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Query: 54 KFFVGGNWKC-NGTKES---ITKLVSDLNDAKLEADVDVVVAPPFVYI-DQVKNSLT--- 105
K + G N K G ++ + KL +D + D+++ V P F I D + +L
Sbjct: 3 KIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPH 62
Query: 106 -DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAY 164
I I AQN G FTG+IS LK+IG + V++GHSERRH GE DQ K
Sbjct: 63 DHPIIIGAQNMNPNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLA 122
Query: 165 ALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTG 222
AL + C+GE L+++ G + ++ QLK I + IAYEPVWAIG
Sbjct: 123 ALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQLAKLRIAYEPVWAIGEA 182
Query: 223 KV-ATPEQAQEVHAALRDWL 241
+ A+ + A E HA ++ L
Sbjct: 183 GIPASADYADEKHAVIKQCL 202
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 58.3 bits (142), Expect = 2e-10
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 83 EADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVL 142
E V + VAP + I +V + I + AQ+ + G+ TG I E +KD G ++
Sbjct: 34 ETGVRIAVAPQALDIRRVAEEVD--IPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLI 91
Query: 143 GHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA 202
HSERR + + I A GL + C + + A A
Sbjct: 92 NHSERRLTLAD----IEAVVERAKKLGLESVVC------------VNNP--ETSAAAAAL 133
Query: 203 IPSWDNVVIAYEPVWAIGTG 222
P + +A EP IGTG
Sbjct: 134 GPDY----VAVEPPELIGTG 149
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 32.8 bits (75), Expect = 0.19
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 152 GEDDQFIGKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLKAYADAIPSW--DN 208
GE+ FI + A G V+ E+ Q R A + ++C +AY
Sbjct: 449 GEER-FI-ETAKLIKEYGAAVVVMAFDEEGQARTADRKIEIC---KRAYNILTEKVGFPP 503
Query: 209 VVIAYEP-VWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVL 255
I ++P + I TG A A+R W+K + LP +
Sbjct: 504 EDIIFDPNILTIATGIEEHRRYAINFIEAIR-WIK----EELPDAKIS 546
>gnl|CDD|218664 pfam05626, DUF790, Protein of unknown function (DUF790). This
family consists of several hypothetical archaeal
proteins of unknown function.
Length = 375
Score = 29.6 bits (67), Expect = 1.6
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 68 ESITKLVSDLNDAKLEADVDVVVAPPFVYIDQ---VKNSLTDRIEIAAQNSWVGKGGAFT 124
E K S + +E + + + VYI K +EI G +T
Sbjct: 270 EEFAKKWSRILGWDVEREPEPIKIGGRVYIPDFLLNKGGKKVYVEIV---------GFWT 320
Query: 125 GEI---SVEQLKDIGCKWVVLGHSER 147
E +E+L+ G ++L + E
Sbjct: 321 PEYLKKKLEKLRKSGIPLLLLVNEEL 346
>gnl|CDD|213839 TIGR03629, arch_S13P, archaeal ribosomal protein S13P. This model
describes exclusively the archaeal ribosomal protein
S13P. It excludes the homologous eukaryotic 40S
ribosomal protein S18 and bacterial 30S ribosomal
protein S13 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 144
Score = 28.4 bits (64), Expect = 2.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 158 IGKKAAYALSEGLGV--IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSW 206
IG++ A A++ LGV A +G L + E K + ++ Y IPSW
Sbjct: 29 IGRRFARAIARKLGVDPNAKLGY-LDDEEIEKLEEA----VENYEYGIPSW 74
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a
glycogen binding domain, associated with the catalytic
domain of AMP-activated protein kinase beta subunit. E
or "early" set domains are associated with the
catalytic domain of AMP-activated protein kinase beta
subunit glycogen binding domain at the N-terminal end.
AMPK is a metabolic stress sensing protein that senses
AMP/ATP and has recently been found to act as a
glycogen sensor as well. The protein functions as an
alpha-beta-gamma heterotrimer. This N-terminal domain
is the glycogen binding domain of the beta subunit.
This domain is also a member of the CBM48 (Carbohydrate
Binding Module 48) family whose members include
pullulanase, maltooligosyl trehalose synthase, starch
branching enzyme, glycogen branching enzyme, glycogen
debranching enzyme, and isoamylase.
Length = 80
Score = 27.2 bits (61), Expect = 2.7
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 54 KFFVGGNWKCNGTKESIT 71
KF V G W + ++T
Sbjct: 51 KFIVDGEWVHDPDLPTVT 68
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 28.6 bits (65), Expect = 3.5
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 66 TKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIE 109
++++ ++V D+ A L+ADV+V VK L+ I+
Sbjct: 19 DEKTVKEVVKDIQRALLQADVNV---------KLVKE-LSKSIK 52
>gnl|CDD|119352 cd02873, GH18_IDGF, The IDGF's (imaginal disc growth factors) are a
family of growth factors identified in insects that
include at least five members, some of which are encoded
by genes in a tight cluster. The IDGF's have an
eight-stranded alpha/beta barrel fold and are related to
the glycosyl hydrolase family 18 (GH18) chitinases, but
they have an amino acid substitution known to abolish
chitinase catalytic activity. IDGFs may have evolved
from chitinases to gain new functions as growth factors,
interacting with cell surface glycoproteins involved in
growth-promoting processes.
Length = 413
Score = 28.4 bits (64), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 153 EDDQFIGKKAAYALSEGLGVIA 174
ED KA YA ++GLG +A
Sbjct: 364 EDPDTAANKAGYAKAKGLGGVA 385
>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 360
Score = 28.1 bits (64), Expect = 4.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 100 VKNSLTDRIEIAAQN 114
VK+ T ++EI +QN
Sbjct: 283 VKDLETGKVEITSQN 297
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 28.0 bits (62), Expect = 4.5
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 213 YEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQT----LPLKHV 254
YEPV IG G T +A++ H+ LK++ QT LPL V
Sbjct: 2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTV 47
>gnl|CDD|150547 pfam09887, DUF2114, Uncharacterized protein conserved in archaea
(DUF2114). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 448
Score = 28.0 bits (63), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 66 TKESITKLVSD-----LNDAKL--EADVDVVV 90
T+ES+ +LV D L A L E D+D VV
Sbjct: 63 TRESVAELVRDTLLESLKKAGLDIENDLDFVV 94
>gnl|CDD|203280 pfam05579, Peptidase_S32, Equine arteritis virus serine
endopeptidase S32. Serine peptidases involved in
processing nidovirus polyprotein.
Length = 425
Score = 27.8 bits (62), Expect = 5.6
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 54 KFFVGGNWK------CNGTKESIT-KLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTD 106
++F GN + C T ES+T L L+D L+ FV ++N+
Sbjct: 347 RYFAEGNLREGVSQSCGMTPESLTAALACTLSDDDLDFLSRHTDFKCFVSASNMRNAAGQ 406
Query: 107 RIEIA 111
IE A
Sbjct: 407 FIEAA 411
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 27.5 bits (61), Expect = 8.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 226 TPEQAQEVHAALRDWLKNMSQQTLPL 251
+ AQ++ L WL +++QT
Sbjct: 309 SAAAAQQIEQLLTQWLGALAEQTWAE 334
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 27.3 bits (60), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 70 ITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQN 114
+TKL A + VD VV+ P Y D + S+ D +IA N
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLN 165
>gnl|CDD|220470 pfam09920, DUF2150, Uncharacterized protein conserved in archaea
(DUF2150). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 190
Score = 26.9 bits (60), Expect = 9.4
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 42 RSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD 87
++S V A++ ++ GG I +LV A+ E D+D
Sbjct: 94 QTSLVAVFAAAEEYLEGGFDP----DADIKELVKAAAKAEAEEDLD 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.386
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,021,545
Number of extensions: 1221946
Number of successful extensions: 1272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 37
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)