Query 024926
Match_columns 260
No_of_seqs 172 out of 343
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 4E-47 8.6E-52 358.9 9.5 255 1-256 122-401 (415)
2 PRK05467 Fe(II)-dependent oxyg 99.9 3E-23 6.5E-28 185.5 14.3 160 34-217 2-182 (226)
3 smart00702 P4Hc Prolyl 4-hydro 99.9 8.3E-21 1.8E-25 161.4 13.2 162 32-211 1-178 (178)
4 PLN00052 prolyl 4-hydroxylase; 99.7 1.3E-15 2.9E-20 142.0 13.4 176 31-218 53-258 (310)
5 COG3128 PiuC Uncharacterized i 99.5 2.5E-13 5.5E-18 118.1 11.1 164 33-217 3-185 (229)
6 PHA02813 hypothetical protein; 99.4 1.7E-12 3.8E-17 121.9 11.3 154 32-208 5-178 (354)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.2 1.3E-11 2.7E-16 95.4 5.8 86 119-211 3-100 (100)
8 PHA02869 C4L/C10L-like gene fa 99.0 9.2E-10 2E-14 105.2 8.7 81 110-208 99-187 (418)
9 KOG1591 Prolyl 4-hydroxylase a 98.7 8.3E-08 1.8E-12 89.1 11.5 161 31-214 96-286 (289)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.6 6.5E-08 1.4E-12 74.4 4.8 79 117-211 4-97 (98)
11 KOG1971 Lysyl hydroxylase [Pos 97.9 1E-05 2.2E-10 78.0 4.3 70 26-97 343-415 (415)
12 PF09859 Oxygenase-NA: Oxygena 97.8 5.5E-05 1.2E-09 65.1 6.9 84 118-210 65-170 (173)
13 PF12851 Tet_JBP: Oxygenase do 97.8 4.3E-05 9.3E-10 65.9 5.7 72 126-211 83-170 (171)
14 PF05721 PhyH: Phytanoyl-CoA d 97.6 0.0013 2.7E-08 55.0 12.3 168 33-204 5-210 (211)
15 TIGR01762 chlorin-enz chlorina 97.5 0.004 8.7E-08 57.8 15.2 40 174-213 208-250 (288)
16 TIGR02408 ectoine_ThpD ectoine 97.5 0.0041 8.8E-08 57.0 14.8 179 32-217 28-252 (277)
17 TIGR02466 conserved hypothetic 97.1 0.016 3.4E-07 51.4 13.8 89 116-206 97-194 (201)
18 PF13661 2OG-FeII_Oxy_4: 2OG-F 97.1 0.00076 1.6E-08 49.6 4.3 40 119-160 15-66 (70)
19 PF13759 2OG-FeII_Oxy_5: Putat 97.0 0.0027 5.8E-08 49.5 6.8 87 118-206 3-98 (101)
20 PF13532 2OG-FeII_Oxy_2: 2OG-F 97.0 0.021 4.6E-07 48.6 12.6 154 33-208 1-193 (194)
21 COG3826 Uncharacterized protei 96.5 0.0063 1.4E-07 53.6 6.0 86 117-211 126-233 (236)
22 PRK15401 alpha-ketoglutarate-d 95.2 0.21 4.5E-06 44.8 10.2 156 28-208 14-210 (213)
23 COG3751 EGL-9 Predicted prolin 94.7 0.12 2.6E-06 47.4 7.4 92 116-214 137-242 (252)
24 PF03336 Pox_C4_C10: Poxvirus 94.3 0.11 2.4E-06 49.5 6.5 81 111-207 76-164 (339)
25 PLN03001 oxidoreductase, 2OG-F 94.1 0.12 2.6E-06 47.4 6.1 79 119-213 120-214 (262)
26 PLN02276 gibberellin 20-oxidas 94.1 0.17 3.6E-06 48.4 7.2 79 119-213 210-304 (361)
27 PLN02365 2-oxoglutarate-depend 93.9 0.16 3.4E-06 47.3 6.6 80 119-211 153-248 (300)
28 PLN02904 oxidoreductase 93.7 0.2 4.4E-06 47.8 7.0 80 118-213 211-306 (357)
29 PLN02947 oxidoreductase 93.5 0.24 5.3E-06 47.7 7.3 79 119-213 229-323 (374)
30 PLN02984 oxidoreductase, 2OG-F 93.2 0.29 6.4E-06 46.5 7.3 79 119-213 204-299 (341)
31 PLN00417 oxidoreductase, 2OG-F 93.2 0.28 6E-06 46.7 7.1 80 119-213 207-302 (348)
32 PLN02216 protein SRG1 92.8 0.36 7.9E-06 46.1 7.2 80 119-213 214-309 (357)
33 PLN02912 oxidoreductase, 2OG-F 92.6 0.32 7E-06 46.3 6.7 79 119-213 201-295 (348)
34 PLN02750 oxidoreductase, 2OG-F 92.6 0.31 6.8E-06 46.2 6.5 82 119-214 197-294 (345)
35 PLN02156 gibberellin 2-beta-di 92.4 0.32 6.9E-06 46.2 6.3 80 119-213 182-279 (335)
36 PLN02515 naringenin,2-oxogluta 92.3 0.36 7.8E-06 46.2 6.5 82 119-214 199-296 (358)
37 PLN02704 flavonol synthase 91.9 0.49 1.1E-05 44.7 6.8 79 119-213 203-297 (335)
38 PTZ00273 oxidase reductase; Pr 91.8 0.41 9E-06 44.7 6.2 79 119-213 181-276 (320)
39 PLN02485 oxidoreductase 91.8 0.28 6.1E-06 46.0 5.1 83 118-214 187-289 (329)
40 PLN03178 leucoanthocyanidin di 91.4 0.56 1.2E-05 44.8 6.8 79 119-213 215-309 (360)
41 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 91.4 0.33 7.2E-06 42.6 4.8 81 119-208 100-193 (195)
42 PLN02299 1-aminocyclopropane-1 91.3 0.63 1.4E-05 43.8 6.8 81 118-213 161-257 (321)
43 PLN02254 gibberellin 3-beta-di 91.2 0.47 1E-05 45.4 6.0 80 119-213 214-309 (358)
44 KOG3710 EGL-Nine (EGLN) protei 91.1 1.2 2.6E-05 40.8 8.1 90 116-217 144-244 (280)
45 PLN02403 aminocyclopropanecarb 90.7 0.87 1.9E-05 42.6 7.2 82 118-214 156-254 (303)
46 PLN03002 oxidoreductase, 2OG-F 90.5 0.85 1.8E-05 43.1 7.0 83 119-213 186-285 (332)
47 PLN02997 flavonol synthase 90.3 1 2.2E-05 42.6 7.2 80 119-214 187-282 (325)
48 PLN02639 oxidoreductase, 2OG-F 90.2 0.91 2E-05 42.9 6.9 80 119-213 194-289 (337)
49 PLN02758 oxidoreductase, 2OG-F 89.3 1.2 2.6E-05 42.6 7.0 81 119-213 215-311 (361)
50 PLN02393 leucoanthocyanidin di 89.1 1.4 3E-05 42.2 7.3 80 119-213 217-312 (362)
51 KOG3200 Uncharacterized conser 87.4 1.1 2.4E-05 39.4 5.0 97 29-138 9-109 (224)
52 KOG0143 Iron/ascorbate family 87.3 1.4 3.1E-05 41.6 6.1 81 119-213 180-276 (322)
53 TIGR00568 alkb DNA alkylation 86.8 1.9 4.1E-05 37.2 6.0 62 116-191 96-162 (169)
54 PF05118 Asp_Arg_Hydrox: Aspar 84.4 2.6 5.6E-05 35.8 5.7 77 114-208 79-157 (163)
55 COG5285 Protein involved in bi 82.6 7.1 0.00015 36.8 8.2 98 115-213 114-233 (299)
56 PHA02866 Hypothetical protein; 78.2 30 0.00065 32.9 10.7 149 31-207 5-164 (333)
57 KOG3889 Predicted gamma-butyro 75.3 5.8 0.00012 37.5 5.2 80 74-158 136-223 (371)
58 KOG3844 Predicted component of 75.1 38 0.00082 33.6 10.8 176 28-221 33-226 (476)
59 PHA02923 hypothetical protein; 72.2 11 0.00024 35.7 6.3 77 113-208 66-142 (315)
60 cd00250 CAS_like Clavaminic ac 71.4 7.7 0.00017 34.7 5.0 67 87-158 58-130 (262)
61 KOG4459 Membrane-associated pr 63.5 2.2 4.9E-05 42.3 -0.1 63 142-213 371-435 (471)
62 PRK13264 3-hydroxyanthranilate 61.2 1E+02 0.0022 27.1 9.7 125 81-237 6-131 (177)
63 TIGR02409 carnitine_bodg gamma 59.4 26 0.00055 33.4 6.3 30 129-158 186-221 (366)
64 KOG3959 2-Oxoglutarate- and ir 58.7 16 0.00035 33.8 4.5 100 21-137 61-174 (306)
65 PF10637 Ofd1_CTDD: Oxoglutara 54.1 32 0.00068 31.9 5.7 151 5-159 8-190 (266)
66 KOG3425 Uncharacterized conser 53.5 6.4 0.00014 32.6 1.0 30 197-234 21-50 (128)
67 TIGR02410 carnitine_TMLD trime 49.3 23 0.00049 33.8 4.1 79 74-156 126-211 (362)
68 PRK09943 DNA-binding transcrip 46.7 81 0.0018 26.8 6.8 23 177-199 148-170 (185)
69 PF02668 TauD: Taurine catabol 39.3 21 0.00046 30.9 2.1 32 127-158 94-131 (258)
70 TIGR00412 redox_disulf_2 small 38.6 12 0.00025 27.4 0.3 11 225-235 6-16 (76)
71 cd02967 mauD Methylamine utili 38.0 12 0.00027 28.4 0.3 10 227-236 31-40 (114)
72 cd03012 TlpA_like_DipZ_like Tl 37.8 13 0.00028 29.3 0.4 10 226-235 32-41 (126)
73 PF06822 DUF1235: Protein of u 37.1 80 0.0017 29.5 5.5 90 119-219 54-144 (266)
74 PF07350 DUF1479: Protein of u 36.2 44 0.00096 33.0 3.9 44 179-238 324-367 (416)
75 TIGR00411 redox_disulf_1 small 34.6 18 0.00039 25.7 0.7 13 226-238 8-20 (82)
76 TIGR02738 TrbB type-F conjugat 33.6 16 0.00034 30.8 0.3 11 226-236 59-69 (153)
77 PF08534 Redoxin: Redoxin; In 32.5 16 0.00036 29.1 0.3 11 227-237 38-49 (146)
78 PF13905 Thioredoxin_8: Thiore 32.3 16 0.00036 26.8 0.2 10 225-234 9-18 (95)
79 cd02956 ybbN ybbN protein fami 31.6 21 0.00046 26.3 0.7 13 226-238 21-33 (96)
80 PF15379 DUF4606: Domain of un 31.2 55 0.0012 26.3 3.0 17 225-241 30-46 (104)
81 cd03008 TryX_like_RdCVF Trypar 31.1 18 0.0004 30.3 0.4 11 226-236 34-44 (146)
82 TIGR03404 bicupin_oxalic bicup 30.2 2E+02 0.0042 27.8 7.2 72 118-206 70-141 (367)
83 PRK09553 tauD taurine dioxygen 30.2 3.4E+02 0.0074 24.6 8.6 28 131-158 95-128 (277)
84 cd03000 PDI_a_TMX3 PDIa family 28.6 22 0.00048 26.9 0.4 12 226-237 24-35 (104)
85 TIGR03037 anthran_nbaC 3-hydro 28.2 3.9E+02 0.0084 23.0 9.7 55 177-238 72-126 (159)
86 PHA02985 hypothetical protein; 28.1 2.1E+02 0.0045 26.8 6.6 89 119-220 61-150 (271)
87 COG0526 TrxA Thiol-disulfide i 28.0 22 0.00047 25.2 0.2 11 225-235 40-50 (127)
88 cd02993 PDI_a_APS_reductase PD 27.7 26 0.00055 27.0 0.6 13 226-238 30-42 (109)
89 cd03010 TlpA_like_DsbE TlpA-li 27.1 27 0.00059 27.2 0.7 10 227-236 35-44 (127)
90 cd03004 PDI_a_ERdj5_C PDIa fam 27.0 24 0.00051 26.5 0.3 10 226-235 28-37 (104)
91 cd02985 TRX_CDSP32 TRX family, 27.0 23 0.00051 27.0 0.3 10 226-235 24-33 (103)
92 cd03005 PDI_a_ERp46 PDIa famil 26.2 27 0.00058 25.8 0.4 10 227-236 26-35 (102)
93 COG3145 AlkB Alkylated DNA rep 25.9 1.5E+02 0.0032 26.4 5.1 58 117-190 108-172 (194)
94 PF14033 DUF4246: Protein of u 25.7 59 0.0013 32.8 2.9 43 174-216 434-482 (501)
95 PF11265 Med25_VWA: Mediator c 25.7 81 0.0018 28.7 3.5 71 83-155 25-107 (226)
96 KOG0907 Thioredoxin [Posttrans 25.6 26 0.00056 27.8 0.3 9 226-234 30-38 (106)
97 PF00578 AhpC-TSA: AhpC/TSA fa 25.4 46 0.00099 25.4 1.7 22 200-236 24-45 (124)
98 COG4340 Uncharacterized protei 25.2 2.4E+02 0.0051 25.4 6.2 86 116-210 121-214 (226)
99 PRK09381 trxA thioredoxin; Pro 24.9 27 0.00058 26.5 0.3 11 226-236 30-40 (109)
100 cd02994 PDI_a_TMX PDIa family, 24.8 32 0.00069 25.6 0.7 11 226-236 25-35 (101)
101 PHA02125 thioredoxin-like prot 24.8 28 0.0006 25.1 0.3 12 226-237 7-18 (75)
102 cd02970 PRX_like2 Peroxiredoxi 24.8 44 0.00095 26.3 1.5 9 227-235 34-42 (149)
103 cd03003 PDI_a_ERdj5_N PDIa fam 24.6 33 0.00072 25.6 0.7 10 226-235 27-36 (101)
104 PF09864 MliC: Membrane-bound 24.6 1.3E+02 0.0027 21.6 3.8 44 116-159 7-53 (72)
105 cd02951 SoxW SoxW family; SoxW 24.3 33 0.00072 26.8 0.7 11 226-236 23-33 (125)
106 cd02995 PDI_a_PDI_a'_C PDIa fa 24.1 33 0.00072 25.2 0.6 10 226-235 27-36 (104)
107 cd02948 TRX_NDPK TRX domain, T 24.0 29 0.00063 26.4 0.3 10 226-235 26-35 (102)
108 PF13098 Thioredoxin_2: Thiore 23.7 33 0.00073 25.9 0.6 12 227-238 15-26 (112)
109 TIGR02180 GRX_euk Glutaredoxin 23.7 34 0.00074 24.3 0.6 16 226-241 6-21 (84)
110 PHA02278 thioredoxin-like prot 23.4 30 0.00065 27.0 0.3 11 225-235 22-32 (103)
111 PF06110 DUF953: Eukaryotic pr 23.2 42 0.00091 27.4 1.1 8 227-234 36-43 (119)
112 cd02949 TRX_NTR TRX domain, no 23.0 35 0.00076 25.5 0.6 11 226-236 22-32 (97)
113 TIGR01295 PedC_BrcD bacterioci 23.0 31 0.00068 27.6 0.3 9 226-234 32-40 (122)
114 cd02973 TRX_GRX_like Thioredox 22.8 36 0.00078 23.4 0.6 11 226-236 8-18 (67)
115 PF08007 Cupin_4: Cupin superf 22.8 1.3E+02 0.0028 28.2 4.4 43 174-218 175-217 (319)
116 cd02997 PDI_a_PDIR PDIa family 22.4 32 0.0007 25.3 0.3 11 226-236 26-36 (104)
117 PF13899 Thioredoxin_7: Thiore 22.3 38 0.00083 24.6 0.6 12 227-238 27-38 (82)
118 TIGR02196 GlrX_YruB Glutaredox 22.1 39 0.00084 22.9 0.6 12 226-237 7-18 (74)
119 cd02953 DsbDgamma DsbD gamma f 21.9 31 0.00068 25.9 0.1 10 227-236 21-30 (104)
120 PRK13728 conjugal transfer pro 21.7 34 0.00074 29.9 0.3 10 226-235 78-87 (181)
121 TIGR02409 carnitine_bodg gamma 21.7 1.3E+02 0.0029 28.5 4.3 48 172-219 311-361 (366)
122 cd02999 PDI_a_ERp44_like PDIa 21.6 40 0.00086 25.8 0.6 11 226-236 27-37 (100)
123 cd00340 GSH_Peroxidase Glutath 21.4 35 0.00077 27.8 0.3 8 227-235 32-39 (152)
124 cd03002 PDI_a_MPD1_like PDI fa 21.3 35 0.00076 25.6 0.3 11 226-236 27-37 (109)
125 cd02964 TryX_like_family Trypa 21.1 43 0.00092 26.5 0.7 10 227-236 27-36 (132)
126 cd03001 PDI_a_P5 PDIa family, 21.0 41 0.00089 24.8 0.6 10 227-236 28-37 (103)
127 KOG3848 Extracellular protein 20.9 3.8E+02 0.0082 26.9 7.2 60 93-158 187-250 (516)
128 cd02961 PDI_a_family Protein D 20.6 73 0.0016 22.6 1.9 10 227-236 25-34 (101)
129 PF04378 RsmJ: Ribosomal RNA s 20.4 2E+02 0.0044 26.3 5.1 87 6-93 130-226 (245)
130 PF00085 Thioredoxin: Thioredo 20.0 38 0.00083 24.7 0.2 10 226-235 26-35 (103)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-47 Score=358.90 Aligned_cols=255 Identities=38% Similarity=0.605 Sum_probs=246.3
Q ss_pred CCCCCCCChhHHHHcccccHHHHHhhhcccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccccccCCCCccceeec
Q 024926 1 MHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLD 80 (260)
Q Consensus 1 ~~~~~~~~p~f~~~i~~~~~~~~~~~~~e~~p~Vy~fpvft~~fC~~LI~e~e~f~~w~~~s~~~~~rpn~mn~ygvvld 80 (260)
+||+.+|.|+|..+...++++.|++++.|+.|++|++|+|++.||++++.++|+++.|+.+++++++|||+|++|+++++
T Consensus 122 ~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~~P~~~~~li~~~k 201 (415)
T KOG1971|consen 122 LDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVITRPNTLRNLIVLNK 201 (415)
T ss_pred CCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceeccCChhHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--chhHHHHHHHHHhhhhhhh---------------------hhCCCcCCCCCCccceeEEEEcCC-CCCCccccccC
Q 024926 81 DF--GLETMLDKLMNDFIRPISK---------------------VFFPEVGGSTLDSHHGFVVEYGMD-RDVELGFHVDD 136 (260)
Q Consensus 81 d~--gl~~~~~~l~~~~l~Pl~~---------------------~lfp~~~~~~Lds~~~FvvrY~~~-~d~~l~~H~D~ 136 (260)
++ ++..+..+|.++|+.||++ .++|++.+..||+|++|++.|..+ .|.++++|+|+
T Consensus 202 ~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~~~~Dpdm~~~~~~ 281 (415)
T KOG1971|consen 202 EFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSEDNRDPDMGFCVDA 281 (415)
T ss_pred hccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccCcCCCCccccccch
Confidence 99 9999999999999999999 999999999999999999999665 99999999999
Q ss_pred CeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCCCcCccccCccc-eeEEEeeccchhh
Q 024926 137 SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGS-RVNLLVWCRSSVF 215 (260)
Q Consensus 137 S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~pVTsG~-Ry~Lv~w~rss~~ 215 (260)
+++|+|+||++.|+||+|+|.+..|+.|.+. .++.++|+++|.+|+|+||+|.|+|++.+.++|+ |-+++.|+.++.+
T Consensus 282 ~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~~~~nv~~~~~~~~c 360 (415)
T KOG1971|consen 282 REVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQPCPNVYWFPISSLC 360 (415)
T ss_pred hhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCCCCCceeeehhHHHH
Confidence 9999999999999999999999999999876 6788999999999999999999999999999999 9999999999999
Q ss_pred hhhHhhhhhcccccchhhhhhhHHHHHHHHHHHHHHHhhhc
Q 024926 216 RELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIG 256 (260)
Q Consensus 216 R~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~ 256 (260)
|+|.+|+.+|+.||+.|...+++++..+..+||...++..+
T Consensus 361 ~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~ 401 (415)
T KOG1971|consen 361 DELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVG 401 (415)
T ss_pred HHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhh
Confidence 99999999999999999999999999999999999888654
No 2
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.90 E-value=3e-23 Score=185.54 Aligned_cols=160 Identities=23% Similarity=0.356 Sum_probs=117.2
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcccccccCC-ccccccCCCCccceeecccchhHHHHHHHHHhhh--hhhhhhCCCcCC
Q 024926 34 IYTFE-MLQPRFCEMLLSEVENFERWVHDTR-FRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIR--PISKVFFPEVGG 109 (260)
Q Consensus 34 Vy~fp-vft~~fC~~LI~e~e~f~~w~~~s~-~~~~rpn~mn~ygvvldd~gl~~~~~~l~~~~l~--Pl~~~lfp~~~~ 109 (260)
++.+| +||+++|+++|+.+++- .|..|.. .....+...||..+..++. +...+..++...+. |+ |. .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l----~~---s 72 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPL----FF---S 72 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCch----hh---h
Confidence 45665 99999999999999984 4653221 1222345678888887766 65444444444553 33 21 1
Q ss_pred CCC--CccceeEEEEcCCCCCCccccccCC-------------eeeEEEeeC--CceeccceEEeccccccccccccccc
Q 024926 110 STL--DSHHGFVVEYGMDRDVELGFHVDDS-------------EVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSE 172 (260)
Q Consensus 110 ~~L--ds~~~FvvrY~~~~d~~l~~H~D~S-------------~~TlnV~L~--~dfeGG~l~F~~~~~~~~v~~~~~~~ 172 (260)
..+ ..+...+.||.+++ +|++|+|++ .+|++++|| ++|+||||.|......
T Consensus 73 a~lp~~i~~~~f~rY~~G~--~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~---------- 140 (226)
T PRK05467 73 AALPRKIHPPLFNRYEGGM--SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGE---------- 140 (226)
T ss_pred hccccccccceEEEECCCC--ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCc----------
Confidence 122 12234589999886 999999974 589999999 5799999999864321
Q ss_pred ccceecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhh
Q 024926 173 EILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRE 217 (260)
Q Consensus 173 ~~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~ 217 (260)
..+++++|++|+||+..+|+|.|||+|+||+++.|++|. +|+
T Consensus 141 --~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S~-v~~ 182 (226)
T PRK05467 141 --HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQSL-VRD 182 (226)
T ss_pred --EEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHHH-cCC
Confidence 246899999999999999999999999999999999998 665
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.85 E-value=8.3e-21 Score=161.44 Aligned_cols=162 Identities=25% Similarity=0.365 Sum_probs=108.1
Q ss_pred CeEEEec-CCCHHHHHHHHHHHHhcccccccCCcccccc----CCCCccceeecccchhHHHHHHHHHhhhhhhhhhCCC
Q 024926 32 PGIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRIMRP----NTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPE 106 (260)
Q Consensus 32 p~Vy~fp-vft~~fC~~LI~e~e~f~~w~~~s~~~~~rp----n~mn~ygvvldd~gl~~~~~~l~~~~l~Pl~~~lfp~ 106 (260)
|.|+.++ +|++++|++||++++.... ........+.+ ..++.....+++-.-+...+. +.+.+..+ ++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~-l~~~i~~~----~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIER-IRQRLADF----LGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeecceecCCCCCCHHHHH-HHHHHHHH----HCC
Confidence 7899996 9999999999999998652 11111111111 112222333433211122222 22233333 221
Q ss_pred cCCCCCCccceeEEEEcCCCCCCccccccCC--------eeeEEEeeCCceeccceEEecccccccccccccccccceec
Q 024926 107 VGGSTLDSHHGFVVEYGMDRDVELGFHVDDS--------EVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYS 178 (260)
Q Consensus 107 ~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S--------~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~ 178 (260)
...........++++|.+++ ++.+|+|.+ .+|++++||++++||+|.|...... ....+.
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g~--~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~----------~~~~v~ 142 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPGG--HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLM----------VCATVK 142 (178)
T ss_pred CchhhccCcceEEEEECCCC--cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCc----------cceEEe
Confidence 11112234456799999875 999999965 6999999999999999999986541 123568
Q ss_pred CCCceEEEecC---CCCcCccccCccceeEEEeecc
Q 024926 179 HVPGYAVLHRG---RHRHGARATTSGSRVNLLVWCR 211 (260)
Q Consensus 179 ~~~G~avlh~g---~~~H~~~pVTsG~Ry~Lv~w~r 211 (260)
|++|.+|+|+. +.+|++.||++|.||+++.|+|
T Consensus 143 P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 143 PKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEEC
Confidence 99999999997 5899999999999999999986
No 4
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.65 E-value=1.3e-15 Score=142.01 Aligned_cols=176 Identities=19% Similarity=0.273 Sum_probs=113.6
Q ss_pred CCeEEEec-CCCHHHHHHHHHHHHhcc-cc-ccc--CCccccccCCCCccceeecccchhHHHHHHHHHhhhhhhhhhCC
Q 024926 31 IPGIYTFE-MLQPRFCEMLLSEVENFE-RW-VHD--TRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 105 (260)
Q Consensus 31 ~p~Vy~fp-vft~~fC~~LI~e~e~f~-~w-~~~--s~~~~~rpn~mn~ygvvldd~gl~~~~~~l~~~~l~Pl~~~lfp 105 (260)
.|.||.++ +||+++|+.||+..+.-. .. +.+ ++... ..+.+..++..|++-. ++.+..+ ++.|.-++ ..|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~-~s~~RTS~~~~l~~~~-dpvv~~I-~~Ria~~t--~lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSV-MSEVRTSSGMFLDKRQ-DPVVSRI-EERIAAWT--FLP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccc-cCCCEEecceeecCCC-CHHHHHH-HHHHHHHh--CCC
Confidence 68999996 999999999999887532 21 100 01000 1122344555554322 2333333 33443332 122
Q ss_pred CcCCCCCCccceeEEEEcCCCCCCccccccC------------CeeeEEEeeCCceeccceEEeccccccccccc----c
Q 024926 106 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDD------------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTE----T 169 (260)
Q Consensus 106 ~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~------------S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~----~ 169 (260)
.. ..-...|++|++++ ++.+|+|- ...|+.++||+..+||+|.|+........... .
T Consensus 128 -~~----~~E~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~ 200 (310)
T PLN00052 128 -EE----NAENIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSE 200 (310)
T ss_pred -cc----cCcceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhh
Confidence 11 11134699999987 79999992 24899999999999999999975311000000 0
Q ss_pred cccccceecCCCceEEEecCC---------CCcCccccCccceeEEEeeccchhhhhh
Q 024926 170 QSEEILDYSHVPGYAVLHRGR---------HRHGARATTSGSRVNLLVWCRSSVFREL 218 (260)
Q Consensus 170 ~~~~~~~~~~~~G~avlh~g~---------~~H~~~pVTsG~Ry~Lv~w~rss~~R~~ 218 (260)
-.+.-+.++|++|.||+|..- .+|+|.||++|++|++..|++...|...
T Consensus 201 c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~~ 258 (310)
T PLN00052 201 CAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHP 258 (310)
T ss_pred hhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccCC
Confidence 001235689999999999984 5999999999999999999999888643
No 5
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.48 E-value=2.5e-13 Score=118.09 Aligned_cols=164 Identities=20% Similarity=0.324 Sum_probs=106.5
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcccccccCCccc-cccCCCCccceeecccchhHHHHHHHHHhhhhhhhhhCC-CcCC
Q 024926 33 GIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRI-MRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP-EVGG 109 (260)
Q Consensus 33 ~Vy~fp-vft~~fC~~LI~e~e~f~~w~~~s~~~~-~rpn~mn~ygvvldd~gl~~~~~~l~~~~l~Pl~~~lfp-~~~~ 109 (260)
..+-+| ||+++.|.++-+.++.. .|+.|.--.. .-+...||-.+.-+. .++..+..++-+-+.-.. ..|. .+..
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A-~w~dGrat~g~q~a~vk~n~qlp~~s-~l~~~vg~~il~al~~~p-lff~aALp~ 79 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQA-EWVDGRATQGPQGAQVKNNLQLPQDS-ALARELGNEILQALTAHP-LFFAAALPR 79 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhc-cccccccccCcchhhhhccccCCccc-HHHHHHHHHHHHHHHhch-hHHHhhccc
Confidence 455665 99999999987777764 4665442211 113345554444332 233333333322221111 1111 0111
Q ss_pred CCCCccceeEEEEcCCCCCCccccccCC--------------eeeEEEeeC--CceeccceEEecccccccccccccccc
Q 024926 110 STLDSHHGFVVEYGMDRDVELGFHVDDS--------------EVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSEE 173 (260)
Q Consensus 110 ~~Lds~~~FvvrY~~~~d~~l~~H~D~S--------------~~TlnV~L~--~dfeGG~l~F~~~~~~~~v~~~~~~~~ 173 (260)
..+.. .+-+|..+. .|++|+|+. ++++|..|+ +||+||+|...+..+..
T Consensus 80 t~~~P---~Fn~Y~eg~--~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h---------- 144 (229)
T COG3128 80 TCLPP---LFNRYQEGD--FFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGNH---------- 144 (229)
T ss_pred ccCCc---hhhhccCCC--cccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccce----------
Confidence 11222 256788776 799999953 467777786 69999999999876642
Q ss_pred cceecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhh
Q 024926 174 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRE 217 (260)
Q Consensus 174 ~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~ 217 (260)
.++.+.|+.|++|+..+|++.|||+|.|+..+.|.+|. +|+
T Consensus 145 --~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl-ir~ 185 (229)
T COG3128 145 --RVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL-IRD 185 (229)
T ss_pred --EEeccCCCEEEcccccceeccccccCceEEEeeehHHH-hhh
Confidence 34678899999999999999999999999999999987 776
No 6
>PHA02813 hypothetical protein; Provisional
Probab=99.40 E-value=1.7e-12 Score=121.92 Aligned_cols=154 Identities=13% Similarity=0.188 Sum_probs=106.3
Q ss_pred CeEEEecCCCHHH----HHHHHHHHHhcc--ccccc------CCccccccCCCCccceeecccchhHHHHHHHHHhhhhh
Q 024926 32 PGIYTFEMLQPRF----CEMLLSEVENFE--RWVHD------TRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPI 99 (260)
Q Consensus 32 p~Vy~fpvft~~f----C~~LI~e~e~f~--~w~~~------s~~~~~rpn~mn~ygvvldd~gl~~~~~~l~~~~l~Pl 99 (260)
.++....+|+.+. =+.|+.+++ +. .|... .+...+.++.+||-+|+++++ +.+|+.+.. +|.+-
T Consensus 5 ~~~l~~~~F~~~~f~~~k~~l~~~i~-~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~--~~L~erIr~-~Lp~~ 80 (354)
T PHA02813 5 DGIIKVKTFNDDYFNNVKKIIMDMIK-YKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL--DDIFKVIRK-KLLLS 80 (354)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHh-ccccCccccceeccccCceEEccccccceEEEEcCH--HHHHHHHHH-hhHHH
Confidence 4667778888873 334444444 11 23221 111356677899999999988 777776554 33221
Q ss_pred hhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccC--------CeeeEEEeeCCceeccceEEecccccccccccccc
Q 024926 100 SKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQS 171 (260)
Q Consensus 100 ~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~--------S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~ 171 (260)
.. -++-+..-+++.+.+ +++|.+|+ .|.+|+|. |.+||.++||+.++||+|.|.-....
T Consensus 81 l~-~~~lv~~V~vnerir-fyrY~kGq--~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t--------- 147 (354)
T PHA02813 81 FE-FPQKISDIILDNTIT-LIKYEKGD--FFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT--------- 147 (354)
T ss_pred hc-CCccceeEEEcceEE-EEEECCCc--ccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc---------
Confidence 10 011111235677765 68999987 89999985 56899999999999999999953221
Q ss_pred cccceecCCCceEEEecCCCCcCccccCccceeEEEe
Q 024926 172 EEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLV 208 (260)
Q Consensus 172 ~~~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~ 208 (260)
+-.+|.+|||.++..|+|.+|++|++|+++.
T Consensus 148 ------sI~~g~dlLFdh~l~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 148 ------IFSTKNDVLFDKTLNHSSDIITDGEKNIALI 178 (354)
T ss_pred ------eEeecceEEEecccccCCcEeccCeEEEEEE
Confidence 1238999999999999999999999999865
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.24 E-value=1.3e-11 Score=95.36 Aligned_cols=86 Identities=31% Similarity=0.447 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCccccccC-----CeeeEEEeeC-Cc--eeccceEEeccc--ccccccccccccccceecCCCceEEEec
Q 024926 119 VVEYGMDRDVELGFHVDD-----SEVTLNVCLG-RE--FSGGELFFRGVR--CDKHVNTETQSEEILDYSHVPGYAVLHR 188 (260)
Q Consensus 119 vvrY~~~~d~~l~~H~D~-----S~~TlnV~L~-~d--feGG~l~F~~~~--~~~~v~~~~~~~~~~~~~~~~G~avlh~ 188 (260)
+.+|.++. .+.+|.|. ..+|+.++|| .+ ++||+|.|.... ..... .-+.....|.+|++|+|+
T Consensus 3 ~~~y~~G~--~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~-----~~~~~~~~p~~g~~v~F~ 75 (100)
T PF13640_consen 3 LNRYPPGG--FFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSR-----EVEDFDIVPKPGRLVIFP 75 (100)
T ss_dssp EEEEETTE--EEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCE-----EEGGGSEE-BTTEEEEEE
T ss_pred EEEECcCC--EEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcce-----EEEeccccCCCCEEEEEe
Confidence 56787665 99999999 3599999999 33 799999999753 11100 000011229999999999
Q ss_pred C-CCCcCcccc-CccceeEEEeecc
Q 024926 189 G-RHRHGARAT-TSGSRVNLLVWCR 211 (260)
Q Consensus 189 g-~~~H~~~pV-TsG~Ry~Lv~w~r 211 (260)
+ ..+|++.|| ..|+|++|+.|++
T Consensus 76 ~~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 76 SDNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp SCTCEEEEEEE-EESEEEEEEEEEE
T ss_pred CCCCeecCcccCCCCCEEEEEEEEC
Confidence 9 899999999 9999999999974
No 8
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.01 E-value=9.2e-10 Score=105.18 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCCCccceeEEEEcCCCCCCccccccC--------CeeeEEEeeCCceeccceEEecccccccccccccccccceecCCC
Q 024926 110 STLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVP 181 (260)
Q Consensus 110 ~~Lds~~~FvvrY~~~~d~~l~~H~D~--------S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (260)
-+++.+.+ +++|.+|+ .|.+|.|. |.+||.++||+.++||+|.|.-... ..+.|++
T Consensus 99 V~lnerir-fyrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~~~~-------------~sI~pks 162 (418)
T PHA02869 99 VTVENTVT-LIMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNN-------------TSVKLKT 162 (418)
T ss_pred EEEcceEE-EEEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEeCCC-------------ceEecCC
Confidence 36777765 68999987 89999996 4699999999999999999996221 1357889
Q ss_pred ceEEEecCCCCcCccccCccceeEEEe
Q 024926 182 GYAVLHRGRHRHGARATTSGSRVNLLV 208 (260)
Q Consensus 182 G~avlh~g~~~H~~~pVTsG~Ry~Lv~ 208 (260)
| |||.++..|+|.+|++|++|++..
T Consensus 163 g--LLFdh~l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 163 D--HLFDKTIEHESITVESGRKCVALF 187 (418)
T ss_pred C--eEeccccccCCcEeecCeEEEEEE
Confidence 9 999999999999999999999853
No 9
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=98.75 E-value=8.3e-08 Score=89.14 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=102.6
Q ss_pred CCeEEEec-CCCHHHHHHHHHHHHh-cccccc-cCCccccccCC--CCccceeecccchhHHHHHHHHHhhhhhhhhhCC
Q 024926 31 IPGIYTFE-MLQPRFCEMLLSEVEN-FERWVH-DTRFRIMRPNT--MNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 105 (260)
Q Consensus 31 ~p~Vy~fp-vft~~fC~~LI~e~e~-f~~w~~-~s~~~~~rpn~--mn~ygvvldd~gl~~~~~~l~~~~l~Pl~~~lfp 105 (260)
.|.|+.++ ++++++|+.||+.... .+.+.- ..+....-... +.-.+.-+.+ +-. -....+++.+.-++. +|
T Consensus 96 ~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~-~~~-~~~~~i~~ri~~~T~--l~ 171 (289)
T KOG1591|consen 96 DPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPD-GAS-PVVSRIEQRIADLTG--LP 171 (289)
T ss_pred CCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecC-CCC-HHHHHHHHHHHhccC--CC
Confidence 47888885 9999999999997763 443211 01110000000 1112333444 222 222333334433321 12
Q ss_pred CcCCCCCCccceeEEEEcCCCCCCccccccCCe----------------eeEEEeeCCceeccceEEecccccccccccc
Q 024926 106 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE----------------VTLNVCLGREFSGGELFFRGVRCDKHVNTET 169 (260)
Q Consensus 106 ~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S~----------------~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~ 169 (260)
--.+ -.-.|++|+.|+ ++.+|+|-.. =|+.++|++.=+||+|.|+.....
T Consensus 172 ~e~~-----E~lqVlnYg~Gg--~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~------- 237 (289)
T KOG1591|consen 172 VENG-----ESLQVLNYGLGG--HYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGMK------- 237 (289)
T ss_pred cccC-----ccceEEEecCCc--cccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCCc-------
Confidence 1111 122589999987 8999988431 388899999999999999987642
Q ss_pred cccccceecCCCceEEEecC---------CCCcCccccCccceeEEEeeccchh
Q 024926 170 QSEEILDYSHVPGYAVLHRG---------RHRHGARATTSGSRVNLLVWCRSSV 214 (260)
Q Consensus 170 ~~~~~~~~~~~~G~avlh~g---------~~~H~~~pVTsG~Ry~Lv~w~rss~ 214 (260)
..+.|++|.|+++-. +-+|+|.||..|.||+-..|+|-..
T Consensus 238 -----~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~ 286 (289)
T KOG1591|consen 238 -----PAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKN 286 (289)
T ss_pred -----ccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecc
Confidence 135799999998742 2799999999999999999998643
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.59 E-value=6.5e-08 Score=74.37 Aligned_cols=79 Identities=25% Similarity=0.266 Sum_probs=57.4
Q ss_pred eeEEEEc-CCCCCCccccccC--CeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC---
Q 024926 117 GFVVEYG-MDRDVELGFHVDD--SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 190 (260)
Q Consensus 117 ~FvvrY~-~~~d~~l~~H~D~--S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~--- 190 (260)
..+.+|. ++.+..+++|.|. +.+|++++ .++|+|+|..... ...+++.++..++..|.
T Consensus 4 ~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~------------~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 4 LRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGE------------WVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp EEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTE------------EEE----TTCEEEEEBHHHH
T ss_pred EEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheecccccc------------ccCccCccceeeeeceeeee
Confidence 3578999 6677799999999 99999998 7899999996542 23446777788888887
Q ss_pred ---------CCcCccccCccceeEEEeecc
Q 024926 191 ---------HRHGARATTSGSRVNLLVWCR 211 (260)
Q Consensus 191 ---------~~H~~~pVTsG~Ry~Lv~w~r 211 (260)
.+|++.+++.|.|++++.|++
T Consensus 68 ~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 68 ILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp HHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 899999999999999999986
No 11
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1e-05 Score=78.00 Aligned_cols=70 Identities=23% Similarity=0.511 Sum_probs=55.6
Q ss_pred hhcccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccccccCC---CCccceeecccchhHHHHHHHHHhhh
Q 024926 26 IMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNT---MNKFGAVLDDFGLETMLDKLMNDFIR 97 (260)
Q Consensus 26 ~~~e~~p~Vy~fpvft~~fC~~LI~e~e~f~~w~~~s~~~~~rpn~---mn~ygvvldd~gl~~~~~~l~~~~l~ 97 (260)
++.++||+||++|.+ .+|++|++++++|++|++|..-..+...+ --+..|.+.++|++..|..++..|++
T Consensus 343 ~~~~~~~nv~~~~~~--~~c~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 343 IVGQPCPNVYWFPIS--SLCDELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred CCCCCCCceeeehhH--HHHHHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 567899999999988 99999999999999999988665432222 12345668889999999998887763
No 12
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=5.5e-05 Score=65.06 Aligned_cols=84 Identities=24% Similarity=0.359 Sum_probs=62.9
Q ss_pred eEEEEcCCCCCCccccccC-Ce----eeEEEeeC---CceeccceEEecccccccccccccccccceecCCCceEEEecC
Q 024926 118 FVVEYGMDRDVELGFHVDD-SE----VTLNVCLG---REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRG 189 (260)
Q Consensus 118 FvvrY~~~~d~~l~~H~D~-S~----~TlnV~L~---~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g 189 (260)
...+|+++. +-..|.|- .+ +-+.|-|| +||+|||...-+.+..- ..+...+++..|+|+||.-
T Consensus 65 lllrY~~gd--yn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~-------QSR~~V~~L~qGda~if~t 135 (173)
T PF09859_consen 65 LLLRYGPGD--YNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPRM-------QSRAMVLPLRQGDALIFAT 135 (173)
T ss_pred hhheeCCCC--ccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCCc-------cCccccCCcCCCCEEEEec
Confidence 367898876 78889983 32 44555665 69999999998765421 2244456899999999974
Q ss_pred C--------------CCcCccccCccceeEEEeec
Q 024926 190 R--------------HRHGARATTSGSRVNLLVWC 210 (260)
Q Consensus 190 ~--------------~~H~~~pVTsG~Ry~Lv~w~ 210 (260)
+ ++|++-+|.+|+|+.|-+=.
T Consensus 136 ~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliF 170 (173)
T PF09859_consen 136 NHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIF 170 (173)
T ss_pred CCCCcCCCccceecccccccccccccceEEEEEEe
Confidence 3 78999999999999985543
No 13
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.78 E-value=4.3e-05 Score=65.89 Aligned_cols=72 Identities=24% Similarity=0.471 Sum_probs=62.0
Q ss_pred CCCCccccccC----CeeeEEEeeCC-ceeccceEEec-----ccccccccccccccccceecCCCceEEEecCC-CCcC
Q 024926 126 RDVELGFHVDD----SEVTLNVCLGR-EFSGGELFFRG-----VRCDKHVNTETQSEEILDYSHVPGYAVLHRGR-HRHG 194 (260)
Q Consensus 126 ~d~~l~~H~D~----S~~TlnV~L~~-dfeGG~l~F~~-----~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~-~~H~ 194 (260)
.+.....|+|. ..+|+.+.|+. +|+||-+.+.+ .+. .+...+|++|++.|+ .+|+
T Consensus 83 ~nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~--------------~~~~~~GtVl~~~~~~~~Hg 148 (171)
T PF12851_consen 83 SNRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGV--------------AFAYQPGTVLIFCAKRELHG 148 (171)
T ss_pred eecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCE--------------EEecCCCcEEEEcccceeee
Confidence 34578899997 66899999985 49999999998 543 246899999999999 9999
Q ss_pred ccccCc-----cceeEEEeecc
Q 024926 195 ARATTS-----GSRVNLLVWCR 211 (260)
Q Consensus 195 ~~pVTs-----G~Ry~Lv~w~r 211 (260)
+.||.+ |+|+.||.+.|
T Consensus 149 vtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 149 VTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCcccCCCCCCCeEEEEEEEeE
Confidence 999998 99999999876
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.63 E-value=0.0013 Score=55.02 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=79.5
Q ss_pred eEEEe-cCCCHHHHHHHHHHHHhc--ccccccCCccccccCCCC-ccceeecccchh-HHHHHHHHH-hhhhhhhhhCCC
Q 024926 33 GIYTF-EMLQPRFCEMLLSEVENF--ERWVHDTRFRIMRPNTMN-KFGAVLDDFGLE-TMLDKLMND-FIRPISKVFFPE 106 (260)
Q Consensus 33 ~Vy~f-pvft~~fC~~LI~e~e~f--~~w~~~s~~~~~rpn~mn-~ygvvldd~gl~-~~~~~l~~~-~l~Pl~~~lfp~ 106 (260)
|...+ .+|+++.|++|.++++.. .....+.+.......... .+...+ ... ..+..++.. .+..+.+.++..
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQL---AKSPNFYDLFLHPPRILDLVRALLGS 81 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCG---CCCHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccc---ccchhhHHHHhhHHHHHHHHHHhhCC
Confidence 44555 599999999999999985 221111111111111111 111111 111 233444444 555555555531
Q ss_pred cCCCCCCcccee--EEEEcCCCCCC-ccccccC---------CeeeEEEeeCC-ceeccceEEecccccc-------ccc
Q 024926 107 VGGSTLDSHHGF--VVEYGMDRDVE-LGFHVDD---------SEVTLNVCLGR-EFSGGELFFRGVRCDK-------HVN 166 (260)
Q Consensus 107 ~~~~~Lds~~~F--vvrY~~~~d~~-l~~H~D~---------S~~TlnV~L~~-dfeGG~l~F~~~~~~~-------~v~ 166 (260)
-.......+..+ +++ .++.+.. ..||.|. ..+|+.|+|.+ .=+.|.+.+....-.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~ 160 (211)
T PF05721_consen 82 DVFVQNWLQSMYQDIVK-PPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFP 160 (211)
T ss_dssp SEEEE--EEEEEEEEEE--TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCC
T ss_pred cchhhhhhHHHHHhhhh-ccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEeecCCcCCCccccccccc
Confidence 110000011111 122 2222233 5999993 24788899974 2455667765321110 000
Q ss_pred ccc-----------cccccceecCCCceEEEecCCCCcCccc-cCcccee
Q 024926 167 TET-----------QSEEILDYSHVPGYAVLHRGRHRHGARA-TTSGSRV 204 (260)
Q Consensus 167 ~~~-----------~~~~~~~~~~~~G~avlh~g~~~H~~~p-VTsG~Ry 204 (260)
... ..........++|++|+|.+..+|++.+ .|.+.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 161 EEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSGPNTSDDPRR 210 (211)
T ss_dssp CCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE-B-SSSTEE
T ss_pred ccccccccccccccccCceEEeecCCCeEEEEcCCccccCCCCCCcCcCC
Confidence 000 0134456678999999999999999999 4455554
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.52 E-value=0.004 Score=57.76 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=31.8
Q ss_pred cceecCCCceEEEecCCCCcCccccCcc--ceeEEEe-eccch
Q 024926 174 ILDYSHVPGYAVLHRGRHRHGARATTSG--SRVNLLV-WCRSS 213 (260)
Q Consensus 174 ~~~~~~~~G~avlh~g~~~H~~~pVTsG--~Ry~Lv~-w~rss 213 (260)
.+....++|++++|.+..+|++-|-++. .|..+++ |+.+.
T Consensus 208 ~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~ 250 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSF 250 (288)
T ss_pred eeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCC
Confidence 3456779999999999999999999884 4777755 66554
No 16
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.50 E-value=0.0041 Score=57.05 Aligned_cols=179 Identities=15% Similarity=0.192 Sum_probs=91.3
Q ss_pred CeEEEe-cCCCHHHHHHHHHHHHhcccc--cccCCccccccCCCCccceeecccchhHHHHHHH-HHhhhhhhhhhCC-C
Q 024926 32 PGIYTF-EMLQPRFCEMLLSEVENFERW--VHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLM-NDFIRPISKVFFP-E 106 (260)
Q Consensus 32 p~Vy~f-pvft~~fC~~LI~e~e~f~~w--~~~s~~~~~rpn~mn~ygvvldd~gl~~~~~~l~-~~~l~Pl~~~lfp-~ 106 (260)
.|...+ .+|++++|+.|.++++..... .......+. ....++.+-+++.......+.+++ ...|..+++.|+. +
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~ 106 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAIT-EPGSNAVRSIFEVHVLSPILARLVRDPRVANAARQILGSD 106 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHhcccccCCCccee-cCCCCceEEEecccccCHHHHHHHcChHHHHHHHHHcCCC
Confidence 355555 599999999999999876431 000000000 011122222333333334333333 2334444444442 1
Q ss_pred cCCCCCCccceeEEEEcCCCCCCccccccCC------------eeeEEEeeCC-ceeccceEEecccccccccc-cccc-
Q 024926 107 VGGSTLDSHHGFVVEYGMDRDVELGFHVDDS------------EVTLNVCLGR-EFSGGELFFRGVRCDKHVNT-ETQS- 171 (260)
Q Consensus 107 ~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S------------~~TlnV~L~~-dfeGG~l~F~~~~~~~~v~~-~~~~- 171 (260)
+ -+ .+..++.+.. .....+.||.|.+ .+|+-|+|.+ .=+-|.|.|....-...+.. ...+
T Consensus 107 ~---~l-~~~~l~~kp~-~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~~ 181 (277)
T TIGR02408 107 V---YV-HQSRINMKPG-FKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETPR 181 (277)
T ss_pred e---EE-EeeeeeecCC-CCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccccc
Confidence 1 11 1122334432 2334778999942 3788889975 33447777754221100000 0000
Q ss_pred --------------------------cccceecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhh
Q 024926 172 --------------------------EEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRE 217 (260)
Q Consensus 172 --------------------------~~~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~ 217 (260)
........++|++|+|.+..+|++.+-++..+.-.+.-.+++ +.+
T Consensus 182 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~-~~~ 252 (277)
T TIGR02408 182 DNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNS-VEN 252 (277)
T ss_pred hhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEec-CCC
Confidence 001234569999999999999999998877744444444443 434
No 17
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.14 E-value=0.016 Score=51.42 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=58.7
Q ss_pred ceeEEEEcCCCCCCccccc-cCCeeeEEEeeCCceeccceEEeccccccccccc-------ccccccceecCCCceEEEe
Q 024926 116 HGFVVEYGMDRDVELGFHV-DDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTE-------TQSEEILDYSHVPGYAVLH 187 (260)
Q Consensus 116 ~~FvvrY~~~~d~~l~~H~-D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~-------~~~~~~~~~~~~~G~avlh 187 (260)
...++.+.+++ .-..|. -+|-+|=..+|.-.=.+|.+.|..-+....+..+ ........+.|++|+.|||
T Consensus 97 ~~W~ni~~~Gg--~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 97 KAWVNILPQGG--THSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred eEeEEEcCCCC--ccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 56788888775 444443 3677899999974445788888754332101000 0011223468999999999
Q ss_pred cCCCCcCccccCc-cceeEE
Q 024926 188 RGRHRHGARATTS-GSRVNL 206 (260)
Q Consensus 188 ~g~~~H~~~pVTs-G~Ry~L 206 (260)
|+.++|++.|-.+ +.|..+
T Consensus 175 PS~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 175 ESWLRHEVPPNESEEERISV 194 (201)
T ss_pred CCCCceecCCCCCCCCEEEE
Confidence 9999999999987 456554
No 18
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=97.10 E-value=0.00076 Score=49.60 Aligned_cols=40 Identities=38% Similarity=0.627 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCccccccCC--------eeeEEEeeC----CceeccceEEeccc
Q 024926 119 VVEYGMDRDVELGFHVDDS--------EVTLNVCLG----REFSGGELFFRGVR 160 (260)
Q Consensus 119 vvrY~~~~d~~l~~H~D~S--------~~TlnV~L~----~dfeGG~l~F~~~~ 160 (260)
.++|..++ .+++|+|.. .+|+.|+|| ++|+||++.|....
T Consensus 15 ~~~~~~g~--~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 15 FYRYRRGD--FFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred EEEcCCCC--EeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 45555554 999999964 389999999 79999999999754
No 19
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=96.99 E-value=0.0027 Score=49.51 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=45.4
Q ss_pred eEEEEcCCCCCCccccc-cCCeeeEEEeeCCceeccceEEecccccccccc-------cccccccceecCCCceEEEecC
Q 024926 118 FVVEYGMDRDVELGFHV-DDSEVTLNVCLGREFSGGELFFRGVRCDKHVNT-------ETQSEEILDYSHVPGYAVLHRG 189 (260)
Q Consensus 118 FvvrY~~~~d~~l~~H~-D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~-------~~~~~~~~~~~~~~G~avlh~g 189 (260)
..+.|+.+. ...+|. .+|.++-..+|.-+=+.|.+.|...+....... .........+.++.|+.||||+
T Consensus 3 W~ni~~~g~--~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 3 WANIYRKGG--YNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEE-TT----EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eEEEeCCCC--ccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 456677665 334443 466889999996333778899875432111110 0112345577999999999999
Q ss_pred CCCcCccccCcc-ceeEE
Q 024926 190 RHRHGARATTSG-SRVNL 206 (260)
Q Consensus 190 ~~~H~~~pVTsG-~Ry~L 206 (260)
.+.|++.|-.+. .|+.+
T Consensus 81 ~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 81 WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TSEEEE----SSS-EEEE
T ss_pred CCEEeccCcCCCCCEEEE
Confidence 999999999986 56655
No 20
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.95 E-value=0.021 Score=48.64 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=76.1
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcccccccCCcccccc--CCC------------C--ccc-e-eecccchh---HHHHH
Q 024926 33 GIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRIMRP--NTM------------N--KFG-A-VLDDFGLE---TMLDK 90 (260)
Q Consensus 33 ~Vy~fp-vft~~fC~~LI~e~e~f~~w~~~s~~~~~rp--n~m------------n--~yg-v-vldd~gl~---~~~~~ 90 (260)
|+|.+| +|++++.++|++++.....|...... ..+. ..+ . +|. . ..+...+. .++..
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~ 79 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYP-MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSR 79 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC-CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc-CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHH
Confidence 466665 99999999999999964444322111 0100 000 0 111 1 22333332 34444
Q ss_pred HHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccCCe-----eeEEEeeCCceeccceEEecccccccc
Q 024926 91 LMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE-----VTLNVCLGREFSGGELFFRGVRCDKHV 165 (260)
Q Consensus 91 l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S~-----~TlnV~L~~dfeGG~l~F~~~~~~~~v 165 (260)
+++....-.. ..+.+ ..| ...+-.|..+. .+++|.|+.+ .-+.|+|+.. ..+.|....
T Consensus 80 ~~~~~~~~~~--~~~~~---~~n--~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG~~---~~~~f~~~~----- 142 (194)
T PF13532_consen 80 LLERLVEATG--IPPGW---RPN--QCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLGSS---RVFRFRNKS----- 142 (194)
T ss_dssp HHHHHHHHHT---SHSS-----S--EEEEEEESSTT---EEEE---TTC-CCSEEEEEEEES----EEEEEEECG-----
T ss_pred HHHHHHHHhc--cccCC---CCC--EEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEccC---ceEEEeecc-----
Confidence 4443332111 11111 222 34566898876 9999999874 4566677432 122343211
Q ss_pred cccccccccceecCCCceEEEecCC---CCcCccccCcc---------ceeEEEe
Q 024926 166 NTETQSEEILDYSHVPGYAVLHRGR---HRHGARATTSG---------SRVNLLV 208 (260)
Q Consensus 166 ~~~~~~~~~~~~~~~~G~avlh~g~---~~H~~~pVTsG---------~Ry~Lv~ 208 (260)
..++.+.+...+|+.++..|. ..|+..++..+ .|.+|..
T Consensus 143 ----~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislTf 193 (194)
T PF13532_consen 143 ----DDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLTF 193 (194)
T ss_dssp ----GTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEEE
T ss_pred ----CCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEEe
Confidence 133566778899999999998 44999999885 6888763
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.0063 Score=53.60 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=60.6
Q ss_pred eeEEEEcCCCCCCccccccC---Ceee--EEEeeC---CceeccceEEecccccccccccccccccceecCCCceEEEec
Q 024926 117 GFVVEYGMDRDVELGFHVDD---SEVT--LNVCLG---REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR 188 (260)
Q Consensus 117 ~FvvrY~~~~d~~l~~H~D~---S~~T--lnV~L~---~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~ 188 (260)
....+|+++. .=..|.|= --|. +-|.|+ .||+|||...-+.+..- ..+.-.++.+.|++++|.
T Consensus 126 pLlLqYgpgD--~NcLHQDLYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR~-------QSr~~vvpLrqG~g~vFa 196 (236)
T COG3826 126 PLLLQYGPGD--YNCLHQDLYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPRM-------QSRPTVVPLRQGDGVVFA 196 (236)
T ss_pred ceeEEecCCc--cchhhhhhhhceeeeeeEEEeccCCCCcccCceEEEEeccccc-------ccCCceeeccCCceEEEE
Confidence 3478999985 56678882 2233 334443 69999999988765421 223345688999999985
Q ss_pred C--------------CCCcCccccCccceeEEEeecc
Q 024926 189 G--------------RHRHGARATTSGSRVNLLVWCR 211 (260)
Q Consensus 189 g--------------~~~H~~~pVTsG~Ry~Lv~w~r 211 (260)
- .++||+-.+-||+|+.+-+=.+
T Consensus 197 vr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFH 233 (236)
T COG3826 197 VRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFH 233 (236)
T ss_pred eecCcccCccCccccchhcchhhhhcccceeeEEEee
Confidence 2 2899999999999999855443
No 22
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=95.19 E-value=0.21 Score=44.83 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=87.6
Q ss_pred cccCCeEEEecCCCHHHHHHHHHHHHhcc---cccccCCccc---cccCCC-----------Ccccee-e---cccchh-
Q 024926 28 AEPIPGIYTFEMLQPRFCEMLLSEVENFE---RWVHDTRFRI---MRPNTM-----------NKFGAV-L---DDFGLE- 85 (260)
Q Consensus 28 ~e~~p~Vy~fpvft~~fC~~LI~e~e~f~---~w~~~s~~~~---~rpn~m-----------n~ygvv-l---dd~gl~- 85 (260)
++..||.+.+|-|..+..++|++++.... .|.+ -..+. |.+..+ +.|+-. . .-....
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEAVAAQAPFRH-MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHHHHhcCCccc-eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 45678999999889999999999988722 2211 00111 111000 122221 1 111221
Q ss_pred --HHHHHHHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccCCe-----eeEEEeeCC--ceeccceEE
Q 024926 86 --TMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE-----VTLNVCLGR--EFSGGELFF 156 (260)
Q Consensus 86 --~~~~~l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S~-----~TlnV~L~~--dfeGG~l~F 156 (260)
..+..|.++...- .-++ .+...-..|-.|.++. .+++|.|+.| .-++|+||. .|. |
T Consensus 93 ~P~~l~~L~~~~~~~---~~~~-----~~~p~a~LvN~Y~~G~--~mg~H~D~~E~~~~~pI~SvSLG~~~~F~-----~ 157 (213)
T PRK15401 93 MPASFLALAQRAAAA---AGFP-----GFQPDACLINRYAPGA--KLSLHQDKDERDFRAPIVSVSLGLPAVFQ-----F 157 (213)
T ss_pred chHHHHHHHHHHHHH---cCCC-----CCCCCEEEEEeccCcC--ccccccCCCcccCCCCEEEEeCCCCeEEE-----e
Confidence 2444444432210 1111 1222335677899885 9999999644 345667764 232 1
Q ss_pred ecccccccccccccccccceecCCCceEEEecCC---CCcCccccCcc-------ceeEEEe
Q 024926 157 RGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---HRHGARATTSG-------SRVNLLV 208 (260)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---~~H~~~pVTsG-------~Ry~Lv~ 208 (260)
.+... .+....+....|+.||..|. ..|++.++..| .|+||..
T Consensus 158 ~~~~~---------~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTF 210 (213)
T PRK15401 158 GGLKR---------SDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTF 210 (213)
T ss_pred cccCC---------CCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEe
Confidence 11110 11233567899999999988 77999988765 5999864
No 23
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.12 Score=47.45 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=70.2
Q ss_pred ceeEEEEcCCCCCCccccccCC------eeeEEEeeC---Cceeccce-EEecccccccccccccccccceecCCCceEE
Q 024926 116 HGFVVEYGMDRDVELGFHVDDS------EVTLNVCLG---REFSGGEL-FFRGVRCDKHVNTETQSEEILDYSHVPGYAV 185 (260)
Q Consensus 116 ~~FvvrY~~~~d~~l~~H~D~S------~~TlnV~L~---~dfeGG~l-~F~~~~~~~~v~~~~~~~~~~~~~~~~G~av 185 (260)
...+..|.++- +|..|-|+. .+|...+++ +.+-||+| .|...... .+.++...+..|.=++.+
T Consensus 137 e~~~~~y~~G~--~l~~H~D~~~~~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~-----~~~~~~~~ti~P~fn~lv 209 (252)
T COG3751 137 EGQITVYNPGC--FLLKHDDNGRDKDIRLATYVYYLTREWKPEYGGELRLFHSLQKN-----NTAADSFKTIAPVFNSLV 209 (252)
T ss_pred eeeeeEecCCc--eeEeecccCCCccceEEEEEeccCCCCCcCCCCceeeccccccc-----ccccccccccCCCCceEE
Confidence 33466688876 899999865 478888887 57899999 77754321 123455667789999999
Q ss_pred EecCCCCcCccccCc----cceeEEEeeccchh
Q 024926 186 LHRGRHRHGARATTS----GSRVNLLVWCRSSV 214 (260)
Q Consensus 186 lh~g~~~H~~~pVTs----G~Ry~Lv~w~rss~ 214 (260)
+|-..-.|+..+|-. +.|..+-+|.|...
T Consensus 210 ~F~s~~~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 210 FFKSRPSHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred EEEecCCccceeccccccccceEEEeeEEecCC
Confidence 999998888887765 88999999998763
No 24
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=94.33 E-value=0.11 Score=49.47 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCCccceeEEEEcCCCCCCccccccCC--------eeeEEEeeCCceeccceEEecccccccccccccccccceecCCCc
Q 024926 111 TLDSHHGFVVEYGMDRDVELGFHVDDS--------EVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG 182 (260)
Q Consensus 111 ~Lds~~~FvvrY~~~~d~~l~~H~D~S--------~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G 182 (260)
.++.+-. +++|..|. +|..|.|.. +++|.++|+..=+||+|.+.=..+.. .. -.++
T Consensus 76 ~V~n~iT-fikY~kGd--~f~~~~d~~~~~~~n~~~y~LvLyL~~~~~GGktkiyi~~~~~---------tv----I~~~ 139 (339)
T PF03336_consen 76 IVDNTIT-FIKYEKGD--FFDNHRDFIKRDSKNCLEYHLVLYLNNPENGGKTKIYIDPNDN---------TV----ISTS 139 (339)
T ss_pred EEcceEE-EEEEccCc--chhhhcccceeccCCceEEEEEEEEeccCCCceEEEEECCCCc---------ee----eecc
Confidence 4456655 57898876 899999843 68999999999999999987322211 11 2558
Q ss_pred eEEEecCCCCcCccccCccceeEEE
Q 024926 183 YAVLHRGRHRHGARATTSGSRVNLL 207 (260)
Q Consensus 183 ~avlh~g~~~H~~~pVTsG~Ry~Lv 207 (260)
.-+||.-++.|+..+|++|++++.+
T Consensus 140 ~DvLFdKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 140 EDVLFDKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred ccEEEeccccccceEeccCeEEEEE
Confidence 8899999999999999999999854
No 25
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=94.11 E-value=0.12 Score=47.42 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=58.7
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCC---
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH--- 191 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~--- 191 (260)
+.+|-+- .+..++.|+|.+.+||... ++ .|||.... .++++.+++.+|..||.-|.+
T Consensus 120 l~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~--v~GLqV~~------------~g~Wi~V~p~p~a~vVNiGD~l~~ 183 (262)
T PLN03001 120 VSYYPPCPQPELTLGLQSHSDFGAITLLIQ--DD--VEGLQLLK------------DAEWLMVPPISDAILIIIADQTEI 183 (262)
T ss_pred eecCCCCCCcccccCCcCCcCCCeeEEEEe--CC--CCceEEee------------CCeEEECCCCCCcEEEEccHHHHH
Confidence 5667552 3446889999999999755 33 35677642 235778899999999998873
Q ss_pred ---------CcCccccCccceeEEEeeccch
Q 024926 192 ---------RHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 192 ---------~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
+|++.......||.+..|+...
T Consensus 184 ~tng~~~S~~HRVv~~~~~~R~Sia~F~~p~ 214 (262)
T PLN03001 184 ITNGNYKSAQHRAIANANKARLSVATFHDPA 214 (262)
T ss_pred HhCCccccccceEEcCCCCCEEEEEEEEcCC
Confidence 4999866667799999999854
No 26
>PLN02276 gibberellin 20-oxidase
Probab=94.05 E-value=0.17 Score=48.41 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- ....++.|+|-+.+||... + +.|||.... ..+++.+++.+|..||.-|.
T Consensus 210 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d--~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 273 (361)
T PLN02276 210 CNYYPPCQEPELTLGTGPHCDPTSLTILHQ--D--QVGGLQVFV------------DNKWRSVRPRPGALVVNIGDTFMA 273 (361)
T ss_pred eEeCCCCCCcccccCCccccCCceeEEEEe--c--CCCceEEEE------------CCEEEEcCCCCCeEEEEcHHHHHH
Confidence 5677542 3346889999999999875 2 356777652 23677889999999999975
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-....||.+..|+.-+
T Consensus 274 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~ 304 (361)
T PLN02276 274 LSNGRYKSCLHRAVVNSERERRSLAFFLCPK 304 (361)
T ss_pred HhCCccccccceeecCCCCCEEEEEEEecCC
Confidence 78998766678899999999843
No 27
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=93.93 E-value=0.16 Score=47.27 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=58.6
Q ss_pred EEEEcC----CCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~----~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+ .....++.|+|.+.+||... ++ +.|||...... ..+++.+++.+|..||.-|.
T Consensus 153 ~~~YP~~p~~~~~~g~~~HtD~g~lTlL~q--d~-~~~GLqV~~~~----------~g~Wi~V~p~pga~vVNiGD~l~~ 219 (300)
T PLN02365 153 INKYNFTPETVGSSGVQIHTDSGFLTILQD--DE-NVGGLEVMDPS----------SGEFVPVDPLPGTLLVNLGDVATA 219 (300)
T ss_pred eeecCCCCCccccccccCccCCCceEEEec--CC-CcCceEEEECC----------CCeEEecCCCCCeEEEEhhHHHHH
Confidence 678843 33456889999999998854 21 24678765310 23677889999999999886
Q ss_pred --------CCcCccccCccceeEEEeecc
Q 024926 191 --------HRHGARATTSGSRVNLLVWCR 211 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~r 211 (260)
.+|++..-....||.+..|+.
T Consensus 220 ~TNG~~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 220 WSNGRLCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred HhCCceecccceeEcCCCCCEEEEEEEec
Confidence 689887655567999999975
No 28
>PLN02904 oxidoreductase
Probab=93.68 E-value=0.2 Score=47.84 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=60.5
Q ss_pred eEEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC---
Q 024926 118 FVVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 190 (260)
Q Consensus 118 FvvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~--- 190 (260)
.+.+|-+- ....+++|.|-+.+||... + +|||..... ..+++.+++.+|..||.-|.
T Consensus 211 rl~~YPp~p~~~~~~g~~~HtD~g~lTlL~q--d---~~GLQV~~~-----------~g~Wi~V~p~pgalVVNiGD~Le 274 (357)
T PLN02904 211 AVNCYPACPEPEIALGMPPHSDFGSLTILLQ--S---SQGLQIMDC-----------NKNWVCVPYIEGALIVQLGDQVE 274 (357)
T ss_pred EeeecCCCCCcccccCCcCccCCCceEEEec--C---CCeeeEEeC-----------CCCEEECCCCCCeEEEEccHHHH
Confidence 36678652 2446789999999999875 3 257887532 23577889999999999985
Q ss_pred ---------CCcCccccCccceeEEEeeccch
Q 024926 191 ---------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 ---------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-....||.+..|+.-+
T Consensus 275 ~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~ 306 (357)
T PLN02904 275 VMSNGIYKSVVHRVTVNKDYKRLSFASLHSLP 306 (357)
T ss_pred HHhCCeeeccCCcccCCCCCCEEEEEEeecCC
Confidence 68999765667899999998754
No 29
>PLN02947 oxidoreductase
Probab=93.50 E-value=0.24 Score=47.66 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=59.7
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+..|-+- ..-.+++|+|-+.+||... ++ .|||.... .++++.+++.+|..||.-|.
T Consensus 229 ln~YPp~p~~~~~~G~~~HTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wi~V~p~pga~VVNvGD~Lq~ 292 (374)
T PLN02947 229 VNCYPACPEPELTLGMPPHSDYGFLTLLLQ--DE--VEGLQIMH------------AGRWVTVEPIPGSFVVNVGDHLEI 292 (374)
T ss_pred eecCCCCCCcccccCCCCccCCCceEEEEe--cC--CCCeeEeE------------CCEEEeCCCCCCeEEEEeCceeee
Confidence 4567653 3345789999999999876 33 46777653 23577889999999999987
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-..+.||.+..|+.-+
T Consensus 293 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 323 (374)
T PLN02947 293 FSNGRYKSVLHRVRVNSTKPRISVASLHSLP 323 (374)
T ss_pred eeCCEEeccccccccCCCCCEEEEEEEecCC
Confidence 67888665667899999999854
No 30
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=93.21 E-value=0.29 Score=46.52 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- ..-.++.|+|-+.+||... ++ .|||.... ..+++.+++.+|..||.-|.
T Consensus 204 l~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wv~V~p~pgalVVNiGD~Le~ 267 (341)
T PLN02984 204 VYRYPQCSNEAEAPGMEVHTDSSVISILNQ--DE--VGGLEVMK------------DGEWFNVKPIANTLVVNLGDMMQV 267 (341)
T ss_pred EEeCCCCCCcccccCccCccCCCceEEEEe--CC--CCCeeEee------------CCceEECCCCCCeEEEECChhhhh
Confidence 6778653 2346889999999999876 32 35677642 23677889999999999987
Q ss_pred --------CCcCcc-ccCccceeEEEeeccch
Q 024926 191 --------HRHGAR-ATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~-pVTsG~Ry~Lv~w~rss 213 (260)
..|++. +-....||.++.|++..
T Consensus 268 wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~P~ 299 (341)
T PLN02984 268 ISDDEYKSVLHRVGKRNKKKERYSICYFVFPE 299 (341)
T ss_pred hcCCeeeCCCCccccCCCCCCeEEEEEEecCC
Confidence 459994 44466799999999865
No 31
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=93.20 E-value=0.28 Score=46.74 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=59.9
Q ss_pred EEEEcC----CCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~----~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+ +.+..+++|+|-+.+||...-+ + .|||.... ..+++.+++.+|..||.-|.
T Consensus 207 l~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~-~--v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~Le~ 271 (348)
T PLN00417 207 FNMYPPCPRPDKVIGVKPHADGSAFTLLLPDK-D--VEGLQFLK------------DGKWYKAPIVPDTILINVGDQMEI 271 (348)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEEecC-C--CCceeEeE------------CCeEEECCCCCCcEEEEcChHHHH
Confidence 677855 2335688999999999875422 2 35677642 23577889999999999886
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-..+.||.+..|+.-+
T Consensus 272 ~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 272 MSNGIYKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred HhCCeecccceEEecCCCCCEEEEEEEecCC
Confidence 57999876677899999999864
No 32
>PLN02216 protein SRG1
Probab=92.77 E-value=0.36 Score=46.08 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=60.1
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- ....++.|.|-+.+||...-++ -|||.... .++++.+++.+|..||.-|.
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~---v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 278 (357)
T PLN02216 214 MNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNE---VEGLQIKK------------DGKWVSVKPLPNALVVNVGDILEI 278 (357)
T ss_pred EeecCCCCCcccccCccCcccCceEEEEEecCC---CCceeEEE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 5678552 3346889999999999775433 35676642 23677889999999999987
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-..+.||.+..|+..+
T Consensus 279 ~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~ 309 (357)
T PLN02216 279 ITNGTYRSIEHRGVVNSEKERLSVATFHNTG 309 (357)
T ss_pred hcCCeeeccCceeecCCCCCEEEEEEEecCC
Confidence 45998766677899999999875
No 33
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=92.65 E-value=0.32 Score=46.25 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=60.6
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- .+..+++|+|-+.+||... ++ .|||.... ..+++.+++.+|..||.-|.
T Consensus 201 l~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 264 (348)
T PLN02912 201 INYYPPCPQPELTYGLPGHKDANLITVLLQ--DE--VSGLQVFK------------DGKWIAVNPIPNTFIVNLGDQMQV 264 (348)
T ss_pred eeecCCCCChhhcCCcCCCcCCCceEEEEE--CC--CCceEEEE------------CCcEEECCCcCCeEEEEcCHHHHH
Confidence 5678663 2446889999999999865 32 46777752 13577889999999999886
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-..+.||.+..|+.-.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 265 ISNDKYKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred HhCCEEEcccccccCCCCCCEEEEEEEecCC
Confidence 67998765677899999999865
No 34
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=92.62 E-value=0.31 Score=46.17 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=61.6
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... +..+++.+++.+|..||.-|.
T Consensus 197 ~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d--~v~GLQV~~~----------~~g~Wi~V~p~pg~~vVNiGD~L~~ 262 (345)
T PLN02750 197 FNHYPPCPAPHLALGVGRHKDGGALTVLAQ--D--DVGGLQISRR----------SDGEWIPVKPIPDAFIINIGNCMQV 262 (345)
T ss_pred EEecCCCCCcccccCcCCCCCCCeEEEEec--C--CCCceEEeec----------CCCeEEEccCCCCeEEEEhHHHHHH
Confidence 5678652 3446889999999999754 2 2467877421 124677889999999999875
Q ss_pred --------CCcCccccCccceeEEEeeccchh
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSSV 214 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss~ 214 (260)
.+|++..-....||.++.|+....
T Consensus 263 ~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~ 294 (345)
T PLN02750 263 WTNDLYWSAEHRVVVNSQKERFSIPFFFFPSH 294 (345)
T ss_pred HhCCeeecccceeccCCCCCEEEEEEeecCCC
Confidence 789998666678999999998763
No 35
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=92.40 E-value=0.32 Score=46.18 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=60.4
Q ss_pred EEEEcCCC------CCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC--
Q 024926 119 VVEYGMDR------DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR-- 190 (260)
Q Consensus 119 vvrY~~~~------d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~-- 190 (260)
+.+|-+-. ...++.|+|-+.+||... + +.|||.... +..+++.+.+.+|..||.-|.
T Consensus 182 l~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q--d--~v~GLQV~~-----------~~g~Wi~Vpp~pga~VVNiGD~l 246 (335)
T PLN02156 182 MNHYPEKEETPEKVEIGFGEHTDPQLISLLRS--N--DTAGLQICV-----------KDGTWVDVPPDHSSFFVLVGDTL 246 (335)
T ss_pred EEeCCCCCCCccccccCCCCccCCCceEEEEe--C--CCCceEEEe-----------CCCCEEEccCCCCcEEEEhHHHH
Confidence 57886632 245788999999999875 2 246777642 123677889999999999876
Q ss_pred ----------CCcCccccCccceeEEEeeccch
Q 024926 191 ----------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 ----------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
..|++..-....||++..|+.-.
T Consensus 247 ~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 247 QVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred HHHhCCeeeccceeeecCCCCCEEEEEEeecCC
Confidence 68999866677799999999754
No 36
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=92.26 E-value=0.36 Score=46.19 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=61.1
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- ....++.|+|.+.+||... ++ .|||...... .++++.+++.+|..||.-|.
T Consensus 199 l~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q--d~--v~GLQV~~~~----------~~~Wi~Vpp~pgalVVNiGD~L~~ 264 (358)
T PLN02515 199 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ--DQ--VGGLQATRDG----------GKTWITVQPVEGAFVVNLGDHGHY 264 (358)
T ss_pred EeecCCCCChhhccCCCCCCCCCeEEEEec--CC--CCceEEEECC----------CCeEEECCCCCCeEEEEccHHHHH
Confidence 5667652 2346889999999999875 22 4678775311 12577889999999999885
Q ss_pred --------CCcCccccCccceeEEEeeccchh
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSSV 214 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss~ 214 (260)
.+|++..-..+.||+++.|+.-..
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~ 296 (358)
T PLN02515 265 LSNGRFKNADHQAVVNSNCSRLSIATFQNPAP 296 (358)
T ss_pred HhCCeeeeecceEECCCCCCEEEEEEEecCCC
Confidence 679987666788999999998753
No 37
>PLN02704 flavonol synthase
Probab=91.88 E-value=0.49 Score=44.71 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=59.3
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- .+-.++.|+|-+.+||... ++ .|||.... ..+++.+++.+|..||.-|.
T Consensus 203 l~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNvGD~L~~ 266 (335)
T PLN02704 203 INYYPPCPRPDLALGVVAHTDMSAITILVP--NE--VQGLQVFR------------DDHWFDVKYIPNALVIHIGDQIEI 266 (335)
T ss_pred hhcCCCCCCcccccCccCccCCcceEEEec--CC--CCceeEeE------------CCEEEeCCCCCCeEEEEechHHHH
Confidence 3567652 2345789999999999876 33 55777642 23577889999999999986
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..--...||.++.|+.-.
T Consensus 267 ~TNg~~kSt~HRVv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 267 LSNGKYKSVLHRTTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred HhCCeeecccceeecCCCCCeEEEEEEecCC
Confidence 67998754456799999999865
No 38
>PTZ00273 oxidase reductase; Provisional
Probab=91.82 E-value=0.41 Score=44.71 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=58.7
Q ss_pred EEEEcCCC-----CCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC---
Q 024926 119 VVEYGMDR-----DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 190 (260)
Q Consensus 119 vvrY~~~~-----d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~--- 190 (260)
+.+|-+.. +..+++|+|-+.+||... ++ .|||..... ..+++.+++.+|..||.-|.
T Consensus 181 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~--~~GLqV~~~-----------~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 181 MKHYPALPQTKKGRTVCGEHTDYGIITLLYQ--DS--VGGLQVRNL-----------SGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred eeecCCCCCccccCcccccccCCCeEEEEec--CC--CCceEEECC-----------CCCEEeCCCCCCeEEEEHHHHHH
Confidence 67786532 335789999999999864 32 467876531 23567789999999999874
Q ss_pred ---------CCcCccccCccceeEEEeeccch
Q 024926 191 ---------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 ---------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++.. ....||.++.|++-.
T Consensus 246 ~~TnG~~kSt~HRVv~-~~~~R~Si~~F~~p~ 276 (320)
T PTZ00273 246 MWSNGRYRSTPHRVVN-TGVERYSMPFFCEPN 276 (320)
T ss_pred HHHCCeeeCCCccccC-CCCCeEEEEEEEcCC
Confidence 6899973 356899999999976
No 39
>PLN02485 oxidoreductase
Probab=91.77 E-value=0.28 Score=46.04 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=60.4
Q ss_pred eEEEEcCC--------CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecC
Q 024926 118 FVVEYGMD--------RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRG 189 (260)
Q Consensus 118 FvvrY~~~--------~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g 189 (260)
-+.+|-+- .+..+++|+|-+.+||... ++ +-|||..... ..+++.+++.+|..||.-|
T Consensus 187 rl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~q--d~-~~~GLqV~~~-----------~g~Wi~V~p~pg~~vVNiG 252 (329)
T PLN02485 187 RIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQ--DD-DITALQVRNL-----------SGEWIWAIPIPGTFVCNIG 252 (329)
T ss_pred EEEeCCCCccccCCcccCcccccccCCCeEEEEec--cC-CCCeeeEEcC-----------CCcEEECCCCCCcEEEEhH
Confidence 36778653 2345789999999999653 21 2367776531 2356788999999999988
Q ss_pred C------------CCcCccccCccceeEEEeeccchh
Q 024926 190 R------------HRHGARATTSGSRVNLLVWCRSSV 214 (260)
Q Consensus 190 ~------------~~H~~~pVTsG~Ry~Lv~w~rss~ 214 (260)
. .+|++..-....||.++.|++...
T Consensus 253 D~L~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~ 289 (329)
T PLN02485 253 DMLKIWSNGVYQSTLHRVINNSPKYRVCVAFFYETNF 289 (329)
T ss_pred HHHHHHHCCEeeCCCceecCCCCCCeEEEEEEecCCC
Confidence 5 569998766667999999998753
No 40
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=91.44 E-value=0.56 Score=44.78 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=59.3
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- .+..+++|+|-+.+||... ++ .|||.... ..+++.+++.+|..||.-|.
T Consensus 215 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~L~~ 278 (360)
T PLN03178 215 INYYPRCPQPDLALGVEAHTDVSALTFILH--NM--VPGLQVLY------------EGKWVTAKCVPDSIVVHIGDTLEI 278 (360)
T ss_pred eeccCCCCCCccccCcCCccCCCceEEEee--CC--CCceeEeE------------CCEEEEcCCCCCeEEEEccHHHHH
Confidence 4678652 3456889999999999864 33 46777652 23577889999999999986
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-..+.||.+..|+.-.
T Consensus 279 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 279 LSNGRYKSILHRGLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred HhCCccccccceeecCCCCCeEEEEEEecCC
Confidence 67997544456799999999975
No 41
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=91.40 E-value=0.33 Score=42.59 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=50.2
Q ss_pred EEEEcCCCCC-----CccccccCCeeeEEEeeC-CceeccceEEecccccccccccccccccceecCCCceEEEec-CCC
Q 024926 119 VVEYGMDRDV-----ELGFHVDDSEVTLNVCLG-REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR-GRH 191 (260)
Q Consensus 119 vvrY~~~~d~-----~l~~H~D~S~~TlnV~L~-~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~-g~~ 191 (260)
-+|+.+..+. -=+.|.|+-++++...++ ..=+||++........+ -...--..+|+.++.. .+.
T Consensus 100 q~Ri~a~~~~~g~ptPEGiH~DG~d~v~~~li~r~Ni~GG~s~i~~~~~~~---------~~~~~l~~p~d~l~~~D~~~ 170 (195)
T PF10014_consen 100 QIRIIATPDEPGEPTPEGIHRDGVDFVFIHLINRHNIEGGESQIYDNDKEI---------LFFFTLLEPGDTLLVDDRRV 170 (195)
T ss_dssp EEEEETTTS--B--STTSSB--SSSEEEEEEEEEESEEE--EEEEETTSSE---------EEEE---STTEEEEEETTTE
T ss_pred EEEEEEecCccCCcCCCCccCCCCCEEEEEEEcCCCccCceEEEEeCCCCc---------ceEEEecCCCCEEEEeCCcc
Confidence 4666664432 346899999999888887 56899999986543221 1112245889998888 779
Q ss_pred CcCccccCc------cceeEEEe
Q 024926 192 RHGARATTS------GSRVNLLV 208 (260)
Q Consensus 192 ~H~~~pVTs------G~Ry~Lv~ 208 (260)
.|++.||+. |.|-+||+
T Consensus 171 ~H~vtpI~~~~~~~~g~RDvlvi 193 (195)
T PF10014_consen 171 WHYVTPIRPVDPSRPGYRDVLVI 193 (195)
T ss_dssp EEEE--EEES-TT---EEEEEEE
T ss_pred eECCCceecCCCCCcEEEEEEEE
Confidence 999999974 77888876
No 42
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=91.26 E-value=0.63 Score=43.83 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=58.9
Q ss_pred eEEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC---
Q 024926 118 FVVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 190 (260)
Q Consensus 118 FvvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~--- 190 (260)
-+.+|-+- ....+++|+|.+.+||...-+ + .|||.... ..+++.+++.+|..||.-|.
T Consensus 161 Rl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~-~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~l~ 225 (321)
T PLN02299 161 KVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDD-K--VSGLQLLK------------DGEWVDVPPMRHSIVVNLGDQLE 225 (321)
T ss_pred eeEecCCCCCcccccCccCccCCCeEEEEEecC-C--CCCcCccc------------CCeEEECCCCCCeEEEEeCHHHH
Confidence 36788652 233577999999999975322 2 34565431 23577889999999999886
Q ss_pred ---------CCcCccccCccceeEEEeeccch
Q 024926 191 ---------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 ---------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-..+.||++..|+.-.
T Consensus 226 ~~Tng~~kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 226 VITNGKYKSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred HHhCCceecccceeecCCCCCEEEEEEEecCC
Confidence 57888765677899999999854
No 43
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=91.21 E-value=0.47 Score=45.44 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=59.9
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- ....+++|+|-+.+||... ++ .|||..... .++++.+++.+|..||.-|.
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q--d~--v~GLQV~~~-----------~~~Wi~V~p~pgalVVNiGD~lq~ 278 (358)
T PLN02254 214 LNSYPVCPDPDRAMGLAPHTDSSLLTILYQ--SN--TSGLQVFRE-----------GVGWVTVPPVPGSLVVNVGDLLHI 278 (358)
T ss_pred EecCCCCCCcccccCcCCccCCCcEEEEec--CC--CCCceEECC-----------CCEEEEcccCCCCEEEEhHHHHHH
Confidence 5678652 3446899999999999885 33 356776521 12577889999999999985
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-....||.+..|+.-.
T Consensus 279 ~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~ 309 (358)
T PLN02254 279 LSNGRFPSVLHRAVVNKTRHRISVAYFYGPP 309 (358)
T ss_pred HhCCeeccccceeecCCCCCEEEEEEEecCC
Confidence 78999655556799999999854
No 44
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=91.13 E-value=1.2 Score=40.75 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=67.1
Q ss_pred ceeEEEEcCCCCCCccccccCC-----eeeEEEeeCCc----eeccceEEecccccccccccccccccceecCCCceEEE
Q 024926 116 HGFVVEYGMDRDVELGFHVDDS-----EVTLNVCLGRE----FSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVL 186 (260)
Q Consensus 116 ~~FvvrY~~~~d~~l~~H~D~S-----~~TlnV~L~~d----feGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avl 186 (260)
.+-|.+|-.+ ..++-.|+||- .+|.--+||+. -.||.|........ ...+..|.-+..|+
T Consensus 144 kAMVAcYPGN-GtgYVrHVDNP~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~----------~~adieP~fdrLlf 212 (280)
T KOG3710|consen 144 KAMVACYPGN-GTGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGILRIFPEGST----------TFADIEPKFDRLLF 212 (280)
T ss_pred eEEEEEecCC-CceeeEeccCCCCCceEEEEEEEcccCcceeeccceeEeccCCCC----------cccccCcCCCeEEE
Confidence 5668999654 45677788863 59999999864 45888876643221 23356899999999
Q ss_pred ecCC--CCcCccccCccceeEEEeeccchhhhh
Q 024926 187 HRGR--HRHGARATTSGSRVNLLVWCRSSVFRE 217 (260)
Q Consensus 187 h~g~--~~H~~~pVTsG~Ry~Lv~w~rss~~R~ 217 (260)
|-+. ..|+++|... +||.+.+|.....=|.
T Consensus 213 fwSdrrnPhev~Pa~~-tryaitvwyfda~era 244 (280)
T KOG3710|consen 213 FWSDRRNPHEVQPAYA-TRYAITVWYFDAKERA 244 (280)
T ss_pred EEecCCCccccccccc-cceEEEEEEeccccch
Confidence 9887 5699999987 5899999998776664
No 45
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=90.67 E-value=0.87 Score=42.59 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=58.7
Q ss_pred eEEEEcCCC----CCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCc-eEEEecCC--
Q 024926 118 FVVEYGMDR----DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG-YAVLHRGR-- 190 (260)
Q Consensus 118 FvvrY~~~~----d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G-~avlh~g~-- 190 (260)
.+.+|.+-. ...+++|+|.+.+||...-+ + -|||.... ..+++.+++.+| ..||.-|.
T Consensus 156 rl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~-~--v~GLqV~~------------~g~Wi~V~p~p~~~lvVNvGD~L 220 (303)
T PLN02403 156 KVAKYPECPRPELVRGLREHTDAGGIILLLQDD-Q--VPGLEFLK------------DGKWVPIPPSKNNTIFVNTGDQL 220 (303)
T ss_pred eeEcCCCCCCcccccCccCccCCCeEEEEEecC-C--CCceEecc------------CCeEEECCCCCCCEEEEEehHHH
Confidence 377886632 23578999999999876543 2 34576531 235677888884 78888775
Q ss_pred ----------CCcCccccCccceeEEEeeccchh
Q 024926 191 ----------HRHGARATTSGSRVNLLVWCRSSV 214 (260)
Q Consensus 191 ----------~~H~~~pVTsG~Ry~Lv~w~rss~ 214 (260)
.+|++.....+.||.+..|++...
T Consensus 221 ~~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~p~~ 254 (303)
T PLN02403 221 EVLSNGRYKSTLHRVMADKNGSRLSIATFYNPAG 254 (303)
T ss_pred HHHhCCeeecccceeecCCCCCEEEEEEEEcCCC
Confidence 679998777788999999999753
No 46
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.51 E-value=0.85 Score=43.07 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=59.3
Q ss_pred EEEEcCCC-----CCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC---
Q 024926 119 VVEYGMDR-----DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 190 (260)
Q Consensus 119 vvrY~~~~-----d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~--- 190 (260)
+.+|-+-. +-.+++|+|-+.+||... ++ -|||....... ....+++.+++.+|..||.-|.
T Consensus 186 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~--v~GLQV~~~~~-------~~~g~Wi~Vpp~pg~~VVNiGD~L~ 254 (332)
T PLN03002 186 LLRYQGISDPSKGIYACGAHSDFGMMTLLAT--DG--VMGLQICKDKN-------AMPQKWEYVPPIKGAFIVNLGDMLE 254 (332)
T ss_pred eeeCCCCCCcccCccccccccCCCeEEEEee--CC--CCceEEecCCC-------CCCCcEEECCCCCCeEEEEHHHHHH
Confidence 67786632 335789999999999854 33 45677642110 0134677889999999999986
Q ss_pred ---------CCcCccccCccceeEEEeeccch
Q 024926 191 ---------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 ---------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++.. ....||.+..|+.-.
T Consensus 255 ~wTng~~kSt~HRVv~-~~~~R~Sia~F~~p~ 285 (332)
T PLN03002 255 RWSNGFFKSTLHRVLG-NGQERYSIPFFVEPN 285 (332)
T ss_pred HHhCCeeECcCCeecC-CCCCeeEEEEEecCC
Confidence 4599963 456799999999865
No 47
>PLN02997 flavonol synthase
Probab=90.26 E-value=1 Score=42.57 Aligned_cols=80 Identities=20% Similarity=0.148 Sum_probs=59.1
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- ....+++|+|-+.+||... ++ -|||.... ..+++.+++.+|..||.-|.
T Consensus 187 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~Le~ 250 (325)
T PLN02997 187 VNFYPPTQDTELVIGAAAHSDMGAIALLIP--NE--VPGLQAFK------------DEQWLDLNYINSAVVVIIGDQLMR 250 (325)
T ss_pred eecCCCCCCcccccCccCccCCCceEEEec--CC--CCCEEEeE------------CCcEEECCCCCCeEEEEechHHHH
Confidence 5678663 2356899999999999864 33 35677652 23567889999999999986
Q ss_pred --------CCcCccccCccceeEEEeeccchh
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSSV 214 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss~ 214 (260)
.+|++..-....||.+..|+.-..
T Consensus 251 ~TNG~~kSt~HRVv~~~~~~R~Si~fF~~P~~ 282 (325)
T PLN02997 251 MTNGRFKNVLHRAKTDKERLRISWPVFVAPRA 282 (325)
T ss_pred HhCCccccccceeeCCCCCCEEEEEEEecCCC
Confidence 568886544566999999998663
No 48
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.15 E-value=0.91 Score=42.90 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=58.9
Q ss_pred EEEEcCC----CCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~~----~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+- .+..++.|+|-+.+||... ++ ..|||.... ..+++.+++.+|..||.-|.
T Consensus 194 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~-~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~L~~ 258 (337)
T PLN02639 194 VNYYPPCPEPELTYGLPAHTDPNALTILLQ--DQ-QVAGLQVLK------------DGKWVAVNPHPGAFVINIGDQLQA 258 (337)
T ss_pred EEcCCCCCCcccccCCCCCcCCCceEEEEe--cC-CcCceEeec------------CCeEEeccCCCCeEEEechhHHHH
Confidence 5677663 2345889999999999754 21 235566542 23677889999999999985
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-....||++..|+...
T Consensus 259 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 259 LSNGRYKSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred HhCCeeeccCcccccCCCCCEEEEEEEecCC
Confidence 68999755567899999999854
No 49
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=89.26 E-value=1.2 Score=42.60 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEEcC----CCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~----~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+ +....++.|+|-+.+||...=+.+ -|||.... .++++.+++.+|..||.-|.
T Consensus 215 ~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~--v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 280 (361)
T PLN02758 215 MNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGS--CVGLQILK------------DNTWVPVHPVPNALVINIGDTLEV 280 (361)
T ss_pred eecCCCCCCcccccCccCccCCceeEEEEeCCCC--CCCeeeee------------CCEEEeCCCCCCeEEEEccchhhh
Confidence 566754 233457899999999998752211 24566542 23567889999999999986
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-....||.+..|+...
T Consensus 281 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 311 (361)
T PLN02758 281 LTNGKYKSVEHRAVTNKEKDRLSIVTFYAPS 311 (361)
T ss_pred hcCCeeecccceeecCCCCCEEEEEEEecCC
Confidence 67998765556799999999854
No 50
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=89.14 E-value=1.4 Score=42.20 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=58.0
Q ss_pred EEEEcC----CCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~----~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|-+ +....+++|+|-+.+||..+- ++ -|||.... ..+++.+++.+|..||.-|.
T Consensus 217 l~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~-~~--v~GLQV~~------------~g~W~~V~p~pgalVVNiGD~l~~ 281 (362)
T PLN02393 217 VNYYPKCPQPDLTLGLSPHSDPGGMTILLPD-DN--VAGLQVRR------------DDAWITVKPVPDAFIVNIGDQIQV 281 (362)
T ss_pred eeecCCCCCcccccccccccCCceEEEEeeC-CC--CCcceeeE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 567754 223468899999999997642 22 25566542 23567889999999999987
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|++..-....||+++.|+.-.
T Consensus 282 ~Tng~~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 282 LSNAIYKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred hcCCeeeccceecccCCCCCEEEEEEEecCC
Confidence 57998654456799999999875
No 51
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.44 E-value=1.1 Score=39.45 Aligned_cols=97 Identities=20% Similarity=0.322 Sum_probs=59.5
Q ss_pred ccCCeEEEe-cCCCHHHHHHHHHHHHhcc--cccccCCccccccCCCCccceeecccchh-HHHHHHHHHhhhhhhhhhC
Q 024926 29 EPIPGIYTF-EMLQPRFCEMLLSEVENFE--RWVHDTRFRIMRPNTMNKFGAVLDDFGLE-TMLDKLMNDFIRPISKVFF 104 (260)
Q Consensus 29 e~~p~Vy~f-pvft~~fC~~LI~e~e~f~--~w~~~s~~~~~rpn~mn~ygvvldd~gl~-~~~~~l~~~~l~Pl~~~lf 104 (260)
-.+|.++-+ .+.|+|+=..++.-+|+.. +|..-. .....|||=+...-||- ..+-..+..|+..+...
T Consensus 9 ~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~------NRRLqNyGGvvh~~glipeelP~wLq~~v~kinnl-- 80 (224)
T KOG3200|consen 9 KSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA------NRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNL-- 80 (224)
T ss_pred cccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH------hhhhhhcCCccccCCcCccccCHHHHHHHHHhhcc--
Confidence 345655555 5999999999999888765 343211 12356788887777773 22222223333333311
Q ss_pred CCcCCCCCCccceeEEEEcCCCCCCccccccCCe
Q 024926 105 PEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE 138 (260)
Q Consensus 105 p~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S~ 138 (260)
++..+ ..+|..|-+|-+++ ...+|.|.-.
T Consensus 81 -glF~s--~~NHVLVNeY~pgq--GImPHtDGPa 109 (224)
T KOG3200|consen 81 -GLFKS--PANHVLVNEYLPGQ--GIMPHTDGPA 109 (224)
T ss_pred -cccCC--CcceeEeecccCCC--CcCcCCCCCc
Confidence 22222 45577788999998 7999999754
No 52
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=87.32 E-value=1.4 Score=41.58 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=60.5
Q ss_pred EEEEcC----CCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC----
Q 024926 119 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 190 (260)
Q Consensus 119 vvrY~~----~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~---- 190 (260)
+.+|.+ +..-.+++|.|.|-+|+.+.-+ +=|||.+.. +...++.++|.||.-||.-|.
T Consensus 180 ~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~---~V~GLQv~~-----------~dg~Wi~V~P~p~a~vVNiGD~l~~ 245 (322)
T KOG0143|consen 180 LNYYPPCPEPELTLGLGAHTDKSFLTILLQDD---DVGGLQVFT-----------KDGKWIDVPPIPGAFVVNIGDMLQI 245 (322)
T ss_pred EeecCCCcCccccccccCccCcCceEEEEccC---CcCceEEEe-----------cCCeEEECCCCCCCEEEEcccHHhH
Confidence 567765 4445789999999988876433 334555552 133677889999999999865
Q ss_pred --------CCcCccccCccceeEEEeeccch
Q 024926 191 --------HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 191 --------~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
.+|+|..-..+.||.+..|+-.+
T Consensus 246 lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~ 276 (322)
T KOG0143|consen 246 LSNGRYKSVLHRVVVNGEKERISVAFFVFPP 276 (322)
T ss_pred hhCCcccceEEEEEeCCCCceEEEEEEecCC
Confidence 67999999999999999988744
No 53
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=86.76 E-value=1.9 Score=37.23 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=38.9
Q ss_pred ceeEEEEcCCCCCCccccccCCee-----eEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC
Q 024926 116 HGFVVEYGMDRDVELGFHVDDSEV-----TLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR 190 (260)
Q Consensus 116 ~~FvvrY~~~~d~~l~~H~D~S~~-----TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~ 190 (260)
...|-.|.++ ..+++|.|.++. -+.|+||..=. ..|.+.. ..+....+....|+++|-.|.
T Consensus 96 ~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~~r~---F~~~~~~---------~~~~~~~l~L~sGsllvM~G~ 161 (169)
T TIGR00568 96 ACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGLPAI---FLIGGLK---------RNDPPKRLRLHSGDVVIMGGE 161 (169)
T ss_pred EEEEEeecCC--CccccccccccccCCCCEEEEeCCCCEE---EEecCCc---------CCCceEEEEeCCCCEEEECCc
Confidence 3567789888 389999998764 35667764300 1222110 112234567899999999988
Q ss_pred C
Q 024926 191 H 191 (260)
Q Consensus 191 ~ 191 (260)
.
T Consensus 162 s 162 (169)
T TIGR00568 162 S 162 (169)
T ss_pred h
Confidence 3
No 54
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=84.44 E-value=2.6 Score=35.76 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=46.0
Q ss_pred ccceeEEEEcCCCCCCccccccCCeeeEEEeeC--CceeccceEEecccccccccccccccccceecCCCceEEEecCCC
Q 024926 114 SHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH 191 (260)
Q Consensus 114 s~~~FvvrY~~~~d~~l~~H~D~S~~TlnV~L~--~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~ 191 (260)
....++.+-.++. .+.+|.|.+...+.+-|+ -. -++.+|.-.+. .+.-+.|.+++|-.+.
T Consensus 79 ~~~~~~s~l~pg~--~I~pH~d~~~~~lR~Hl~L~~p--~~~~~~~v~~~--------------~~~w~~G~~~~fD~s~ 140 (163)
T PF05118_consen 79 LGRVRFSRLPPGT--HIKPHRDPTNLRLRLHLPLIVP--NPGCYIRVGGE--------------TRHWREGECWVFDDSF 140 (163)
T ss_dssp CEEEEEEEEECTE--EEEEE-SS-TTEEEEEEEEC----STTEEEEETTE--------------EEB--CTEEEEE-TTS
T ss_pred hhhEEEEEECCCC--EECCeeCCCCcceEEEEEEEcC--CCCeEEEECCe--------------EEEeccCcEEEEeCCE
Confidence 3344556666664 899999987644444443 22 12344331111 2356889999999999
Q ss_pred CcCccccCccceeEEEe
Q 024926 192 RHGARATTSGSRVNLLV 208 (260)
Q Consensus 192 ~H~~~pVTsG~Ry~Lv~ 208 (260)
.|++.--....|++|++
T Consensus 141 ~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 141 EHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp -EEEEESSSS-EEEEEE
T ss_pred EEEEEeCCCCCEEEEEE
Confidence 99999999999999986
No 55
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.62 E-value=7.1 Score=36.82 Aligned_cols=98 Identities=20% Similarity=0.148 Sum_probs=56.9
Q ss_pred cceeEEEEcCCCCCC----ccccccCC--------eeeEEEeeCC-ceeccceEEeccccccccccccccc-------cc
Q 024926 115 HHGFVVEYGMDRDVE----LGFHVDDS--------EVTLNVCLGR-EFSGGELFFRGVRCDKHVNTETQSE-------EI 174 (260)
Q Consensus 115 ~~~FvvrY~~~~d~~----l~~H~D~S--------~~TlnV~L~~-dfeGG~l~F~~~~~~~~v~~~~~~~-------~~ 174 (260)
++.+|..=.++.+.. -.||.|-. .+.+-|+|-+ .=+-|-|++-...-+-.+ .+..++ ..
T Consensus 114 ~~~~v~~~~~~~~~p~~~~t~~HqD~~~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~-~~~r~d~~~y~~~~~ 192 (299)
T COG5285 114 RHGHVLWKMPGFQKPGAVATRWHQDYPLVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDV-IPERPDHETYLERNA 192 (299)
T ss_pred cCCeEEEecCCCCCCcccccccccccccccCCccceEEEEEeccccccccCceEEEeccccccc-CCCCCCccchhhhcc
Confidence 344566555555444 78999932 2455555543 123455555432211100 011111 24
Q ss_pred ceecCCCceEEEecCCCCcCccccCccc-ee-EEEeeccch
Q 024926 175 LDYSHVPGYAVLHRGRHRHGARATTSGS-RV-NLLVWCRSS 213 (260)
Q Consensus 175 ~~~~~~~G~avlh~g~~~H~~~pVTsG~-Ry-~Lv~w~rss 213 (260)
+.+...+|++|+|.|++.|+|..-++|. |- +..-|+.+-
T Consensus 193 ~pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 193 VPVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred eeeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEeecc
Confidence 5678899999999999999999999885 33 344455543
No 56
>PHA02866 Hypothetical protein; Provisional
Probab=78.15 E-value=30 Score=32.92 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=86.5
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhc-ccccccCCccccccCCCCccceeecccchh--HHHHHHHHHhhhhhhhhhCCCc
Q 024926 31 IPGIYTFEMLQPRFCEMLLSEVENF-ERWVHDTRFRIMRPNTMNKFGAVLDDFGLE--TMLDKLMNDFIRPISKVFFPEV 107 (260)
Q Consensus 31 ~p~Vy~fpvft~~fC~~LI~e~e~f-~~w~~~s~~~~~rpn~mn~ygvvldd~gl~--~~~~~l~~~~l~Pl~~~lfp~~ 107 (260)
..||.....|..+|=. +.+++... ..|-. |+.- | .. -|+...++... +...+... .++.+.+.-+|++
T Consensus 5 ~~~~~~~~~f~~~f~~-i~~~~~~m~~~w~~-s~i~--~--~~--~~i~~~~~~~~k~k~~~~v~~-~v~~~~~~~~~~~ 75 (333)
T PHA02866 5 TDGVLRLKSFRDDFKG-IKEELKFMLNSWED-SDIL--R--HR--QFIPCEILVLEKSERTKQVFG-AVKRVLASSLTDY 75 (333)
T ss_pred eCCeEEEEEhhhhhhh-HHHHHHHHHhccch-hhhh--h--hc--cCCceeeeehhhhhhhHHHHH-HHHHHHhccCCCc
Confidence 4688888899888643 33333321 12432 3331 1 11 11111111111 22233333 2333333334543
Q ss_pred CCCCCCccceeEEEEcCCCCCCcccccc----CC----eeeEEEeeCCceeccceEEecccccccccccccccccceecC
Q 024926 108 GGSTLDSHHGFVVEYGMDRDVELGFHVD----DS----EVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSH 179 (260)
Q Consensus 108 ~~~~Lds~~~FvvrY~~~~d~~l~~H~D----~S----~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~ 179 (260)
.. -++.|.. +|+|..|- +|.-|+| ++ +++|.++|+.-=+||++.++=..++. .
T Consensus 76 dv-~v~~~~t-~vk~~kg~--~fdn~~~~~~~~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~---------------i 136 (333)
T PHA02866 76 DV-YVCEHLT-IVKCFKGV--GFDNRFSILTEDRHRGREYTLVLHLSSPKNGGKTDVCVGDKTV---------------I 136 (333)
T ss_pred cE-EEeeeEE-EEEEeccc--ccccceeEEEeccCCceEEEEEEEEeccccCCceEEEeCCCce---------------E
Confidence 22 3456655 68887764 6777766 23 69999999998899999998333321 2
Q ss_pred CCceEEEecCCCCcCccccCccceeEEE
Q 024926 180 VPGYAVLHRGRHRHGARATTSGSRVNLL 207 (260)
Q Consensus 180 ~~G~avlh~g~~~H~~~pVTsG~Ry~Lv 207 (260)
..-.=+||.-++.|+..-|.+|++++++
T Consensus 137 ~~~~DvLFDKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 137 STADDFLLEKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred eeccceeeeccccccceeeecCcEEEEE
Confidence 3355689999999999999999997653
No 57
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=75.32 E-value=5.8 Score=37.47 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=51.8
Q ss_pred cccee-ecccchhHHHHHHHHHhhhhhhhhhCCCcCCCCCC-ccceeEEEEcCCCCCCccccccCCe------eeEEEee
Q 024926 74 KFGAV-LDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLD-SHHGFVVEYGMDRDVELGFHVDDSE------VTLNVCL 145 (260)
Q Consensus 74 ~ygvv-ldd~gl~~~~~~l~~~~l~Pl~~~lfp~~~~~~Ld-s~~~FvvrY~~~~d~~l~~H~D~S~------~TlnV~L 145 (260)
+|||+ +|++.-...-+..+-+.+.|+-..+|.+.-..+=+ ++ . =.-|... .|++|+|++- +-+.=||
T Consensus 136 ~YGi~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~-~-DTAYtkl---~lg~HTD~TYF~~~~GiQvfHCl 210 (371)
T KOG3889|consen 136 KYGIIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAY-E-DTAYTKL---ELGPHTDGTYFDQTPGIQVFHCL 210 (371)
T ss_pred heeEEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCcc-c-cccceee---eecccCCCceeccCCCceEEEee
Confidence 48887 55565544445555568889999999753211101 11 1 1225444 6999999874 4666789
Q ss_pred CCceeccceEEec
Q 024926 146 GREFSGGELFFRG 158 (260)
Q Consensus 146 ~~dfeGG~l~F~~ 158 (260)
...=+||++.|-+
T Consensus 211 ~h~gtGG~t~lVD 223 (371)
T KOG3889|consen 211 THAGTGGDTVLVD 223 (371)
T ss_pred cccCCCCceEEEe
Confidence 8888999999863
No 58
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=75.07 E-value=38 Score=33.57 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=103.9
Q ss_pred cccCCeEEEecCCCHHHHHHHHHHHHhcccccc-cCCccccccCCCCcccee--ecccch---hHHHHHHHHHhhhhhhh
Q 024926 28 AEPIPGIYTFEMLQPRFCEMLLSEVENFERWVH-DTRFRIMRPNTMNKFGAV--LDDFGL---ETMLDKLMNDFIRPISK 101 (260)
Q Consensus 28 ~e~~p~Vy~fpvft~~fC~~LI~e~e~f~~w~~-~s~~~~~rpn~mn~ygvv--ldd~gl---~~~~~~l~~~~l~Pl~~ 101 (260)
..|.+-+..=+++++.--+.+-.|++++..|.. ..++ -| .++.|=+ ++.+.. -.+=+.|++++-.-
T Consensus 33 ngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~tDl--yr---~~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~--- 104 (476)
T KOG3844|consen 33 NGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKETDL--YR---VLQTGDLANLEGLEFPALFSFRDSLYKEARGE--- 104 (476)
T ss_pred cCCCcceeeeccCCHHHHHHHHHHHhhccchhhhcchh--hh---eeccccccccccccchhHHHHHHHHHHHHHHH---
Confidence 356666666688998877777777777665532 1222 11 1111111 222222 11223333222222
Q ss_pred hhCCCcCCCCC-CccceeEEEEcCCCCCCccccccCC---eeeEEEeeC--C---ceeccceEEeccccccccccccccc
Q 024926 102 VFFPEVGGSTL-DSHHGFVVEYGMDRDVELGFHVDDS---EVTLNVCLG--R---EFSGGELFFRGVRCDKHVNTETQSE 172 (260)
Q Consensus 102 ~lfp~~~~~~L-ds~~~FvvrY~~~~d~~l~~H~D~S---~~TlnV~L~--~---dfeGG~l~F~~~~~~~~v~~~~~~~ 172 (260)
+..+.|..+ ...+.++-+|..+. +|-.|-|.- .+++..+|- + +| ||+|......|.- .+.+
T Consensus 105 --~q~vtg~~s~sk~Dms~s~Y~kgd--~LL~HDD~ietRriaFilYL~~~Dwds~~-GG~L~Lf~~d~~~---~P~s-- 174 (476)
T KOG3844|consen 105 --IQDVTGGLSTSKIDMSGSYYRKGD--HLLCHDDVIETRRIAFILYLVDPDWDSEY-GGELRLFPDDCPS---QPKS-- 174 (476)
T ss_pred --HHhccCccccceeeeceeeeeccc--eeccccccccceEEEEEEEecCccccccc-CceeEeccccccc---Cccc--
Confidence 222332211 12245577898775 899999954 499999994 3 57 9999988776632 1111
Q ss_pred ccceecCCCceEEEecCC--CCcCccccCcc-ceeEEEeeccchhhhhhHhh
Q 024926 173 EILDYSHVPGYAVLHRGR--HRHGARATTSG-SRVNLLVWCRSSVFRELKKY 221 (260)
Q Consensus 173 ~~~~~~~~~G~avlh~g~--~~H~~~pVTsG-~Ry~Lv~w~rss~~R~~~~~ 221 (260)
-+....|.-.+.++|.=+ ..|.+--|.+- .|.++-+|.+....=+..+|
T Consensus 175 ~~asl~P~~Nql~fFeVsp~SFH~V~Ev~sde~RlSIsGWfH~p~~~ePg~~ 226 (476)
T KOG3844|consen 175 VAASLEPQWNQLVFFEVSPISFHDVEEVLSDEPRLSISGWFHFPQIGEPGDG 226 (476)
T ss_pred hhhccCcccceEEEEEecccchhhHHHHhccCcceeEeeeecCCccCCCCCC
Confidence 223456777888888765 78998888754 47999999998876555544
No 59
>PHA02923 hypothetical protein; Provisional
Probab=72.21 E-value=11 Score=35.65 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred CccceeEEEEcCCCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCCC
Q 024926 113 DSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHR 192 (260)
Q Consensus 113 ds~~~FvvrY~~~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~ 192 (260)
+.+-. +++|..+.+-.+ .| |+-++.|.++|+..=+||.+.+...... -..-.=+||.-++.
T Consensus 66 ~n~iT-~ikYekgd~~~l-~~-~~~~y~LvLyL~~p~~GGt~i~~~~~t~----------------i~~~~DvLFdKsl~ 126 (315)
T PHA02923 66 SSTIS-FIKYNPFNDTTL-TD-DNMGYYLVIYLNRPKSGKTLIYPTPETV----------------ITSSEDIMFSKSLN 126 (315)
T ss_pred eceEE-EEEEcCCCccee-ec-CceEEEEEEEEeccCCCCeEEEecCCCe----------------Eeeccceeeecccc
Confidence 44444 688999876445 44 6678999999997777999998865422 23345689999999
Q ss_pred cCccccCccceeEEEe
Q 024926 193 HGARATTSGSRVNLLV 208 (260)
Q Consensus 193 H~~~pVTsG~Ry~Lv~ 208 (260)
|+..-|.+|++.+++.
T Consensus 127 h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 127 FRFENVKRGYKLVMCS 142 (315)
T ss_pred cceeeeecCcEEEEEE
Confidence 9999999999997654
No 60
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=71.39 E-value=7.7 Score=34.71 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccCC------eeeEEEeeCCceeccceEEec
Q 024926 87 MLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDS------EVTLNVCLGREFSGGELFFRG 158 (260)
Q Consensus 87 ~~~~l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S------~~TlnV~L~~dfeGG~l~F~~ 158 (260)
.+..+.. .+.++....|+++....-+.. ....-| ....+.+|+|.+ .+.+.-||...-+||++.|..
T Consensus 58 ~~~~~~~-~~g~~~~~~~~~~~~v~~~~~-~~~~~~---t~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 58 ALLGLAE-RIGFIRGTLYGDVVPVPGKEN-AQNGAY---TNTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred HHHHHHH-HhcccccccCCCeEEeccCCC-cccccc---ccCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 3444444 334666566664432111111 112224 234799999985 689999998777899999986
No 61
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=63.55 E-value=2.2 Score=42.31 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=48.3
Q ss_pred EEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCC--CCcCccccCccceeEEEeeccch
Q 024926 142 NVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGARATTSGSRVNLLVWCRSS 213 (260)
Q Consensus 142 nV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~--~~H~~~pVTsG~Ry~Lv~w~rss 213 (260)
..++++||+||++.|....-.+ + -...+++.|+-+-+..+ .-|+..+||+|.|-.+-.|.-.+
T Consensus 371 ~~~~~dd~~~~el~~t~~d~~t-~--------~a~~k~~~~re~~~~~g~e~~~~~~~~~kg~e~~~~lw~~~~ 435 (471)
T KOG4459|consen 371 LLYLNDDFEGGELLFTEPDAKT-Y--------TAISKPECGRECAFSSGAENPHGVKAVTKGLECAVALWPTLA 435 (471)
T ss_pred cHhhcCccccccceecCCcccc-h--------hhccccccccchhhhccccCccchhhhhhhhHHhhhcCcccC
Confidence 3457899999999998654321 1 11236778887777766 89999999999999999998765
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=61.20 E-value=1e+02 Score=27.07 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=65.3
Q ss_pred ccchhHHHHHHHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccCCeeeEEEeeCCceecc-ceEEecc
Q 024926 81 DFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGG-ELFFRGV 159 (260)
Q Consensus 81 d~gl~~~~~~l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S~~TlnV~L~~dfeGG-~l~F~~~ 159 (260)
-+.+.+|++.=... |-|.++...+-....|.|..-.+......+|.|.++-.+-+ | +|. .+.+.+.
T Consensus 6 p~n~~~Wieen~~~--------l~pPv~n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE~Fyq-l----eG~~~l~v~d~ 72 (177)
T PRK13264 6 PFNLHKWIEEHRHL--------LKPPVGNKQIWQDSDFIVMVVGGPNARTDFHYDPGEEFFYQ-L----EGDMYLKVQED 72 (177)
T ss_pred CccHHHHHHhhHHH--------hCCCCCCeeeEcCCCEEEEEEccCCcccccccCCCceEEEE-E----CCeEEEEEEcC
Confidence 35677777554432 22445544432112355555445445799999887644433 2 111 1112110
Q ss_pred cccccccccccccccceecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhhhHhhhhhcccccchhhhhhh
Q 024926 160 RCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKK 237 (260)
Q Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~~~~~~~~~~~~c~~c~~~~~ 237 (260)
.. .-++...+|..++.|....|.... ..|+.-.+|==-|..- -...|.-.|+.|...--
T Consensus 73 -g~-----------~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~r~~~------~~d~~~wyc~~c~~~~~ 131 (177)
T PRK13264 73 -GK-----------RRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERKRPEG------ELDGFQWYCDECNHKVH 131 (177)
T ss_pred -Cc-----------eeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeCCCCC------CccceEEECCCCCCeEE
Confidence 00 012356889999999999999876 3554444432222221 12345566888865443
No 63
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=59.39 E-value=26 Score=33.36 Aligned_cols=30 Identities=33% Similarity=0.639 Sum_probs=25.3
Q ss_pred CccccccCC------eeeEEEeeCCceeccceEEec
Q 024926 129 ELGFHVDDS------EVTLNVCLGREFSGGELFFRG 158 (260)
Q Consensus 129 ~l~~H~D~S------~~TlnV~L~~dfeGG~l~F~~ 158 (260)
.+.+|.|.+ .+++.-|+...=+||++.|..
T Consensus 186 ~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRDHPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccCCCCceeeeeecccCCCCcceeeee
Confidence 688999976 478888997777899999975
No 64
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=58.66 E-value=16 Score=33.78 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=59.4
Q ss_pred HHHHhhhcccCCeEEEec-CCCHHHHHHHHHHHHhcccccccCCccccccCCCCccc---------eeecc-cchh---H
Q 024926 21 ASFRSIMAEPIPGIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFG---------AVLDD-FGLE---T 86 (260)
Q Consensus 21 ~~~~~~~~e~~p~Vy~fp-vft~~fC~~LI~e~e~f~~w~~~s~~~~~rpn~mn~yg---------vvldd-~gl~---~ 86 (260)
|+...-..-|.|||..+. ++|.++=.+||..++.-+ |.. |... +| ..+|| +-++. .||- .
T Consensus 61 e~~~~d~~~p~pG~~lie~Fls~~Eea~l~~~~D~~p-W~~-SQSG-RR---KQdyGPKvNFkk~Klkt~~F~G~P~~~~ 134 (306)
T KOG3959|consen 61 ESVSTDGSIPIPGLTLIENFLSESEEAKLLNMIDTVP-WAQ-SQSG-RR---KQDYGPKVNFKKKKLKTDTFVGMPEYAD 134 (306)
T ss_pred cccccCCccccCCeeehhhhhccchHhHHHHHhccCc-hhh-hccc-cc---ccccCCccchhhhhhccCcccCCchHHH
Confidence 444444566889999995 999999999999999765 321 1111 11 12333 22333 2443 2
Q ss_pred HHHHHHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccCC
Q 024926 87 MLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDS 137 (260)
Q Consensus 87 ~~~~l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S 137 (260)
++..-|. .||...+ +.....--..|.+.+.....+|.|+.
T Consensus 135 ~v~rrm~---------~yp~l~g--fqp~EqCnLeYep~kgsaIdpH~DD~ 174 (306)
T KOG3959|consen 135 MVLRRMS---------EYPVLKG--FQPFEQCNLEYEPVKGSAIDPHQDDM 174 (306)
T ss_pred HHHHHhh---------ccchhhc--cCcHHHcCcccccccCCccCccccch
Confidence 3333332 2443322 33333335789999999999999975
No 65
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=54.14 E-value=32 Score=31.94 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=60.3
Q ss_pred CCCChhHHHHcccccHHHHHhhhcccCCeEEEecCCCHHHHHHHHHHHHhccc-----ccccC----CccccccCCCCcc
Q 024926 5 SVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFER-----WVHDT----RFRIMRPNTMNKF 75 (260)
Q Consensus 5 ~~~~p~f~~~i~~~~~~~~~~~~~e~~p~Vy~fpvft~~fC~~LI~e~e~f~~-----w~~~s----~~~~~rpn~mn~y 75 (260)
+|+.|.+|+. .+.+.+.....+. .-|--..+|.+++.+.|-+.++.-+. +.... +-.+..|-+..+|
T Consensus 8 ~~InP~YL~~---~~~~~i~~~F~e~-S~i~L~~FL~~~~~~~L~~~l~~~e~~~~~~p~~~~~~~~~W~~~gPphK~rY 83 (266)
T PF10637_consen 8 KWINPSYLTP---DTIEQIQEQFEEE-SEIQLENFLKPEKAEQLKEALESQEIEDLSLPQSSKEVEKPWKVAGPPHKRRY 83 (266)
T ss_dssp TTB-HHHCSH---HHHHHHHHHHHHH-SEEEESS-B-HHHHHHHHHHHHHHHHH-S----SGGG--TT-EE-B-TTTEE-
T ss_pred HhcCchhcCH---HHHHHHHHHHHhc-ceEeHHHhcCHHHHHHHHHHHHhhccccccCCCcccccCCCceECCCChhhhe
Confidence 5667766543 3344444444333 35666689999999999888865432 00000 1122345556666
Q ss_pred ceeeccc----------chhHH----HHHHHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCcccccc--CCee
Q 024926 76 GAVLDDF----------GLETM----LDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVD--DSEV 139 (260)
Q Consensus 76 gvvldd~----------gl~~~----~~~l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D--~S~~ 139 (260)
-.+-..- ++... +..+..=+-....+++.-.+.+-.+-.+...+-|+.+|.|=-|.-..| +..+
T Consensus 84 ~~~~~~~~~~~~~~~~~pl~e~~~~~l~~l~~lf~S~aF~~~L~~~TgL~l~~~~~~~RRfr~G~dYTLa~~~~~~~~~L 163 (266)
T PF10637_consen 84 LYLDPKSEASINSDNKSPLPELPPFLLRELMDLFKSEAFFKWLSNLTGLDLTSCQIEARRFRPGLDYTLATDEDEEEPRL 163 (266)
T ss_dssp EEE-SSSHHHHHHHH---------SHHHHHHHHHHSHHHHHHHHHHHSEEE-EEEEEEEEE-TTT-EE--B---EEEEEE
T ss_pred eEeCCcccccccccccccccchhHHHHHHHHHHcCCHHHHHHHHHHHCCCCccCceEEEEccCCCCeEEecCCCCCceEE
Confidence 5552222 11111 111111111111111111222223344455567888886544555555 3345
Q ss_pred eEEEeeC-C------ceeccceEEecc
Q 024926 140 TLNVCLG-R------EFSGGELFFRGV 159 (260)
Q Consensus 140 TlnV~L~-~------dfeGG~l~F~~~ 159 (260)
-++++|+ . ++.|-++|..+.
T Consensus 164 d~~L~ltp~~~W~~~e~GG~e~Ym~~d 190 (266)
T PF10637_consen 164 DVTLCLTPSKGWESGEVGGYECYMAGD 190 (266)
T ss_dssp EEEEEE---S-TTTTTT---EEEEE--
T ss_pred EEEEEecCCCCCCCCccccEEEEEcCC
Confidence 5555664 2 688888888543
No 66
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.51 E-value=6.4 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=20.7
Q ss_pred ccCccceeEEEeeccchhhhhhHhhhhhcccccchhhh
Q 024926 197 ATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQR 234 (260)
Q Consensus 197 pVTsG~Ry~Lv~w~rss~~R~~~~~~~~~~~~c~~c~~ 234 (260)
.+++|.+ +.|.|.-|-.=+-= .||||-|..
T Consensus 21 ~~~n~~~-ifvlF~gskd~~tG-------qSWCPdCV~ 50 (128)
T KOG3425|consen 21 NVENGKT-IFVLFLGSKDDTTG-------QSWCPDCVA 50 (128)
T ss_pred HHhCCce-EEEEEecccCCCCC-------CcCCchHHH
Confidence 3568888 88888876533332 399999943
No 67
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=49.35 E-value=23 Score=33.79 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred cccee-ecccchhHHHHHHHHHhhhhhhhhhCCCcCCCCCCccceeEEEEcCCCCCCccccccCC------eeeEEEeeC
Q 024926 74 KFGAV-LDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDS------EVTLNVCLG 146 (260)
Q Consensus 74 ~ygvv-ldd~gl~~~~~~l~~~~l~Pl~~~lfp~~~~~~Lds~~~FvvrY~~~~d~~l~~H~D~S------~~TlnV~L~ 146 (260)
+||++ +.++..+..-..-+.+.+.|+-...|.++.....+.... -.-|... .+.+|+|.+ .+++.-||.
T Consensus 126 ~~G~v~~~g~~~~~~~~~~~a~riG~~r~t~~g~~~~v~~~~~~~-~~ayt~~---~l~~HtD~~y~~~pp~~~~L~c~~ 201 (362)
T TIGR02410 126 KYGFTFVDNVPVTPEATEKLCERISIIRPTHYGGFWDFTSDLSKN-DTAYTSL---AIDMHTDGTYWDETPGLQLFHCLT 201 (362)
T ss_pred hhCEEEEcCCCCCHHHHHHHHHHhccceecCCCCeEEEEecCCCc-ccccccC---CccccccCCCCCCCCcceeEeeee
Q ss_pred CceeccceEE
Q 024926 147 REFSGGELFF 156 (260)
Q Consensus 147 ~dfeGG~l~F 156 (260)
..=+||++.|
T Consensus 202 ~~~~GG~t~~ 211 (362)
T TIGR02410 202 HDGTGGETVL 211 (362)
T ss_pred cCCCCCceee
No 68
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=46.69 E-value=81 Score=26.76 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.7
Q ss_pred ecCCCceEEEecCCCCcCccccC
Q 024926 177 YSHVPGYAVLHRGRHRHGARATT 199 (260)
Q Consensus 177 ~~~~~G~avlh~g~~~H~~~pVT 199 (260)
|...+|+.+.+++...|......
T Consensus 148 ~~l~~Gd~~~~~~~~~H~~~n~~ 170 (185)
T PRK09943 148 YHLVAGQSYAINTGIPHSFSNTS 170 (185)
T ss_pred EEecCCCEEEEcCCCCeeeeCCC
Confidence 46789999999999999988754
No 69
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=39.33 E-value=21 Score=30.95 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCCccccccCC------eeeEEEeeCCceeccceEEec
Q 024926 127 DVELGFHVDDS------EVTLNVCLGREFSGGELFFRG 158 (260)
Q Consensus 127 d~~l~~H~D~S------~~TlnV~L~~dfeGG~l~F~~ 158 (260)
...+.+|+|.+ .+.+..|+...-+||++.|..
T Consensus 94 ~~~l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d 131 (258)
T PF02668_consen 94 NGELPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFAD 131 (258)
T ss_dssp SSGEEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEE
T ss_pred hcccccccccCcccCCcceeEEEeeccCCCCCcccccc
No 70
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=38.55 E-value=12 Score=27.37 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=8.9
Q ss_pred cccccchhhhh
Q 024926 225 CSSWCAECQRE 235 (260)
Q Consensus 225 ~~~~c~~c~~~ 235 (260)
+++|||-|.+-
T Consensus 6 ~a~~C~~C~~~ 16 (76)
T TIGR00412 6 YGTGCANCQMT 16 (76)
T ss_pred ECCCCcCHHHH
Confidence 57999999664
No 71
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=37.96 E-value=12 Score=28.37 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=8.0
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|..+-
T Consensus 31 ~wC~~C~~~~ 40 (114)
T cd02967 31 PTCPVCKKLL 40 (114)
T ss_pred CCCcchHhHh
Confidence 7999997653
No 72
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=37.76 E-value=13 Score=29.29 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=7.8
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+.|.++
T Consensus 32 a~~C~~C~~~ 41 (126)
T cd03012 32 TYCCINCLHT 41 (126)
T ss_pred CCCCccHHHH
Confidence 4799999754
No 73
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=37.07 E-value=80 Score=29.46 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCccccccCCe-eeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCCCcCccc
Q 024926 119 VVEYGMDRDVELGFHVDDSE-VTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARA 197 (260)
Q Consensus 119 vvrY~~~~d~~l~~H~D~S~-~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~p 197 (260)
+..|+.++ ..-..+.+++. .++.|||...+.||++.+....-. + .-...+.+|.||+=.---.=-+.+
T Consensus 54 i~~f~~~~-~~~~~~~~~~~~sr~lvCi~sakkGG~iii~~~~~~-~---------kkii~~~~~~aVlLspl~~y~Vs~ 122 (266)
T PF06822_consen 54 IQVFDKGQ-CYKSRIQDNSSLSRILVCIQSAKKGGCIIIRNTISN-D---------KKIITPNQNMAVLLSPLADYDVSN 122 (266)
T ss_pred EEEEeCCC-ceeccccCCCcceeEEEEeeccccCCeEEEeecccC-C---------ceEEecCCCeEEEecchhheEEEE
Confidence 44566554 22223555554 689999999999999999875322 1 124579999999977777777889
Q ss_pred cCccceeEEEeeccchhhhhhH
Q 024926 198 TTSGSRVNLLVWCRSSVFRELK 219 (260)
Q Consensus 198 VTsG~Ry~Lv~w~rss~~R~~~ 219 (260)
|++|.=..+++=+.-+.+|-+.
T Consensus 123 V~~G~~i~i~l~idIPSmri~~ 144 (266)
T PF06822_consen 123 VTKGSMIIIVLDIDIPSMRIIY 144 (266)
T ss_pred ecCCcEEEEEEEeccCccEEEe
Confidence 9999999999888888777443
No 74
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=36.18 E-value=44 Score=33.03 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=26.1
Q ss_pred CCCceEEEecCCCCcCccccCccceeEEEeeccchhhhhhHhhhhhcccccchhhhhhhH
Q 024926 179 HVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKE 238 (260)
Q Consensus 179 ~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~~~~~~~~~~~~c~~c~~~~~~ 238 (260)
.+||+.|...+...|.+.++..|....-|+.+= -||.|..|..-
T Consensus 324 v~PGD~V~WHcD~iH~Vd~~h~g~~~ssV~Yip----------------a~Plt~~N~~Y 367 (416)
T PF07350_consen 324 VEPGDYVFWHCDLIHAVDPEHNGKGDSSVMYIP----------------ACPLTPKNAAY 367 (416)
T ss_dssp B-TT-EEEEETT--EEE--BSS-SS---EEE------------------B-EESHHHHHH
T ss_pred CCCCCeEEEeCCccccccccCCCCCCCCeeEec----------------CCCCchHHHHH
Confidence 589999999999999999999999998885443 39999776653
No 75
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=34.63 E-value=18 Score=25.72 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.3
Q ss_pred ccccchhhhhhhH
Q 024926 226 SSWCAECQREKKE 238 (260)
Q Consensus 226 ~~~c~~c~~~~~~ 238 (260)
+.||+.|..-+..
T Consensus 8 ~~~C~~C~~~~~~ 20 (82)
T TIGR00411 8 SPTCPYCPAAKRV 20 (82)
T ss_pred CCCCcchHHHHHH
Confidence 5899999654443
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=33.58 E-value=16 Score=30.82 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=8.3
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
++|||-|.++-
T Consensus 59 AsWCppCr~e~ 69 (153)
T TIGR02738 59 QSTCPYCHQFA 69 (153)
T ss_pred CCCChhHHHHH
Confidence 37999996654
No 77
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=32.46 E-value=16 Score=29.11 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=8.2
Q ss_pred c-ccchhhhhhh
Q 024926 227 S-WCAECQREKK 237 (260)
Q Consensus 227 ~-~c~~c~~~~~ 237 (260)
+ |||.|..+-.
T Consensus 38 ~~~Cp~C~~~~p 49 (146)
T PF08534_consen 38 SAWCPPCRKELP 49 (146)
T ss_dssp TTTSHHHHHHHH
T ss_pred cCCCCcchhhhh
Confidence 5 8999966543
No 78
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=32.34 E-value=16 Score=26.82 Aligned_cols=10 Identities=40% Similarity=1.447 Sum_probs=7.1
Q ss_pred cccccchhhh
Q 024926 225 CSSWCAECQR 234 (260)
Q Consensus 225 ~~~~c~~c~~ 234 (260)
+++||+.|..
T Consensus 9 wa~~c~~c~~ 18 (95)
T PF13905_consen 9 WASWCPPCKK 18 (95)
T ss_dssp E-TTSHHHHH
T ss_pred ECCCCHHHHH
Confidence 4689999954
No 79
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=31.64 E-value=21 Score=26.28 Aligned_cols=13 Identities=0% Similarity=-0.163 Sum_probs=9.4
Q ss_pred ccccchhhhhhhH
Q 024926 226 SSWCAECQREKKE 238 (260)
Q Consensus 226 ~~~c~~c~~~~~~ 238 (260)
+.||+.|.+....
T Consensus 21 a~wC~~C~~~~~~ 33 (96)
T cd02956 21 APRSPPSKELLPL 33 (96)
T ss_pred CCCChHHHHHHHH
Confidence 4799999765443
No 80
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=31.21 E-value=55 Score=26.34 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=12.9
Q ss_pred cccccchhhhhhhHHHH
Q 024926 225 CSSWCAECQREKKERQC 241 (260)
Q Consensus 225 ~~~~c~~c~~~~~~~~~ 241 (260)
=|+.||.|++++.|=..
T Consensus 30 ~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 30 NSSQCPSCNKKRAELAQ 46 (104)
T ss_pred CcccChHHHHHHHHHHH
Confidence 47899999988777433
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=31.11 E-value=18 Score=30.31 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=8.4
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
++|||.|..+-
T Consensus 34 AsWCppCr~e~ 44 (146)
T cd03008 34 AVVSPQCQLFA 44 (146)
T ss_pred CCCChhHHHHH
Confidence 38999996654
No 82
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=30.23 E-value=2e+02 Score=27.81 Aligned_cols=72 Identities=14% Similarity=0.027 Sum_probs=43.3
Q ss_pred eEEEEcCCCCCCccccccCCeeeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCCCcCccc
Q 024926 118 FVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARA 197 (260)
Q Consensus 118 FvvrY~~~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~p 197 (260)
..+++.++.-..+-|| .+.|+.+.+ . |.+++.=... ..+.+.....+|+.+++|....|....
T Consensus 70 ~~~~l~pG~~~~~HwH-~~~E~~yVl--~-----G~~~v~~~d~---------~g~~~~~~L~~GD~~~fP~g~~H~~~n 132 (367)
T TIGR03404 70 VNMRLEPGAIRELHWH-KEAEWAYVL--Y-----GSCRITAVDE---------NGRNYIDDVGAGDLWYFPPGIPHSLQG 132 (367)
T ss_pred eEEEEcCCCCCCcccC-CCceEEEEE--e-----eEEEEEEEcC---------CCcEEEeEECCCCEEEECCCCeEEEEE
Confidence 4567888877778888 466743333 2 2222211000 011222246889999999999999998
Q ss_pred cCccceeEE
Q 024926 198 TTSGSRVNL 206 (260)
Q Consensus 198 VTsG~Ry~L 206 (260)
+..+.++++
T Consensus 133 ~~~~~~~l~ 141 (367)
T TIGR03404 133 LDEGCEFLL 141 (367)
T ss_pred CCCCeEEEE
Confidence 866666433
No 83
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=30.20 E-value=3.4e+02 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=22.9
Q ss_pred cccccCC------eeeEEEeeCCceeccceEEec
Q 024926 131 GFHVDDS------EVTLNVCLGREFSGGELFFRG 158 (260)
Q Consensus 131 ~~H~D~S------~~TlnV~L~~dfeGG~l~F~~ 158 (260)
.||.|.| .+++.-|+--.=+||+|.|..
T Consensus 95 ~wHtD~sy~~~pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIETPPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCeeCCCceeEEEEEecCCCCCccHhhh
Confidence 5999987 378888886556899999964
No 84
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=28.62 E-value=22 Score=26.89 Aligned_cols=12 Identities=25% Similarity=1.154 Sum_probs=8.8
Q ss_pred ccccchhhhhhh
Q 024926 226 SSWCAECQREKK 237 (260)
Q Consensus 226 ~~~c~~c~~~~~ 237 (260)
++||+-|.....
T Consensus 24 a~wC~~C~~~~p 35 (104)
T cd03000 24 APWCGHCKKLEP 35 (104)
T ss_pred CCCCHHHHhhCh
Confidence 479999975543
No 85
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=28.23 E-value=3.9e+02 Score=23.01 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=35.6
Q ss_pred ecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhhhHhhhhhcccccchhhhhhhH
Q 024926 177 YSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKE 238 (260)
Q Consensus 177 ~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~~~~~~~~~~~~c~~c~~~~~~ 238 (260)
+...+|..++-|....|...+ ..|+.-.+|==-|... + ...|.-.|+.|...--|
T Consensus 72 v~L~eGd~flvP~gvpHsP~r-~~~t~~LvIE~~r~~~-----~-~d~~~wyc~~c~~~~~e 126 (159)
T TIGR03037 72 VPIREGDIFLLPPHVPHSPQR-PAGSIGLVIERKRPQG-----E-LDGFQWFCPQCGHKLHR 126 (159)
T ss_pred EEECCCCEEEeCCCCCccccc-CCCcEEEEEEeCCCCC-----C-CcceEEECCCCCCeEEE
Confidence 357889999999999999888 3555555443332221 1 24455669999655443
No 86
>PHA02985 hypothetical protein; Provisional
Probab=28.10 E-value=2.1e+02 Score=26.80 Aligned_cols=89 Identities=8% Similarity=0.104 Sum_probs=65.7
Q ss_pred EEEEcCCCCCCccccccCCe-eeEEEeeCCceeccceEEecccccccccccccccccceecCCCceEEEecCCCCcCccc
Q 024926 119 VVEYGMDRDVELGFHVDDSE-VTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARA 197 (260)
Q Consensus 119 vvrY~~~~d~~l~~H~D~S~-~TlnV~L~~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g~~~H~~~p 197 (260)
+..|+.++ . -.|.|++. -.+.||+...+.||++......+. ... ...+..|.||+=.--..=-+.+
T Consensus 61 i~~f~~~~--~-~~~~~~~~~SkilICiqsAkkGG~iIi~~~~~~--------~K~--ii~~~~n~aVlLSPLs~Y~Vs~ 127 (271)
T PHA02985 61 IEVFNKKK--K-YYQNIPSRLSKIIICIQSAKKGGCIIIINNITN--------NKK--IITLNINHIIILSPLSKYTVSK 127 (271)
T ss_pred EEEEcCCc--c-eEeeCCCCceeEEEEEeecccCCEEEEeccccc--------Cce--EEecCCCeEEEecchhhceEEE
Confidence 44466552 2 45656665 478899999999999998653321 111 3478999999977766777899
Q ss_pred cCccceeEEEeeccchhhhhhHh
Q 024926 198 TTSGSRVNLLVWCRSSVFRELKK 220 (260)
Q Consensus 198 VTsG~Ry~Lv~w~rss~~R~~~~ 220 (260)
|++|.=..+++=+..+.+|-+.+
T Consensus 128 V~kGsli~i~l~idIPSmr~i~~ 150 (271)
T PHA02985 128 VSKGSLIIIVLDIDIPSMRIVYS 150 (271)
T ss_pred ecCCcEEEEEEEecCCceEEEEe
Confidence 99999999999999988886553
No 87
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=27.99 E-value=22 Score=25.19 Aligned_cols=11 Identities=36% Similarity=1.271 Sum_probs=8.9
Q ss_pred cccccchhhhh
Q 024926 225 CSSWCAECQRE 235 (260)
Q Consensus 225 ~~~~c~~c~~~ 235 (260)
|+.|||-|...
T Consensus 40 ~~~~C~~C~~~ 50 (127)
T COG0526 40 WAPWCPPCRAE 50 (127)
T ss_pred EcCcCHHHHhh
Confidence 57999999655
No 88
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=27.67 E-value=26 Score=26.97 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=9.8
Q ss_pred ccccchhhhhhhH
Q 024926 226 SSWCAECQREKKE 238 (260)
Q Consensus 226 ~~~c~~c~~~~~~ 238 (260)
+.||+-|.+-++.
T Consensus 30 a~wC~~C~~~~~~ 42 (109)
T cd02993 30 APWCPFCQAMEAS 42 (109)
T ss_pred CCCCHHHHHHhHH
Confidence 4799999876554
No 89
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=27.07 E-value=27 Score=27.17 Aligned_cols=10 Identities=60% Similarity=1.577 Sum_probs=7.9
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|..+.
T Consensus 35 ~~C~~C~~~~ 44 (127)
T cd03010 35 SWCAPCREEH 44 (127)
T ss_pred CcCHHHHHHH
Confidence 7899997654
No 90
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=27.04 E-value=24 Score=26.50 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=7.7
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+-|.+-
T Consensus 28 a~wC~~C~~~ 37 (104)
T cd03004 28 APWCGPCQAL 37 (104)
T ss_pred CCCCHHHHHH
Confidence 4799999653
No 91
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=26.99 E-value=23 Score=27.00 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=8.0
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+-|...
T Consensus 24 a~wC~~C~~~ 33 (103)
T cd02985 24 LKHSGPSVKI 33 (103)
T ss_pred CCCCHhHHHH
Confidence 5899999754
No 92
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=26.25 E-value=27 Score=25.77 Aligned_cols=10 Identities=40% Similarity=1.381 Sum_probs=7.8
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|....
T Consensus 26 ~wC~~C~~~~ 35 (102)
T cd03005 26 PWCGHCKRLA 35 (102)
T ss_pred CCCHHHHHhC
Confidence 6999997553
No 93
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=25.94 E-value=1.5e+02 Score=26.40 Aligned_cols=58 Identities=28% Similarity=0.372 Sum_probs=36.1
Q ss_pred eeEEEEcCCCCCCccccccCCee-----eEEEeeCCceeccceEE--ecccccccccccccccccceecCCCceEEEecC
Q 024926 117 GFVVEYGMDRDVELGFHVDDSEV-----TLNVCLGREFSGGELFF--RGVRCDKHVNTETQSEEILDYSHVPGYAVLHRG 189 (260)
Q Consensus 117 ~FvvrY~~~~d~~l~~H~D~S~~-----TlnV~L~~dfeGG~l~F--~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh~g 189 (260)
..+-.|.+| ..+++|.|..+. -+.|+|+.. ..| .+.+- ......+....|+.|+-.|
T Consensus 108 ~Lvn~Y~pG--d~ig~HqD~~e~~~~~~v~slSLg~~-----~~F~~~~~~r---------~~~~~~~~L~~Gdvvvm~G 171 (194)
T COG3145 108 VLVNRYRPG--ASIGWHQDKDEEDDRPPVASLSLGAP-----CIFRLRGRRR---------RGPGLRLRLEHGDVVVMGG 171 (194)
T ss_pred eeEEeccCC--CccccccccccccCCCceEEEecCCC-----eEEEeccccC---------CCCceeEEecCCCEEEecC
Confidence 446789998 489999997642 245566532 222 22111 1122345778899999999
Q ss_pred C
Q 024926 190 R 190 (260)
Q Consensus 190 ~ 190 (260)
.
T Consensus 172 ~ 172 (194)
T COG3145 172 P 172 (194)
T ss_pred C
Confidence 8
No 94
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=25.75 E-value=59 Score=32.77 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=36.8
Q ss_pred cceecCCCceEEEecCCCCcCcc------ccCccceeEEEeeccchhhh
Q 024926 174 ILDYSHVPGYAVLHRGRHRHGAR------ATTSGSRVNLLVWCRSSVFR 216 (260)
Q Consensus 174 ~~~~~~~~G~avlh~g~~~H~~~------pVTsG~Ry~Lv~w~rss~~R 216 (260)
+-.+..+.|++|+||--..|.+. ++-.|.|-+|.+|+-.+..|
T Consensus 434 ~Gsv~~~~gr~i~fPN~~qhrv~~f~L~D~tkpGhrkil~lfLvDP~~~ 482 (501)
T PF14033_consen 434 LGSVETKEGRLIAFPNTLQHRVSPFELADPTKPGHRKILALFLVDPHIR 482 (501)
T ss_pred cCcEEccCCcEEeccchhhhccCCccccCCCCCCcEEEEEEEecCCCCc
Confidence 33557789999999999888876 56799999999999999877
No 95
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=25.72 E-value=81 Score=28.69 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHhhhhhhhhhCCCc-C-----CCCCCccceeEEEEcCCCCCCccccccCCeeeEEEee-----C-Ccee
Q 024926 83 GLETMLDKLMNDFIRPISKVFFPEV-G-----GSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCL-----G-REFS 150 (260)
Q Consensus 83 gl~~~~~~l~~~~l~Pl~~~lfp~~-~-----~~~Lds~~~FvvrY~~~~d~~l~~H~D~S~~TlnV~L-----~-~dfe 150 (260)
.+-..|+.|..+||-|+.+.+..+. . +......-+.|| |+.. |..-.+=.+-+.+|-++.. . =+|.
T Consensus 25 algpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVv-f~t~-d~~~~~~v~~~g~T~~~~~fl~~L~~I~f~ 102 (226)
T PF11265_consen 25 ALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVV-FNTA-DCYPEPIVQRSGPTSSPQKFLQWLDAIQFS 102 (226)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEE-Eecc-CCCcccceeccCCcCCHHHHHHHHHccCcC
Confidence 4558999999999999998877421 1 111123344344 4432 1233333334455555543 2 4799
Q ss_pred ccceE
Q 024926 151 GGELF 155 (260)
Q Consensus 151 GG~l~ 155 (260)
||+..
T Consensus 103 GGG~e 107 (226)
T PF11265_consen 103 GGGFE 107 (226)
T ss_pred CCCcc
Confidence 88754
No 96
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=26 Score=27.77 Aligned_cols=9 Identities=33% Similarity=1.505 Sum_probs=7.4
Q ss_pred ccccchhhh
Q 024926 226 SSWCAECQR 234 (260)
Q Consensus 226 ~~~c~~c~~ 234 (260)
+.|||-|.+
T Consensus 30 a~wCgPCk~ 38 (106)
T KOG0907|consen 30 ATWCGPCKA 38 (106)
T ss_pred CCCCcchhh
Confidence 489999965
No 97
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=25.41 E-value=46 Score=25.37 Aligned_cols=22 Identities=32% Similarity=0.800 Sum_probs=14.7
Q ss_pred ccceeEEEeeccchhhhhhHhhhhhcccccchhhhhh
Q 024926 200 SGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREK 236 (260)
Q Consensus 200 sG~Ry~Lv~w~rss~~R~~~~~~~~~~~~c~~c~~~~ 236 (260)
.| ++.+|.|..+ .||+.|..+-
T Consensus 24 ~g-k~~vl~f~~~--------------~~c~~c~~~l 45 (124)
T PF00578_consen 24 KG-KPVVLFFWPT--------------AWCPFCQAEL 45 (124)
T ss_dssp TT-SEEEEEEEST--------------TTSHHHHHHH
T ss_pred CC-CcEEEEEeCc--------------cCccccccch
Confidence 55 6777777443 4899996443
No 98
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.15 E-value=2.4e+02 Score=25.41 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=53.1
Q ss_pred ceeEEEEcCCCC---CCccccccCCeeeEEEeeC-CceeccceEEecccccccccccccccccceecCCCceEEEe-cCC
Q 024926 116 HGFVVEYGMDRD---VELGFHVDDSEVTLNVCLG-REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLH-RGR 190 (260)
Q Consensus 116 ~~FvvrY~~~~d---~~l~~H~D~S~~TlnV~L~-~dfeGG~l~F~~~~~~~~v~~~~~~~~~~~~~~~~G~avlh-~g~ 190 (260)
|.|-+.-..+++ ..=+.|.|..++-.-+... ..-.||++-.+-..... -.+.--..+|.+++= -++
T Consensus 121 HQ~Ri~a~~de~glpaPEG~HqDG~D~I~I~~vDR~NI~gGet~lY~~~~~~---------p~f~kvl~pGe~~~l~Dh~ 191 (226)
T COG4340 121 HQFRIEARTDEQGLPAPEGAHQDGVDWIIIMLVDRQNIDGGETDLYAPDGAS---------PGFFKVLAPGEAVFLDDHR 191 (226)
T ss_pred EEEEEEeecCCcCCCCCccccccCccEEEEEEeeeccccCceEEEEccCCCC---------cceEEeccCCcEEEeccch
Confidence 445454555554 2357899999987777665 56889999887543221 112224678887654 466
Q ss_pred CCcCccccC---ccceeEEEeec
Q 024926 191 HRHGARATT---SGSRVNLLVWC 210 (260)
Q Consensus 191 ~~H~~~pVT---sG~Ry~Lv~w~ 210 (260)
.+|++.|+. +-+|=++-.|.
T Consensus 192 ~~H~~tpi~p~t~~q~g~mdvfv 214 (226)
T COG4340 192 VLHGVTPIVPSTSRQRGAMDVFV 214 (226)
T ss_pred hcccccceeccchhhccceeEEE
Confidence 999998864 33344444443
No 99
>PRK09381 trxA thioredoxin; Provisional
Probab=24.89 E-value=27 Score=26.47 Aligned_cols=11 Identities=27% Similarity=1.066 Sum_probs=8.1
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.|||.|....
T Consensus 30 ~~~C~~C~~~~ 40 (109)
T PRK09381 30 AEWCGPCKMIA 40 (109)
T ss_pred CCCCHHHHHHh
Confidence 46999996543
No 100
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=24.81 E-value=32 Score=25.61 Aligned_cols=11 Identities=36% Similarity=1.268 Sum_probs=8.0
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.||+-|....
T Consensus 25 a~wC~~C~~~~ 35 (101)
T cd02994 25 APWCPACQQLQ 35 (101)
T ss_pred CCCCHHHHHHh
Confidence 36999996543
No 101
>PHA02125 thioredoxin-like protein
Probab=24.78 E-value=28 Score=25.14 Aligned_cols=12 Identities=42% Similarity=1.174 Sum_probs=8.8
Q ss_pred ccccchhhhhhh
Q 024926 226 SSWCAECQREKK 237 (260)
Q Consensus 226 ~~~c~~c~~~~~ 237 (260)
+.|||-|.+-+.
T Consensus 7 a~wC~~Ck~~~~ 18 (75)
T PHA02125 7 AEWCANCKMVKP 18 (75)
T ss_pred CCCCHhHHHHHH
Confidence 589999975433
No 102
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=24.77 E-value=44 Score=26.31 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=7.0
Q ss_pred cccchhhhh
Q 024926 227 SWCAECQRE 235 (260)
Q Consensus 227 ~~c~~c~~~ 235 (260)
.|||.|..+
T Consensus 34 ~~Cp~C~~~ 42 (149)
T cd02970 34 FGCPFCREY 42 (149)
T ss_pred CCChhHHHH
Confidence 589999654
No 103
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=24.61 E-value=33 Score=25.64 Aligned_cols=10 Identities=30% Similarity=0.787 Sum_probs=7.8
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+.|.+-
T Consensus 27 a~wC~~C~~~ 36 (101)
T cd03003 27 SPRCSHCHDL 36 (101)
T ss_pred CCCChHHHHh
Confidence 4799999754
No 104
>PF09864 MliC: Membrane-bound lysozyme-inhibitor of c-type lysozyme; InterPro: IPR018660 This entry contains proteins that represent a novel family of bacterial lysozyme inhibitors with widespread homologues in Gram-negative bacteria, that may function as colonization or virulence factors in bacteria interacting with an animal host []. ; PDB: 3OE3_F 2F09_A 3F6Z_D.
Probab=24.58 E-value=1.3e+02 Score=21.59 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=33.5
Q ss_pred ceeEEEEcCCCCCCccccccCCeeeEEEeeC---CceeccceEEecc
Q 024926 116 HGFVVEYGMDRDVELGFHVDDSEVTLNVCLG---REFSGGELFFRGV 159 (260)
Q Consensus 116 ~~FvvrY~~~~d~~l~~H~D~S~~TlnV~L~---~dfeGG~l~F~~~ 159 (260)
..|.|+|....+.....-+++.+++|....+ .-|++|++.|..-
T Consensus 7 ~~i~v~~~~~~~~~a~l~~~~~~~~L~~~~SaSGarY~~~~~~~w~k 53 (72)
T PF09864_consen 7 QRISVTYINDDDPSAVLRYDDQEYTLPQAPSASGARYSNGGYEFWTK 53 (72)
T ss_dssp CEEEEEEEECTTEEEEEECCTEEEEEEEECTSSSEEEECCTEEEEEE
T ss_pred CEEEEEEcCCCCcEEEEEECCEEEEEEEeecCCCCcEeCCCEEEEEE
Confidence 4578899887765466677777788887774 5799999999853
No 105
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=24.32 E-value=33 Score=26.77 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=8.2
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.||+-|....
T Consensus 23 a~wC~~C~~~~ 33 (125)
T cd02951 23 QPGCPYCDKLK 33 (125)
T ss_pred CCCCHHHHHHH
Confidence 37999997543
No 106
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=24.07 E-value=33 Score=25.19 Aligned_cols=10 Identities=30% Similarity=1.255 Sum_probs=7.7
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+.|..-
T Consensus 27 ~~~C~~C~~~ 36 (104)
T cd02995 27 APWCGHCKAL 36 (104)
T ss_pred CCCCHHHHHH
Confidence 4799999653
No 107
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=24.00 E-value=29 Score=26.38 Aligned_cols=10 Identities=30% Similarity=1.218 Sum_probs=7.9
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+-|...
T Consensus 26 a~wC~~Ck~~ 35 (102)
T cd02948 26 QEWCGPCKAV 35 (102)
T ss_pred CCcCHhHHHH
Confidence 5899999644
No 108
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=23.69 E-value=33 Score=25.89 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=7.5
Q ss_pred cccchhhhhhhH
Q 024926 227 SWCAECQREKKE 238 (260)
Q Consensus 227 ~~c~~c~~~~~~ 238 (260)
.|||.|.+-.++
T Consensus 15 ~~C~~C~~~~~~ 26 (112)
T PF13098_consen 15 PWCPYCKKLEKE 26 (112)
T ss_dssp TT-HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 689999754443
No 109
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=23.65 E-value=34 Score=24.31 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=11.8
Q ss_pred ccccchhhhhhhHHHH
Q 024926 226 SSWCAECQREKKERQC 241 (260)
Q Consensus 226 ~~~c~~c~~~~~~~~~ 241 (260)
..|||.|.+-+..-+.
T Consensus 6 ~~~Cp~C~~~~~~L~~ 21 (84)
T TIGR02180 6 KSYCPYCKKAKEILAK 21 (84)
T ss_pred CCCChhHHHHHHHHHH
Confidence 4899999877765443
No 110
>PHA02278 thioredoxin-like protein
Probab=23.41 E-value=30 Score=27.02 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.3
Q ss_pred cccccchhhhh
Q 024926 225 CSSWCAECQRE 235 (260)
Q Consensus 225 ~~~~c~~c~~~ 235 (260)
++.|||-|.+-
T Consensus 22 ~A~WCgpCk~m 32 (103)
T PHA02278 22 TQDNCGKCEIL 32 (103)
T ss_pred ECCCCHHHHhH
Confidence 45899999743
No 111
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=23.20 E-value=42 Score=27.38 Aligned_cols=8 Identities=50% Similarity=1.676 Sum_probs=6.9
Q ss_pred cccchhhh
Q 024926 227 SWCAECQR 234 (260)
Q Consensus 227 ~~c~~c~~ 234 (260)
+|||.|..
T Consensus 36 sWCPDC~~ 43 (119)
T PF06110_consen 36 SWCPDCVA 43 (119)
T ss_dssp BSSHHHHH
T ss_pred cccHHHHH
Confidence 99999954
No 112
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=22.99 E-value=35 Score=25.49 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.1
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.||+.|....
T Consensus 22 a~~C~~C~~~~ 32 (97)
T cd02949 22 SPTCGPCRTLK 32 (97)
T ss_pred CCCChhHHHHH
Confidence 37999996543
No 113
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=22.95 E-value=31 Score=27.64 Aligned_cols=9 Identities=22% Similarity=0.785 Sum_probs=7.5
Q ss_pred ccccchhhh
Q 024926 226 SSWCAECQR 234 (260)
Q Consensus 226 ~~~c~~c~~ 234 (260)
.+|||-|.+
T Consensus 32 ~~~Cp~C~~ 40 (122)
T TIGR01295 32 RKTCPYCRK 40 (122)
T ss_pred CCCChhHHH
Confidence 479999976
No 114
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=22.82 E-value=36 Score=23.41 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=8.1
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.|||-|.+-+
T Consensus 8 ~~~C~~C~~~~ 18 (67)
T cd02973 8 SPTCPYCPDAV 18 (67)
T ss_pred CCCCCCcHHHH
Confidence 57999995543
No 115
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=22.76 E-value=1.3e+02 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=27.9
Q ss_pred cceecCCCceEEEecCCCCcCccccCccceeEEEeeccchhhhhh
Q 024926 174 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFREL 218 (260)
Q Consensus 174 ~~~~~~~~G~avlh~g~~~H~~~pVTsG~Ry~Lv~w~rss~~R~~ 218 (260)
..++...||++|.-|-+..|.|.++. .-..+.+.++...+.++
T Consensus 175 ~~~~~L~pGD~LYlPrG~~H~~~~~~--~S~hltv~~~~~t~~dl 217 (319)
T PF08007_consen 175 VEEVVLEPGDVLYLPRGWWHQAVTTD--PSLHLTVGFRAPTWADL 217 (319)
T ss_dssp SEEEEE-TT-EEEE-TT-EEEEEESS---EEEEEEEECCEBHHHH
T ss_pred eEEEEECCCCEEEECCCccCCCCCCC--CceEEEEeeeCCchhhH
Confidence 44677899999999999999998887 44455455666656653
No 116
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=22.41 E-value=32 Score=25.33 Aligned_cols=11 Identities=36% Similarity=1.362 Sum_probs=8.1
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
++||+.|....
T Consensus 26 a~wC~~C~~~~ 36 (104)
T cd02997 26 APWCGHCKKMK 36 (104)
T ss_pred CCCCHHHHHhC
Confidence 46999996553
No 117
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=22.31 E-value=38 Score=24.65 Aligned_cols=12 Identities=33% Similarity=1.287 Sum_probs=8.8
Q ss_pred cccchhhhhhhH
Q 024926 227 SWCAECQREKKE 238 (260)
Q Consensus 227 ~~c~~c~~~~~~ 238 (260)
.||+-|..-++.
T Consensus 27 ~wC~~C~~l~~~ 38 (82)
T PF13899_consen 27 DWCPPCKKLERE 38 (82)
T ss_dssp TTTHHHHHHHHH
T ss_pred CCCHhHHHHHHH
Confidence 799999665443
No 118
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=22.06 E-value=39 Score=22.90 Aligned_cols=12 Identities=33% Similarity=1.318 Sum_probs=9.0
Q ss_pred ccccchhhhhhh
Q 024926 226 SSWCAECQREKK 237 (260)
Q Consensus 226 ~~~c~~c~~~~~ 237 (260)
+.|||.|.+-++
T Consensus 7 ~~~C~~C~~~~~ 18 (74)
T TIGR02196 7 TPWCPPCKKAKE 18 (74)
T ss_pred CCCChhHHHHHH
Confidence 489999976544
No 119
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=21.92 E-value=31 Score=25.92 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=7.9
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|.+-.
T Consensus 21 ~wC~~C~~~~ 30 (104)
T cd02953 21 DWCVTCKVNE 30 (104)
T ss_pred chhHHHHHHH
Confidence 7899997654
No 120
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=21.70 E-value=34 Score=29.91 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=7.6
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
.+|||-|..+
T Consensus 78 aswCp~C~~e 87 (181)
T PRK13728 78 QGHCPYCHQF 87 (181)
T ss_pred CCCCHhHHHH
Confidence 3789999554
No 121
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=21.67 E-value=1.3e+02 Score=28.48 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=39.8
Q ss_pred cccceecCCCceEEEecCC-CCcCccccC--ccceeEEEeeccchhhhhhH
Q 024926 172 EEILDYSHVPGYAVLHRGR-HRHGARATT--SGSRVNLLVWCRSSVFRELK 219 (260)
Q Consensus 172 ~~~~~~~~~~G~avlh~g~-~~H~~~pVT--sG~Ry~Lv~w~rss~~R~~~ 219 (260)
+-.+.++-++|+.||+--+ .+|+..+-+ .|.|...-.++--..|+...
T Consensus 311 ~~~~~~~l~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~Y~d~d~~~sr~ 361 (366)
T TIGR02409 311 RFKFTFKLEPGDLVLFDNTRLLHARDAFSNPEGKRHLQGCYADWDGLLSRL 361 (366)
T ss_pred ccEEEEEcCCCcEEEEeceEEeecCCCcCCCCCceEEEEEEEccHHHHHHH
Confidence 4455778899999999988 999999886 79999999998888777643
No 122
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=21.65 E-value=40 Score=25.77 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=8.4
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.||+-|.+..
T Consensus 27 a~WC~~C~~~~ 37 (100)
T cd02999 27 ASWCPFSASFR 37 (100)
T ss_pred CCCCHHHHhHh
Confidence 47999997554
No 123
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=21.39 E-value=35 Score=27.82 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=6.1
Q ss_pred cccchhhhh
Q 024926 227 SWCAECQRE 235 (260)
Q Consensus 227 ~~c~~c~~~ 235 (260)
+||| |..+
T Consensus 32 twC~-C~~e 39 (152)
T cd00340 32 SKCG-FTPQ 39 (152)
T ss_pred CCCC-chHH
Confidence 7999 9544
No 124
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=21.32 E-value=35 Score=25.57 Aligned_cols=11 Identities=36% Similarity=1.265 Sum_probs=8.0
Q ss_pred ccccchhhhhh
Q 024926 226 SSWCAECQREK 236 (260)
Q Consensus 226 ~~~c~~c~~~~ 236 (260)
+.||+.|..-.
T Consensus 27 a~wC~~C~~~~ 37 (109)
T cd03002 27 APWCGHCKNLK 37 (109)
T ss_pred CCCCHHHHhhC
Confidence 36999997543
No 125
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=21.14 E-value=43 Score=26.53 Aligned_cols=10 Identities=40% Similarity=1.208 Sum_probs=8.0
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|..+-
T Consensus 27 twC~~C~~~~ 36 (132)
T cd02964 27 SWCPPCRAFT 36 (132)
T ss_pred CCCchHHHHH
Confidence 7999997653
No 126
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=21.03 E-value=41 Score=24.76 Aligned_cols=10 Identities=30% Similarity=1.235 Sum_probs=7.7
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|..-.
T Consensus 28 ~~C~~C~~~~ 37 (103)
T cd03001 28 PWCGHCKNLA 37 (103)
T ss_pred CCCHHHHHHh
Confidence 6899997643
No 127
>KOG3848 consensus Extracellular protein TEM7, contains PSI domain (tumor endothelial marker in humans) [Extracellular structures]
Probab=20.88 E-value=3.8e+02 Score=26.91 Aligned_cols=60 Identities=22% Similarity=0.427 Sum_probs=40.3
Q ss_pred HHhhhhhhhhhCCCcCCCC----CCccceeEEEEcCCCCCCccccccCCeeeEEEeeCCceeccceEEec
Q 024926 93 NDFIRPISKVFFPEVGGST----LDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRG 158 (260)
Q Consensus 93 ~~~l~Pl~~~lfp~~~~~~----Lds~~~FvvrY~~~~d~~l~~H~D~S~~TlnV~L~~dfeGG~l~F~~ 158 (260)
-+||+||.+.+-|.+...+ +|.--.|||.++-= .|.--.|-..||+.+.|-++ |.+.|.-
T Consensus 187 TQYIAPLMANFdts~snnS~V~y~DnGtafvvqWdnV---~Lqd~~d~gsFTFqatL~~d---GdIVFaY 250 (516)
T KOG3848|consen 187 TQYIAPLMANFDTSYSNNSTVVYFDNGTAFVVQWDNV---QLQDDKDEGSFTFQATLHKD---GDIVFAY 250 (516)
T ss_pred HHHHhHHhhcCCccccCCceEEEecCCeEEEEEeeeE---EeccCCCCCcEEEEEEeccC---CcEEEEE
Confidence 3699999998877665432 23335667766532 45555667779999988554 8888874
No 128
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=20.61 E-value=73 Score=22.60 Aligned_cols=10 Identities=30% Similarity=1.205 Sum_probs=7.3
Q ss_pred cccchhhhhh
Q 024926 227 SWCAECQREK 236 (260)
Q Consensus 227 ~~c~~c~~~~ 236 (260)
.||+.|..-.
T Consensus 25 ~~C~~C~~~~ 34 (101)
T cd02961 25 PWCGHCKALA 34 (101)
T ss_pred CCCHHHHhhh
Confidence 5899996543
No 129
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=20.42 E-value=2e+02 Score=26.33 Aligned_cols=87 Identities=13% Similarity=0.296 Sum_probs=41.8
Q ss_pred CCChhHHHHcccc-cHHHHHhhhcccCCeEEE--ecCCCHHHHHHHHHHHHhcc--cccccCCccc---cccCCCCccce
Q 024926 6 VLVPAFVKAVRDN-TEASFRSIMAEPIPGIYT--FEMLQPRFCEMLLSEVENFE--RWVHDTRFRI---MRPNTMNKFGA 77 (260)
Q Consensus 6 ~~~p~f~~~i~~~-~~~~~~~~~~e~~p~Vy~--fpvft~~fC~~LI~e~e~f~--~w~~~s~~~~---~rpn~mn~ygv 77 (260)
+++|+|=.--... -.+.+...+.--.-|||. .|+++.+..+.+++.+.+-+ ++-. ..+.+ ..+..|+..|.
T Consensus 130 LIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~-~El~v~~~~~~~gm~GSGm 208 (245)
T PF04378_consen 130 LIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKVLR-AELRVRPPDSPRGMNGSGM 208 (245)
T ss_dssp EE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-EE-EEEE---SS---S--EEEE
T ss_pred EECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCeEE-EEEEecCCCCcCceecceE
Confidence 3556554333322 224444444444456665 49999999999999888643 1111 11211 22456888887
Q ss_pred eeccc--chhHHHHHHHH
Q 024926 78 VLDDF--GLETMLDKLMN 93 (260)
Q Consensus 78 vldd~--gl~~~~~~l~~ 93 (260)
++-.+ +|+..+..++.
T Consensus 209 ~iiNPPw~l~~~l~~~l~ 226 (245)
T PF04378_consen 209 LIINPPWTLDEELEEILP 226 (245)
T ss_dssp EEES--TTHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHH
Confidence 64443 66666655554
No 130
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=20.01 E-value=38 Score=24.67 Aligned_cols=10 Identities=30% Similarity=1.182 Sum_probs=7.3
Q ss_pred ccccchhhhh
Q 024926 226 SSWCAECQRE 235 (260)
Q Consensus 226 ~~~c~~c~~~ 235 (260)
+.||+.|..-
T Consensus 26 ~~~C~~C~~~ 35 (103)
T PF00085_consen 26 APWCPPCKAF 35 (103)
T ss_dssp STTSHHHHHH
T ss_pred CCCCCccccc
Confidence 3689999553
Done!