BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024930
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LET0|BH107_ARATH Putative transcription factor bHLH107 OS=Arabidopsis thaliana
GN=BHLH107 PE=2 SV=1
Length = 230
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 19/172 (11%)
Query: 58 KSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDWN 117
++HKEAER+RR RINSHL+ LR LL KTDK++LLA+VV VKEL+ Q ++ +
Sbjct: 47 RNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTLEITDE--- 103
Query: 118 SCWSSSSGSEEESWPFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRELT 177
P ETDE+++ D + R + + K + CCEDRP L ++L
Sbjct: 104 --------------TIPSETDEISVLNIEDCSRGDDR--RIIFKVSFCCEDRPELLKDLM 147
Query: 178 RAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229
+ ++ + A+MTTVGGRT+ V+V+ G + + LQ ALK ++E
Sbjct: 148 ETLKSLQMETLFADMTTVGGRTRNVLVVAADKEHHGVQSVNFLQNALKSLLE 199
>sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1
SV=1
Length = 368
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 19/150 (12%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
A KSH EAERRRR+RIN+HL+ LR++LPNT KTDKASLLAEV+ HVKEL+ + + ++E +
Sbjct: 174 ASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVISETN 233
Query: 116 WNSCWSSSSGSEEESWPFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNRE 175
P E+DELT+ + EE + ++KA+LCCEDR L +
Sbjct: 234 L----------------VPTESDELTVAFTEE---EETGDGRFVIKASLCCEDRSDLLPD 274
Query: 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVI 205
+ + + +R + ++AE+TTVGGR K V+ +
Sbjct: 275 MIKTLKAMRLKTLKAEITTVGGRVKNVLFV 304
>sp|Q9LS08|BH032_ARATH Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1
SV=1
Length = 344
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 55/260 (21%)
Query: 29 GTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKT 88
G+ +G IM S+ ++ K+ + A KSH EAERRRR+RIN+HL+ LR++LPNT KT
Sbjct: 106 GSSFGFDGEIMGKLSAQEVMDAKALA-ASKSHSEAERRRRERINTHLAKLRSILPNTTKT 164
Query: 89 DKASLLAEVVHHVKELRSQATDVAERDWNSCWSSSSGSEEESWPFPGETDELTL-TPYSD 147
DKASLLAEV+ H+KEL+ Q + + +++ P E D+LT+ + Y+D
Sbjct: 165 DKASLLAEVIQHMKELKRQTSQIT----------------DTYQVPTECDDLTVDSSYND 208
Query: 148 NGIEERRQEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVI-- 205
+ +++A+ CC+DR L ++ A+ +R R ++AE+ TVGGR K ++ +
Sbjct: 209 ------EEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNILFLSR 262
Query: 206 ---------------------EWVGGGGGNEEMAVLQRALKDIVEN-------RASGYGL 237
++ N ++ ++ ALK ++E L
Sbjct: 263 EYDDEEDHDSYRRNFDGDDVEDYDEERMMNNRVSSIEEALKAVIEKCVHNNDESNDNNNL 322
Query: 238 GRIGS-GIKRARVGGLVDEC 256
+ S GIKR R +V+ C
Sbjct: 323 EKSSSGGIKRQRTSKMVNRC 342
>sp|O80674|BH106_ARATH Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106
PE=2 SV=1
Length = 253
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 24/177 (13%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
A ++HKEAERRRR+RINSHL+ LR +L KTDKA+LLA+VV V+EL+ Q + ++ D
Sbjct: 67 ALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSD 126
Query: 116 WNSCWSSSSGSEEESWPFPGETDELTLT---PYSDNGIEERRQEQQLLKATLCCEDRPGL 172
P ETDE+++ YS++G + KA+LCCEDR L
Sbjct: 127 QT--------------LLPSETDEISVLHFGDYSNDG-------HIIFKASLCCEDRSDL 165
Query: 173 NRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229
+L + + + +RAEM T+GGRT++V+V+ G E + LQ ALK ++E
Sbjct: 166 LPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFLQNALKSLLE 222
>sp|P0CB25|BH131_ARATH Transcription factor bHLH131 OS=Arabidopsis thaliana GN=BHLH131
PE=2 SV=1
Length = 256
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 29/175 (16%)
Query: 39 MSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVV 98
S T SK E K A K H +AERRRR RINS +TLRT+LPN +K DKAS+L E V
Sbjct: 77 FSVTKPKSKTESKEV--AAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETV 134
Query: 99 HHVKELRSQATDVAERDWNSCWSSSSGSEEESWPFPGETDELTLTPYSDNGIEERRQEQQ 158
+ EL+ D+ P D L L ++N +
Sbjct: 135 RYFNELKKMVQDIPTT-------------------PSLEDNLRLDHCNNN--------RD 167
Query: 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGG 213
L + C DR GL E+ ++ V+A+AVRAE+ TVGGRTK + ++ V G G
Sbjct: 168 LARVVFSCSDREGLMSEVAESMKAVKAKAVRAEIMTVGGRTKCALFVQGVNGNEG 222
>sp|Q9XEF0|BH051_ARATH Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2
SV=1
Length = 254
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 23/152 (15%)
Query: 58 KSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDWN 117
+SH+ AE+RRR RINSHL+ LR L+PN+ K DKA+LLA V+ VKEL+ +A
Sbjct: 65 RSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAA-------- 116
Query: 118 SCWSSSSGSEEESWPF---PGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDRPGLNR 174
ES F P E DE+T+ P + + E + KA+ CCED+P
Sbjct: 117 -----------ESPIFQDLPTEADEVTVQPETISDFES-NTNTIIFKASFCCEDQPEAIS 164
Query: 175 ELTRAISLVRARAVRAEMTTVGGRTKTVVVIE 206
E+ R ++ ++ ++AE+ +VGGR + +++
Sbjct: 165 EIIRVLTKLQLETIQAEIISVGGRMRINFILK 196
>sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2
SV=1
Length = 399
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 42/56 (75%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQAT 109
S A H ++ER+RR +IN + TL+ L+PN+ KTDKAS+L EV+ ++K+L++Q +
Sbjct: 212 SRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVS 267
>sp|Q9SVU6|BH023_ARATH Transcription factor bHLH23 OS=Arabidopsis thaliana GN=BHLH23 PE=2
SV=1
Length = 413
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
S A HK +ERRRRQ+IN + L+ LLP KTD++S+L +V+ +VK L+SQ
Sbjct: 276 SRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQ 329
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 35 EGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLL 94
+G S+T++ + +K+ +D ++ +ERRRR R+ L LR+L+PN K DKAS++
Sbjct: 108 DGDDSSATTTNNDGTRKTKTDRSRTLI-SERRRRGRMKDKLYALRSLVPNITKMDKASIV 166
Query: 95 AEVVHHVKELRSQA----TDVA--ERDWNSC--WSSSSGSEEESWPFPG 135
+ V +V+EL+SQA +D+A E NS + + +++ PF G
Sbjct: 167 GDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQPFRG 215
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+H EAER+RR+++N +LR ++PN K DKASLL + + ++ EL+S+
Sbjct: 416 NHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSK 464
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+H EAER+RR+++N +LR ++PN K DKASLL + + ++ EL+S+
Sbjct: 415 NHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSK 463
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
A + H +E+RRR RIN + L++L+PN+ KTDKAS+L E + ++K+L+ Q + R+
Sbjct: 198 AAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRN 257
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQAT 109
+H EAER+RR+++N LR ++PN K DKASLL + + ++ EL+S+
Sbjct: 452 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVV 502
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2
SV=1
Length = 297
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 41 STSSASKVEKKST-----SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLA 95
ST+SA V +K A H AER RR+RI + +L+ L+PNT KTDKAS+L
Sbjct: 86 STTSAPVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLD 145
Query: 96 EVVHHVKELRSQ 107
E++ +V+ L+ Q
Sbjct: 146 EIIEYVRFLQLQ 157
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQA 108
+H EAER+RR+++N LR+++PN K DKASLL + + ++KEL+ +
Sbjct: 395 NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKV 444
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2
SV=1
Length = 511
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 55 DACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
D +H EAER RR+++N LR ++PN K DK SLL + V ++ EL+S+A +V
Sbjct: 339 DKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENV 395
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 39/51 (76%)
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAE 113
AERRRR+++N L LR+L+P K D+AS+L + +++VKEL+++A ++ +
Sbjct: 318 AERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQD 368
>sp|Q700E3|BH027_ARATH Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2
SV=1
Length = 263
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 11 YQNYWS----HQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERR 66
Y+NYW QN ++ +WP S + +S + +TS A + +ER
Sbjct: 8 YKNYWETTMFFQNQELEFDSWPM------EEAFSGSGESSSPDGAATSPASSKNVVSERN 61
Query: 67 RRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
RRQ++N L LR+++PN K DKAS++ + + +++EL Q
Sbjct: 62 RRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQ 102
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+H EAER+RR+++N LR+++PN K DKASLL + V ++ EL ++
Sbjct: 433 NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAK 481
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 60 HKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVA 112
H +E++RR +IN + L+ L+PN+ KTDKAS+L E + ++K+L+ Q +A
Sbjct: 98 HNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTLA 150
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2
SV=1
Length = 423
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 42 TSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHV 101
T+ + K+ A SH EAE++RR+++N LR ++P + DKASLL++ V ++
Sbjct: 232 TTRVAAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYI 291
Query: 102 KELRSQATDV 111
+ L+S+ D+
Sbjct: 292 ESLKSKIDDL 301
>sp|Q8S3F1|BH020_ARATH Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1
Length = 320
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 KSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAE 113
K H AER+RRQ++N L L LLP KTDKA++L + + H+K+L+ + + E
Sbjct: 131 KEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEE 186
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
A H AER RR+RI + +L+ L+PN KTDKAS+L E++ +VK L+ Q ++
Sbjct: 137 ATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 196
Query: 116 WNSCWSSSSGSEEES 130
S+SS E++
Sbjct: 197 LGGAASASSQISEDA 211
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERDWNSCWSS 122
AERRRR+++N L LR+++P K D+AS+L + + ++KEL + D+ ++ SS
Sbjct: 271 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSS 330
Query: 123 SSGS-------------EEESWPFPGETDELTLTPYSDNGIEERRQEQQLLKATLCCEDR 169
SS +EE P + L +E R +E + + + C R
Sbjct: 331 SSLHPLTPTPQTLSYRVKEELCP----SSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRR 386
Query: 170 PGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229
PGL RA+ + +A ++ G V E E+ VL +K ++
Sbjct: 387 PGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQC-----QEDHDVLPEQIKAVLL 441
Query: 230 NRASGYGL 237
+ A GL
Sbjct: 442 DTAGYAGL 449
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
Length = 524
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 60 HKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
H +ERRRR RIN + L+ L+PN K DKAS+L E + ++K L+ Q
Sbjct: 348 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQ 395
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
A H AER RR+RI + L+ L+PN KTDKAS+L E++ +VK L+ Q
Sbjct: 145 ATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQ 196
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2
SV=1
Length = 467
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
+H EAER+RR+++N LR ++PN K DKASLLA+ + ++ +++ +
Sbjct: 320 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKK 368
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1
Length = 612
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 37/50 (74%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELR 105
A K+H +ER+RR+++N L++LLP+ + +KAS+LAE + ++KEL+
Sbjct: 415 ATKNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQ 464
>sp|Q7XHI7|BH127_ARATH Transcription factor bHLH127 OS=Arabidopsis thaliana GN=BHLH127
PE=2 SV=1
Length = 307
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
S A + H AERRRR++IN + TL+ L+P K+ K S+L +V+ +VK L Q
Sbjct: 149 SRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQ 202
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1
Length = 610
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 22 VQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTL 81
++EP + G S A+ ++ + K+H +ER+RR+++N L++L
Sbjct: 379 IEEPQRLLKKVVAGGGAWESCGGATGAAQEMSGTGTKNHVMSERKRREKLNEMFLVLKSL 438
Query: 82 LPNTIKTDKASLLAEVVHHVKELR 105
LP+ + +KAS+LAE + ++KEL+
Sbjct: 439 LPSIHRVNKASILAETIAYLKELQ 462
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
AERRRR+++N L LR+++P K D+AS+L + + ++KEL + D+
Sbjct: 311 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 359
>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139
PE=4 SV=1
Length = 223
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 65 RRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
R+RR+RIN L TL++L+PN K D +++L + VH+VK L+ Q ++ D
Sbjct: 148 RKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSED 198
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
S A + H +ER+RR RIN + L+ L+P K+DKAS+L E + ++K L+ Q
Sbjct: 283 SRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQ 336
>sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2
SV=1
Length = 441
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 5 QSHHGSYQNYWSHQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKK--STSDACKSHKE 62
Q+ G+Y N + ++E P ++N E ++ ++ SK KK T + +
Sbjct: 210 QNLFGNYPNASCVE--ILREEQTPCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLH 267
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKEL 104
+ER+RR+RIN + LR ++P K +K + ++ V ++ EL
Sbjct: 268 SERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYINEL 309
>sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
Length = 416
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 60 HKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQA 108
HK ER+RR N + L+ LLPN K DKASLL E + +++ L+ Q
Sbjct: 234 HKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQV 282
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana
GN=BHLH56 PE=4 SV=2
Length = 445
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 54 SDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
S + H AERRRR++IN + TL+ L+P K+ K S L + + +VK L+SQ
Sbjct: 254 SRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQ 307
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 59 SHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
SH AERRRR+++N TLR+++P K DK S+L + + +V LR + ++
Sbjct: 363 SHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHEL 415
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 65 RRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAERD 115
R+RR++IN L TL+ L+PN K D +++L E VH+VK L+ Q ++ D
Sbjct: 183 RKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDD 233
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 65 RRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
R+RR+RIN L L+ L+PN K D +++L E VH+VK L+ Q
Sbjct: 282 RKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQ 324
>sp|Q570R7|PIF7_ARATH Transcription factor PIF7 OS=Arabidopsis thaliana GN=BHLH72 PE=1
SV=2
Length = 366
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAER 114
A H E+ERRRR RIN + TL+ LLP K DK S+L +V+ H+K+L++Q ++ R
Sbjct: 167 AAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSLR 225
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 13 NYWS-----HQNGFVQEPNWPGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRR 67
NYW F + +WP E +I S S+S + ++S A K + +ER R
Sbjct: 11 NYWEPSSFLQNEDFEYDRSWPL-----EEAISGSYDSSSP-DGAASSPASK-NIVSERNR 63
Query: 68 RQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELR 105
RQ++N L LR+++PN K DKAS++ + + +++ L+
Sbjct: 64 RQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQ 101
>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica
GN=LAX PE=1 SV=1
Length = 215
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 63 AERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQAT 109
A R RR RI+ LR+L+P K D S+L + +H+VK L++Q T
Sbjct: 48 AARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVT 94
>sp|Q9LEZ3|BIM1_ARATH Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2
Length = 529
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 60 HKEAERRRRQRINSHLSTLRTLLPNT-IKTDKASLLAEVVHHVKELRSQA 108
H E+RRR +IN LR L+PN+ K DKAS L EV+ +++ L+ +A
Sbjct: 281 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKA 330
>sp|P49379|CBF1_KLULA Centromere-binding protein 1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CBF1 PE=3 SV=2
Length = 359
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 58 KSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQAT 109
+SHKE ERRRRQ IN+ + L LLP +T KA++L+ ++++++ T
Sbjct: 252 ESHKEVERRRRQNINTAIEKLSDLLP-VKETSKAAILSRAAEYIQKMKETET 302
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1
SV=1
Length = 596
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 39/59 (66%)
Query: 53 TSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDV 111
T + +H +E++RR+++N TLR+++P+ K DK S+L + + ++++L+ + ++
Sbjct: 399 TPEETGNHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana
GN=BHLH86 PE=4 SV=2
Length = 307
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 28 PGTLINGEGSIMSSTSSASKVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIK 87
P T N + S S+ + K++ K+T+ A + RR+RI+ L L+ L+PN K
Sbjct: 180 PFTGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTK 239
Query: 88 TDKASLLAEVVHHVKELRSQATDVAERDWNSCWSSSSG 125
D ++L + + +VK L+ Q +A ++ W + G
Sbjct: 240 VDLVTMLEKAIGYVKFLQVQVKVLAADEF---WPAQGG 274
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 65 RRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQ 107
R+RR+RIN L L+ L+PN K D +++L E V +VK L+ Q
Sbjct: 253 RKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQ 295
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1
SV=1
Length = 637
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 55 DACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKEL 104
D +H E++RR+++N TLR ++P+ K DK S+L + + +++EL
Sbjct: 437 DETGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQEL 486
>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2
SV=1
Length = 373
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 47 KVEKKSTSDACKSHKEAERRRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRS 106
K ++K+ + A R+RR+RI+ + L+TL+P K D AS+L E +++K LR+
Sbjct: 267 KPKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRA 326
Query: 107 QA 108
Q
Sbjct: 327 QV 328
>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1
SV=1
Length = 259
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 57 CKSHKE--AERRRRQRINSHLSTLRTLLPNTIK-TDKASLLAEVVHHVKELRSQATDVAE 113
C +H AER RR RI+ + L+ L+PN K T+ A +L E V +VK L+SQ ++ E
Sbjct: 187 CATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTE 246
Query: 114 R 114
+
Sbjct: 247 Q 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,900,665
Number of Sequences: 539616
Number of extensions: 3713499
Number of successful extensions: 10114
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 9969
Number of HSP's gapped (non-prelim): 289
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)