Citrus Sinensis ID: 024928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKQNAKPGLENC
ccccEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEcccccccccccccEEccccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEEEEEEEcccEEEEccccEEEEccEEEEEcEEEEccccEEEEccEEEEEEccEEEEcccccccccEEEEEEccEEEEccccccEEEccccccccEEEEEcccccccccccccccccccccccccccc
cccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccccEEEcccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccEEEEccccccccccEEEEEccEEEccccccccccccccHHcccEEEEEEcccccccccccccccccccHHHcccc
MASCVVTVaqdgtgdyrTVQEAidrvplcntrrtlirispgvyrqpvyvpktknlitlaglcpentvltWNNTATKIEHHQAARVigtgtfgcgsvivegedfvaenitfensapegsgqAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIhcksqgfitaqsrkssqettGYVFLRCVItgnggtgyiylgrpwgpfgRVVFAFTYMDQCirhvgwhnwgkqnakpglenc
MASCVVTVaqdgtgdyrtvqeaidrvplcntrrtlirispgvyrqpvyvPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITfensapegsgqAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWhnwgkqnakpglenc
MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKQNAKPGLENC
***CVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQ******ETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWG***********
*ASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKQNA*******
MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG************TTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKQNAKPGLENC
**SCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKQNAKPGLENC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKQNAKPGLENC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q9LVQ0317 Pectinesterase 31 OS=Arab yes no 0.946 0.776 0.865 1e-127
Q8VYZ3383 Probable pectinesterase 5 no no 0.896 0.608 0.477 3e-60
Q8LPF3362 Probable pectinesterase 6 no no 0.953 0.685 0.386 1e-47
Q9SIJ9352 Putative pectinesterase 1 no no 0.880 0.650 0.394 2e-47
O23038393 Probable pectinesterase 8 no no 0.876 0.580 0.417 4e-47
Q9ZQA3407 Probable pectinesterase 1 no no 0.9 0.574 0.401 1e-46
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.911 0.623 0.420 2e-46
Q9LY17361 Probable pectinesterase 5 no no 0.888 0.639 0.42 5e-46
Q9ZQA4333 Putative pectinesterase 1 no no 0.9 0.702 0.390 2e-45
Q9FJ21571 Probable pectinesterase/p no no 0.888 0.404 0.408 1e-44
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function desciption
 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/246 (86%), Positives = 232/246 (94%)

Query: 5   VVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPE 64
           +V V+QDG+GDY +VQ+AID VPL NT RT+IR+SPG+YRQPVYVPK KN IT AG+ PE
Sbjct: 6   MVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPE 65

Query: 65  NTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAI 124
            TVLTWNNTA+KIEHHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENSAPEGSGQAVAI
Sbjct: 66  ITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAI 125

Query: 125 RVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ 184
           RVTADRCAFYNCRFLGWQDTLYLH+GKQYLKDCYIEGSVDFIFGNSTAL+EHCHIHCKSQ
Sbjct: 126 RVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQ 185

Query: 185 GFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVG 244
           GFITAQSRKSSQE+TGYVFLRCVITGNG +GY+YLGRPWGPFGRVV A+TYMD CIR+VG
Sbjct: 186 GFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVG 245

Query: 245 WHNWGK 250
           WHNWG 
Sbjct: 246 WHNWGN 251
Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
255578282316 Pectinesterase precursor, putative [Rici 0.961 0.791 0.896 1e-133
224077586316 predicted protein [Populus trichocarpa] 0.961 0.791 0.888 1e-131
388503334316 unknown [Lotus japonicus] 0.961 0.791 0.888 1e-131
356531740316 PREDICTED: pectinesterase 31-like [Glyci 0.969 0.797 0.880 1e-131
225452889316 PREDICTED: pectinesterase 31 [Vitis vini 0.961 0.791 0.88 1e-130
357502011316 Pectinesterase [Medicago truncatula] gi| 0.961 0.791 0.852 1e-126
18406048317 pectinesterase 31 [Arabidopsis thaliana] 0.946 0.776 0.865 1e-125
297815216317 pectinesterase family protein [Arabidops 0.946 0.776 0.865 1e-125
356568690316 PREDICTED: pectinesterase 31-like [Glyci 0.969 0.797 0.876 1e-124
356550929316 PREDICTED: pectinesterase 31-like [Glyci 0.976 0.803 0.819 1e-122
>gi|255578282|ref|XP_002530008.1| Pectinesterase precursor, putative [Ricinus communis] gi|223530487|gb|EEF32370.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/250 (89%), Positives = 242/250 (96%)

Query: 1   MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAG 60
           MA  V+TVAQDG+G+YRTVQEAID VPLCNT RT+IR++PG+YRQPVYVPKTKNLITLAG
Sbjct: 1   MACRVLTVAQDGSGNYRTVQEAIDAVPLCNTGRTVIRVAPGIYRQPVYVPKTKNLITLAG 60

Query: 61  LCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQ 120
           L PENTVLTW+NTATKI+HHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENS+PEGSGQ
Sbjct: 61  LNPENTVLTWDNTATKIDHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSSPEGSGQ 120

Query: 121 AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIH 180
           AVA+RVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTAL+EHCHIH
Sbjct: 121 AVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIH 180

Query: 181 CKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCI 240
           CKS GFITAQSRKSSQE+TGYVFLRCVITGNGGT Y YLGRPWGPFGRVVFA+TYMDQC+
Sbjct: 181 CKSAGFITAQSRKSSQESTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVVFAYTYMDQCV 240

Query: 241 RHVGWHNWGK 250
           RHVGW+NWGK
Sbjct: 241 RHVGWNNWGK 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077586|ref|XP_002305315.1| predicted protein [Populus trichocarpa] gi|222848279|gb|EEE85826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388503334|gb|AFK39733.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356531740|ref|XP_003534434.1| PREDICTED: pectinesterase 31-like [Glycine max] Back     alignment and taxonomy information
>gi|225452889|ref|XP_002283941.1| PREDICTED: pectinesterase 31 [Vitis vinifera] gi|296082952|emb|CBI22253.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357502011|ref|XP_003621294.1| Pectinesterase [Medicago truncatula] gi|124360252|gb|ABN08265.1| Pectinesterase [Medicago truncatula] gi|355496309|gb|AES77512.1| Pectinesterase [Medicago truncatula] gi|388508186|gb|AFK42159.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18406048|ref|NP_566842.1| pectinesterase 31 [Arabidopsis thaliana] gi|75311628|sp|Q9LVQ0.1|PME31_ARATH RecName: Full=Pectinesterase 31; Short=PE 31; AltName: Full=Pectin methylesterase 31; Short=AtPME31 gi|9294028|dbj|BAB01985.1| pectin methylesterase-like protein [Arabidopsis thaliana] gi|17979179|gb|AAL49785.1| putative pectinesterase [Arabidopsis thaliana] gi|20465979|gb|AAM20211.1| putative pectinesterase [Arabidopsis thaliana] gi|21536660|gb|AAM60992.1| putative pectinesterase [Arabidopsis thaliana] gi|332644013|gb|AEE77534.1| pectinesterase 31 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297815216|ref|XP_002875491.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297321329|gb|EFH51750.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356568690|ref|XP_003552543.1| PREDICTED: pectinesterase 31-like [Glycine max] Back     alignment and taxonomy information
>gi|356550929|ref|XP_003543834.1| PREDICTED: pectinesterase 31-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2094652317 PME31 "pectin methylesterase 3 0.976 0.801 0.843 9.5e-121
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.923 0.626 0.482 2.2e-57
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.953 0.685 0.394 3e-46
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.873 0.644 0.397 4.4e-45
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.876 0.580 0.421 1.9e-44
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.876 0.631 0.421 1.9e-44
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.911 0.623 0.420 1.9e-44
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.9 0.574 0.401 7.3e-43
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.892 0.696 0.397 7.3e-43
TAIR|locus:2155884571 AT5G49180 [Arabidopsis thalian 0.884 0.402 0.406 6.6e-42
TAIR|locus:2094652 PME31 "pectin methylesterase 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 216/256 (84%), Positives = 236/256 (92%)

Query:     5 VVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPE 64
             +V V+QDG+GDY +VQ+AID VPL NT RT+IR+SPG+YRQPVYVPK KN IT AG+ PE
Sbjct:     6 MVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPE 65

Query:    65 NTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAI 124
              TVLTWNNTA+KIEHHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENSAPEGSGQAVAI
Sbjct:    66 ITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAI 125

Query:   125 RVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ 184
             RVTADRCAFYNCRFLGWQDTLYLH+GKQYLKDCYIEGSVDFIFGNSTAL+EHCHIHCKSQ
Sbjct:   126 RVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQ 185

Query:   185 GFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVG 244
             GFITAQSRKSSQE+TGYVFLRCVITGNG +GY+YLGRPWGPFGRVV A+TYMD CIR+VG
Sbjct:   186 GFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVG 245

Query:   245 WHNWGKQNAKPGLENC 260
             WHNWG  NA+     C
Sbjct:   246 WHNWG--NAENERSAC 259
GO:0005618 "cell wall" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IDA
GO:0042545 "cell wall modification" evidence=IEA
GO:0045488 "pectin metabolic process" evidence=IDA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155884 AT5G49180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVQ0PME31_ARATH3, ., 1, ., 1, ., 1, 10.86580.94610.7760yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.991
3rd Layer3.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV0964
pectinesterase family protein (EC-3.1.1.11) (316 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.926
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.923
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.923
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.922
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.921
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.918
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.916
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.916
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.915
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.915

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
PLN02773317 PLN02773, PLN02773, pectinesterase 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-91
PLN02432293 PLN02432, PLN02432, putative pectinesterase 4e-83
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 2e-81
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-77
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-68
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-66
PLN02634359 PLN02634, PLN02634, probable pectinesterase 4e-65
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 8e-56
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-55
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-55
PLN02314586 PLN02314, PLN02314, pectinesterase 7e-54
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 8e-54
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-53
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-53
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 3e-53
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 6e-52
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 6e-52
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-50
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 2e-50
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-49
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 2e-49
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 4e-49
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 2e-48
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 2e-48
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 2e-48
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-46
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 5e-46
PLN02197588 PLN02197, PLN02197, pectinesterase 7e-46
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-45
PLN02176340 PLN02176, PLN02176, putative pectinesterase 4e-43
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-40
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 3e-36
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-33
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information 
 Score =  527 bits (1359), Expect = 0.0
 Identities = 221/250 (88%), Positives = 238/250 (95%)

Query: 1   MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAG 60
           MA  V+ VAQDG+GDY TVQ+AID VPLCN  RT+IR++PGVYRQPVYVPKTKNLITLAG
Sbjct: 2   MARRVLRVAQDGSGDYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQPVYVPKTKNLITLAG 61

Query: 61  LCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQ 120
           L PE TVLTWNNTATKI+HHQA+RVIGTGTFGCG+VIVEGEDF+AENITFENSAPEGSGQ
Sbjct: 62  LSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQ 121

Query: 121 AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIH 180
           AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYL+DCYIEGSVDFIFGNSTAL+EHCHIH
Sbjct: 122 AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALLEHCHIH 181

Query: 181 CKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCI 240
           CKS GFITAQSRKSSQE+TGYVFLRCVITGNGG+GY+YLGRPWGPFGRVVFA+TYMD CI
Sbjct: 182 CKSAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPWGPFGRVVFAYTYMDACI 241

Query: 241 RHVGWHNWGK 250
           R VGW+NWGK
Sbjct: 242 RPVGWNNWGK 251

Length = 317
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
PLN02773317 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02432293 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.6
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 99.06
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.9
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.9
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.65
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.42
KOG1777 625 consensus Putative Zn-finger protein [General func 98.17
PLN02793443 Probable polygalacturonase 97.49
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.41
PLN03010409 polygalacturonase 97.21
PLN02155394 polygalacturonase 97.1
PLN02218431 polygalacturonase ADPG 97.08
PLN03003 456 Probable polygalacturonase At3g15720 97.07
PLN02773317 pectinesterase 96.96
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.96
PLN02480343 Probable pectinesterase 96.95
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.89
PLN02432293 putative pectinesterase 96.66
PLN02497331 probable pectinesterase 96.63
PLN02176340 putative pectinesterase 96.56
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.49
PLN02671359 pectinesterase 96.4
PLN02634359 probable pectinesterase 96.28
PRK10531422 acyl-CoA thioesterase; Provisional 96.24
PLN02682369 pectinesterase family protein 96.19
PLN02304379 probable pectinesterase 96.12
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.88
PLN02665366 pectinesterase family protein 95.83
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.72
smart00656190 Amb_all Amb_all domain. 95.63
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.55
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.54
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.52
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.45
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.42
PLN02916502 pectinesterase family protein 95.4
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.36
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.32
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.27
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.25
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.19
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.06
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.04
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.94
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.89
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.89
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.69
PLN02197588 pectinesterase 94.67
PLN02314586 pectinesterase 94.62
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.46
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 94.31
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.3
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.29
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.23
PLN02301548 pectinesterase/pectinesterase inhibitor 94.11
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 93.8
PLN02188404 polygalacturonase/glycoside hydrolase family prote 93.75
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 91.84
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.02
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 90.68
PLN02218431 polygalacturonase ADPG 89.37
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 89.02
PLN02793443 Probable polygalacturonase 88.14
PLN02155394 polygalacturonase 86.0
PLN03010409 polygalacturonase 82.32
PLN03003 456 Probable polygalacturonase At3g15720 81.29
smart00722146 CASH Domain present in carbohydrate binding protei 81.16
>PLN02773 pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=9.9e-83  Score=576.88  Aligned_cols=256  Identities=86%  Similarity=1.473  Sum_probs=236.8

Q ss_pred             CCcceEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCcEEeeeeeecCCcccEEEeccCCCCeEEEeCCCcceeecc
Q 024928            1 MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHH   80 (260)
Q Consensus         1 ~~~~~i~V~~~g~g~y~TIq~Al~a~~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~~~~~t~I~~~~~~~~~~~~   80 (260)
                      |..++|+|+++|+|+|+|||+||+++|.++.+|++|+|+||+|+|+|+|++.|++|||+|+++++|+|+|++.+..+.++
T Consensus         2 ~~~~~i~Va~dGsGdf~TIq~Aida~P~~~~~~~~I~Ik~G~Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~   81 (317)
T PLN02773          2 MARRVLRVAQDGSGDYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHH   81 (317)
T ss_pred             CcceEEEECCCCCCCccCHHHHHhhchhcCCceEEEEEeCceEEEEEEECcCCccEEEEeCCCCceEEEccCcccccccc
Confidence            66789999999999999999999999999889999999999999999999999999999999999999998876554443


Q ss_pred             ccceecCccccCcceEEEEcCCeEEEcceeecCCCCCCCceEEEEEecCceEEEEeEEeeeeeeEEeecceEEeeecEEe
Q 024928           81 QAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIE  160 (260)
Q Consensus        81 ~~~~~~g~~t~~~atv~v~a~~~~~~nlti~Nt~~~~~~qa~Al~v~~~~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~  160 (260)
                      ......|++|++++||.|.+++|+++||||+|+++...+||+||++.+||+.|++|+|+|+|||||++.|||||++|+||
T Consensus        82 ~~~~~~g~gT~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~Ie  161 (317)
T PLN02773         82 QASRVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIE  161 (317)
T ss_pred             ccccccCcCccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEe
Confidence            33333466899999999999999999999999998777899999999999999999999999999999999999999999


Q ss_pred             ccceeEecccceEEEeeEEEEeecceEEecCCCCCCCCeeEEEEccEEeecCCcceeEecccccccceEEEEecccCcee
Q 024928          161 GSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCI  240 (260)
Q Consensus       161 G~vDfI~G~g~a~f~~c~i~~~~~g~ItA~~r~~~~~~~G~vf~~c~v~~~~~~~~~yLGRpW~~~~~vv~~~~~~~~~i  240 (260)
                      |+||||||.|.++||+|+|+++..|+||||+|.++.+.+||||.+|+|+++++.+.+||||||+++++|||++|+|+++|
T Consensus       162 G~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW~~~a~vVf~~t~l~~~I  241 (317)
T PLN02773        162 GSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPWGPFGRVVFAYTYMDACI  241 (317)
T ss_pred             ecccEEeeccEEEEEeeEEEEccCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCCCCCceEEEEecccCCeE
Confidence            99999999999999999999999999999999887788999999999999876677999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCC
Q 024928          241 RHVGWHNWGKQNAKPG  256 (260)
Q Consensus       241 ~~~Gw~~w~~~~~~~~  256 (260)
                      +|+||.+|++..++++
T Consensus       242 ~p~GW~~w~~~~~~~t  257 (317)
T PLN02773        242 RPVGWNNWGKAENERT  257 (317)
T ss_pred             ccccccccCCCCCCCc
Confidence            9999999997665544

>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-43
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-34
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-18
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-18
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 7e-18
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-17
3grh_A422 Crystal Structure Of Escherichia Coli Ybhc Length = 3e-05
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 132/254 (51%), Gaps = 21/254 (8%)
Query: 6   VTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPEN 65
           V VA DG+GDY+TV EA+   P  +  R +IRI  GVYR+ V VPK K  I   G    +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 66  TVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIR 125
           T++T +               G+ TF   +V   G  F+A +ITF+N+A     QAVA+R
Sbjct: 69  TIITASKNVQD----------GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALR 118
Query: 126 VTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG 185
           V +D  AFY C  L +QD+LY+H  +Q+  +C+I G+VDFIFGN+  +++ C IH +  G
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPG 178
Query: 186 -----FITAQSRKSSQETTGYVFLRCVITGNGGTGYI------YLGRPWGPFGRVVFAFT 234
                 +TAQ R    + TG V  +  I        +      YLGRPW  + R V   +
Sbjct: 179 SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQS 238
Query: 235 YMDQCIRHVGWHNW 248
            +   I   GW  W
Sbjct: 239 SITNVINPAGWFPW 252
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-114
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-113
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-100
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-98
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-94
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  329 bits (845), Expect = e-114
 Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 21/259 (8%)

Query: 6   VTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPEN 65
             VAQDGTGDY+T+ EA+   P  +  R +I +  G Y++ V V   K  + + G     
Sbjct: 5   AVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYA 64

Query: 66  TVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIR 125
           T +T +               G+ TF   ++   G+ F+ ++I  +N+A     QAVA+R
Sbjct: 65  TTITGSLNVVD----------GSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALR 114

Query: 126 VTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK--- 182
           V AD      CR   +QDTLY H  +Q+ +D Y+ G+VDFIFGN+  + + C +  +   
Sbjct: 115 VGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPG 174

Query: 183 --SQGFITAQSRKSSQETTGYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVFAFT 234
              Q  +TAQ R    + TG     C I  +            YLGRPW  + R V   +
Sbjct: 175 KYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMES 234

Query: 235 YMDQCIRHVGWHNWGKQNA 253
           Y+   I   GW  W    A
Sbjct: 235 YLGGLINPAGWAEWDGDFA 253
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.76
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.53
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.08
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.34
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.2
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.99
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.95
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.89
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.63
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.61
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.6
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.56
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.52
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.44
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.43
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.2
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.11
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.06
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.94
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.78
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.78
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.74
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.66
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.56
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.36
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.14
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.13
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.02
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.96
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.92
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.78
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.55
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.5
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 94.24
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 92.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 92.74
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 92.43
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 92.06
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.01
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 91.54
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 91.26
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 90.66
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 87.98
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 80.85
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2e-74  Score=524.96  Aligned_cols=245  Identities=34%  Similarity=0.588  Sum_probs=227.1

Q ss_pred             cceEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCcEEeeeeeecCCcccEEEeccCCCCeEEEeCCCcceeecccc
Q 024928            3 SCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQA   82 (260)
Q Consensus         3 ~~~i~V~~~g~g~y~TIq~Al~a~~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~~~~~t~I~~~~~~~~~~~~~~   82 (260)
                      ..+|+|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|++++.|+|+++...        
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~--------   73 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNV--------   73 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCT--------
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccc--------
Confidence            468999999999999999999999999999999999999999999999889999999999999999987632        


Q ss_pred             ceecCccccCcceEEEEcCCeEEEcceeecCCCCCCCceEEEEEecCceEEEEeEEeeeeeeEEeecceEEeeecEEecc
Q 024928           83 ARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGS  162 (260)
Q Consensus        83 ~~~~g~~t~~~atv~v~a~~~~~~nlti~Nt~~~~~~qa~Al~v~~~~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~  162 (260)
                        ..+.+|+.++||.|.+++|+++||||+|+++...+||+||++.+|++.|++|+|+|+|||||++.+|+||++|+|+|+
T Consensus        74 --~~g~~t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~  151 (317)
T 1xg2_A           74 --VDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGT  151 (317)
T ss_dssp             --TTTCCSGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEES
T ss_pred             --cCCCcccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEec
Confidence              235678889999999999999999999999877789999999999999999999999999999999999999999999


Q ss_pred             ceeEecccceEEEeeEEEEee-----cceEEecCCCCCCCCeeEEEEccEEeecCCc------ceeEecccccccceEEE
Q 024928          163 VDFIFGNSTALIEHCHIHCKS-----QGFITAQSRKSSQETTGYVFLRCVITGNGGT------GYIYLGRPWGPFGRVVF  231 (260)
Q Consensus       163 vDfI~G~g~a~f~~c~i~~~~-----~g~ItA~~r~~~~~~~G~vf~~c~v~~~~~~------~~~yLGRpW~~~~~vv~  231 (260)
                      ||||||.+.++||+|+|+++.     .++||||+|.++.+.+||+|++|+|+++++.      .++||||||++++|+||
T Consensus       152 vDFIfG~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~  231 (317)
T 1xg2_A          152 VDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVV  231 (317)
T ss_dssp             SSCEEECCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEE
T ss_pred             eeEEcCCceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEE
Confidence            999999999999999999975     3689999999888999999999999988752      26899999999999999


Q ss_pred             EecccCceecCCCCCCCCCCCCCCCc
Q 024928          232 AFTYMDQCIRHVGWHNWGKQNAKPGL  257 (260)
Q Consensus       232 ~~~~~~~~i~~~Gw~~w~~~~~~~~~  257 (260)
                      ++|+|+++|+|+||.+|++..+.+|+
T Consensus       232 ~~t~~~~~I~p~GW~~w~~~~~~~t~  257 (317)
T 1xg2_A          232 MESYLGGLINPAGWAEWDGDFALKTL  257 (317)
T ss_dssp             ESCEECTTBCTTCSCCSSTTTTTTTC
T ss_pred             EecccCCcccccccccCCCCCCcCce
Confidence            99999999999999999987666554
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 2e-95
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 6e-68
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  280 bits (718), Expect = 2e-95
 Identities = 94/259 (36%), Positives = 133/259 (51%), Gaps = 21/259 (8%)

Query: 6   VTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPEN 65
           V VA DG+GDY+TV EA+   P  +  R +IRI  GVYR+ V VPK K  I   G    +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 66  TVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIR 125
           T++T +               G+ TF   +V   G  F+A +ITF+N+A     QAVA+R
Sbjct: 69  TIITASKNVQD----------GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALR 118

Query: 126 VTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK--- 182
           V +D  AFY C  L +QD+LY+H  +Q+  +C+I G+VDFIFGN+  +++ C IH +   
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPG 178

Query: 183 --SQGFITAQSRKSSQETTGYVFLRCVITGNG------GTGYIYLGRPWGPFGRVVFAFT 234
              +  +TAQ R    + TG V  +  I           +   YLGRPW  + R V   +
Sbjct: 179 SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQS 238

Query: 235 YMDQCIRHVGWHNWGKQNA 253
            +   I   GW  W    A
Sbjct: 239 SITNVINPAGWFPWDGNFA 257
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.34
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.06
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.56
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.01
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.91
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.6
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.28
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.61
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.32
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.3
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.3
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.15
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.07
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.9
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.57
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.48
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 94.17
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 92.1
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 92.07
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 90.74
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 89.12
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 87.84
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 87.82
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 86.79
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.1e-78  Score=546.68  Aligned_cols=245  Identities=39%  Similarity=0.694  Sum_probs=227.4

Q ss_pred             cceEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCcEEeeeeeecCCcccEEEeccCCCCeEEEeCCCcceeecccc
Q 024928            3 SCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQA   82 (260)
Q Consensus         3 ~~~i~V~~~g~g~y~TIq~Al~a~~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~Itl~G~~~~~t~I~~~~~~~~~~~~~~   82 (260)
                      +..++|+++|+|+|+|||+||+++|.++++|++|+|+||+|+|+|+|++.||+|||+|++++.++|+++..+.       
T Consensus         6 ~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~-------   78 (319)
T d1gq8a_           6 GPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQ-------   78 (319)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTT-------
T ss_pred             CCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEeccccc-------
Confidence            4579999999999999999999999999999999999999999999999999999999999999999986432       


Q ss_pred             ceecCccccCcceEEEEcCCeEEEcceeecCCCCCCCceEEEEEecCceEEEEeEEeeeeeeEEeecceEEeeecEEecc
Q 024928           83 ARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGS  162 (260)
Q Consensus        83 ~~~~g~~t~~~atv~v~a~~~~~~nlti~Nt~~~~~~qa~Al~v~~~~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~  162 (260)
                         .+.+++.++||.+.+++|+++||||+|+++...+||+||++.+||+.|++|+|+|+|||||++.|||||++|+|+|+
T Consensus        79 ---~~~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~  155 (319)
T d1gq8a_          79 ---DGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGT  155 (319)
T ss_dssp             ---TTCCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEES
T ss_pred             ---CCCccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEee
Confidence               34567889999999999999999999999877789999999999999999999999999999999999999999999


Q ss_pred             ceeEecccceEEEeeEEEEee-----cceEEecCCCCCCCCeeEEEEccEEeecCC------cceeEecccccccceEEE
Q 024928          163 VDFIFGNSTALIEHCHIHCKS-----QGFITAQSRKSSQETTGYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVF  231 (260)
Q Consensus       163 vDfI~G~g~a~f~~c~i~~~~-----~g~ItA~~r~~~~~~~G~vf~~c~v~~~~~------~~~~yLGRpW~~~~~vv~  231 (260)
                      ||||||.++++||+|+|+++.     .++||||+|.++.+.+||||.+|+|+++++      ..++||||||++++||||
T Consensus       156 vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf  235 (319)
T d1gq8a_         156 VDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVV  235 (319)
T ss_dssp             SSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEE
T ss_pred             ccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEE
Confidence            999999999999999999975     258999999988899999999999999875      235799999999999999


Q ss_pred             EecccCceecCCCCCCCCCCCCCCCc
Q 024928          232 AFTYMDQCIRHVGWHNWGKQNAKPGL  257 (260)
Q Consensus       232 ~~~~~~~~i~~~Gw~~w~~~~~~~~~  257 (260)
                      ++|+|+++|+|+||.+|+...+.+|+
T Consensus       236 ~~t~l~~~I~p~GW~~w~~~~~~~t~  261 (319)
T d1gq8a_         236 MQSSITNVINPAGWFPWDGNFALDTL  261 (319)
T ss_dssp             ESCEECTTBCTTCCCCSSTTTTTTTC
T ss_pred             EecccccccccccccccCCCCccCce
Confidence            99999999999999999987766653
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure