Query 024929
Match_columns 260
No_of_seqs 126 out of 442
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 4.4E-95 1E-99 619.0 15.7 235 5-239 3-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.6E-91 3.5E-96 625.2 25.8 236 7-242 1-238 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 3.7E-87 7.9E-92 596.2 24.0 235 7-241 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 1.6E-82 3.5E-87 556.1 20.5 237 6-242 1-238 (247)
5 PF13424 TPR_12: Tetratricopep 96.1 0.012 2.7E-07 42.3 4.9 55 148-204 21-75 (78)
6 KOG1840 Kinesin light chain [C 94.7 4.7 0.0001 40.3 19.1 184 9-207 201-399 (508)
7 TIGR00990 3a0801s09 mitochondr 91.7 3.6 7.7E-05 41.3 13.2 53 148-202 483-535 (615)
8 PF12862 Apc5: Anaphase-promot 89.1 2.2 4.8E-05 32.3 7.1 71 132-208 3-74 (94)
9 KOG1840 Kinesin light chain [C 88.4 29 0.00063 34.8 19.6 183 9-214 285-489 (508)
10 PF07719 TPR_2: Tetratricopept 79.9 5 0.00011 23.5 4.3 30 10-39 4-33 (34)
11 PF04781 DUF627: Protein of un 78.6 5.6 0.00012 31.8 5.3 59 103-162 15-74 (111)
12 PF13374 TPR_10: Tetratricopep 78.0 2.2 4.9E-05 26.1 2.4 24 148-171 18-41 (42)
13 PF13414 TPR_11: TPR repeat; P 77.6 11 0.00024 25.8 6.2 47 148-203 19-66 (69)
14 PF13174 TPR_6: Tetratricopept 77.2 5.2 0.00011 23.2 3.8 31 9-39 2-32 (33)
15 PF12569 NARP1: NMDA receptor- 73.8 1E+02 0.0022 30.9 16.8 62 142-204 156-223 (517)
16 PF13181 TPR_8: Tetratricopept 72.3 6.7 0.00014 23.1 3.4 30 9-38 3-32 (34)
17 PF00515 TPR_1: Tetratricopept 71.2 10 0.00022 22.4 4.1 30 10-39 4-33 (34)
18 TIGR00990 3a0801s09 mitochondr 69.1 1.3E+02 0.0028 30.1 17.1 74 148-230 524-597 (615)
19 PF13428 TPR_14: Tetratricopep 68.5 12 0.00027 23.8 4.3 30 10-39 4-33 (44)
20 PF13431 TPR_17: Tetratricopep 63.5 9.1 0.0002 23.5 2.7 34 154-196 1-34 (34)
21 PF13424 TPR_12: Tetratricopep 63.3 14 0.0003 26.0 4.1 38 170-209 1-38 (78)
22 COG0233 Frr Ribosome recycling 62.5 34 0.00073 29.9 6.9 73 38-111 105-177 (187)
23 TIGR02917 PEP_TPR_lipo putativ 60.2 1.9E+02 0.0041 28.9 16.8 30 10-39 468-497 (899)
24 PF01765 RRF: Ribosome recycli 57.5 56 0.0012 27.4 7.4 73 38-111 85-157 (165)
25 KOG4759 Ribosome recycling fac 56.9 61 0.0013 29.7 7.9 71 38-111 183-253 (263)
26 smart00028 TPR Tetratricopepti 55.3 30 0.00064 18.1 3.9 29 10-38 4-32 (34)
27 CHL00033 ycf3 photosystem I as 55.2 1.1E+02 0.0023 25.0 8.7 69 149-226 89-163 (168)
28 PF13414 TPR_11: TPR repeat; P 55.0 64 0.0014 21.8 7.3 44 9-53 5-48 (69)
29 TIGR00496 frr ribosome recycli 54.8 48 0.001 28.5 6.6 73 38-111 94-166 (176)
30 cd00520 RRF Ribosome recycling 51.6 50 0.0011 28.3 6.2 73 38-111 99-171 (179)
31 PF13371 TPR_9: Tetratricopept 51.4 65 0.0014 22.0 5.9 48 170-227 25-72 (73)
32 PRK00083 frr ribosome recyclin 51.0 59 0.0013 28.1 6.6 73 38-111 103-175 (185)
33 PRK15363 pathogenicity island 50.3 53 0.0011 27.8 6.0 72 145-229 82-155 (157)
34 PF13432 TPR_16: Tetratricopep 50.1 76 0.0016 21.3 6.7 53 12-66 2-54 (65)
35 PF13176 TPR_7: Tetratricopept 50.1 32 0.0007 21.0 3.6 26 10-35 2-27 (36)
36 PRK10049 pgaA outer membrane p 49.5 3.2E+02 0.007 28.4 14.6 56 10-68 86-141 (765)
37 PF14559 TPR_19: Tetratricopep 48.8 80 0.0017 21.2 6.0 44 149-201 8-51 (68)
38 TIGR02917 PEP_TPR_lipo putativ 48.8 2.9E+02 0.0062 27.6 16.9 43 9-52 603-645 (899)
39 PF13432 TPR_16: Tetratricopep 48.5 36 0.00079 22.9 4.1 34 6-39 30-63 (65)
40 TIGR02521 type_IV_pilW type IV 48.3 1.4E+02 0.0031 23.9 17.0 57 9-67 33-89 (234)
41 PRK12794 flaF flagellar biosyn 47.6 25 0.00055 28.4 3.6 54 184-237 8-61 (122)
42 KOG4162 Predicted calmodulin-b 46.3 1.3E+02 0.0028 31.7 9.1 129 94-237 411-580 (799)
43 CHL00033 ycf3 photosystem I as 45.4 80 0.0017 25.7 6.4 69 119-203 32-100 (168)
44 COG3947 Response regulator con 44.5 37 0.00081 32.0 4.6 45 187-236 291-335 (361)
45 PF05010 TACC: Transforming ac 42.2 1.5E+02 0.0032 26.2 7.8 84 12-108 123-206 (207)
46 PRK14720 transcript cleavage f 42.0 43 0.00093 36.0 5.1 77 117-206 98-180 (906)
47 PRK12793 flaF flagellar biosyn 40.1 34 0.00074 27.4 3.2 53 184-237 6-59 (115)
48 TIGR02795 tol_pal_ybgF tol-pal 39.2 1.3E+02 0.0029 21.9 6.3 50 149-204 56-105 (119)
49 PF08424 NRDE-2: NRDE-2, neces 38.7 2E+02 0.0043 26.6 8.6 88 148-242 118-215 (321)
50 PF12895 Apc3: Anaphase-promot 37.6 53 0.0011 23.5 3.7 43 155-200 41-83 (84)
51 PRK02603 photosystem I assembl 37.3 1.4E+02 0.0029 24.5 6.6 50 149-204 52-101 (172)
52 PF06552 TOM20_plant: Plant sp 37.3 1.1E+02 0.0024 26.7 6.1 84 129-222 32-121 (186)
53 PF10083 DUF2321: Uncharacteri 37.0 2.3E+02 0.005 24.1 7.8 34 25-58 83-116 (158)
54 COG4499 Predicted membrane pro 36.9 69 0.0015 31.1 5.2 47 174-220 231-282 (434)
55 PF13429 TPR_15: Tetratricopep 35.7 1.1E+02 0.0024 26.9 6.3 162 12-205 49-210 (280)
56 PF14559 TPR_19: Tetratricopep 33.6 53 0.0012 22.1 3.0 53 19-73 3-55 (68)
57 PF12688 TPR_5: Tetratrico pep 32.8 2.1E+02 0.0046 22.7 6.8 50 149-204 18-67 (120)
58 PF13371 TPR_9: Tetratricopept 31.9 86 0.0019 21.4 3.9 29 10-38 32-60 (73)
59 PRK11447 cellulose synthase su 31.7 7.2E+02 0.016 27.2 16.6 63 9-72 114-176 (1157)
60 PRK15179 Vi polysaccharide bio 31.1 6.3E+02 0.014 26.4 14.3 33 8-40 87-119 (694)
61 PRK10049 pgaA outer membrane p 30.2 6.4E+02 0.014 26.2 17.6 31 10-40 52-82 (765)
62 cd02656 MIT MIT: domain contai 29.9 2.1E+02 0.0044 20.4 6.4 27 9-35 8-34 (75)
63 PLN03088 SGT1, suppressor of 29.7 1.6E+02 0.0035 27.7 6.5 45 153-201 50-96 (356)
64 PRK11788 tetratricopeptide rep 28.6 4.5E+02 0.0098 23.9 16.8 24 12-35 112-135 (389)
65 TIGR02795 tol_pal_ybgF tol-pal 27.3 2.4E+02 0.0053 20.4 7.6 43 10-52 5-49 (119)
66 PF05008 V-SNARE: Vesicle tran 26.3 2.5E+02 0.0053 20.1 6.9 67 25-92 3-70 (79)
67 PRK02603 photosystem I assembl 26.0 3.6E+02 0.0078 21.9 8.2 13 149-161 89-101 (172)
68 KOG1156 N-terminal acetyltrans 25.2 3.5E+02 0.0077 28.2 8.2 165 40-236 3-198 (700)
69 PRK15331 chaperone protein Sic 24.4 3.3E+02 0.0071 23.3 6.8 69 148-231 87-155 (165)
70 PRK11189 lipoprotein NlpI; Pro 23.9 1.7E+02 0.0037 26.5 5.4 32 8-39 237-268 (296)
71 PF07309 FlaF: Flagellar prote 23.8 86 0.0019 24.9 3.0 48 189-237 11-58 (113)
72 PRK09782 bacteriophage N4 rece 23.3 1E+03 0.022 26.1 16.2 25 11-35 513-537 (987)
73 PRK10370 formate-dependent nit 22.8 1.9E+02 0.0042 24.7 5.3 59 8-68 108-169 (198)
74 KOG2002 TPR-containing nuclear 22.7 5E+02 0.011 28.4 9.0 66 5-70 714-779 (1018)
75 PRK11447 cellulose synthase su 22.7 1E+03 0.022 26.0 15.4 55 12-68 356-410 (1157)
76 PLN03088 SGT1, suppressor of 22.5 6.4E+02 0.014 23.6 10.6 59 8-68 37-95 (356)
77 KOG3785 Uncharacterized conser 22.4 2.3E+02 0.0051 27.7 6.0 38 148-186 160-197 (557)
78 PHA02103 hypothetical protein 22.4 24 0.00052 28.2 -0.4 14 128-141 78-91 (135)
79 cd05493 Bromo_ALL-1 Bromodomai 22.3 1.1E+02 0.0025 25.1 3.5 39 94-132 75-120 (131)
80 TIGR03302 OM_YfiO outer membra 22.2 4.8E+02 0.01 22.0 16.8 63 8-71 34-98 (235)
81 cd05804 StaR_like StaR_like; a 21.8 5.8E+02 0.013 22.8 12.1 165 3-201 39-212 (355)
82 COG2250 Uncharacterized conser 21.7 4.3E+02 0.0094 21.3 9.5 103 8-111 14-129 (132)
83 PF08631 SPO22: Meiosis protei 21.6 5.9E+02 0.013 22.8 9.2 89 148-237 9-100 (278)
84 PF00901 Orbi_VP5: Orbivirus o 21.6 8E+02 0.017 24.7 9.6 190 23-228 121-330 (508)
85 COG3063 PilF Tfp pilus assembl 21.5 1.2E+02 0.0026 27.7 3.7 46 148-202 85-130 (250)
86 KOG0547 Translocase of outer m 21.1 1.1E+02 0.0024 30.9 3.6 40 149-203 132-177 (606)
87 PRK11820 hypothetical protein; 21.1 2.2E+02 0.0049 26.3 5.6 61 152-212 85-145 (288)
88 KOG1107 Membrane coat complex 21.0 2.3E+02 0.005 29.6 6.0 43 147-189 655-698 (760)
89 PF10516 SHNi-TPR: SHNi-TPR; 20.6 76 0.0016 20.3 1.7 37 130-169 2-38 (38)
90 TIGR02105 III_needle type III 20.5 2.4E+02 0.0051 20.7 4.5 36 146-184 12-51 (72)
91 PF03755 YicC_N: YicC-like fam 20.3 2E+02 0.0044 23.8 4.7 62 150-211 82-147 (159)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-95 Score=618.96 Aligned_cols=235 Identities=73% Similarity=1.143 Sum_probs=231.1
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHH
Q 024929 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (260)
Q Consensus 5 ~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 84 (260)
+.|++.+|+|+|++||+||++|++-||.++..+.+|+.+|||||||||||+||+||+|||++++++||+++++++.++.+
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~l 82 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVEL 82 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhh
Q 024929 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (260)
Q Consensus 85 i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 164 (260)
|++||++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|..
T Consensus 83 I~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~t 162 (268)
T COG5040 83 IKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATT 162 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCC
Q 024929 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIP 239 (260)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e~~ 239 (260)
.||||||||||||||||||||||+|++++||.|||+|||+||++||+|+|++|+|||+||||||||||+||++.+
T Consensus 163 eLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 163 ELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred cCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999744
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.6e-91 Score=625.21 Aligned_cols=236 Identities=75% Similarity=1.132 Sum_probs=228.4
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHH
Q 024929 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (260)
Q Consensus 7 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~-~-~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 84 (260)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhh
Q 024929 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (260)
Q Consensus 85 i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 164 (260)
+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+.
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCC
Q 024929 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 242 (260)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e~~~~~ 242 (260)
+|||||||||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+|+|||||||||++|+++.++++
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999866543
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=3.7e-87 Score=596.20 Aligned_cols=235 Identities=71% Similarity=1.108 Sum_probs=223.6
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHH
Q 024929 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIK 86 (260)
Q Consensus 7 re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~ 86 (260)
|++++|||||++|||||+||+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++.+++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhhcC
Q 024929 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (260)
Q Consensus 87 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L 166 (260)
+||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+.+|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCC
Q 024929 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED 241 (260)
Q Consensus 167 ~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e~~~~ 241 (260)
|||||+||||+||||||||||+|++++||+||++||++|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-82 Score=556.11 Aligned_cols=237 Identities=79% Similarity=1.173 Sum_probs=231.6
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHH
Q 024929 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (260)
Q Consensus 6 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 85 (260)
+|++++++|++++||+||+||+.+||.+++.+.+||.+|||||||+|||+||++|++||+|++|+||+++++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ChhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhh
Q 024929 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASA-GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (260)
Q Consensus 86 ~~yk~kie~EL~~~C~eii~lId~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 164 (260)
..||++|+.||..+|++++.++|.+|+|.++. .|++|||+|||||||||++||..|++|++++++++++|+.|.++++.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCC
Q 024929 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 242 (260)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e~~~~~ 242 (260)
.|+|||||||||+||||||||||+|.|++||.|||+|||+||.++|++++++|+|||+||||||||||+||++.+++.
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~ 238 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 238 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877664
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.08 E-value=0.012 Score=42.33 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 204 (260)
-+.|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 35799999999999 457899888888888888888877 69999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.71 E-value=4.7 Score=40.27 Aligned_cols=184 Identities=16% Similarity=0.194 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCCC-HHHHHHHHHHHhhhhhhhHHHHHHHHH-HhhhhhhhCc--
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL----D--VELT-VEERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGN-- 78 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~----~--~~Lt-~eERnLlsvAyKn~i~~~R~s~R~l~~-ieqk~~~~~~-- 78 (260)
.+.++|.+..+.|+|+..+...|+.++. . ..+- ..-.+-|++.|-+. +..+.|..++.. +...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4556888888999999999999998865 1 1122 22344466665543 445666666642 3333333333
Q ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHHHHHHHHH
Q 024929 79 EVNAKRIKE-----YRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (260)
Q Consensus 79 ~~~~~~i~~-----yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~ 153 (260)
+.....+.+ |+.-=-.|-...|+.+++|..+.+ .+..++...-+ .++..-.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~l-----------~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQL-----------SELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHHH-----------HHHHHHHHHhcchhHHHH
Confidence 332222222 233333677899999999999843 33333322221 222211122223578899
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 024929 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (260)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~ 207 (260)
.|+.|+.+....+.+.||.-=|.--|+++.||- +|..++|.++.++|+...-+
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHh
Confidence 999999999888999999999999999999886 69999999999999887654
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.71 E-value=3.6 Score=41.33 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 202 (260)
.+.|...|++|+.+.. ..++.++..+. .++.+..+|+-.|+.++|+.+.++|+
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567777887776642 23333332222 34555555665677777777666654
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.07 E-value=2.2 Score=32.28 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=50.6
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024929 132 YRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (260)
Q Consensus 132 yRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLa-LN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 208 (260)
.+|+--+..++ -..|.+.....++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34444444443 246788888888888777776654555544 788887776 599999999999888888764
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.45 E-value=29 Score=34.76 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCCCHHHHHHHH-HH--------HhhhhhhhHHHHHHHHHHhhhhhh
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD----VELTVEERNLLS-VG--------YKNVIGARRASWRILSSIEQKEEA 75 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~----~~Lt~eERnLls-vA--------yKn~i~~~R~s~R~l~~ieqk~~~ 75 (260)
-+.-+|.+.-..|+|++.-.+++.++++- ....++=-..|+ ++ |...+.-.+.+.+++. ...+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 35567888888899999999999888542 223333222222 21 3344444455555443 1111
Q ss_pred hCchHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHH
Q 024929 76 KGNEVNAKRIKEYRQKV---------ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKE 146 (260)
Q Consensus 76 ~~~~~~~~~i~~yk~ki---------e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~ 146 (260)
..+. .+..++..+ -+|=..+-..+|.+.....=. .+..--.+++.|-.+|+|-.
T Consensus 361 ~~~~----~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~k----------- 423 (508)
T KOG1840|consen 361 EDNV----NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEELK----------- 423 (508)
T ss_pred ccch----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHhc-----------
Confidence 1110 111111111 134455666677666554422 23445678888888876432
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCc
Q 024929 147 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNE 214 (260)
Q Consensus 147 ~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~e 214 (260)
-...|.+.|.+|..+. ....|.||--++..+|.++ .|+-+|+.++|++++..+..-=-..+++.+.
T Consensus 424 ~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~ 489 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEELEEKVLNAREQRLGTASP 489 (508)
T ss_pred ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 1346889999999999 7899999999999999998 4667899999999999887665555555544
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.87 E-value=5 Score=23.53 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
+..++.+..+.|+|++.++++++++..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999987663
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=78.63 E-value=5.6 Score=31.82 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccc-hhHHHHHHHHHHHHHHHHHHH
Q 024929 103 IMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG-DEKKEAAANSMKAYETATTAA 162 (260)
Q Consensus 103 ii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~-~~~~~~~~~A~~aY~~A~~~a 162 (260)
.++||.+.+...- ..++-.|-+...|+.|..+|....+ +-+..+.-.|.+||.+|..++
T Consensus 15 AL~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 15 ALEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3445555444322 2223337788999999999987654 567778889999999997554
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.04 E-value=2.2 Score=26.14 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 024929 148 AANSMKAYETATTAAEADLPPTHP 171 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~P 171 (260)
.+.|...|++|+.+.+.-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 357999999999999888899998
No 13
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=77.59 E-value=11 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 203 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~-~~~~A~~iAk~afd 203 (260)
-+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 35789999999876 34444577888888776 57 79999998888764
No 14
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.18 E-value=5.2 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999976653
No 15
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=73.75 E-value=1e+02 Score=30.91 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC------CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024929 142 DEKKEAAANSMKAYETATTAAEADLPP------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (260)
Q Consensus 142 ~~~~~~~~~A~~aY~~A~~~a~~~L~p------t~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 204 (260)
..+..+++.-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455666666666666554432 3332 357777778888888999999999999988877543
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.31 E-value=6.7 Score=23.14 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 38 (260)
-+..++++..+.|+|+.++.+++++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999998755
No 17
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.20 E-value=10 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
+..++.+..+.++|++.+.+.+++++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788899999999999999999988774
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=69.07 E-value=1.3e+02 Score=30.14 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLL 227 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLL 227 (260)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-+.-+-+.--+|.+++.+-+.+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666664 3555553 22333444444 7999999998888776654322222233566777675555
Q ss_pred Hhh
Q 024929 228 RDN 230 (260)
Q Consensus 228 rDN 230 (260)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 544
No 19
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=68.52 E-value=12 Score=23.84 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
...+|+...+.|++++.+..+++++...|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988765
No 20
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=63.49 E-value=9.1 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHH
Q 024929 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACH 196 (260)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~ 196 (260)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36677643 35554 456788888886 599999863
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=63.32 E-value=14 Score=26.01 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.5
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024929 170 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 209 (260)
Q Consensus 170 ~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~l 209 (260)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999999886 69999999999999887 5433
No 22
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=62.47 E-value=34 Score=29.85 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 38 ~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
|+||.|-|.=|.--.|...-..|-|.|.+..=.. ...+...+-..+-++-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~-d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAN-DKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988999998853111 100101000113355667788888888888888888765
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=60.24 E-value=1.9e+02 Score=28.89 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
+..++.+..+.|+|++.+.++.+++..+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 455667777777777777777776665444
No 24
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=57.52 E-value=56 Score=27.43 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 38 ~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
|.+|.|-|.-+....|...-..|.++|.+..--.+.-.+ .......-.+-..+++++|..+-+..+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999986522221100 0000012345556677777777777777777544
No 25
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=56.95 E-value=61 Score=29.71 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 38 ~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
|+.|.|-|.-|+...+.+...+|.|+|-+..=--+...+... ..-.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999886522222211111 02244556788888888888888888765
No 26
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.35 E-value=30 Score=18.13 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 38 (260)
+..++.+..+.++|++.+.++.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 35678888889999999999998887654
No 27
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=55.17 E-value=1.1e+02 Score=24.98 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHH
Q 024929 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTL 222 (260)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~y------Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ 222 (260)
+.|...|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|.....+|+.---..+ .++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~-~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI-ALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH-HhCcccHHHHHH
Confidence 5688889888865 2333 233345455554 246888888877776653322222 345556666655
Q ss_pred HHHH
Q 024929 223 IMQL 226 (260)
Q Consensus 223 IlqL 226 (260)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 4443
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=54.96 E-value=64 Score=21.82 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyK 53 (260)
.+..++.+..+.|+|++++.++++.++.+|.- ..=..-++.+|.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~ 48 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 45678899999999999999999999987663 333334444443
No 29
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=54.79 E-value=48 Score=28.46 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 38 ~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888888888753111100 000000011234555667777777777777776654
No 30
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=51.56 E-value=50 Score=28.32 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 38 ~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- +........-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999988888888888753111110 000000001234445566677777777777666554
No 31
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=51.39 E-value=65 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=30.9
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHH
Q 024929 170 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLL 227 (260)
Q Consensus 170 ~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLL 227 (260)
+|-...+-++++.+++. +|+.++|+....++... ++ ...+...++++|
T Consensus 25 ~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~--------~p-~~~~~~~~~a~l 72 (73)
T PF13371_consen 25 DPDDPELWLQRARCLFQ-LGRYEEALEDLERALEL--------SP-DDPDARALRAML 72 (73)
T ss_pred CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHH--------CC-CcHHHHHHHHhc
Confidence 55556667778888887 69999988876666522 11 344556666554
No 32
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=51.03 E-value=59 Score=28.10 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 38 ~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
|+||.|-|.=|....|...-..|.+.|.+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888885421111000 0000011234445666677777777777776554
No 33
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=50.26 E-value=53 Score=27.81 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccc--hHhHHH
Q 024929 145 KEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEES--YKDSTL 222 (260)
Q Consensus 145 ~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~--y~ds~~ 222 (260)
..--+.|..+|..|..+ .|.||- ...|.++-+.- +|+++.|+ ++|+.||.--...++.. ..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 33456788888888754 445552 14455555443 68887765 58888887665443321 223555
Q ss_pred HHHHHHh
Q 024929 223 IMQLLRD 229 (260)
Q Consensus 223 IlqLLrD 229 (260)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 5655554
No 34
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=50.11 E-value=76 Score=21.25 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHH
Q 024929 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (260)
Q Consensus 12 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l 66 (260)
-+|...-+.|+|++.+..+++++...|. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4678888999999999999999987755 5555555555554 334444444443
No 35
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=50.08 E-value=32 Score=20.97 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAK 35 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~ 35 (260)
+..+|++..+.|+|+.++++.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=49.53 E-value=3.2e+02 Score=28.39 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ 68 (260)
...+|.+.-..|++++.+..+++++...|+-.. ...+..++.. .+....+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~~ 141 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345555566666676666666666665554444 5555555543 2444555555543
No 37
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=48.84 E-value=80 Score=21.17 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024929 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 201 (260)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 201 (260)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4566777777643 44445555567777777 59999888776653
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.76 E-value=2.9e+02 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGY 52 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAy 52 (260)
-...++.+..+.|+|++.+..++++++.+|. +..-...+..+|
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 645 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAY 645 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 3445566666667777777777776655443 233344444444
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.53 E-value=36 Score=22.90 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=27.6
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 6 ~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
..+-+..++.+..+.|+|++.+.++.+++...|.
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456678999999999999999999999877653
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=48.31 E-value=1.4e+02 Score=23.95 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~ 67 (260)
-+..++...-..|+|+.++..+++++...|.- ..-...++..|-.. +....+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~~ 89 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQL-GELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 45667888888899999999999998766543 33444445444332 33344444443
No 41
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=47.64 E-value=25 Score=28.42 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccC
Q 024929 184 YYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 237 (260)
Q Consensus 184 ~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e 237 (260)
|-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.-
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~ 61 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIF 61 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 444555555666666778888888777665442233356789999999999963
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=46.34 E-value=1.3e+02 Score=31.71 Aligned_cols=129 Identities=20% Similarity=0.308 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccc-cchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 024929 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK-FGDEKKEAAANSMKAYETATTAAEADLPPTHPI 172 (260)
Q Consensus 94 ~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~Pi 172 (260)
+|..++...++++.... ...-+---+++-|=-|-..|-.. ..++|.....++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~~------~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQ------RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhhh------hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 45566666665533110 11111223456676666666544 456788889999999999874 668999
Q ss_pred hHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH------------------------HHHhhc----ccC-----------
Q 024929 173 RLGLALNFSVFYYEIMNSPERACHLAKQAFDE------------------------AISELD----TLN----------- 213 (260)
Q Consensus 173 rLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~------------------------Ai~~ld----~l~----------- 213 (260)
-...+.|++|-+ .++.+.|...++.++.- |+.-+| +-.
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 234555555554 57788888777776544 222211 111
Q ss_pred -ccchHhHHHHHHHHHhhHhhhccC
Q 024929 214 -EESYKDSTLIMQLLRDNLTLWTSD 237 (260)
Q Consensus 214 -ee~y~ds~~IlqLLrDNl~lW~~e 237 (260)
+-.++|....+.+++--|.+|..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhh
Confidence 224677777888888888999854
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=45.40 E-value=80 Score=25.71 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=43.4
Q ss_pred hhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHH
Q 024929 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLA 198 (260)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iA 198 (260)
.....++-..|-.+.-... .+.|...|+.|+.+. |.++.......|.++.+.. .|+.++|+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3445555556665543322 357888899888763 2233333355666655554 79999999988
Q ss_pred HHHHH
Q 024929 199 KQAFD 203 (260)
Q Consensus 199 k~afd 203 (260)
++|+.
T Consensus 96 ~~Al~ 100 (168)
T CHL00033 96 FQALE 100 (168)
T ss_pred HHHHH
Confidence 88774
No 44
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.48 E-value=37 Score=32.02 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=38.8
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024929 187 IMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (260)
Q Consensus 187 i~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~ 236 (260)
-.|.+.+|+++.+.+.. +|.|+|+.++.-+.++-.++||+..=.+
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 36999999999998753 7899999999999999999999976543
No 45
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=42.17 E-value=1.5e+02 Score=26.24 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHH
Q 024929 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (260)
Q Consensus 12 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~k 91 (260)
|+++|..+-.||+-|-... +..-+..++|..-+-..++.-+...+..+|--.. +-.+ .-..| .-+.+
T Consensus 123 y~~~l~~~eqry~aLK~hA----eekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~S-Le~~L-eQK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHA----EEKLEKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQS-LEESL-EQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHH-HHHHH-HHHHH
Confidence 6677777777775553333 2223345566666666666666666666665421 0000 00011 11222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024929 92 VESELSDICNDIMTVID 108 (260)
Q Consensus 92 ie~EL~~~C~eii~lId 108 (260)
=..||..||+++|.=++
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33799999999987553
No 46
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=41.99 E-value=43 Score=35.97 Aligned_cols=77 Identities=19% Similarity=0.047 Sum_probs=49.4
Q ss_pred CChhHHHHHHhhcccccc------ccccccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCC
Q 024929 117 AGESTVFFYKMKGDYYRY------LAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNS 190 (260)
Q Consensus 117 ~~eskvfy~KmkgDyyRY------laE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~ 190 (260)
......||++..|||+.- +|++-. +-.-.++|..+|++++++ .|.||. +||+=-|+|.-. +
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-d 164 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-D 164 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-h
Confidence 334555666666766532 233321 111246788889888754 377764 566656666555 9
Q ss_pred hHHHHHHHHHHHHHHH
Q 024929 191 PERACHLAKQAFDEAI 206 (260)
Q Consensus 191 ~~~A~~iAk~afd~Ai 206 (260)
.++|.+++++|+.--+
T Consensus 165 L~KA~~m~~KAV~~~i 180 (906)
T PRK14720 165 KEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999977644
No 47
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=40.10 E-value=34 Score=27.44 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=41.8
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccC
Q 024929 184 YYEIMNSPE-RACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 237 (260)
Q Consensus 184 ~yEi~~~~~-~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e 237 (260)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+.-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~~ 59 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTVL 59 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988876655544 6778889999999999963
No 48
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=39.18 E-value=1.3e+02 Score=21.88 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024929 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (260)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 204 (260)
+.|...|+.+.. +.|.+|......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777764 346666555555555555554 79999999877766655
No 49
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.66 E-value=2e+02 Score=26.62 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccch
Q 024929 148 AANSMKAYETATTAAEAD----------LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESY 217 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~----------L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y 217 (260)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 345666677776655322 233456888999999999999 599999999999887776633222222221
Q ss_pred HhHHHHHHHHHhhHhhhccCCCCCC
Q 024929 218 KDSTLIMQLLRDNLTLWTSDIPEDG 242 (260)
Q Consensus 218 ~ds~~IlqLLrDNl~lW~~e~~~~~ 242 (260)
. +.++.=-.=|.++.+--|
T Consensus 197 ~------~~~~~fe~FWeS~vpRiG 215 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIG 215 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCC
Confidence 1 444444578998776555
No 50
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=37.62 E-value=53 Score=23.50 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHH
Q 024929 155 YETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 200 (260)
Q Consensus 155 Y~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~ 200 (260)
|++|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 4555555543 3333433444444433333 35777777765444
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=37.33 E-value=1.4e+02 Score=24.52 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024929 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (260)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 204 (260)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 468888888887642 222223345666666665 79999999988777663
No 52
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.32 E-value=1.1e+02 Score=26.71 Aligned_cols=84 Identities=29% Similarity=0.350 Sum_probs=48.8
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHhhhHHHHHHHHhCChHHHH---HHHHHHH
Q 024929 129 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFYYEIMNSPERAC---HLAKQAF 202 (260)
Q Consensus 129 gDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~P---irLgLaLN~SVF~yEi~~~~~~A~---~iAk~af 202 (260)
|...==++-|..+.+.+++++.|..-|++|+.+- |..+ .-||.|+--=-|+. .+..+|- +.|...|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~---~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLT---PDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHH
Confidence 3344445667777888888999999999998663 3222 45666665545543 4555554 4566668
Q ss_pred HHHHHhhcccCccchHhHHH
Q 024929 203 DEAISELDTLNEESYKDSTL 222 (260)
Q Consensus 203 d~Ai~~ld~l~ee~y~ds~~ 222 (260)
+.|+.. .-+.+.|+-+..
T Consensus 104 qkAv~~--~P~ne~Y~ksLe 121 (186)
T PF06552_consen 104 QKAVDE--DPNNELYRKSLE 121 (186)
T ss_dssp HHHHHH---TT-HHHHHHHH
T ss_pred HHHHhc--CCCcHHHHHHHH
Confidence 888763 234456776643
No 53
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.05 E-value=2.3e+02 Score=24.07 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 024929 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (260)
Q Consensus 25 Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~ 58 (260)
..++..+++++...+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999999887653
No 54
>COG4499 Predicted membrane protein [Function unknown]
Probab=36.89 E-value=69 Score=31.14 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=39.5
Q ss_pred HHHhhhHHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhcccCccchHhH
Q 024929 174 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAISELDTLNEESYKDS 220 (260)
Q Consensus 174 LgLaLN~SVF~yEi~~~~~~A~~iAk~a-----fd~Ai~~ld~l~ee~y~ds 220 (260)
|-|+|=|.+|+|-+.--.+.||.-|.+| |++.|..++.+|.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 4467889999999999999999999999 5889999998887765443
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=35.73 E-value=1.1e+02 Score=26.94 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHH
Q 024929 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (260)
Q Consensus 12 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~k 91 (260)
.+|.|+...+++++.+.+..+++..++.-...-.+|... + .-+....+.+++...-++. .....-...+.-|
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~--- 120 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERD--GDPRYLLSALQLY--- 120 (280)
T ss_dssp --------------------------------------------------------------------------H-H---
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--ccccccccccccccccccc--cccchhhHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 024929 92 VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP 171 (260)
Q Consensus 92 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~P 171 (260)
.-..-..++.++|+... .....+.-.+|+-+.|.+|.-.-+ .++|..+|++|+++. |.||
T Consensus 121 ---~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 121 ---YRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp ---HHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred ---HHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 024929 172 IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (260)
Q Consensus 172 irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~A 205 (260)
- +++.-++.+--.|+.++|..+.+..-..+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 56
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=33.56 E-value=53 Score=22.09 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=37.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 024929 19 QAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE 73 (260)
Q Consensus 19 qaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~ 73 (260)
+.|+|++.+..+++++..+|. +.+=+-.+..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 468888899999888887777 666666666666554 66677777777655544
No 57
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=32.83 E-value=2.1e+02 Score=22.72 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024929 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (260)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 204 (260)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 4555555666655554 589999999999887654
No 58
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=31.95 E-value=86 Score=21.36 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~ 38 (260)
...+|.+..+.|+|.+.+..+.++++..|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666666777777777766665544
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=31.72 E-value=7.2e+02 Score=27.24 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 72 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk 72 (260)
..+.+|++.-..|+|++.+..+++++..+|+-..--...+.... ...+..-.+.+.+..+.+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 35788999999999999999999998765543211111111111 1224455566666654443
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.14 E-value=6.3e+02 Score=26.37 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024929 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (260)
Q Consensus 8 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 40 (260)
+-+.-+|++..+.|||+|....+..+++..|+.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~ 119 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS 119 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 345678999999999999999999999888776
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=30.24 E-value=6.4e+02 Score=26.20 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~L 40 (260)
+..+|.+.-..+++++++.++++++...|.-
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6778888888899999999998888776554
No 62
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=29.94 E-value=2.1e+02 Score=20.36 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024929 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (260)
Q Consensus 9 ~l~~~AklaeqaeRy~Dm~~~mk~~i~ 35 (260)
.++-.|--.++.|+|++.+.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777888999999998888775
No 63
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=29.73 E-value=1.6e+02 Score=27.67 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhh--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024929 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 201 (260)
Q Consensus 153 ~aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 201 (260)
.-|++|+..+.. .+.|.+| ...++.++.|+. +|+.+.|+...++|
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 344555554432 2444333 233444444443 56776666644443
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=28.55 E-value=4.5e+02 Score=23.87 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=11.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Q 024929 12 YVAKLAEQAERYDEMVDAMKNVAK 35 (260)
Q Consensus 12 ~~AklaeqaeRy~Dm~~~mk~~i~ 35 (260)
.++.+..+.|+|+....+++++.+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Confidence 334444444555555555555443
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.29 E-value=2.4e+02 Score=20.38 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 024929 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV--ELTVEERNLLSVGY 52 (260)
Q Consensus 10 l~~~AklaeqaeRy~Dm~~~mk~~i~~~~--~Lt~eERnLlsvAy 52 (260)
+.-.+....+.|+|++.+..+.+++..+| .+..+-+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455556666777777777766665443 33344444444443
No 66
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.27 E-value=2.5e+02 Score=20.07 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh-hhhCchHHHHHHHHHHHHH
Q 024929 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EAKGNEVNAKRIKEYRQKV 92 (260)
Q Consensus 25 Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~-~~~~~~~~~~~i~~yk~ki 92 (260)
....-+...+..-+.++.++|+-...-....+..-..-+..+.. |-+. ...........++.||..+
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~-E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMEL-EVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444334555578877777777777776665555532 2111 1011122445566666554
No 67
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=26.02 E-value=3.6e+02 Score=21.91 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 024929 149 ANSMKAYETATTA 161 (260)
Q Consensus 149 ~~A~~aY~~A~~~ 161 (260)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5688888888864
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=25.17 E-value=3.5e+02 Score=28.17 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 024929 40 LTVEERNLLSVGYKNV-IGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAG 118 (260)
Q Consensus 40 Lt~eERnLlsvAyKn~-i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~ 118 (260)
|++.|-.||-.+.|.. ..+++++++.+.+|-.+....|.+-...-+.-+.--=. ++....+-.-|-. +.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-------~ea~~~vr~glr~---d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-------EEAYELVRLGLRN---DL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-------HHHHHHHHHHhcc---Cc
Confidence 8889999999999985 55679999999998877554444322211110000001 2333333332211 22
Q ss_pred hhHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHhhcC------------------------------CC
Q 024929 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL------------------------------PP 168 (260)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L------------------------------~p 168 (260)
.| -++|+.-|=+||=--+ -..|..||+.|+.+...++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~dK~----------Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSDKK----------YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhhhh----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3677777777763222 1357777777765432221 22
Q ss_pred CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024929 169 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (260)
Q Consensus 169 t~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~ 236 (260)
.|.-++|+|+. ++ ..|+...|..|..+-..... ..++-+.|.-+.++| ..|..+-..
T Consensus 142 ~ra~w~~~Avs----~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~L---y~n~i~~E~ 198 (700)
T KOG1156|consen 142 QRASWIGFAVA----QH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLL---YQNQILIEA 198 (700)
T ss_pred hHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHH---HHHHHHHHc
Confidence 23333333333 33 35888888888766544443 345666666665554 445444443
No 69
>PRK15331 chaperone protein SicA; Provisional
Probab=24.41 E-value=3.3e+02 Score=23.26 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLL 227 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLL 227 (260)
-++|.++|--|.-+... .|.-|.+.|. .|=.+|++.+|.. +|.-|+..-. ..+-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~--dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKN--DYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccC--CCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 34566666666555432 2333444443 3445789888776 7888876311 112233356666666
Q ss_pred HhhH
Q 024929 228 RDNL 231 (260)
Q Consensus 228 rDNl 231 (260)
..|.
T Consensus 152 ~~~~ 155 (165)
T PRK15331 152 KTAE 155 (165)
T ss_pred Hccc
Confidence 5554
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=23.86 E-value=1.7e+02 Score=26.48 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024929 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (260)
Q Consensus 8 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~ 39 (260)
+-..+++++..+.|+|++.+.+.++++..+|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 34678999999999999999999999988764
No 71
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=23.76 E-value=86 Score=24.88 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccC
Q 024929 189 NSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 237 (260)
Q Consensus 189 ~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~lW~~e 237 (260)
.......++=..+|..+...|....+..-. +..-++-|.+|..+|+.-
T Consensus 11 ~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~~ 58 (113)
T PF07309_consen 11 QSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTIF 58 (113)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 334444555566777777777655422222 222239999999999963
No 72
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=23.26 E-value=1e+03 Score=26.07 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 024929 11 VYVAKLAEQAERYDEMVDAMKNVAK 35 (260)
Q Consensus 11 ~~~AklaeqaeRy~Dm~~~mk~~i~ 35 (260)
+.+|.+..+.|+|++.+...+++..
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3445555556666666666655443
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=22.83 E-value=1.9e+02 Score=24.66 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=37.8
Q ss_pred HhHHHHHHH-HHHhCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024929 8 ENFVYVAKL-AEQAER--YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (260)
Q Consensus 8 e~l~~~Akl-aeqaeR--y~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ 68 (260)
+-+..+|.+ ..+.|+ +++....+.+++..+|. +.+=+.+|..++-. .+....|......
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~ 169 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 445666774 467787 58999999999888776 44556666666543 3444444444433
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.69 E-value=5e+02 Score=28.37 Aligned_cols=66 Identities=23% Similarity=0.136 Sum_probs=54.2
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 024929 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 70 (260)
Q Consensus 5 ~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ie 70 (260)
++++-+.++||...++|+|.+.......+....|.=+.=.-|+.-|..|-.-+.+|.--|++..+.
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~ 779 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVL 779 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 356788899999999999999999999988877776777888888888888877777666665544
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=22.67 E-value=1e+03 Score=26.04 Aligned_cols=55 Identities=11% Similarity=-0.101 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024929 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (260)
Q Consensus 12 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ 68 (260)
.++.++-..|+|++.+..+++++..+|.-. .=...|..+|.. .+....+.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345666678999999999999998877532 233344444432 3445555555544
No 76
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=22.52 E-value=6.4e+02 Score=23.56 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024929 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (260)
Q Consensus 8 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ 68 (260)
.-+..+|.+..+.|+|++.+..+.+++..+|.. ..=...+..+|-. .+....|.+.+..
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 345667777888888888888888888776653 3334455555543 4666666666644
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.39 E-value=2.3e+02 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYE 186 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yE 186 (260)
+--....||+|+++=+.-| .++|-++||-.+.+..||.
T Consensus 160 vhYmR~HYQeAIdvYkrvL-~dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 160 VHYMRMHYQEAIDVYKRVL-QDNPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcChhhhhhHHHHHHHHHh
Confidence 3345678999999986544 4799999999999998884
No 78
>PHA02103 hypothetical protein
Probab=22.38 E-value=24 Score=28.17 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.3
Q ss_pred hccccccccccccc
Q 024929 128 KGDYYRYLAEFKFG 141 (260)
Q Consensus 128 kgDyyRYlaE~~~~ 141 (260)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 56999999986655
No 79
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=22.34 E-value=1.1e+02 Score=25.07 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCC-------ChhHHHHHHhhcccc
Q 024929 94 SELSDICNDIMTVIDEHLIPSASA-------GESTVFFYKMKGDYY 132 (260)
Q Consensus 94 ~EL~~~C~eii~lId~~Lip~~~~-------~eskvfy~KmkgDyy 132 (260)
+=+..+|+||+.+|...|.-.... .-.|-||+|+-=+-|
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf 120 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVF 120 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhc
Confidence 456789999999999888532222 236778888754433
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.17 E-value=4.8e+02 Score=21.97 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 024929 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (260)
Q Consensus 8 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt--~eERnLlsvAyKn~i~~~R~s~R~l~~ieq 71 (260)
+.+..++...-+.|+|++.+..+.+++..+|.-. .+-+..+..+|-.. +....|...+..+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 4566777888889999999999999998766532 33445555554432 455556666655433
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=21.77 E-value=5.8e+02 Score=22.82 Aligned_cols=165 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred CchhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh---------hhhhhhHHHHHHHHHHhhhh
Q 024929 3 SSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK---------NVIGARRASWRILSSIEQKE 73 (260)
Q Consensus 3 ~~~~re~l~~~AklaeqaeRy~Dm~~~mk~~i~~~~~Lt~eERnLlsvAyK---------n~i~~~R~s~R~l~~ieqk~ 73 (260)
..+.++-....|-++-+.|+++.+..++.++++..|.-. .+++ ...+.....-+.+.......
T Consensus 39 ~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (355)
T cd05804 39 RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--------LALKLHLGAFGLGDFSGMRDHVARVLPLWAPEN 110 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--------HHHHHhHHHHHhcccccCchhHHHHHhccCcCC
Q ss_pred hhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccccchhHHHHHHHHHH
Q 024929 74 EAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (260)
Q Consensus 74 ~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~ 153 (260)
.........-..-.....--++-...|...+.+-... ...+.+.|..|.-.-+ .+.|..
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----------~~~~~~la~i~~~~g~----------~~eA~~ 169 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----------AWAVHAVAHVLEMQGR----------FKEGIA 169 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------cHHHHHHHHHHHHcCC----------HHHHHH
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024929 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 201 (260)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 201 (260)
.|++++..... ..+.+....++.+.++.. .|+.++|+.+.+++
T Consensus 170 ~l~~~l~~~~~----~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~~ 212 (355)
T cd05804 170 FMESWRDTWDC----SSMLRGHNWWHLALFYLE-RGDYEAALAIYDTH 212 (355)
T ss_pred HHHhhhhccCC----CcchhHHHHHHHHHHHHH-CCCHHHHHHHHHHH
No 82
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=21.66 E-value=4.3e+02 Score=21.27 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhc----------C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhh
Q 024929 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL----------D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAK 76 (260)
Q Consensus 8 e~l~~~AklaeqaeRy~Dm~~~mk~~i~~----------~-~~Lt~eERnLlsvAyKn~i~~~R~s~R~l~~ieqk~~~~ 76 (260)
...+-.|+..-..|.|+-++..-.|.++. + ++-|+.=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 44566778888889999998887777642 3 77788888888888764 333333333333333321111
Q ss_pred CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024929 77 GNEV--NAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (260)
Q Consensus 77 ~~~~--~~~~i~~yk~kie~EL~~~C~eii~lId~~L 111 (260)
.-+. .......|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0010 0012356777888889999999999998765
No 83
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=21.60 E-value=5.9e+02 Score=22.79 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH-HhhhHHHHHHHHhCChHHHHHHHHHHHHHHH--HhhcccCccchHhHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLNEESYKDSTLIM 224 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai--~~ld~l~ee~y~ds~~Il 224 (260)
.+.|.-.|.+|-.+.. .++|....+|. +.+|+.+-.+.--++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3568888888887765 78888999998 7889999999864499999999999988632 223333333222235677
Q ss_pred HHHHhhHhhhccC
Q 024929 225 QLLRDNLTLWTSD 237 (260)
Q Consensus 225 qLLrDNl~lW~~e 237 (260)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7777777777653
No 84
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.57 E-value=8e+02 Score=24.72 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HhhhhhhhHHHHHHHHHHhhhhhhhCchHHHHHHHHHHHHHHHHHHHH
Q 024929 23 YDEMVDAMKNVAKLDVELTVEERNLLSVG---YKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDI 99 (260)
Q Consensus 23 y~Dm~~~mk~~i~~~~~Lt~eERnLlsvA---yKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~ 99 (260)
.++.-++|+.... ..+.-.+|..+|..| |..++..-+..+..|..-.+++...-+..-...+..||.++..==
T Consensus 121 L~~v~~~~~~~~~-~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~--- 196 (508)
T PF00901_consen 121 LEKVYKFMKGQEK-VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALK--- 196 (508)
T ss_pred HHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---
Confidence 3444455544332 344556677788776 556777888888888776777765544455678888888763211
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHhhccccccccccc--cchhHHHH---HHHHHHHHHHHHH--------HHhhcC
Q 024929 100 CNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK--FGDEKKEA---AANSMKAYETATT--------AAEADL 166 (260)
Q Consensus 100 C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~--~~~~~~~~---~~~A~~aY~~A~~--------~a~~~L 166 (260)
+.|++=..-++ .|+.==-.-|-||.---.||=- -|.--... ..-+...|+-.-- +.....
T Consensus 197 --~aIe~Er~~m~-----EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATaRaieg~yKLkkvI~aLtGidlsHl~~ 269 (508)
T PF00901_consen 197 --NAIEVEREGMQ-----EEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATARAIEGAYKLKKVINALTGIDLSHLRT 269 (508)
T ss_pred --HHHHHHHhhHH-----HHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhccC
Confidence 11111111110 0110011124444433333321 13222221 1223455554432 223468
Q ss_pred CCCCcchHHHhhhHHHHHHHHhCChHHHHHHH----HHHHHHHHHhhcccCccchHhHHHHHHHHH
Q 024929 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLA----KQAFDEAISELDTLNEESYKDSTLIMQLLR 228 (260)
Q Consensus 167 ~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iA----k~afd~Ai~~ld~l~ee~y~ds~~IlqLLr 228 (260)
|+-||--|..+|-. .--.-++++...+ ...+++--.+++.+.++..+-....++--+
T Consensus 270 P~I~p~~iet~L~~-----~~~~i~D~~L~~~v~sK~~~v~E~~~E~~Hi~~~i~P~ikk~~~e~~ 330 (508)
T PF00901_consen 270 PKIHPGTIETILTA-----DTPEIPDKSLAQIVSSKLRHVEENEREVEHIKQEILPKIKKAAEEDS 330 (508)
T ss_pred CCcCHHHHHHHHhc-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999887753 1100123333332 244556566666666666555555554333
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.51 E-value=1.2e+02 Score=27.65 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024929 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (260)
Q Consensus 148 ~~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 202 (260)
.+.|.+.|++|+.++. -+ =-+--||.-|++.. |.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~p-----~~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLAP-----NN---GDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcCC-----Cc---cchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 4578999999986542 22 22456899999985 69998877654443
No 86
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.09 E-value=1.1e+02 Score=30.93 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHH------HHHhCChHHHHHHHHHHHH
Q 024929 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFY------YEIMNSPERACHLAKQAFD 203 (260)
Q Consensus 149 ~~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~------yEi~~~~~~A~~iAk~afd 203 (260)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 87
>PRK11820 hypothetical protein; Provisional
Probab=21.05 E-value=2.2e+02 Score=26.30 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccc
Q 024929 152 MKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTL 212 (260)
Q Consensus 152 ~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l 212 (260)
..+|-+++.-....++...|+.|.-.|.+.--..+--.+.+..-.....|+++|+..+...
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLEAEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666644334564445999998888753222223356666678889999999877643
No 88
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.00 E-value=2.3e+02 Score=29.64 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchH-HHhhhHHHHHHHHhC
Q 024929 147 AAANSMKAYETATTAAEADLPPTHPIRL-GLALNFSVFYYEIMN 189 (260)
Q Consensus 147 ~~~~A~~aY~~A~~~a~~~L~pt~PirL-gLaLN~SVF~yEi~~ 189 (260)
--++-.+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--+
T Consensus 655 dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 655 DGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 3567899999999999999999988777 458898889998544
No 89
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.59 E-value=76 Score=20.28 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=25.3
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 024929 130 DYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT 169 (260)
Q Consensus 130 DyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt 169 (260)
|.|--++|+.-..++ -+.|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 445556666554443 3467888999999988778773
No 90
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=20.50 E-value=2.4e+02 Score=20.74 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHH----HhhhHHHHH
Q 024929 146 EAAANSMKAYETATTAAEADLPPTHPIRLG----LALNFSVFY 184 (260)
Q Consensus 146 ~~~~~A~~aY~~A~~~a~~~L~pt~PirLg----LaLN~SVF~ 184 (260)
..+..+-+..+.|++-. ..|.||..|. ..-+||+|+
T Consensus 12 ~~~~~~~~~l~~a~~~l---~~~~nP~~La~~Q~~~~qYs~~~ 51 (72)
T TIGR02105 12 KPADDANQAVNDSLAAL---DLPNDPELMAELQFALNQYSAYY 51 (72)
T ss_pred HHHHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566677777777543 6678998876 445677764
No 91
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=20.34 E-value=2e+02 Score=23.82 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhhhHH-HHHHHHhCC---hHHHHHHHHHHHHHHHHhhcc
Q 024929 150 NSMKAYETATTAAEADLPPTHPIRLGLALNFS-VFYYEIMNS---PERACHLAKQAFDEAISELDT 211 (260)
Q Consensus 150 ~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~S-VF~yEi~~~---~~~A~~iAk~afd~Ai~~ld~ 211 (260)
....+|-+++.-....++...|+.+...|.+. ||.-+--.+ .+..-.....++++|+..+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555678888899999999886 444122112 223457788999999987753
Done!