BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024926
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ED68|Y1295_ARATH Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis
thaliana GN=At1g22950 PE=2 SV=2
Length = 397
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 162/255 (63%), Positives = 208/255 (81%)
Query: 5 SVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRF 64
S P+F+ A +E +FRS M E PGI+TFEM +P+FCEMLL+EVE+ E+WV+D+R
Sbjct: 132 SFFAPSFLGAFSRKSEPNFRSSMVESYPGIFTFEMFKPQFCEMLLAEVEHMEKWVYDSRS 191
Query: 65 RIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGM 124
IMRPNTMN FG VLDDFG ++ML KL++DFI PI++V FPEV G++LDSHHG++VEYG
Sbjct: 192 TIMRPNTMNNFGVVLDDFGFDSMLQKLVDDFISPIAQVLFPEVCGTSLDSHHGYIVEYGK 251
Query: 125 DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYA 184
DRDV+LGFHVDDSEV+LNVCLG++FSGGEL+FRGVRCDKHVN+++ +E+ DYSHVPG+A
Sbjct: 252 DRDVDLGFHVDDSEVSLNVCLGKQFSGGELYFRGVRCDKHVNSDSTEKEVYDYSHVPGHA 311
Query: 185 VLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISI 244
+LHRGRHRHGARATTSG R NL++WCRSS FRE+K YQ++ S WC C+ +K+ RQ SI
Sbjct: 312 ILHRGRHRHGARATTSGHRANLILWCRSSTFREMKNYQRDFSGWCGGCKLDKQRRQRDSI 371
Query: 245 AATKQELLKRIGNTS 259
ATK+ L ++ +
Sbjct: 372 NATKEILARKAAEKT 386
>sp|Q6N063|OGFD2_HUMAN 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2
Length = 350
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 115/203 (56%), Gaps = 19/203 (9%)
Query: 34 IYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGL-ETMLDKLM 92
IY + FC+ LL E+E+FE+ + RPNTMN +G +L + GL E ++ L
Sbjct: 139 IYRVPVFTAPFCQALLEELEHFEQ----SDMPKGRPNTMNNYGVLLHELGLDEPLMTPLR 194
Query: 93 NDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGG 152
F++P+ + +P+ GG LDSH FVV+Y +D+ELG H D++E+TLNV LG+ F+GG
Sbjct: 195 ERFLQPLMALLYPDCGGGRLDSHRAFVVKYAPGQDLELGCHYDNAELTLNVALGKVFTGG 254
Query: 153 ELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRS 212
L+F G+ T E L+ HV G VLHRG HGAR +G R NL+VW R+
Sbjct: 255 ALYFGGL-----FQAPTALTEPLEVEHVVGQGVLHRGGQLHGARPLGTGERWNLVVWLRA 309
Query: 213 SVFRELKKYQKECSSWCAECQRE 235
S R +S C C RE
Sbjct: 310 SAVR---------NSLCPMCCRE 323
>sp|Q28C22|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 2 OS=Xenopus tropicalis GN=ogfod2 PE=2 SV=1
Length = 349
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 11 FVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPN 70
+ K+ + N E + + IY + P FC L+ E+ENFER + RPN
Sbjct: 112 YSKSPQANVEGLLHHLHSITDKRIYRLPVFIPEFCAKLVEELENFER----SDLPKGRPN 167
Query: 71 TMNKFGAVLDDFG-LETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVE 129
TMN +G +L++ G ++ + L +I P++ + FP+ GG LDSH FVV+Y + D++
Sbjct: 168 TMNNYGILLNELGFVDALTAPLCEKYIEPLTSLLFPDWGGGCLDSHRAFVVKYALQEDLD 227
Query: 130 LGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRG 189
L H D++EVTLNV LG+EF+ G L+F ++ + VN T +E H+ G +LHRG
Sbjct: 228 LSCHYDNAEVTLNVSLGKEFTDGNLYFSDMK-EVPVNERTYAE----VEHITGQGILHRG 282
Query: 190 RHRHGARATTSGSRVNLLVWCRSSVFR 216
+H HGA +SG R NL++W R+S R
Sbjct: 283 QHVHGALPISSGERWNLILWMRASDVR 309
>sp|A3KGZ2|OGFD2_DANRE 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 2 OS=Danio rerio GN=ogfod2 PE=2 SV=1
Length = 345
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 123/216 (56%), Gaps = 16/216 (7%)
Query: 5 SVLVPAFVKAVR------DNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERW 58
S L P ++ V+ N + + I E ++ F++ + FC+ LL E+E+FE+
Sbjct: 96 SFLAPELLEMVKYCASSEANVQGLLKLIQTEAASRVFRFQVFRKEFCKDLLEELEHFEQ- 154
Query: 59 VHDTRFRIMRPNTMNKFGAVLDDFGL-ETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHG 117
+ RPNTMN +G VL++ G E + L ++RP++ + + + GG+ LDSH
Sbjct: 155 ---SDAPKGRPNTMNNYGIVLNELGFDEGFITPLREVYLRPLTALLYSDCGGNCLDSHKA 211
Query: 118 FVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDY 177
FVV+Y M D+ L +H D+SEVTLNV LG++F+ G LFF +R E ++
Sbjct: 212 FVVKYDMHEDLNLSYHYDNSEVTLNVSLGKDFTEGNLFFGDMR-----QVPLSETECVEV 266
Query: 178 SHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSS 213
H +LHRG+H HGA + +SG+R NL++W R+S
Sbjct: 267 EHRVTEGLLHRGQHMHGALSISSGTRWNLIIWMRAS 302
>sp|Q9CQ04|OGFD2_MOUSE 2-oxoglutarate and iron-dependent oxygenase domain-containing
protein 2 OS=Mus musculus GN=Ogfod2 PE=2 SV=1
Length = 349
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 10/184 (5%)
Query: 34 IYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLE-TMLDKLM 92
IY + +FC+ LL E+E+FE+ + RPNTMN G ++ + GL+ ++ L
Sbjct: 138 IYRVPVFSAKFCQTLLEELEHFEQ----SDMPKGRPNTMNNHGVLMYELGLDDPLVTPLR 193
Query: 93 NDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGG 152
F+ P+ + +P+ GG LDSH FVV+Y + +D++LG H D++E+TLNV LG++F+GG
Sbjct: 194 ERFLLPLMALLYPDYGGGYLDSHRAFVVKYALGQDLDLGCHYDNAELTLNVALGKDFTGG 253
Query: 153 ELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRS 212
L+F G+ +E L+ HV G +LHRG HGAR G R NL+VW R+
Sbjct: 254 ALYFGGL-----FQAPAALKETLEVEHVVGSGILHRGGQLHGARPLCKGERWNLVVWLRA 308
Query: 213 SVFR 216
S R
Sbjct: 309 SAVR 312
>sp|Q20679|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-dioxygenase OS=Caenorhabditis
elegans GN=let-268 PE=1 SV=1
Length = 730
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 23/187 (12%)
Query: 26 IMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNTMNKFGAVLDD 81
++ + P +Y F ++ RFCE L+ E+E F RW +D R N + ++
Sbjct: 549 VVDQACPDVYDFPLMSERFCEELIEEMEGFGRWSDGSNNDKRLAGGYENVPTR-DIHMNQ 607
Query: 82 FGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTL 141
G E M+ ++RP+ + F ++S+ FVV Y + L H D S ++
Sbjct: 608 VGFERQWLYFMDTYVRPVQEKTFIGYYHQPVESNMMFVVRYKPEEQPSLRPHHDASTFSI 667
Query: 142 NVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGAR 196
++ L GR++ GG GVR ++ N ++E+ GYA++ GR H H
Sbjct: 668 DIALNKKGRDYEGG-----GVRYIRY-NCTVPADEV-------GYAMMFPGRLTHLHEGL 714
Query: 197 ATTSGSR 203
ATT G+R
Sbjct: 715 ATTKGTR 721
>sp|Q9R0E1|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Mus musculus
GN=Plod3 PE=1 SV=1
Length = 741
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 25 SIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNTMNKFGAVLD 80
++ +P P +Y F +L + C+ L+ E+E++ +W D+R N + +
Sbjct: 560 GLVEQPCPDVYWFPLLTEQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMK 618
Query: 81 DFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVT 140
G E +L+ ++ P+++ FP T + FVV Y D L H D S T
Sbjct: 619 QVGYEDQWLQLLRTYVGPMTEYLFPGYHTKT-RAVMNFVVRYRPDEQPSLRPHHDSSTFT 677
Query: 141 LNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGA 195
LNV L G ++ GG F +R D +++ + G+A+LH GR H H
Sbjct: 678 LNVALNHKGVDYEGGGCRF--LRYDCRISSPRK-----------GWALLHPGRLTHYHEG 724
Query: 196 RATTSGSR 203
TT G+R
Sbjct: 725 LPTTRGTR 732
>sp|Q5U367|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus
norvegicus GN=Plod3 PE=2 SV=1
Length = 741
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 26 IMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNTMNKFGAVLDD 81
++ +P P +Y F +L + C+ L+ E+E++ +W D+R N + +
Sbjct: 561 LVEQPCPDVYWFPLLTEQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMKQ 619
Query: 82 FGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTL 141
G E +L+ ++ P+++ FP T + FVV Y D L H D S TL
Sbjct: 620 VGYEDQWLQLLRTYVGPMTEHLFPGYHTKT-RAVMNFVVRYRPDEQPSLRPHHDSSTFTL 678
Query: 142 NVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGAR 196
NV L G ++ GG F +R D V++ + G+A+LH GR H H
Sbjct: 679 NVALNHKGVDYEGGGCRF--LRYDCRVSSPRK-----------GWALLHPGRLTHYHEGL 725
Query: 197 ATTSGSR 203
TT G+R
Sbjct: 726 PTTRGTR 732
>sp|P24802|PLOD1_CHICK Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Gallus gallus
GN=PLOD1 PE=1 SV=1
Length = 730
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 25/201 (12%)
Query: 13 KAVRDNTEASFRSIMAE-PIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIM 67
K + +N A+ + + E P P +Y F + C+ L+ E+E++ +W D+R +
Sbjct: 536 KYIHENYTAALKGKLVEMPCPDVYWFPIFTDTACDELVEEMEHYGKWSTGDNTDSRIQGG 595
Query: 68 RPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRD 127
N + ++ G E K + D+I PI++ +P T FVV Y D
Sbjct: 596 YEN-VPTIDIHMNQIGFEREWYKFLLDYIAPITEKLYPGYYTKT-QFELAFVVRYKPDEQ 653
Query: 128 VELGFHVDDSEVTLNVCLGR---EFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYA 184
L H D S T+N+ L R ++ GG F C + G+
Sbjct: 654 PSLMPHHDASTFTINIALNRVGIDYEGGGCRFLRYNCSIRAPRK-------------GWT 700
Query: 185 VLHRGR--HRHGARATTSGSR 203
++H GR H H TT G+R
Sbjct: 701 LMHPGRLTHYHEGLPTTKGTR 721
>sp|Q5R6K5|PLOD3_PONAB Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Pongo abelii
GN=PLOD3 PE=2 SV=1
Length = 738
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 24/188 (12%)
Query: 25 SIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNTMNKFGAVLD 80
I+ +P P +Y F +L + C+ L++E+E++ +W D+R N + +
Sbjct: 557 GIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMK 615
Query: 81 DFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVT 140
G E +L+ ++ P+++ FP + + FVV Y D L H D S T
Sbjct: 616 QVGYEDQWLQLLRTYVGPMTESLFPGY-HTKARAVMNFVVRYRPDEQPSLRPHHDSSTFT 674
Query: 141 LNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGA 195
LNV L G ++ GG F +R D +++ + G+A+LH GR H H
Sbjct: 675 LNVALNHKGLDYEGGGCRF--LRYDCVISSPRK-----------GWALLHPGRLTHYHEG 721
Query: 196 RATTSGSR 203
TT G+R
Sbjct: 722 LPTTWGTR 729
>sp|O60568|PLOD3_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens
GN=PLOD3 PE=1 SV=1
Length = 738
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 24/188 (12%)
Query: 25 SIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNTMNKFGAVLD 80
I+ +P P +Y F +L + C+ L++E+E++ +W D+R N + +
Sbjct: 557 GIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMK 615
Query: 81 DFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVT 140
G E +L+ ++ P+++ FP + + FVV Y D L H D S T
Sbjct: 616 QVGYEDQWLQLLRTYVGPMTESLFPGY-HTKARAVMNFVVRYRPDEQPSLRPHHDSSTFT 674
Query: 141 LNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGA 195
LNV L G ++ GG F +R D +++ + G+A+LH GR H H
Sbjct: 675 LNVALNHKGLDYEGGGCRF--LRYDCVISSPRK-----------GWALLHPGRLTHYHEG 721
Query: 196 RATTSGSR 203
TT G+R
Sbjct: 722 LPTTWGTR 729
>sp|Q9R0B9|PLOD2_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Mus musculus
GN=Plod2 PE=2 SV=2
Length = 737
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 16 RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNT 71
RD ++ +I+ +P P ++ F + R C+ L+ E+E++ +W HD+R N
Sbjct: 547 RDYSKIFTENIVEQPCPDVFWFPIFSERACDELVEEMEHYGKWSGGKHHDSRISGGYENV 606
Query: 72 MNKFGAVLDDFGLETMLDKLMNDFIRPIS-KVF--FPEVGGSTLDSHHGFVVEYGMDRDV 128
+ GLE + + +FI P++ KVF + G + L+ FVV+Y +R
Sbjct: 607 PTD-DIHMKQIGLENVWLHFIREFIAPVTLKVFAGYYTKGFALLN----FVVKYSPERQR 661
Query: 129 ELGFHVDDSEVTLNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAV 185
L H D S T+N+ L G +F GG F C S G++
Sbjct: 662 SLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIE-------------SPRKGWSF 708
Query: 186 LHRGR--HRHGARATTSGSR 203
+H GR H H +G+R
Sbjct: 709 MHPGRLTHLHEGLPVKNGTR 728
>sp|Q811A3|PLOD2_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Rattus
norvegicus GN=Plod2 PE=2 SV=1
Length = 737
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 16 RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNT 71
RD ++ +I+ +P P ++ F + R C+ L+ E+E++ +W HD+R N
Sbjct: 547 RDYSKIFTENIVEQPCPDVFWFPIFSERACDELVEEMEHYGKWSGGKHHDSRISGGYENV 606
Query: 72 MNKFGAVLDDFGLETMLDKLMNDFIRPIS-KVF--FPEVGGSTLDSHHGFVVEYGMDRDV 128
+ LE + + +FI P++ KVF + G + L+ FVV+Y +R
Sbjct: 607 PTD-DIHMKQIDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLN----FVVKYSPERQR 661
Query: 129 ELGFHVDDSEVTLNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAV 185
L H D S T+N+ L G +F GG F C S G++
Sbjct: 662 SLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIE-------------SPRKGWSF 708
Query: 186 LHRGR--HRHGARATTSGSR 203
+H GR H H +G+R
Sbjct: 709 MHPGRLTHLHEGLPVKNGTR 728
>sp|O00469|PLOD2_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Homo sapiens
GN=PLOD2 PE=1 SV=2
Length = 737
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 30/200 (15%)
Query: 16 RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNT 71
RD ++ +I+ +P P ++ F + + C+ L+ E+E++ +W HD+R N
Sbjct: 547 RDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGKWSGGKHHDSRISGGYENV 606
Query: 72 MNKFGAVLDDFGLETMLDKLMNDFIRPIS-KVF--FPEVGGSTLDSHHGFVVEYGMDRDV 128
+ LE + + +FI P++ KVF + G + L+ FVV+Y +R
Sbjct: 607 PTD-DIHMKQVDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLN----FVVKYSPERQR 661
Query: 129 ELGFHVDDSEVTLNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAV 185
L H D S T+N+ L G +F GG F C + E+ + G++
Sbjct: 662 SLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNC----SIESPRK---------GWSF 708
Query: 186 LHRGR--HRHGARATTSGSR 203
+H GR H H +G+R
Sbjct: 709 MHPGRLTHLHEGLPVKNGTR 728
>sp|Q9R0E2|PLOD1_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Mus musculus
GN=Plod1 PE=1 SV=1
Length = 728
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 13 KAVRDN-TEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIM 67
K + +N T+A ++ P P +Y F + C+ L+ E+E++ +W D R +
Sbjct: 534 KYIHENYTKALAGKLVETPCPDVYWFPIFTEAACDELVEEMEHYGQWSLGDNKDNRIQGG 593
Query: 68 RPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHH-GFVVEYGMDR 126
N + ++ E K + ++I P+++ +P G T FVV Y D
Sbjct: 594 YEN-VPTIDIHMNQITFEREWHKFLVEYIAPMTEKLYP--GYYTRAQFDLAFVVRYKPDE 650
Query: 127 DVELGFHVDDSEVTLNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGY 183
L H D S T+N+ L G ++ GG F C + G+
Sbjct: 651 QPSLMPHHDASTFTVNIALNRVGEDYEGGGCRFLRYNCSVRAPRK-------------GW 697
Query: 184 AVLHRGR--HRHGARATTSGSR 203
A+LH GR H H TT G+R
Sbjct: 698 ALLHPGRLTHYHEGLPTTKGTR 719
>sp|Q5UQC3|PLOD_MIMIV Procollagen lysyl hydroxylase and glycosyltransferase
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L230 PE=1
SV=1
Length = 895
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 7 LVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVH--DTRF 64
L P F+ +++ + + I + +Y+F + P FC+ ++ ++ W D+ F
Sbjct: 701 LHPEFLSHLQNFKDFDYTEICND----VYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYF 756
Query: 65 --RIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEY 122
RI + L + GL+ ++ +++ P + + T D + FVV+Y
Sbjct: 757 DPRIGGVESYPTQDTQLYEVGLDKQWHYVVFNYVAPFVRHLYNNY--KTKDINLAFVVKY 814
Query: 123 GMDRDVELGFHVDDSEVTLNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSH 179
M+R EL H D S TLN+ L G+E++ G G +H Q +++
Sbjct: 815 DMERQSELAPHHDSSTYTLNIALNEYGKEYTAG-----GCEFIRH-KFIWQGQKV----- 863
Query: 180 VPGYAVLHRGR--HRHGARATTSGSRVNLL 207
GYA +H G+ H A TSG R L+
Sbjct: 864 --GYATIHAGKLLAYHRALPITSGKRYILV 891
>sp|Q02809|PLOD1_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Homo sapiens
GN=PLOD1 PE=1 SV=2
Length = 727
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 16 RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNT 71
++ T+A ++ P P +Y F + C+ L+ E+E+F +W D R + N
Sbjct: 537 QNYTKALAGKLVETPCPDVYWFPIFTEVACDELVEEMEHFGQWSLGNNKDNRIQGGYEN- 595
Query: 72 MNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHH-GFVVEYGMDRDVEL 130
+ ++ G E K + ++I P+++ +P G T FVV Y D L
Sbjct: 596 VPTIDIHMNQIGFEREWHKFLLEYIAPMTEKLYP--GYYTRAQFDLAFVVRYKPDEQPSL 653
Query: 131 GFHVDDSEVTLNVCLGR---EFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLH 187
H D S T+N+ L R ++ GG F C + G+ ++H
Sbjct: 654 MPHHDASTFTINIALNRVGVDYEGGGCRFLRYNCSIRAPRK-------------GWTLMH 700
Query: 188 RGR--HRHGARATTSGSR 203
GR H H TT G+R
Sbjct: 701 PGRLTHYHEGLPTTRGTR 718
>sp|Q5R9N3|PLOD1_PONAB Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Pongo abelii
GN=PLOD1 PE=2 SV=1
Length = 727
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 16 RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIMRPNT 71
++ T+A ++ P P +Y F + C+ L+ E+E+F +W D R + N
Sbjct: 537 QNYTKALAGKLVETPCPDVYWFPIFTEVACDELVEEMEHFGQWSLGDNKDNRIQGGYEN- 595
Query: 72 MNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHH-GFVVEYGMDRDVEL 130
+ ++ G E K + ++I P+++ +P G T FVV Y D L
Sbjct: 596 VPTIDIHMNQIGFEREWHKFLLEYIAPMTEKLYP--GYYTRAQFDLAFVVRYKPDEQPSL 653
Query: 131 GFHVDDSEVTLNVCLGR---EFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLH 187
H D S T+N+ L R ++ GG F C + G+ ++H
Sbjct: 654 MPHHDASTFTINIALNRVGVDYEGGGCRFLRYNCSIRAPRK-------------GWTLMH 700
Query: 188 RGR--HRHGARATTSGSR 203
GR H H TT G+R
Sbjct: 701 PGRLTHYHEGLPTTRGTR 718
>sp|Q63321|PLOD1_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Rattus
norvegicus GN=Plod1 PE=2 SV=1
Length = 728
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 25/201 (12%)
Query: 13 KAVRDN-TEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIM 67
K + +N T+A ++ P P +Y F + C+ L+ E+E++ +W D R +
Sbjct: 534 KYIHENYTKALAGKLVETPCPDVYWFPIFTEVACDELVEEMEHYGQWSLGDNKDNRIQGG 593
Query: 68 RPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRD 127
N + ++ E K + ++I P+++ +P + FVV Y D
Sbjct: 594 YEN-VPTIDIHMNQITFEREWHKFLVEYIAPLTEKLYPGY-YTKAQFDLAFVVRYKPDEQ 651
Query: 128 VELGFHVDDSEVTLNVCL---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYA 184
L H D S T+N+ L G ++ GG F C + G+A
Sbjct: 652 PSLMPHHDASTFTINIALNRVGEDYEGGGCRFLRYNCSVRAPRK-------------GWA 698
Query: 185 VLHRGR--HRHGARATTSGSR 203
++H GR H H TT G+R
Sbjct: 699 LMHPGRLTHYHEGLPTTKGTR 719
>sp|O77588|PLOD1_BOVIN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Bos taurus
GN=PLOD1 PE=2 SV=2
Length = 726
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 27/202 (13%)
Query: 13 KAVRDNTEASFRSIMAE-PIPGIYTFEMLQPRFCEMLLSEVENFERWV----HDTRFRIM 67
K + +N + M E P P +Y F + C+ L+ E+E++ +W D R +
Sbjct: 532 KYIHENYTKALAGKMVEMPCPDVYWFPIFTETACDELVEEMEHYGQWSLGDNKDNRIQGG 591
Query: 68 RPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHH-GFVVEYGMDR 126
N + ++ E K + ++I P+++ +P G T FVV Y D
Sbjct: 592 YEN-VPTIDIHMNQINFEREWHKFLVEYIAPMTEKLYP--GYYTRAQFDLAFVVRYKPDE 648
Query: 127 DVELGFHVDDSEVTLNVCLGR---EFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGY 183
L H D S T+N+ L R ++ GG F C + G+
Sbjct: 649 QPSLVPHHDASTFTINIALNRVGVDYEGGGCRFLRYNCSIRAPRK-------------GW 695
Query: 184 AVLHRGR--HRHGARATTSGSR 203
++H GR H H TT G+R
Sbjct: 696 TLMHPGRLTHYHEGLPTTKGTR 717
>sp|Q087U3|Y612_SHEFN PKHD-type hydroxylase Sfri_0612 OS=Shewanella frigidimarina (strain
NCIMB 400) GN=Sfri_0612 PE=3 SV=1
Length = 226
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 129 ELGFHVDD-------------SEVTLNVCLGR--EFSGGELFFRGVRCDKHVNTETQSEE 173
E G+HVD S+V++ V L E+ GGEL + TE ++
Sbjct: 91 EYGYHVDAAIMRIPNTSEVIRSDVSMTVFLSEPEEYDGGELV---------IATEFGQQQ 141
Query: 174 ILDYSHVP-GYAVLHRGRHRHGARATTSGSRVNLLVWCRSSV 214
I +P GYAV++ H A T G R+ + W +S V
Sbjct: 142 I----KLPAGYAVVYPSSSLHKVTAVTRGQRIAAITWMQSMV 179
>sp|Q7VP04|RLMKL_HAEDU Ribosomal RNA large subunit methyltransferase K/L OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rlmL PE=3 SV=2
Length = 712
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 132 FHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH 191
F+V++ L V L G +F K V + + L+ G A +H H
Sbjct: 509 FYVNEYGAKLWVNLTDYLDTG-IFLDHRLTRKMVGQMAKGKTFLNLFAYTGSATIHAALH 567
Query: 192 RHGARATTSGSRVN-LLVWCRSSV------FRELKKYQKECSSWCAECQREKKE 238
GA+ATTS N L W ++ R + +Q +C W AEC RE+ E
Sbjct: 568 --GAKATTSVDMSNTYLNWAEQNLELNGLKSRNHRLFQADCLQWLAEC-RERFE 618
>sp|A3LNC4|U507_PICST UPF0507 protein PICST_55861 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=PICST_55861 PE=3 SV=2
Length = 1194
Score = 34.3 bits (77), Expect = 0.92, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 16 RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVH--DTRFRIMRPNTMN 73
+D+ +S RS+ + + TFE L F + + E F R H + +FR++R NT
Sbjct: 183 QDDETSSQRSVSQQEVQDSITFEKLLRSFPLLSKAVSERFYRLFHHNNHQFRVLRINTRK 242
Query: 74 KFGAVLDDFGLETMLD---KLMNDFIR 97
K + +F +MLD K++ D I+
Sbjct: 243 KLEHIRIEF--HSMLDEAYKIIQDSIK 267
>sp|A3QCQ6|CHEZ_SHELP Protein phosphatase CheZ OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=cheZ PE=3 SV=1
Length = 245
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 83 GLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMD-RDVELG-FHVDDSEVT 140
G + M D+L+ D PI K F EVG T H +V++ +D R VEL + D++
Sbjct: 24 GQQEMADELIRDIASPIQKELFDEVGRLTRQLHSA-IVDFQVDGRLVELANSEIPDAKER 82
Query: 141 LNVCL 145
LN +
Sbjct: 83 LNYVI 87
>sp|Q46S75|Y4660_CUPPJ PKHD-type hydroxylase Reut_B4660 OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=Reut_B4660 PE=3 SV=1
Length = 227
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 101 KVFFPEV----GGSTLDSHHGFVVEYGMDRDVELGFHV-DDSEVTLNVCLGREFSGGELF 155
KVF P GG D+H + Y GF V D TL + +++ GGEL
Sbjct: 78 KVFPPLFNRYEGGQAFDNHVDNAIRYLRGT----GFRVRSDLSATLFLTEPQDYDGGELV 133
Query: 156 FRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVF 215
V GY VL+ H T G+RV+ W +S V
Sbjct: 134 IEDTYGQHRVKLPA------------GYMVLYPATSLHHVTPVTRGARVSSFFWIQSMVR 181
Query: 216 RELKKYQK-ECSSWCAECQRE--KKERQCISIAATKQELLKR 254
E ++ E + + E +K+ + + LL+R
Sbjct: 182 DEGQRALLFELDTRIQQVAEEMGQKDSGVVGLTGVYHNLLRR 223
>sp|B5XT12|Y3192_KLEP3 PKHD-type hydroxylase KPK_3192 OS=Klebsiella pneumoniae (strain
342) GN=KPK_3192 PE=3 SV=1
Length = 225
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 97 RPISKVFFPEVG-GSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELF 155
R IS F G G T +GF V+ + ++ E G+ D TL +C + GGEL
Sbjct: 77 RTISAPLFNRYGPGET----YGFHVDGAVRQNAEAGWMRTDLSATLFLCDPESYEGGELV 132
Query: 156 FRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSV 214
V G+ VL+ H T G R +W +S V
Sbjct: 133 IEDTYGQHRVKLPA------------GHLVLYPASSLHCVTPVTHGVRQASFLWIQSMV 179
>sp|A5WFM3|Y1523_PSYWF PKHD-type hydroxylase PsycPRwf_1523 OS=Psychrobacter sp. (strain
PRwf-1) GN=PsycPRwf_1523 PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 104 FPEVGGSTLDSHHGFVVEYGMDRDVELGFHVD-------DSEVTLNVCLGREFSGGELFF 156
P+V L S + YGM D L H D D +TL + ++ GGEL
Sbjct: 77 LPKVIMPPLFSAYQLGQGYGMHVDNALQTHPDSKQLMRTDLSLTLFLNNPADYEGGELVI 136
Query: 157 RGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSV 214
+ + G AVL+ H TSG R+ ++ W +S V
Sbjct: 137 SDEYGEHSIKLSA------------GDAVLYPSTSLHRVNTVTSGQRLAMVTWVQSLV 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,841,501
Number of Sequences: 539616
Number of extensions: 3979680
Number of successful extensions: 8506
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8464
Number of HSP's gapped (non-prelim): 29
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)