Your job contains 1 sequence.
>024930
MFPFQSHHGSYQNYWSHQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSH
KEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDWNSCW
SSSSGSEEESWPFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAI
SLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGYGLGRI
GSGIKRARVGGLVDECDHRD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024930
(260 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085964 - symbol:BHLH32 "AT3G25710" species:37... 224 1.8e-28 3
TAIR|locus:2012393 - symbol:AT1G68810 "AT1G68810" species... 207 1.8e-24 2
UNIPROTKB|Q6ESL3 - symbol:OJ1294_G06.8 "DNA binding prote... 273 8.7e-24 1
UNIPROTKB|Q6ZA99 - symbol:P0431A03.9 "Os08g0432800 protei... 273 8.7e-24 1
UNIPROTKB|Q6ZJC8 - symbol:OJ1666_A04.16 "Os08g0477900 pro... 271 1.4e-23 1
TAIR|locus:2063203 - symbol:AT2G41130 "AT2G41130" species... 173 2.9e-22 2
TAIR|locus:2103560 - symbol:AT3G56770 "AT3G56770" species... 169 2.9e-22 2
UNIPROTKB|Q75IR0 - symbol:OSJNBb0099P06.13 "Putative unch... 243 1.3e-20 1
TAIR|locus:2065086 - symbol:AT2G40200 "AT2G40200" species... 160 9.0e-20 2
UNIPROTKB|Q7F7Z2 - symbol:Os01g0159800 "ESTs C26093(C1162... 230 3.1e-19 1
UNIPROTKB|Q69MD0 - symbol:OSJNBb0019B14.23 "BHLH-like pro... 221 2.8e-18 1
UNIPROTKB|Q7XZF8 - symbol:OSJNBb0033J23.9 "Helix-loop-hel... 204 1.8e-16 1
UNIPROTKB|Q9FTQ1 - symbol:P0665D10.21 "DNA binding protei... 200 4.7e-16 1
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 151 4.4e-09 1
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 145 3.9e-08 1
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 138 2.7e-07 1
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 138 3.4e-07 1
TAIR|locus:2123954 - symbol:AT4G29930 "AT4G29930" species... 134 4.0e-07 1
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 126 4.5e-07 1
TAIR|locus:4010713915 - symbol:AT4G28811 species:3702 "Ar... 137 7.5e-07 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 132 1.0e-06 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 126 1.3e-06 2
TAIR|locus:2039445 - symbol:AMS "AT2G16910" species:3702 ... 135 1.4e-06 1
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 133 1.5e-06 1
TAIR|locus:2062235 - symbol:NAI1 "AT2G22770" species:3702... 124 1.7e-06 2
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 130 2.0e-06 1
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 128 3.2e-06 1
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 129 3.5e-06 1
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 123 4.4e-06 1
TAIR|locus:2155725 - symbol:bHLH093 "AT5G65640" species:3... 128 4.6e-06 1
TAIR|locus:2046198 - symbol:FRU "AT2G28160" species:3702 ... 127 4.9e-06 1
UNIPROTKB|Q6Z339 - symbol:B1121A12.20 "Os02g0726700 prote... 127 5.8e-06 1
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 120 6.4e-06 1
TAIR|locus:2178555 - symbol:MYC3 "AT5G46760" species:3702... 129 7.5e-06 2
TAIR|locus:2039094 - symbol:AIB "AT2G46510" species:3702 ... 129 7.8e-06 1
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 127 8.7e-06 1
TAIR|locus:2141055 - symbol:MYC4 "AT4G17880" species:3702... 128 1.1e-05 1
TAIR|locus:2134583 - symbol:AT4G00870 "AT4G00870" species... 126 1.1e-05 1
UNIPROTKB|Q8H8E4 - symbol:OJ1006F06.1 "Putative bHLH tran... 126 1.2e-05 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 128 1.4e-05 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 120 1.4e-05 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 126 1.6e-05 1
UNIPROTKB|Q948Y2 - symbol:Plw-OSB2 "R-type basic helix-lo... 124 1.9e-05 2
UNIPROTKB|Q6YUS3 - symbol:OSJNBb0088N06.15 "BHLH protein-... 125 2.3e-05 1
TAIR|locus:2172932 - symbol:NIG1 "AT5G46830" species:3702... 124 2.6e-05 1
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 124 2.7e-05 1
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 123 2.8e-05 1
UNIPROTKB|Q53L62 - symbol:LOC_Os11g15210 "Helix-loop-heli... 123 3.0e-05 1
UNIPROTKB|Q2QLR0 - symbol:LOC_Os12g43620 "Helix-loop-heli... 121 3.0e-05 1
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 124 3.2e-05 1
TAIR|locus:2035609 - symbol:MYC2 "AT1G32640" species:3702... 124 3.5e-05 1
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 122 4.2e-05 1
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 119 4.4e-05 1
TAIR|locus:2142419 - symbol:AT5G10570 "AT5G10570" species... 116 4.7e-05 2
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 117 5.1e-05 1
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 117 6.9e-05 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 112 9.0e-05 1
UNIPROTKB|Q5SMX2 - symbol:P0498B01.25 "Basic helix-loop-h... 118 0.00010 1
UNIPROTKB|Q657A4 - symbol:P0022F12.30 "Regulatory protein... 117 0.00011 1
UNIPROTKB|Q69IU0 - symbol:P0498F03.15 "Putative MYC-relat... 115 0.00011 1
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 118 0.00011 1
UNIPROTKB|Q6ZBI4 - symbol:P0623F08.11 "Phaseolin G-box bi... 114 0.00012 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 117 0.00012 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 118 0.00016 1
UNIPROTKB|Q6ETQ5 - symbol:P0613F08.25 "Basic helix-loop-h... 116 0.00017 1
TAIR|locus:2130619 - symbol:AT4G16430 "AT4G16430" species... 116 0.00021 1
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 113 0.00022 1
UNIPROTKB|Q5SMX4 - symbol:P0498B01.36 "cDNA clone:J033115... 115 0.00025 1
UNIPROTKB|Q84R60 - symbol:OSJNBb0113I20.8 "Putative ammon... 113 0.00029 1
FB|FBgn0027788 - symbol:Hey "Hairy/E(spl)-related with YR... 114 0.00031 1
TAIR|locus:2090847 - symbol:ICE1 "AT3G26744" species:3702... 113 0.00037 2
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 111 0.00040 1
UNIPROTKB|Q58GE3 - symbol:UDT1 "Undeveloped tapetum 1" sp... 108 0.00048 1
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 108 0.00055 1
TAIR|locus:2020003 - symbol:AT1G10610 "AT1G10610" species... 112 0.00056 1
UNIPROTKB|Q336V8 - symbol:Os10g0544200 "Os10g0544200 prot... 111 0.00058 1
TAIR|locus:2008693 - symbol:FBH1 "AT1G35460" species:3702... 103 0.00060 2
TAIR|locus:2062225 - symbol:AT2G22750 "AT2G22750" species... 109 0.00067 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 109 0.00070 1
TAIR|locus:2118524 - symbol:TT8 "AT4G09820" species:3702 ... 112 0.00071 1
UNIPROTKB|Q2R3F6 - symbol:Os11g0523700 "Helix-loop-helix ... 112 0.00075 2
TAIR|locus:2205455 - symbol:BIM2 "AT1G69010" species:3702... 106 0.00082 2
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 108 0.00086 1
>TAIR|locus:2085964 [details] [associations]
symbol:BHLH32 "AT3G25710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] [GO:0080147 "root hair cell development"
evidence=IMP] [GO:0048364 "root development" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028607
GO:GO:0003677 GO:GO:0009718 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0016036
HOGENOM:HOG000243133 ProtClustDB:CLSN2689090 EMBL:DQ205679
EMBL:AY058840 EMBL:AY079033 EMBL:AY086383 EMBL:AF488571
IPI:IPI00523379 RefSeq:NP_189199.1 UniGene:At.22148
ProteinModelPortal:Q9LS08 SMR:Q9LS08 IntAct:Q9LS08 STRING:Q9LS08
PRIDE:Q9LS08 EnsemblPlants:AT3G25710.1 GeneID:822159
KEGG:ath:AT3G25710 TAIR:At3g25710 eggNOG:NOG304577 OMA:RERINTH
PhylomeDB:Q9LS08 Genevestigator:Q9LS08 GO:GO:0080147 Uniprot:Q9LS08
Length = 344
Score = 224 (83.9 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 44/85 (51%), Positives = 62/85 (72%)
Query: 29 GTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKT 88
G+ +G IM S+ ++ K+ + A KSH EAERRRR+RIN+HL+ LR++LPNT KT
Sbjct: 106 GSSFGFDGEIMGKLSAQEVMDAKALA-ASKSHSEAERRRRERINTHLAKLRSILPNTTKT 164
Query: 89 DKASLLAEVVHHVKELRSQATDVAE 113
DKASLLAEV+ H+KEL+ Q + + +
Sbjct: 165 DKASLLAEVIQHMKELKRQTSQITD 189
Score = 82 (33.9 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 134 PGETDELTL-TPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192
P E D+LT+ + Y+D EE +++A+ CC+DR L ++ A+ +R R ++AE+
Sbjct: 194 PTECDDLTVDSSYND---EEGNL---VIRASFCCQDRTDLMHDVINALKSLRLRTLKAEI 247
Score = 38 (18.4 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 243 GIKRARVGGLVDEC 256
GIKR R +V+ C
Sbjct: 329 GIKRQRTSKMVNRC 342
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 207 (77.9 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 44 SASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKE 103
+A ++ A KSH EAERRRR+RIN+HL+ LR++LPNT KTDKASLLAEV+ HVKE
Sbjct: 162 TAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKE 221
Query: 104 LRSQATDVAE 113
L+ + + ++E
Sbjct: 222 LKRETSVISE 231
Score = 95 (38.5 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 20/59 (33%), Positives = 38/59 (64%)
Query: 134 PGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192
P E+DELT+ +++ EE + ++KA+LCCEDR L ++ + + +R + ++AE+
Sbjct: 236 PTESDELTVA-FTEE--EETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEI 291
>UNIPROTKB|Q6ESL3 [details] [associations]
symbol:OJ1294_G06.8 "DNA binding protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005093 ProteinModelPortal:Q6ESL3
EnsemblPlants:LOC_Os09g24490.1 KEGG:dosa:Os09t0410700-00
Gramene:Q6ESL3 OMA:RRHECIA Uniprot:Q6ESL3
Length = 363
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 68/169 (40%), Positives = 95/169 (56%)
Query: 36 GSIMSSTS--SASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASL 93
GS+ + +A ++ A +SH EAERRRRQRIN HL+ LR+LLPNT KTDKASL
Sbjct: 84 GSLQAELGRVTAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASL 143
Query: 94 LAEVVHHVKELRSQATDVAER----------DXXXXXXXXXXXXXXXXPFPGETDELTLT 143
LAEV+ HVKEL+ Q T +A + P E DEL +
Sbjct: 144 LAEVIEHVKELKRQTTAIAAAAAAGDYHGNDEDDDDAVVGRRSAAAQQLLPTEADELAV- 202
Query: 144 PYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192
D ++ + + +++A+LCCEDRP L ++ RA++ +R RA RAE+
Sbjct: 203 ---DAAVDA--EGKLVVRASLCCEDRPDLIPDIARALAALRLRARRAEI 246
>UNIPROTKB|Q6ZA99 [details] [associations]
symbol:P0431A03.9 "Os08g0432800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:AP008214 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP004666 EMBL:AK109616 RefSeq:NP_001061870.1
UniGene:Os.56209 EnsemblPlants:LOC_Os08g33590.1 GeneID:4345648
KEGG:osa:4345648 eggNOG:NOG311977 OMA:TSAMMED
ProtClustDB:CLSN2697339 Uniprot:Q6ZA99
Length = 345
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 66/149 (44%), Positives = 87/149 (58%)
Query: 44 SASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKE 103
+A ++ A +SH EAERRRRQRIN HL+ LR+LLPNT KTDKASLLAEV+ HVKE
Sbjct: 109 TAKEIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKE 168
Query: 104 LRSQATDVAERDXXXXXXXXXXXXXXXXPFPGETDELTLTPYSDNGIEERRQEQQLLKAT 163
L+ Q + + E D P E DEL + +D G + + +A+
Sbjct: 169 LKRQTSAMME-DGAAGGEAAAAPVVL---LPTEDDELEVDAAADEG------GRLVARAS 218
Query: 164 LCCEDRPGLNRELTRAISLVRARAVRAEM 192
LCCEDR L + RA++ +R RA RAE+
Sbjct: 219 LCCEDRADLIPGIARALAALRLRARRAEI 247
>UNIPROTKB|Q6ZJC8 [details] [associations]
symbol:OJ1666_A04.16 "Os08g0477900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003917 RefSeq:NP_001062047.1 UniGene:Os.73988
EnsemblPlants:LOC_Os08g37290.1 GeneID:4345836 KEGG:osa:4345836
OMA:LLNRDEH ProtClustDB:CLSN2697408 Uniprot:Q6ZJC8
Length = 223
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 69/150 (46%), Positives = 90/150 (60%)
Query: 44 SASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKE 103
SA+ V +K S A +SH EAER+RRQRIN+HL+TLRTL+P+ + DKA+LL EVV HV+E
Sbjct: 8 SAAAV-RKGGSPAVRSHSEAERKRRQRINAHLATLRTLVPSASRMDKAALLGEVVRHVRE 66
Query: 104 LRSQATDVAE-RDXXXXXXXXXXXXXXXXPFPGETDELTLTPYSDNGIEERRQEQQLLKA 162
LR +A D E D GE DE Y G +RR +++ +A
Sbjct: 67 LRCRADDATEGADVVVPGEGDEVGVEDEDDDEGERDEGC---YVVGG-GDRRWRRRV-RA 121
Query: 163 TLCCEDRPGLNRELTRAISLVRARAVRAEM 192
+CC DRPGL +L RA+ V AR VRAE+
Sbjct: 122 WVCCADRPGLMSDLGRAVRSVSARPVRAEV 151
>TAIR|locus:2063203 [details] [associations]
symbol:AT2G41130 "AT2G41130" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009941
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC004261 EMBL:AK119059 EMBL:AY074639 IPI:IPI00526770
PIR:T02106 RefSeq:NP_181646.1 UniGene:At.37024
ProteinModelPortal:O80674 SMR:O80674 EnsemblPlants:AT2G41130.1
GeneID:818712 KEGG:ath:AT2G41130 TAIR:At2g41130 eggNOG:NOG239121
HOGENOM:HOG000006083 InParanoid:O80674 OMA:RERIKSH PhylomeDB:O80674
ProtClustDB:CLSN2683662 Genevestigator:O80674 Uniprot:O80674
Length = 253
Score = 173 (66.0 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
A ++HKEAERRRR+RINSHL+ LR +L KTDKA+LLA+VV V+EL+ Q + ++ D
Sbjct: 67 ALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSD 126
Query: 116 XXXXXXXXXXXXXXXXPFPGETDELTLTPYSD 147
P ETDE+++ + D
Sbjct: 127 QTL--------------LPSETDEISVLHFGD 144
Score = 100 (40.3 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 30/110 (27%), Positives = 45/110 (40%)
Query: 134 PGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMX 193
P ETDE+++ + D + KA+LCCEDR L +L + + + +RAEM
Sbjct: 131 PSETDEISVLHFGDYS----NDGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMV 186
Query: 194 XXXXXXXXXXXXXXXXXXXXXXXXXXLQRALKDIVENRASGYGLGRIGSG 243
LQ ALK ++E R+S + R G
Sbjct: 187 TIGGRTRSVLVVAADKEMHGVESVHFLQNALKSLLE-RSSKSLMERSSGG 235
>TAIR|locus:2103560 [details] [associations]
symbol:AT3G56770 "AT3G56770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010200 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL390921 HOGENOM:HOG000006083 ProtClustDB:CLSN2683662
IPI:IPI00540753 PIR:T51265 RefSeq:NP_191236.1 UniGene:At.53958
ProteinModelPortal:Q9LET0 SMR:Q9LET0 EnsemblPlants:AT3G56770.1
GeneID:824844 KEGG:ath:AT3G56770 TAIR:At3g56770 eggNOG:NOG237033
InParanoid:Q9LET0 OMA:RRIIFKV PhylomeDB:Q9LET0
Genevestigator:Q9LET0 Uniprot:Q9LET0
Length = 230
Score = 169 (64.5 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 40 SSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVH 99
SS A+ E K+ + + ++HKEAER+RR RINSHL+ LR LL KTDK++LLA+VV
Sbjct: 30 SSDPFATVYEDKALA-SLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQ 88
Query: 100 HVKELRSQATDVAE 113
VKEL+ Q ++ +
Sbjct: 89 RVKELKQQTLEITD 102
Score = 104 (41.7 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 134 PGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMX 193
P ETDE+++ D + R+ + K + CCEDRP L ++L + ++ + A+M
Sbjct: 106 PSETDEISVLNIEDCSRGDDRRI--IFKVSFCCEDRPELLKDLMETLKSLQMETLFADMT 163
Query: 194 XXXXXXXXXXXXXXXXXXXXXXXXXXLQRALKDIVENRASGYGLGRIGSG----IKRAR 248
LQ ALK ++E + +G G G +KR R
Sbjct: 164 TVGGRTRNVLVVAADKEHHGVQSVNFLQNALKSLLERSSKSVMVGHGGGGGEERLKRRR 222
>UNIPROTKB|Q75IR0 [details] [associations]
symbol:OSJNBb0099P06.13 "Putative uncharacterized protein
OSJNBb0099P06.13" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR002912
InterPro:IPR011598 Pfam:PF00010 Pfam:PF01842 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0016597 GO:GO:0008152
EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC124144
EMBL:AC134341 EMBL:AK110619 RefSeq:NP_001054739.1 UniGene:Os.56950
EnsemblPlants:LOC_Os05g07120.1 EnsemblPlants:LOC_Os05g07120.2
GeneID:4337905 KEGG:osa:4337905 eggNOG:NOG309133
HOGENOM:HOG000241234 OMA:VSCDDRP ProtClustDB:CLSN2691085
Uniprot:Q75IR0
Length = 271
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 65/186 (34%), Positives = 95/186 (51%)
Query: 7 HHGSYQNYWSHQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERR 66
HHG Y + S G V P G L S+SS ++T A H EAERR
Sbjct: 19 HHGGYDDLSSVYRGTVVLPRRQGGLAPEPPPPRPSSSSGRSAAAQAT--AMTIHSEAERR 76
Query: 67 RRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDXXXXXXXXXXX 126
RR+RIN+HL+TLR +LP+ + DKA+LLA VV+ VK L+++AT+
Sbjct: 77 RRERINAHLATLRRILPDAKQMDKATLLASVVNQVKHLKTRATEATTPSTAAT------- 129
Query: 127 XXXXXPFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRAR 186
P E +E+T+ Y+ G E + ++AT+ C+DRPGL ++ +R R
Sbjct: 130 ------IPPEANEVTVQCYA--GGEHTAAARTYVRATVSCDDRPGLLADIAATFRRLRLR 181
Query: 187 AVRAEM 192
+ A+M
Sbjct: 182 PLSADM 187
>TAIR|locus:2065086 [details] [associations]
symbol:AT2G40200 "AT2G40200" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AF085279 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488586 EMBL:BT029997 EMBL:BT030051
IPI:IPI00547467 PIR:E84826 RefSeq:NP_181549.1 UniGene:At.37090
ProteinModelPortal:Q9XEF0 SMR:Q9XEF0 EnsemblPlants:AT2G40200.1
GeneID:818611 KEGG:ath:AT2G40200 TAIR:At2g40200 eggNOG:NOG318931
HOGENOM:HOG000095217 InParanoid:Q9XEF0 OMA:QPETISD PhylomeDB:Q9XEF0
ProtClustDB:CLSN2913057 ArrayExpress:Q9XEF0 Genevestigator:Q9XEF0
Uniprot:Q9XEF0
Length = 254
Score = 160 (61.4 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 31/53 (58%), Positives = 42/53 (79%)
Query: 58 KSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATD 110
+SH+ AE+RRR RINSHL+ LR L+PN+ K DKA+LLA V+ VKEL+ +A +
Sbjct: 65 RSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAE 117
Score = 90 (36.7 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 134 PGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192
P E DE+T+ P + + E + KA+ CCED+P E+ R ++ ++ ++AE+
Sbjct: 125 PTEADEVTVQPETISDFESNTNTI-IFKASFCCEDQPEAISEIIRVLTKLQLETIQAEI 182
>UNIPROTKB|Q7F7Z2 [details] [associations]
symbol:Os01g0159800 "ESTs C26093(C11622)" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 OMA:QPETISD ProtClustDB:CLSN2691085 EMBL:AP002539
RefSeq:NP_001042087.1 UniGene:Os.1443
EnsemblPlants:LOC_Os01g06640.1 EnsemblPlants:LOC_Os01g06640.2
GeneID:4324065 KEGG:osa:4324065 Uniprot:Q7F7Z2
Length = 258
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 58/159 (36%), Positives = 92/159 (57%)
Query: 39 MSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVV 98
MSS+S + + + + A K H EAERRRR+RIN+HL+TLR ++P+T + DKA+LLA VV
Sbjct: 50 MSSSSGSGR--SATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVV 107
Query: 99 HHVKELRSQATDVAERDXXXXXXXXXXXXXXXXPFPGETDELTLTPYSDNGIEER----- 153
VK+L+ +A+++ +R P P ET+E+++ ++ +
Sbjct: 108 DQVKDLKRKASEITQR----------------TPLPPETNEVSIECFTGDAATAATTVAG 151
Query: 154 RQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192
+ +KA++ C+DRP L +T A +R R VRAEM
Sbjct: 152 NHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEM 190
>UNIPROTKB|Q69MD0 [details] [associations]
symbol:OSJNBb0019B14.23 "BHLH-like protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005755
ProteinModelPortal:Q69MD0 EnsemblPlants:LOC_Os09g28900.1
Gramene:Q69MD0 OMA:EMLGAEC Uniprot:Q69MD0
Length = 215
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 61/143 (42%), Positives = 82/143 (57%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
A +SH EAER+RR+RIN+HL TLR L+P+ + DKA+LL EVV +V++LRS+A A
Sbjct: 28 ARRSHSEAERKRRERINAHLDTLRGLVPSASRMDKAALLGEVVRYVRKLRSEAAGSA--- 84
Query: 116 XXXXXXXXXXXXXXXXPFPGETDELTLTPYSDNGIEE------RRQEQQLLKATLCCEDR 169
PGE DE+ + + +E RQ + +KA++CC DR
Sbjct: 85 ---------------AVVPGEGDEVVVEE-EEVEVEGCSCDAGERQAARRVKASVCCADR 128
Query: 170 PGLNRELTRAISLVRARAVRAEM 192
PGL EL A V ARAVRAE+
Sbjct: 129 PGLMSELGDAERSVSARAVRAEI 151
>UNIPROTKB|Q7XZF8 [details] [associations]
symbol:OSJNBb0033J23.9 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000006083 OMA:RERIKSH EMBL:AC137507 STRING:Q7XZF8
EnsemblPlants:LOC_Os03g59670.1 Uniprot:Q7XZF8
Length = 268
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 21 FVQEPNWPGT--LINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTL 78
F+ WP +++ S ++A+ + A ++H+EAE+RRR+RI SHL L
Sbjct: 30 FMDSGIWPAAAGVVDVAASAEEEAAAAAAAAQDRALAASRNHREAEKRRRERIKSHLDRL 89
Query: 79 RTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDXXXXXXXXXXXXXXXXPFPGETD 138
R +L K DKASLLA+ V V++L+ + + E FP E D
Sbjct: 90 RAVLACDPKIDKASLLAKAVERVRDLKQRMAGIGE-------------AAPAHLFPTEHD 136
Query: 139 ELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192
E+ + G+ + +A++CC+DR L EL + +R R +RAEM
Sbjct: 137 EIVVLASGGGGVGGAGGAAAVFEASVCCDDRCDLLPELIETLRALRLRTLRAEM 190
>UNIPROTKB|Q9FTQ1 [details] [associations]
symbol:P0665D10.21 "DNA binding protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:AP002861 EMBL:AP002745 RefSeq:NP_001042409.1 UniGene:Os.26488
STRING:Q9FTQ1 GeneID:4324583 KEGG:osa:4324583 OMA:VRFTFLI
ProtClustDB:CLSN2691217 Uniprot:Q9FTQ1
Length = 267
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 52/126 (41%), Positives = 75/126 (59%)
Query: 1 MFPFQSHHGSYQNYWSHQNGFVQEPNWPGTLINGEGSIMSSTSSAS----KVEKKSTSD- 55
++ +Q +HG + H G Q L +GE M ++++A+ ++ K++
Sbjct: 15 LYEYQGYHGGFAG--GH--GLGQPAGRAPALDDGETEGMDASAAAAVAAMEMAKRNCGGG 70
Query: 56 -------ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQA 108
A KSH EAERRRR+RIN+HL+TLRT++P T K DKA+LLAEVV HVK+L+S A
Sbjct: 71 REEKAAMALKSHSEAERRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKLKSAA 130
Query: 109 TDVAER 114
V R
Sbjct: 131 ARVGRR 136
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 151 (58.2 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 32/85 (37%), Positives = 53/85 (62%)
Query: 34 GEGSIMSSTSSASKVEKKSTSDACKS---HKEAERRRRQRINSHLSTLRTLLPNTIKTDK 90
GE + + SS S +S+S C++ H +E+RRR RIN + L++L+PN+ KTDK
Sbjct: 173 GEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDK 232
Query: 91 ASLLAEVVHHVKELRSQATDVAERD 115
AS+L E + ++K+L+ Q + R+
Sbjct: 233 ASMLDEAIEYLKQLQLQVQMLTMRN 257
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 145 (56.1 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 46 SKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELR 105
S V K S A H ++ER+RR +IN + TL+ L+PN+ KTDKAS+L EV+ ++K+L+
Sbjct: 205 SSVSTKR-SRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQ 263
Query: 106 SQAT 109
+Q +
Sbjct: 264 AQVS 267
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 138 (53.6 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
A H E+ERRRR RIN + TL+ LLP K DK S+L +V+ H+K+L++Q
Sbjct: 167 AAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQ 218
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 138 (53.6 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 30 TLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTD 89
T + +G+ + S++SK S A HK +ERRRRQ+IN + L+ LLP KTD
Sbjct: 257 TNVENQGTEEARDSTSSK-----RSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD 311
Query: 90 KASLLAEVVHHVKELRSQ 107
++S+L +V+ +VK L+SQ
Sbjct: 312 RSSMLDDVIEYVKSLQSQ 329
>TAIR|locus:2123954 [details] [associations]
symbol:AT4G29930 "AT4G29930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161575 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AK117730 EMBL:BT005869 EMBL:AY568654
EMBL:AJ630482 EMBL:AK176201 EMBL:AK176276 EMBL:AK176674
EMBL:AK222212 EMBL:AK228201 EMBL:AF488569 IPI:IPI00516806
IPI:IPI00544272 IPI:IPI00546879 IPI:IPI00892082
RefSeq:NP_001031752.1 RefSeq:NP_001078471.1 RefSeq:NP_001119080.1
RefSeq:NP_194722.2 UniGene:At.44068 ProteinModelPortal:Q700E3
SMR:Q700E3 IntAct:Q700E3 EnsemblPlants:AT4G29930.3 GeneID:829116
KEGG:ath:AT4G29930 TAIR:At4g29930 eggNOG:NOG294060
HOGENOM:HOG000006429 InParanoid:Q8GYC3 OMA:PIENIGE PhylomeDB:Q700E3
ProtClustDB:CLSN2680169 Genevestigator:Q700E3 Uniprot:Q700E3
Length = 263
Score = 134 (52.2 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 11 YQNYWS----HQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERR 66
Y+NYW QN ++ +WP S + +S + +TS A + +ER
Sbjct: 8 YKNYWETTMFFQNQELEFDSWPME------EAFSGSGESSSPDGAATSPASSKNVVSERN 61
Query: 67 RRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
RRQ++N L LR+++PN K DKAS++ + + +++EL Q
Sbjct: 62 RRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQ 102
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
S + + H +ERRRR RIN L L+ LLPN KTDK S+L E + ++K L+ Q
Sbjct: 12 SRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQ 65
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 39 MSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVV 98
+ T A + S A H +ERRRR+RIN + TL+ LLP KTDK S+L +V+
Sbjct: 341 IQGTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVI 400
Query: 99 HHVKELRSQ 107
+VK L+ Q
Sbjct: 401 EYVKSLQLQ 409
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 132 (51.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 36 GSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLA 95
GS S + + S A + H +E+RRR RIN + L++L+PN+ KTDKAS+L
Sbjct: 13 GSSESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLD 72
Query: 96 EVVHHVKELRSQATDVAERD 115
+ + ++K+L+ Q ++ R+
Sbjct: 73 DAIEYLKQLQLQVQMLSMRN 92
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 126 (49.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 39 MSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVV 98
+ T A + S A + H AERRRR++IN + TL+ L+P K+ K S+L +V+
Sbjct: 134 IQGTEEARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVI 193
Query: 99 HHVKELRSQ 107
+VK L Q
Sbjct: 194 EYVKSLEMQ 202
Score = 39 (18.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 17 HQNGFVQEP---NWP 28
HQN F+QE +WP
Sbjct: 67 HQNLFIQEDEMSSWP 81
>TAIR|locus:2039445 [details] [associations]
symbol:AMS "AT2G16910" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] [GO:0048658 "tapetal
layer development" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC005167 EMBL:AF488565 IPI:IPI00529182 PIR:G84545
RefSeq:NP_179283.2 UniGene:At.48482 UniGene:At.70395
ProteinModelPortal:Q9ZVX2 SMR:Q9ZVX2 STRING:Q9ZVX2 PRIDE:Q9ZVX2
EnsemblPlants:AT2G16910.1 GeneID:816194 KEGG:ath:AT2G16910
TAIR:At2g16910 eggNOG:NOG313389 HOGENOM:HOG000033929
InParanoid:Q9ZVX2 OMA:PRTKSCE PhylomeDB:Q9ZVX2
ProtClustDB:CLSN2690121 ArrayExpress:Q9ZVX2 Genevestigator:Q9ZVX2
GO:GO:0048658 Uniprot:Q9ZVX2
Length = 571
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 47 KVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRS 106
K +KKS + + AERRRR+++N L LR+L+P K D+AS+L + +++VKEL++
Sbjct: 302 KYKKKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQN 361
Query: 107 QATDVAE 113
+A ++ +
Sbjct: 362 EAKELQD 368
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 31 LINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDK 90
L++ + T + + K + A + H +ERRRR RIN L L+ L+P+ KTDK
Sbjct: 204 LVDSLSEVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDK 263
Query: 91 ASLLAEVVHHVKELRSQ 107
AS+L E + ++K L+ Q
Sbjct: 264 ASILDEAIEYLKSLQMQ 280
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 124 (48.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 KSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAE 113
K H AER+RRQ++N L L LLP KTDKA++L + + H+K+L+ + + E
Sbjct: 131 KEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEE 186
Score = 41 (19.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 132 PFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRA 190
P +DE+++ + IE R ++ LL + CE G ++ ++ R V +
Sbjct: 224 PLSSSSDEVSIFKQTMPMIEARVSDRDLL-IRVHCEKNKGCMIKILSSLEKFRLEVVNS 281
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 130 (50.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAE 113
S A + H +E+RRR +IN + L++L+PN+ KTDKAS+L E + ++K+L+ Q ++
Sbjct: 102 SRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSM 161
Query: 114 RD 115
R+
Sbjct: 162 RN 163
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 128 (50.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 35 EGSIMSSTSSASKVEKKST-----SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTD 89
+G++ ST+SA V +K A H AER RR+RI + +L+ L+PNT KTD
Sbjct: 82 QGTV--STTSAPVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTD 139
Query: 90 KASLLAEVVHHVKELRSQ 107
KAS+L E++ +V+ L+ Q
Sbjct: 140 KASMLDEIIEYVRFLQLQ 157
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 129 (50.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 37/107 (34%), Positives = 55/107 (51%)
Query: 4 FQSHHGSYQNYWSHQNGFVQ---EPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSH 60
FQ GS + Q G Q +P + G G++ + S +K+ + A H
Sbjct: 93 FQIPQGSGGGLMNQQ-GQTQTQTQPQASASTATG-GTVAAPPQSRTKIRARR-GQATDPH 149
Query: 61 KEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
AER RR+RI + L+ L+PN KTDKAS+L E++ +VK L+ Q
Sbjct: 150 SIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQ 196
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 123 (48.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 51 KSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATD 110
K DA + H +E++RR +IN + L+ L+PN+ KTDKAS+L E + ++K+L+ Q
Sbjct: 90 KRNIDA-QFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQT 148
Query: 111 VA 112
+A
Sbjct: 149 LA 150
>TAIR|locus:2155725 [details] [associations]
symbol:bHLH093 "AT5G65640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB026639 HOGENOM:HOG000029066 EMBL:AF488621 EMBL:BT025665
EMBL:AK229018 EMBL:AY085134 IPI:IPI00533579 IPI:IPI00785991
RefSeq:NP_001078801.1 RefSeq:NP_569014.1 UniGene:At.28897
ProteinModelPortal:Q9LSL1 SMR:Q9LSL1 EnsemblPlants:AT5G65640.1
GeneID:836690 KEGG:ath:AT5G65640 TAIR:At5g65640 eggNOG:NOG245311
InParanoid:Q9LSL1 OMA:PLMESDQ PhylomeDB:Q9LSL1
ProtClustDB:CLSN2686406 Genevestigator:Q9LSL1 Uniprot:Q9LSL1
Length = 351
Score = 128 (50.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/159 (23%), Positives = 64/159 (40%)
Query: 18 QNGFVQEPNWPGTLINGEGSIMSSTS----SASKVEKKSTSDACKSHKEAERRRRQRINS 73
+ F ++P L+ + S S +K + K + AERRRR+R+N
Sbjct: 133 EENFNNPMSYPSPLMESDQSKSFSVGYCGGETNKKKSKKLEGQPSKNLMAERRRRKRLND 192
Query: 74 HLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDXXXXXXXXXXXXXXXXPF 133
LS LR+++P K D+ S+L + + ++KEL + + + +
Sbjct: 193 RLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDL 252
Query: 134 PGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGL 172
L S +RR E + +CC +PGL
Sbjct: 253 KDLNANEPLVRNSPKFEIDRRDEDT--RVDICCSPKPGL 289
>TAIR|locus:2046198 [details] [associations]
symbol:FRU "AT2G28160" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010039 "response to iron ion" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0034756 "regulation of iron ion
transport" evidence=IMP] [GO:0071281 "cellular response to iron
ion" evidence=IEP] [GO:0071369 "cellular response to ethylene
stimulus" evidence=IEP] [GO:0071732 "cellular response to nitric
oxide" evidence=IEP] [GO:0000041 "transition metal ion transport"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0071281 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC005851 GO:GO:0071732 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0071369 EMBL:AF488570 EMBL:BT026446 IPI:IPI00547189
PIR:E84681 RefSeq:NP_850114.1 UniGene:At.43510
ProteinModelPortal:Q0V7X4 SMR:Q0V7X4 IntAct:Q0V7X4 STRING:Q0V7X4
PaxDb:Q0V7X4 PRIDE:Q0V7X4 EnsemblPlants:AT2G28160.1 GeneID:817362
KEGG:ath:AT2G28160 TAIR:At2g28160 eggNOG:NOG236355
HOGENOM:HOG000006047 InParanoid:Q0V7X4 OMA:NLKLWIT PhylomeDB:Q0V7X4
ProtClustDB:CLSN2690963 Genevestigator:Q0V7X4 GO:GO:0034756
Uniprot:Q0V7X4
Length = 318
Score = 127 (49.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 35 EGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLL 94
+G S+T++ + +K+ +D ++ +ERRRR R+ L LR+L+PN K DKAS++
Sbjct: 108 DGDDSSATTTNNDGTRKTKTDRSRT-LISERRRRGRMKDKLYALRSLVPNITKMDKASIV 166
Query: 95 AEVVHHVKELRSQA 108
+ V +V+EL+SQA
Sbjct: 167 GDAVLYVQELQSQA 180
>UNIPROTKB|Q6Z339 [details] [associations]
symbol:B1121A12.20 "Os02g0726700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
EMBL:AP008208 EMBL:AP005284 RefSeq:NP_001047993.1 UniGene:Os.52592
GeneID:4330593 KEGG:osa:4330593 ProtClustDB:CLSN2919237
Uniprot:Q6Z339
Length = 344
Score = 127 (49.8 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 35 EGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTI-KTDKASL 93
E + SSAS ++ ++ K H E+RRR +IN L LR LLP+T K DKAS
Sbjct: 126 EATRAEGRSSASSADQGPSTPRSK-HSATEQRRRTKINDRLEILRELLPHTDQKRDKASF 184
Query: 94 LAEVVHHVKELRSQATDVAERD 115
L+EV+ +++ L+ + E D
Sbjct: 185 LSEVIEYIRFLQEKVQKYEEAD 206
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 120 (47.3 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 22/47 (46%), Positives = 36/47 (76%)
Query: 61 KEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
++ +RR RIN + TL+ L+PN+ KTDKAS+L EV+ ++K+L++Q
Sbjct: 7 RKNNHKRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQ 53
>TAIR|locus:2178555 [details] [associations]
symbol:MYC3 "AT5G46760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045893 GO:GO:0006952 GO:GO:0009753 GO:GO:0003677
GO:GO:0009718 GO:GO:0003700 GO:GO:0006351 EMBL:AB016882
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251690 IPI:IPI00533290
RefSeq:NP_199488.1 UniGene:At.28315 ProteinModelPortal:Q9FIP9
SMR:Q9FIP9 DIP:DIP-58585N PaxDb:Q9FIP9 PRIDE:Q9FIP9
EnsemblPlants:AT5G46760.1 GeneID:834719 KEGG:ath:AT5G46760
TAIR:At5g46760 eggNOG:NOG295658 InParanoid:Q9FIP9 OMA:TASSIEM
PhylomeDB:Q9FIP9 ProtClustDB:CLSN2686023 Genevestigator:Q9FIP9
Uniprot:Q9FIP9
Length = 592
Score = 129 (50.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
+H EAER+RR+++N +LR ++PN K DKASLL + + ++ EL+S+ AE D
Sbjct: 415 NHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQ-AESD 470
Score = 37 (18.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 28 PGTLINGEGSIMSSTSSASKVEKKSTSD 55
P + NG S +S S + ++ K +D
Sbjct: 279 PARVNNGNNSNSNSKSDSHQISKLEKND 306
>TAIR|locus:2039094 [details] [associations]
symbol:AIB "AT2G46510" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009611 "response to wounding" evidence=IEP;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP]
[GO:0006612 "protein targeting to membrane" evidence=RCA]
[GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
"response to water deprivation" evidence=RCA] [GO:0009620 "response
to fungus" evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic
process" evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0009737
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009611
GO:GO:0009738 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC006526 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006418
EMBL:AY094399 IPI:IPI00535471 PIR:G84903 RefSeq:NP_566078.1
UniGene:At.19872 ProteinModelPortal:Q9ZPY8 SMR:Q9ZPY8 PaxDb:Q9ZPY8
PRIDE:Q9ZPY8 EnsemblPlants:AT2G46510.1 GeneID:819262
KEGG:ath:AT2G46510 TAIR:At2g46510 eggNOG:NOG313259
HOGENOM:HOG000238207 InParanoid:Q9ZPY8 OMA:KIMEDER PhylomeDB:Q9ZPY8
ProtClustDB:CLSN2917347 Genevestigator:Q9ZPY8 InterPro:IPR025610
Pfam:PF14215 Uniprot:Q9ZPY8
Length = 566
Score = 129 (50.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 28 PGTLINGEG--SIMSSTSSASKVEKKSTS-DACKSHKEAERRRRQRINSHLSTLRTLLPN 84
P +L+ G G S++ + K + + +H EAER+RR+++N LR+++PN
Sbjct: 361 PVSLLAGAGIVSVVDEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPN 420
Query: 85 TIKTDKASLLAEVVHHVKELRSQ 107
K DKASLL + + ++KEL+ +
Sbjct: 421 ISKMDKASLLGDAISYIKELQEK 443
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 127 (49.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 37 SIMSSTSSASKVEKKSTSD----ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKAS 92
S+ S + +K ++S S+ A + H +ERRRR RIN + L+ L+P+ KTDKAS
Sbjct: 235 SVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKAS 294
Query: 93 LLAEVVHHVKELRSQ 107
+L E + ++K L+ Q
Sbjct: 295 ILDEAIDYLKSLQLQ 309
>TAIR|locus:2141055 [details] [associations]
symbol:MYC4 "AT4G17880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009718 "anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0045893 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006952 GO:GO:0003677 GO:GO:0009718
GO:GO:0003700 GO:GO:0006351 EMBL:AL161547 EMBL:AL021889
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 eggNOG:NOG295658
ProtClustDB:CLSN2686023 EMBL:AF251689 EMBL:AK221507 IPI:IPI00540927
PIR:T05074 RefSeq:NP_193522.1 UniGene:At.28316
ProteinModelPortal:O49687 SMR:O49687 EnsemblPlants:AT4G17880.1
GeneID:827511 KEGG:ath:AT4G17880 TAIR:At4g17880 InParanoid:O49687
OMA:SCERARQ PhylomeDB:O49687 Genevestigator:O49687 Uniprot:O49687
Length = 589
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
+H EAER+RR+++N +LR ++PN K DKASLL + + ++ EL+S+ AE D
Sbjct: 416 NHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQK-AESD 471
>TAIR|locus:2134583 [details] [associations]
symbol:AT4G00870 "AT4G00870" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161472 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF013294 EMBL:AJ519812 IPI:IPI00537799 PIR:T01559
RefSeq:NP_567195.1 UniGene:At.34506 ProteinModelPortal:O23090
SMR:O23090 EnsemblPlants:AT4G00870.1 GeneID:827990
KEGG:ath:AT4G00870 TAIR:At4g00870 eggNOG:NOG285642
InParanoid:O23090 OMA:SIECELM PhylomeDB:O23090
ProtClustDB:CLSN2917469 Genevestigator:O23090 Uniprot:O23090
Length = 423
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 42 TSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHV 101
T+ + K+ A SH EAE++RR+++N LR ++P + DKASLL++ V ++
Sbjct: 232 TTRVAAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYI 291
Query: 102 KELRSQATDV 111
+ L+S+ D+
Sbjct: 292 ESLKSKIDDL 301
>UNIPROTKB|Q8H8E4 [details] [associations]
symbol:OJ1006F06.1 "Putative bHLH transcription protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000029066 EMBL:AC099399 ProteinModelPortal:Q8H8E4
STRING:Q8H8E4 Gramene:Q8H8E4 Uniprot:Q8H8E4
Length = 430
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/121 (25%), Positives = 56/121 (46%)
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDXXXXXXX 122
AERRRR+R+N LS LR+++P K D+ S+L + + +VKEL ++ E +
Sbjct: 186 AERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKEL-TERIKTLEEEIGVTPEE 244
Query: 123 XXXXXXXXXPFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELTRAISL 182
G +E+ + + +E R ++ +CC PG+ A+ +
Sbjct: 245 LDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTRIE--ICCPANPGVLLSTVSALEV 302
Query: 183 V 183
+
Sbjct: 303 L 303
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQAT 109
+H EAER+RR+++N LR ++PN K DKASLL + + ++ ELR + T
Sbjct: 524 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLT 574
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 120 (47.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 38 IMSSTSSASKVEKKSTSDACKSHKEA-ERRRRQRINSHLSTLRTLLPNTIKTDKASLLAE 96
++S+TS + K + K+ + R+RR+RIN L TL++L+PN K D +++L +
Sbjct: 120 LVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLED 179
Query: 97 VVHHVKELRSQATDVAERD 115
VH+VK L+ Q ++ D
Sbjct: 180 AVHYVKFLQLQIKLLSSED 198
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 126 (49.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 33 NGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKAS 92
+G+G + S K+S S + H +ERRRR RIN + L+ L+PN K DKAS
Sbjct: 323 SGDGRKEAGPSRTGLGSKRSRS--AEVHNLSERRRRDRINEKMRALQELIPNCNKVDKAS 380
Query: 93 LLAEVVHHVKELRSQ 107
+L E + ++K L+ Q
Sbjct: 381 MLDEAIEYLKSLQLQ 395
>UNIPROTKB|Q948Y2 [details] [associations]
symbol:Plw-OSB2 "R-type basic helix-loop-helix protein"
species:4530 "Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 HOGENOM:HOG000237985 EMBL:AB021080
ProteinModelPortal:Q948Y2 Gramene:Q948Y2 Genevestigator:Q948Y2
Uniprot:Q948Y2
Length = 451
Score = 124 (48.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 32 INGEGSIMSSTSSASKVEKKSTSDA-CKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDK 90
+ G + MS+ V +T + KSH +ERRRR+++N L++LLP+ K DK
Sbjct: 350 VGGGTAWMSNIDDRGSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDK 409
Query: 91 ASLLAEVVHHVKELRSQATDV 111
AS+LAE + ++K L + ++
Sbjct: 410 ASILAETITYLKVLEKRVKEL 430
Score = 36 (17.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 10 SYQNYWSHQNGFVQEPNWPGTLINGE 35
SY +WS W NGE
Sbjct: 33 SYTIFWSTSTSLPGVLTWNDGFYNGE 58
>UNIPROTKB|Q6YUS3 [details] [associations]
symbol:OSJNBb0088N06.15 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0048653
"anther development" evidence=IMP] [GO:0048654 "anther
morphogenesis" evidence=IMP] [GO:0048657 "tapetal cell
differentiation" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG313389
HOGENOM:HOG000033929 OMA:PRTKSCE EMBL:AP008208 EMBL:CM000139
GO:GO:0048657 EMBL:AP004078 EMBL:AP005851 RefSeq:NP_001045710.1
UniGene:Os.50000 EnsemblPlants:LOC_Os02g02820.1 GeneID:4328113
KEGG:osa:4328113 ProtClustDB:CLSN2692391 Uniprot:Q6YUS3
Length = 552
Score = 125 (49.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 57 CKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAE 113
CK+ EAER+RR+++N HL LR+L+PN K D+AS+L + + ++ L+ Q ++ +
Sbjct: 284 CKN-LEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQD 339
>TAIR|locus:2172932 [details] [associations]
symbol:NIG1 "AT5G46830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005509 "calcium ion binding" evidence=IDA]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0042538
"hyperosmotic salinity response" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0005509
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0042538
EMBL:AF252636 EMBL:AB022221 IPI:IPI00544679 RefSeq:NP_199495.1
UniGene:At.28311 ProteinModelPortal:Q9LUK7 SMR:Q9LUK7
EnsemblPlants:AT5G46830.1 GeneID:834727 KEGG:ath:AT5G46830
TAIR:At5g46830 eggNOG:NOG258937 InParanoid:Q9LUK7 OMA:HVEAERM
PhylomeDB:Q9LUK7 ProtClustDB:CLSN2914881 ArrayExpress:Q9LUK7
Genevestigator:Q9LUK7 Uniprot:Q9LUK7
Length = 511
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
+H EAER RR+++N LR ++PN K DK SLL + V ++ EL+S+A +V
Sbjct: 343 NHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENV 395
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 5 QSHHGSYQNYWSHQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAE 64
QSH + G N L G GS + + + A H AE
Sbjct: 270 QSHRQPAEACGGKNGGAAPFVNLSEVLPKGNGSGSAGNGAPKPRVRARRGQATDPHSIAE 329
Query: 65 RRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
R RR++I+ + L+ L+PN+ KT+KAS+L E++ +VK L+ Q
Sbjct: 330 RLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQLQ 372
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 123 (48.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 31 LINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDK 90
L + + M + SS + S A + H +ERRRR RIN + L+ L+P+ +TDK
Sbjct: 233 LTSTDDQTMGNKSSQRSGSTRR-SRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDK 291
Query: 91 ASLLAEVVHHVKELRSQ 107
AS+L E + ++K L+ Q
Sbjct: 292 ASILDEAIDYLKSLQMQ 308
>UNIPROTKB|Q53L62 [details] [associations]
symbol:LOC_Os11g15210 "Helix-loop-helix DNA-binding domain,
putative" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC145364 EnsemblPlants:LOC_Os11g15210.1
KEGG:dosa:Os11t0258700-00 Uniprot:Q53L62
Length = 458
Score = 123 (48.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 32 INGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKA 91
+ G G+ M++ ++ + K+H +ERRRR+++ L++++P+ K DKA
Sbjct: 217 VAGAGAWMNNADGSAATMTTDQGSSIKNHVMSERRRREKLKEMFLILKSVVPSIHKVDKA 276
Query: 92 SLLAEVVHHVKELRSQATDV 111
S+LAE + ++KEL + ++
Sbjct: 277 SILAETIAYLKELEKRVEEL 296
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 121 (47.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 39 MSSTSSASKVEKK-----STSDAC-----KSHKEAERRRRQRINSHLSTLRTLLPNTIKT 88
M +T++A KK S+S A + H AERRRR++IN L T++P K
Sbjct: 137 METTATARAAVKKGGGGGSSSSAAAPGYVQDHIIAERRRREKINQRFIELSTVIPGLKKM 196
Query: 89 DKASLLAEVVHHVKELRSQATDVAERD 115
DKA++L + V +VKEL+ + + E D
Sbjct: 197 DKATILGDAVKYVKELQEKVKTLEEED 223
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV-AERD 115
+H EAER+RR+++N LR+++PN K DKASLL + V ++ EL ++ + AER+
Sbjct: 433 NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERE 490
>TAIR|locus:2035609 [details] [associations]
symbol:MYC2 "AT1G32640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=IEP;RCA] [GO:0043619 "regulation of transcription from RNA
polymerase II promoter in response to oxidative stress"
evidence=IMP] [GO:0051090 "regulation of sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:2000068
"regulation of defense response to insect" evidence=IMP]
[GO:0009611 "response to wounding" evidence=IEP;RCA;TAS]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009620 "response to
fungus" evidence=RCA] [GO:0009694 "jasmonic acid metabolic process"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0045893 GO:GO:0009753 GO:GO:0009611 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0010200
EMBL:AC017118 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0009269
GO:GO:0043619 GO:GO:0051090 eggNOG:NOG295658 GO:GO:0009963
EMBL:X99548 EMBL:AB000875 EMBL:AJ843256 EMBL:AY037203 EMBL:BT003042
EMBL:AF251691 IPI:IPI00543978 PIR:T52293 RefSeq:NP_174541.1
UniGene:At.22648 ProteinModelPortal:Q39204 SMR:Q39204 IntAct:Q39204
STRING:Q39204 PRIDE:Q39204 EnsemblPlants:AT1G32640.1 GeneID:840158
KEGG:ath:AT1G32640 GeneFarm:1895 TAIR:At1g32640 InParanoid:Q39204
KO:K13422 OMA:KRNHPAA PhylomeDB:Q39204 ProtClustDB:CLSN2682813
Genevestigator:Q39204 GermOnline:AT1G32640 GO:GO:2000068
Uniprot:Q39204
Length = 623
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+H EAER+RR+++N LR ++PN K DKASLL + + ++ EL+S+
Sbjct: 452 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSK 500
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 122 (48.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 40 SSTSSASKVEKKST--SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEV 97
S + ++V ST S A + H +ER+RR RIN + L+ L+P K+DKAS+L E
Sbjct: 267 SEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEA 326
Query: 98 VHHVKELRSQ 107
+ ++K L+ Q
Sbjct: 327 IEYMKSLQLQ 336
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 119 (46.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 36 GSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLA 95
G + + KV + A H AER RR+RI + +L+ L+PN KTDKAS+L
Sbjct: 118 GGATAQPQTKPKVRARR-GQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLD 176
Query: 96 EVVHHVKELRSQ 107
E++ +VK L+ Q
Sbjct: 177 EIIDYVKFLQLQ 188
>TAIR|locus:2142419 [details] [associations]
symbol:AT5G10570 "AT5G10570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL353995 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488594 IPI:IPI00529696 PIR:T49982
RefSeq:NP_196619.1 UniGene:At.32362 ProteinModelPortal:Q9LXA9
SMR:Q9LXA9 EnsemblPlants:AT5G10570.1 GeneID:830922
KEGG:ath:AT5G10570 TAIR:At5g10570 eggNOG:NOG310833
HOGENOM:HOG000029066 InParanoid:Q9LXA9 OMA:SSAFDYP PhylomeDB:Q9LXA9
ProtClustDB:CLSN2914918 Genevestigator:Q9LXA9 Uniprot:Q9LXA9
Length = 315
Score = 116 (45.9 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 31 LINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDK 90
L+ S +S + K K + AERRRR+R+N LS LR+++P K D+
Sbjct: 123 LMEESKSFISIGETNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDR 182
Query: 91 ASLLAEVVHHVKELRSQATDVAE 113
S+L + + ++KEL + + E
Sbjct: 183 TSILGDAIDYMKELLDKINKLQE 205
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 164 LCCEDRPGL 172
+CC +PGL
Sbjct: 245 ICCPTKPGL 253
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 117 (46.2 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 16 SHQNGFVQEPN--W-PG-TLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRI 71
S ++ V E N W G +L N +S +S + + A R+RR++I
Sbjct: 130 SSESNTVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKI 189
Query: 72 NSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
N L TL+ L+PN K D +++L E VH+VK L+ Q
Sbjct: 190 NERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 225
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 117 (46.2 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
A H AER RR+RI + L+ L+PNT KTD+A++L E++ +VK LR Q
Sbjct: 140 ATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQ 191
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 112 (44.5 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 35 EGSIMSSTSSASKVEKKSTSDACKSHKEAE-------RRRRQRINSHLSTLRTLLPNTIK 87
E +M++ S + K S S ACK AE + RRQRIN L L+ L+PN K
Sbjct: 88 ENELMTNRSKEVRT-KMSVSKACKHSVSAESSQSYYAKNRRQRINERLRILQELIPNGTK 146
Query: 88 TDKASLLAEVVHHVKELRSQ 107
D +++L E + +VK L Q
Sbjct: 147 VDISTMLEEAIQYVKFLHLQ 166
>UNIPROTKB|Q5SMX2 [details] [associations]
symbol:P0498B01.25 "Basic helix-loop-helix protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003417 ProteinModelPortal:Q5SMX2
EnsemblPlants:LOC_Os01g09930.1 Gramene:Q5SMX2 HOGENOM:HOG000237612
OMA:IRAREHI Uniprot:Q5SMX2
Length = 412
Score = 118 (46.6 bits), Expect = 0.00010, P = 0.00010
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 40 SSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVH 99
++ ++A++ SD H +ER+RR+++N L+ +LP K DKAS+L
Sbjct: 165 AAAAAAAEAAPAPPSDNQLQHMISERKRREKLNDSFVALKAVLPTGSKKDKASILIRARE 224
Query: 100 HVKELRSQATDVAERD 115
H+K L S+ +++ E++
Sbjct: 225 HIKSLESKLSELEEKN 240
>UNIPROTKB|Q657A4 [details] [associations]
symbol:P0022F12.30 "Regulatory protein B-Peru-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP002908 EMBL:AP003310 EnsemblPlants:LOC_Os01g39580.1
Uniprot:Q657A4
Length = 370
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 22/64 (34%), Positives = 43/64 (67%)
Query: 48 VEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+ + + S + K+H +ERRRR+++N L++L+P+ K DKAS+L+E + ++KEL +
Sbjct: 177 MNRAAGSCSIKNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKELERR 236
Query: 108 ATDV 111
++
Sbjct: 237 VQEL 240
>UNIPROTKB|Q69IU0 [details] [associations]
symbol:P0498F03.15 "Putative MYC-related DNA binding
protein RD22BP1" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP006525 EMBL:AP007254
RefSeq:NP_001063693.1 UniGene:Os.86289
EnsemblPlants:LOC_Os09g34330.1 GeneID:4347601 KEGG:osa:4347601
OMA:GPTVSHV ProtClustDB:CLSN2725166 Uniprot:Q69IU0
Length = 284
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
SH EAER+RR+++N LR +P + DKASLLA+ ++ ELR++
Sbjct: 111 SHVEAERQRREKLNRRFCDLRAAVPTVSRMDKASLLADAAAYIAELRAR 159
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 42 TSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHV 101
T A + S + H AERRRR++IN + TL+ L+P K+ K S L + + +V
Sbjct: 242 TEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYV 301
Query: 102 KELRSQ 107
K L+SQ
Sbjct: 302 KSLQSQ 307
>UNIPROTKB|Q6ZBI4 [details] [associations]
symbol:P0623F08.11 "Phaseolin G-box binding protein
PG1-like" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P22415 EMBL:AP003914 EMBL:AP004632
EnsemblPlants:LOC_Os08g43070.1 KEGG:dosa:Os08t0543700-00
OMA:PVISHVE Uniprot:Q6ZBI4
Length = 263
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 60 HKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELR 105
H EAER+RR+++N LR +P + DKASLLA+ V ++ ELR
Sbjct: 95 HVEAERQRREKLNRRFCELRAAVPTVSRMDKASLLADAVDYIAELR 140
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 37 SIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAE 96
S ++++A + A H AER RR++I+ + L+ L+PN+ K DKAS+L E
Sbjct: 227 SAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDE 286
Query: 97 VVHHVKELRSQ 107
++ +VK L+ Q
Sbjct: 287 IIDYVKFLQLQ 297
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 44 SASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKE 103
S ++ K+S + + H +ERRRR RIN + L+ L+PN K DKAS+L E + ++K
Sbjct: 303 SGTRSTKRSRT--AEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKT 360
Query: 104 LRSQ 107
L+ Q
Sbjct: 361 LQLQ 364
>UNIPROTKB|Q6ETQ5 [details] [associations]
symbol:P0613F08.25 "Basic helix-loop-helix-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP004801 ProteinModelPortal:Q6ETQ5
EnsemblPlants:LOC_Os02g15760.1 Gramene:Q6ETQ5 OMA:FRILETW
Uniprot:Q6ETQ5
Length = 415
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 35 EGSIMSSTSSASKVEKKSTSD-ACK-SHKEAERRRRQRINSHLSTLRTLLPNT-IKT-DK 90
+GS SS+S A+ D A K SH ER RR+++N HL+ LR+L+P +K D+
Sbjct: 107 KGSSSSSSSPAALAAAVGDGDGAAKMSHITVERNRRKQMNEHLAVLRSLMPCFYVKRGDQ 166
Query: 91 ASLLAEVVHHVKELR 105
AS++ VV ++KEL+
Sbjct: 167 ASIIGGVVDYIKELQ 181
>TAIR|locus:2130619 [details] [associations]
symbol:AT4G16430 "AT4G16430" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:Z97341 EMBL:AL161544
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251688 EMBL:AF428368
EMBL:AY057626 EMBL:BT002301 IPI:IPI00546344 PIR:A71431
RefSeq:NP_193376.1 UniGene:At.33082 UniGene:At.4413
ProteinModelPortal:O23487 SMR:O23487 STRING:O23487 PaxDb:O23487
PRIDE:O23487 EnsemblPlants:AT4G16430.1 GeneID:827337
KEGG:ath:AT4G16430 TAIR:At4g16430 eggNOG:NOG246663
InParanoid:O23487 OMA:RSMSINF PhylomeDB:O23487
ProtClustDB:CLSN2685658 Genevestigator:O23487 Uniprot:O23487
Length = 467
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+H EAER+RR+++N LR ++PN K DKASLLA+ + ++ +++ +
Sbjct: 320 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKK 368
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 25 PNWPGTLINGEGSIMSSTSSASKVEK-KSTSD---ACKSHKEAERRRRQRINSHLSTLRT 80
PN ++ + + S + A K KS + A R+RR+RIN L TL+
Sbjct: 188 PNGSCSISDNDSSSSQEVADAGATSKGKSRAGRGAATDPQSLYARKRRERINERLKTLQN 247
Query: 81 LLPNTIKTDKASLLAEVVHHVKELRSQ 107
L+PN K D +++L E VH+VK L+ Q
Sbjct: 248 LVPNGTKVDISTMLEEAVHYVKFLQLQ 274
>UNIPROTKB|Q5SMX4 [details] [associations]
symbol:P0498B01.36 "cDNA clone:J033115I17, full insert
sequence" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008207 EMBL:AP003417 EMBL:HQ858870
EMBL:AK102964 RefSeq:NP_001042293.1 UniGene:Os.32770 GeneID:4327325
KEGG:osa:4327325 eggNOG:NOG253236 OMA:GNNGFMC
ProtClustDB:CLSN2691168 Uniprot:Q5SMX4
Length = 439
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 31/124 (25%), Positives = 58/124 (46%)
Query: 40 SSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVH 99
++ +SAS E + + + H +ER+RR+++N L+ +LP K DK S+L
Sbjct: 236 AAAASASAAEAPPSGNQLQ-HMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIRARE 294
Query: 100 HVKELRSQATDVAERDXXXXXXXXXXXXXXXXPFPGETDELTLTPYSDNGIEERRQEQQL 159
+VK L S+ +++ E++ GET P + G E +R++
Sbjct: 295 YVKSLESKLSELEEKNRELEARLASRPAAAAKNDKGET---AAAPAPEAGDETKRKDLVE 351
Query: 160 LKAT 163
++ T
Sbjct: 352 IEVT 355
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 113 (44.8 bits), Expect = 0.00029, P = 0.00029
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 52 STSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
S + + H AER+RR++IN L T++P K DKA++L++ V +VKE++ + +++
Sbjct: 185 SAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKLSEL 244
Query: 112 AE 113
+
Sbjct: 245 EQ 246
>FB|FBgn0027788 [details] [associations]
symbol:Hey "Hairy/E(spl)-related with YRPW motif"
species:7227 "Drosophila melanogaster" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0045746 "negative
regulation of Notch signaling pathway" evidence=ISS]
InterPro:IPR003650 InterPro:IPR011598 Pfam:PF00010 Pfam:PF07527
PROSITE:PS50888 PROSITE:PS51054 SMART:SM00353 EMBL:AE013599
GO:GO:0007275 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0007219 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR018352 SMART:SM00511 GO:GO:0045746
GeneTree:ENSGT00700000104130 eggNOG:NOG241271 KO:K09091
EMBL:AF151523 EMBL:BT029144 RefSeq:NP_523657.1 UniGene:Dm.516
ProteinModelPortal:Q7KM13 SMR:Q7KM13 IntAct:Q7KM13 STRING:Q7KM13
PRIDE:Q7KM13 EnsemblMetazoa:FBtr0088869 GeneID:35764
KEGG:dme:Dmel_CG11194 CTD:100188776 FlyBase:FBgn0027788
InParanoid:Q7KM13 OMA:TIEGMDI OrthoDB:EOG4MPG67 PhylomeDB:Q7KM13
GenomeRNAi:35764 NextBio:795108 Bgee:Q7KM13 Uniprot:Q7KM13
Length = 425
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 38/127 (29%), Positives = 61/127 (48%)
Query: 3 PFQSHHGSYQNY-WSHQNGFVQE-PNWPGTLINGEGSIMSSTSSASKVEKKSTSDACK-- 58
P QSHH ++ N+ H G + TL + + S S+ + S +C+
Sbjct: 40 PPQSHHSAHSNHSHGHSQGHSHGIGSLKRTLSESDCDDLYSEESSKEQISPSEPGSCQLM 99
Query: 59 SHKEA----ERRRRQRINSHLSTLRTLLPN------TIKTDKASLLAEVVHHVKELRSQA 108
S K+ E++RR RINS L+ L+ L+P+ + K +KA +L V H+K L+S+
Sbjct: 100 SRKKRRGVIEKKRRDRINSSLTELKRLVPSAYEKQGSAKLEKAEILQLTVEHLKSLQSKT 159
Query: 109 TDVAERD 115
D D
Sbjct: 160 LDSLSYD 166
>TAIR|locus:2090847 [details] [associations]
symbol:ICE1 "AT3G26744" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA;TAS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0050826 "response to freezing"
evidence=RCA;IMP] [GO:0010440 "stomatal lineage progression"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048522 "positive regulation of
cellular process" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0050826 EMBL:AB016889 GO:GO:0010440
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB026648 EMBL:AY195621
EMBL:AY079016 EMBL:BT020379 EMBL:AK228443 IPI:IPI00518051
IPI:IPI00656676 RefSeq:NP_001030774.1 RefSeq:NP_001030776.2
RefSeq:NP_189309.2 UniGene:At.25302 ProteinModelPortal:Q9LSE2
SMR:Q9LSE2 STRING:Q9LSE2 PaxDb:Q9LSE2 PRIDE:Q9LSE2
EnsemblPlants:AT3G26744.1 EnsemblPlants:AT3G26744.2
EnsemblPlants:AT3G26744.4 GeneID:822287 KEGG:ath:AT3G26744
TAIR:At3g26744 eggNOG:NOG236974 HOGENOM:HOG000085036
InParanoid:Q9LSE2 OMA:NSESSGM PhylomeDB:Q9LSE2
ProtClustDB:CLSN2690572 Genevestigator:Q9LSE2 GermOnline:AT3G26744
Uniprot:Q9LSE2
Length = 494
Score = 113 (44.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 26 NWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNT 85
N+ IN G S + K K+ AERRRR+++N L LR+++P
Sbjct: 275 NYESDEINESGKAAESVQIGGGGKGKKKGMPAKNLM-AERRRRKKLNDRLYMLRSVVPKI 333
Query: 86 IKTDKASLLAEVVHHVKELRSQATDV 111
K D+AS+L + + ++KEL + D+
Sbjct: 334 SKMDRASILGDAIDYLKELLQRINDL 359
Score = 38 (18.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 150 IEERRQEQQLLKATLCCEDRPGL 172
+E R +E + + + C RPGL
Sbjct: 411 VEVRLREGRAVNIHMFCGRRPGL 433
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 43 SSASKVEKKSTSDACKSHKEAE-------RRRRQRINSHLSTLRTLLPNTIKTDKASLLA 95
S S V KS A H+ A R+RR+RIN L L+ L+PN K D +++L
Sbjct: 208 SQESPVAAKSNGKAQSGHRSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLE 267
Query: 96 EVVHHVKELRSQ 107
E +H+VK L+ Q
Sbjct: 268 EAMHYVKFLQLQ 279
>UNIPROTKB|Q58GE3 [details] [associations]
symbol:UDT1 "Undeveloped tapetum 1" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IDA]
[GO:0048656 "tapetal layer formation" evidence=IMP] [GO:0048658
"tapetal layer development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048656 EMBL:AY953870
STRING:Q58GE3 KEGG:dosa:Os07t0549600-01 Gramene:Q58GE3
HOGENOM:HOG000084429 Uniprot:Q58GE3
Length = 234
Score = 108 (43.1 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 33 NGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKAS 92
+GE ++A+ + K+ S + EAERRRR R+N ++ LR ++P K K +
Sbjct: 43 DGEEEQQQQQAAAAAMGKEFKS----KNLEAERRRRGRLNGNIFALRAVVPKITKMSKEA 98
Query: 93 LLAEVVHHVKELRSQATDV 111
L++ + H+K L+++ ++
Sbjct: 99 TLSDAIEHIKNLQNEVLEL 117
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 35 EGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLL 94
+GS++ S S+ K+ + D + +RRR+RIN L L+ L+PN K D +++L
Sbjct: 144 DGSVVLKQSDNSRGHKQCSKDTQSLYA---KRRRERINERLRILQQLVPNGTKVDISTML 200
Query: 95 AEVVHHVKELRSQ 107
E V +VK L+ Q
Sbjct: 201 EEAVQYVKFLQLQ 213
>TAIR|locus:2020003 [details] [associations]
symbol:AT1G10610 "AT1G10610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC009398 Gene3D:4.10.280.10
SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215 EMBL:AC007067
HOGENOM:HOG000033929 EMBL:AK229375 EMBL:AF488620 IPI:IPI00786098
PIR:F86239 RefSeq:NP_172531.2 UniGene:At.42172
ProteinModelPortal:Q0WNR2 SMR:Q0WNR2 EnsemblPlants:AT1G10610.1
GeneID:837604 KEGG:ath:AT1G10610 TAIR:At1g10610 eggNOG:NOG318339
OMA:GIHGEVV PhylomeDB:Q0WNR2 ProtClustDB:CLSN2920225
Genevestigator:Q0WNR2 Uniprot:Q0WNR2
Length = 441
Score = 112 (44.5 bits), Expect = 0.00056, P = 0.00056
Identities = 28/102 (27%), Positives = 53/102 (51%)
Query: 5 QSHHGSYQNYWSHQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKK--STSDACKSHKE 62
Q+ G+Y N + ++E P ++N E ++ ++ SK KK T + +
Sbjct: 210 QNLFGNYPNASCVE--ILREEQTPCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLH 267
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKEL 104
+ER+RR+RIN + LR ++P K +K + ++ V ++ EL
Sbjct: 268 SERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYINEL 309
>UNIPROTKB|Q336V8 [details] [associations]
symbol:Os10g0544200 "Os10g0544200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000086 EMBL:AP008216
EMBL:CM000147 Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG245311
EMBL:AK063669 RefSeq:NP_001065200.1 UniGene:Os.46563
EnsemblPlants:LOC_Os10g39750.1 GeneID:4349271 KEGG:osa:4349271
ProtClustDB:CLSN2693493 Uniprot:Q336V8
Length = 380
Score = 111 (44.1 bits), Expect = 0.00058, P = 0.00058
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKEL 104
AERRRR+R+N LS LR+++P K D+ S+L + + +VKEL
Sbjct: 200 AERRRRKRLNDRLSMLRSVVPRISKMDRTSILGDTIGYVKEL 241
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 103 (41.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 57 CKSHKE--AERRRRQRINSHLSTLRTLLPNTIK-TDKASLLAEVVHHVKELRSQATDVAE 113
C +H AER RR RI+ + L+ L+PN K T+ A +L E V +VK L+SQ ++ E
Sbjct: 187 CATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTE 246
Query: 114 R 114
+
Sbjct: 247 Q 247
Score = 39 (18.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 14 YWSHQNG-FVQEPNWPGTLINGEGS 37
Y HQ G F ++ + P ++G GS
Sbjct: 87 YNHHQGGGFHRQNSSPADFLSGSGS 111
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 38 IMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEV 97
I+ T A + + S S+A + H AER+RR+++ L L+P K DKAS+L +
Sbjct: 107 IIRGTKRAQSLTR-SQSNA-QDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDA 164
Query: 98 VHHVKELRSQATDVAER 114
+ H+K L+ + E+
Sbjct: 165 IKHIKYLQESVKEYEEQ 181
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 42 TSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHV 101
TS +V + A H AER RR+RI + L+ L+P KTD+A+++ E+V +V
Sbjct: 140 TSIRPRVRARR-GQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYV 198
Query: 102 KELRSQ 107
K LR Q
Sbjct: 199 KFLRLQ 204
>TAIR|locus:2118524 [details] [associations]
symbol:TT8 "AT4G09820" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009962 "regulation of flavonoid
biosynthetic process" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:2000029 "regulation
of proanthocyanidin biosynthetic process" evidence=IEP] [GO:0010026
"trichome differentiation" evidence=IMP] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL161516 GO:GO:0009813
EMBL:AL049482 HOGENOM:HOG000237985 GO:GO:0010026 GO:GO:2000029
EMBL:AJ277509 EMBL:DQ446813 EMBL:DQ653187 IPI:IPI00530243
RefSeq:NP_192720.2 UniGene:At.10175 ProteinModelPortal:Q9FT81
SMR:Q9FT81 IntAct:Q9FT81 STRING:Q9FT81 PaxDb:Q9FT81 PRIDE:Q9FT81
EnsemblPlants:AT4G09820.1 GeneID:826571 KEGG:ath:AT4G09820
TAIR:At4g09820 eggNOG:NOG249918 InParanoid:Q9FT81 OMA:NEVDSKT
PhylomeDB:Q9FT81 ProtClustDB:CLSN2681600 Genevestigator:Q9FT81
Uniprot:Q9FT81
Length = 518
Score = 112 (44.5 bits), Expect = 0.00071, P = 0.00071
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
SH AERRRR+++N TLR+++P K DK S+L + + +V LR + ++
Sbjct: 363 SHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHEL 415
>UNIPROTKB|Q2R3F6 [details] [associations]
symbol:Os11g0523700 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0050826
GO:GO:0010440 Gene3D:4.10.280.10 SUPFAM:SSF47459
RefSeq:NP_001067987.2 UniGene:Os.56356
EnsemblPlants:LOC_Os11g32100.1 GeneID:4350609 KEGG:osa:4350609
OMA:DGKDSNA Uniprot:Q2R3F6
Length = 524
Score = 112 (44.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 42/161 (26%), Positives = 69/161 (42%)
Query: 35 EGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLL 94
E + S+ + K +KK + AERRRR+++N L LR+++P K D+AS+L
Sbjct: 315 ESNANSTVTGDGKGKKKGMP---AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASIL 371
Query: 95 AEVVHHVKELRSQATDVA-ERDXXXXXXXXXXXXXXXXPF-------PGETDELTLTPY- 145
+ + ++KEL + D+ E + P P E + P
Sbjct: 372 GDAIEYLKELLQKINDLQNELESSPATSSLPPTPTSFHPLTPTLPTLPSRIKE-EICPSA 430
Query: 146 --SDNG----IEERRQEQQLLKATLCCEDRPGLNRELTRAI 180
S G +E R +E + + + C RPGL RA+
Sbjct: 431 LPSPTGQQPRVEVRLREGRAVNIHMFCARRPGLLLSAMRAV 471
Score = 37 (18.1 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 166 CEDRPGLNRELTRAISLVRA 185
C+D PGL E +A+ + A
Sbjct: 499 CKDGPGLLPEEIKAVLMQSA 518
>TAIR|locus:2205455 [details] [associations]
symbol:BIM2 "AT1G69010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC011665 EMBL:BT002352 EMBL:AY080650 EMBL:AY086798
EMBL:AF488627 IPI:IPI00519398 PIR:E96714 RefSeq:NP_177064.1
UniGene:At.35458 ProteinModelPortal:Q9CAA4 SMR:Q9CAA4 PaxDb:Q9CAA4
PRIDE:Q9CAA4 EnsemblPlants:AT1G69010.1 GeneID:843233
KEGG:ath:AT1G69010 TAIR:At1g69010 eggNOG:NOG246683
HOGENOM:HOG000070523 InParanoid:Q9CAA4 OMA:YVQYLQE PhylomeDB:Q9CAA4
ProtClustDB:CLSN2682349 Genevestigator:Q9CAA4 GermOnline:AT1G69010
Uniprot:Q9CAA4
Length = 311
Score = 106 (42.4 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 35 EGSIMSSTSSASKVEKKST-SDACKS-HKEAERRRRQRINSHLSTLRTLLPNTI-KTDKA 91
EG ++T +++ K++ + A +S H E+RRR +IN LR L+PN+ K D A
Sbjct: 23 EGPSSNTTVHSNRDSKENDKASAIRSKHSVTEQRRRSKINERFQILRELIPNSEQKRDTA 82
Query: 92 SLLAEVVHHVKELRSQ 107
S L EV+ +V+ L+ +
Sbjct: 83 SFLLEVIDYVQYLQEK 98
Score = 37 (18.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 132 PFPGETDELTLT 143
PFPG+ ++ T+T
Sbjct: 145 PFPGKFEDNTVT 156
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 108 (43.1 bits), Expect = 0.00086, P = 0.00086
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
A H AER RR+RI + +L+ L+P KTD+A+++ E+V +VK LR Q
Sbjct: 151 ATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQ 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 260 217 0.00090 112 3 11 23 0.41 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 595 (63 KB)
Total size of DFA: 166 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.94u 0.15s 20.09t Elapsed: 00:00:01
Total cpu time: 19.95u 0.15s 20.10t Elapsed: 00:00:01
Start: Sat May 11 08:06:57 2013 End: Sat May 11 08:06:58 2013