Query 024930
Match_columns 260
No_of_seqs 231 out of 1341
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 3.5E-13 7.5E-18 93.8 5.8 53 56-108 4-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 2.7E-13 5.9E-18 93.2 5.0 49 57-105 2-55 (55)
3 smart00353 HLH helix loop heli 99.4 1.2E-12 2.5E-17 89.1 5.8 49 61-109 1-52 (53)
4 KOG1318 Helix loop helix trans 99.1 3.4E-10 7.5E-15 106.0 9.5 56 56-111 233-292 (411)
5 KOG1319 bHLHZip transcription 99.1 1.1E-10 2.3E-15 97.8 4.6 59 57-115 63-128 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 99.1 1.6E-09 3.5E-14 79.2 9.5 71 160-230 2-74 (75)
7 cd04896 ACT_ACR-like_3 ACT dom 99.0 5.7E-09 1.2E-13 76.3 9.0 70 161-231 2-75 (75)
8 cd04895 ACT_ACR_1 ACT domain-c 98.9 2.9E-08 6.3E-13 72.0 9.6 52 160-211 2-53 (72)
9 cd04927 ACT_ACR-like_2 Second 98.8 3.6E-08 7.7E-13 72.2 9.4 70 160-229 1-72 (76)
10 KOG4304 Transcriptional repres 98.7 6.5E-09 1.4E-13 92.5 3.2 54 57-110 33-94 (250)
11 cd04900 ACT_UUR-like_1 ACT dom 98.7 1.2E-07 2.5E-12 68.7 9.1 68 160-227 2-72 (73)
12 cd04925 ACT_ACR_2 ACT domain-c 98.6 5.5E-07 1.2E-11 65.4 9.9 69 161-229 2-73 (74)
13 cd04928 ACT_TyrKc Uncharacteri 98.5 1E-06 2.2E-11 63.2 9.5 66 160-229 2-68 (68)
14 KOG3561 Aryl-hydrocarbon recep 98.4 3.5E-07 7.6E-12 92.3 6.2 51 57-107 21-75 (803)
15 cd04899 ACT_ACR-UUR-like_2 C-t 98.4 4.1E-06 8.9E-11 59.3 9.0 67 161-227 2-69 (70)
16 KOG2483 Upstream transcription 98.2 2.8E-06 6.1E-11 74.7 7.0 57 55-111 58-117 (232)
17 KOG0561 bHLH transcription fac 98.2 1.9E-06 4.2E-11 77.3 4.4 56 56-111 60-117 (373)
18 cd04926 ACT_ACR_4 C-terminal 98.1 2.9E-05 6.3E-10 56.0 9.4 67 160-229 2-68 (72)
19 PRK05007 PII uridylyl-transfer 98.1 2.3E-05 5E-10 81.4 11.0 75 156-230 805-880 (884)
20 PF13740 ACT_6: ACT domain; PD 98.0 0.0001 2.2E-09 53.6 10.1 68 159-231 2-69 (76)
21 cd04873 ACT_UUR-ACR-like ACT d 97.9 0.00013 2.8E-09 51.1 9.1 66 161-226 2-68 (70)
22 PRK00275 glnD PII uridylyl-tra 97.9 7.5E-05 1.6E-09 77.7 11.0 77 157-233 812-890 (895)
23 PRK01759 glnD PII uridylyl-tra 97.9 7E-05 1.5E-09 77.6 10.4 73 156-228 780-853 (854)
24 PRK04374 PII uridylyl-transfer 97.8 0.00013 2.9E-09 75.6 11.1 74 156-229 793-867 (869)
25 PRK05092 PII uridylyl-transfer 97.8 0.00048 1E-08 72.1 15.0 77 157-233 841-919 (931)
26 cd04893 ACT_GcvR_1 ACT domains 97.7 0.00043 9.2E-09 50.5 9.8 65 160-229 2-66 (77)
27 KOG2588 Predicted DNA-binding 97.7 1.3E-05 2.8E-10 81.6 2.2 59 55-113 275-334 (953)
28 PF01842 ACT: ACT domain; Int 97.7 0.00042 9E-09 47.9 8.8 64 161-228 2-65 (66)
29 PRK03059 PII uridylyl-transfer 97.7 0.00019 4.1E-09 74.5 9.6 72 157-229 784-855 (856)
30 PLN03217 transcription factor 97.6 0.00012 2.6E-09 54.1 5.0 51 69-119 20-76 (93)
31 PRK03381 PII uridylyl-transfer 97.6 0.00029 6.3E-09 72.3 9.5 68 157-224 705-772 (774)
32 TIGR01693 UTase_glnD [Protein- 97.5 0.00056 1.2E-08 71.0 10.5 73 156-228 776-849 (850)
33 TIGR01693 UTase_glnD [Protein- 97.5 0.0006 1.3E-08 70.7 10.1 75 157-231 666-743 (850)
34 cd04872 ACT_1ZPV ACT domain pr 97.5 0.00066 1.4E-08 50.6 7.7 73 160-235 2-74 (88)
35 PRK03381 PII uridylyl-transfer 97.5 0.00066 1.4E-08 69.7 10.2 71 158-230 598-668 (774)
36 PRK00194 hypothetical protein; 97.4 0.00088 1.9E-08 50.0 8.1 74 159-235 3-76 (90)
37 PF13291 ACT_4: ACT domain; PD 97.4 0.00092 2E-08 48.7 7.9 65 157-225 4-70 (80)
38 KOG4029 Transcription factor H 97.4 0.00014 3.1E-09 64.0 4.1 59 55-113 108-170 (228)
39 cd04875 ACT_F4HF-DF N-terminal 97.4 0.0029 6.2E-08 45.4 10.0 67 162-231 2-70 (74)
40 PRK01759 glnD PII uridylyl-tra 97.4 0.00094 2E-08 69.3 10.2 76 157-232 675-752 (854)
41 cd04869 ACT_GcvR_2 ACT domains 97.4 0.0023 5E-08 46.4 9.4 66 162-231 2-73 (81)
42 cd04870 ACT_PSP_1 CT domains f 97.4 0.002 4.3E-08 46.6 8.8 65 162-230 2-66 (75)
43 PRK05007 PII uridylyl-transfer 97.3 0.0012 2.6E-08 68.8 10.3 75 157-231 699-775 (884)
44 COG2844 GlnD UTP:GlnB (protein 97.3 0.001 2.3E-08 67.4 9.4 70 157-229 789-858 (867)
45 KOG3960 Myogenic helix-loop-he 97.2 0.001 2.3E-08 58.6 6.6 60 56-115 118-179 (284)
46 PRK00275 glnD PII uridylyl-tra 97.2 0.002 4.3E-08 67.3 9.7 74 158-231 703-780 (895)
47 PRK03059 PII uridylyl-transfer 97.2 0.0019 4.2E-08 67.0 9.5 74 158-231 677-752 (856)
48 PRK04374 PII uridylyl-transfer 97.0 0.004 8.6E-08 64.8 10.2 73 158-231 689-762 (869)
49 cd04887 ACT_MalLac-Enz ACT_Mal 97.0 0.006 1.3E-07 43.3 8.3 61 162-226 2-63 (74)
50 PRK05092 PII uridylyl-transfer 97.0 0.0047 1E-07 64.8 10.2 74 157-230 730-806 (931)
51 cd04894 ACT_ACR-like_1 ACT dom 96.8 0.009 2E-07 41.9 7.2 66 161-227 2-67 (69)
52 cd04886 ACT_ThrD-II-like C-ter 96.8 0.013 2.9E-07 40.6 8.2 46 163-208 2-52 (73)
53 PRK06027 purU formyltetrahydro 96.5 0.025 5.3E-07 51.6 10.3 91 158-254 5-97 (286)
54 cd04888 ACT_PheB-BS C-terminal 96.5 0.016 3.6E-07 41.1 7.2 64 160-226 1-65 (76)
55 cd04877 ACT_TyrR N-terminal AC 96.3 0.019 4.1E-07 41.2 6.6 45 161-208 2-46 (74)
56 TIGR00655 PurU formyltetrahydr 96.2 0.042 9.2E-07 49.9 10.0 89 161-255 2-93 (280)
57 PRK13010 purU formyltetrahydro 96.0 0.039 8.5E-07 50.4 8.9 92 159-255 9-102 (289)
58 PRK08577 hypothetical protein; 96.0 0.14 3.1E-06 41.2 11.2 67 156-225 53-121 (136)
59 PRK04435 hypothetical protein; 95.9 0.051 1.1E-06 44.7 8.4 68 156-226 66-134 (147)
60 cd04876 ACT_RelA-SpoT ACT dom 95.9 0.066 1.4E-06 35.7 7.6 47 162-208 1-48 (71)
61 COG0788 PurU Formyltetrahydrof 95.8 0.045 9.7E-07 49.2 8.1 97 158-258 6-102 (287)
62 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.5 0.07 1.5E-06 37.4 6.7 48 161-208 2-51 (79)
63 PRK11589 gcvR glycine cleavage 95.3 0.055 1.2E-06 46.4 6.6 68 158-230 7-74 (190)
64 PRK13011 formyltetrahydrofolat 95.2 0.17 3.7E-06 46.2 9.8 73 159-235 7-81 (286)
65 PRK07334 threonine dehydratase 95.1 0.14 3.1E-06 48.6 9.4 67 156-226 323-394 (403)
66 cd04878 ACT_AHAS N-terminal AC 95.0 0.19 4.2E-06 34.4 7.6 47 161-207 2-50 (72)
67 cd04880 ACT_AAAH-PDT-like ACT 94.8 0.3 6.6E-06 34.8 8.5 45 164-208 4-49 (75)
68 cd04909 ACT_PDH-BS C-terminal 94.8 0.25 5.5E-06 34.4 7.8 36 160-195 2-37 (69)
69 KOG4447 Transcription factor T 94.7 0.02 4.3E-07 47.1 2.2 54 56-109 78-133 (173)
70 COG2844 GlnD UTP:GlnB (protein 94.7 0.24 5.1E-06 50.9 10.1 71 159-229 684-756 (867)
71 cd04905 ACT_CM-PDT C-terminal 94.7 0.43 9.2E-06 34.5 9.1 62 162-227 4-66 (80)
72 cd02116 ACT ACT domains are co 94.7 0.21 4.6E-06 31.3 6.8 35 162-196 1-35 (60)
73 cd04883 ACT_AcuB C-terminal AC 94.4 0.43 9.4E-06 33.3 8.3 48 160-207 2-51 (72)
74 cd04874 ACT_Af1403 N-terminal 94.4 0.4 8.6E-06 32.9 8.0 36 161-196 2-37 (72)
75 cd04908 ACT_Bt0572_1 N-termina 94.0 0.54 1.2E-05 32.6 8.1 45 161-207 3-47 (66)
76 cd04903 ACT_LSD C-terminal ACT 93.9 0.37 8E-06 32.9 7.0 33 162-194 2-34 (71)
77 COG3830 ACT domain-containing 93.8 0.14 3.1E-06 38.5 4.9 69 159-230 3-71 (90)
78 cd04931 ACT_PAH ACT domain of 93.8 0.56 1.2E-05 35.3 8.2 63 160-227 15-78 (90)
79 PRK11589 gcvR glycine cleavage 93.3 0.49 1.1E-05 40.6 8.1 71 159-233 95-171 (190)
80 cd04884 ACT_CBS C-terminal ACT 93.1 0.67 1.4E-05 32.7 7.4 34 162-195 2-35 (72)
81 KOG3910 Helix loop helix trans 93.1 0.09 2E-06 50.8 3.5 56 56-111 526-585 (632)
82 cd04904 ACT_AAAH ACT domain of 92.9 0.67 1.5E-05 33.2 7.2 58 164-227 5-63 (74)
83 cd04879 ACT_3PGDH-like ACT_3PG 92.9 0.43 9.3E-06 32.4 6.0 44 162-205 2-47 (71)
84 cd04889 ACT_PDH-BS-like C-term 92.8 0.46 9.9E-06 31.7 5.9 44 163-206 2-46 (56)
85 PRK10872 relA (p)ppGpp synthet 92.1 0.69 1.5E-05 47.5 8.6 64 158-225 665-730 (743)
86 COG4492 PheB ACT domain-contai 91.8 0.98 2.1E-05 36.6 7.3 69 156-227 69-138 (150)
87 cd04882 ACT_Bt0572_2 C-termina 91.6 1.2 2.5E-05 30.2 6.9 35 162-196 2-36 (65)
88 KOG4395 Transcription factor A 91.3 0.63 1.4E-05 41.4 6.4 52 58-109 176-230 (285)
89 PRK00227 glnD PII uridylyl-tra 91.2 1.1 2.3E-05 45.9 8.9 65 164-231 552-616 (693)
90 cd04929 ACT_TPH ACT domain of 90.7 2.1 4.6E-05 30.9 7.7 56 166-227 7-63 (74)
91 PRK11092 bifunctional (p)ppGpp 90.6 1.2 2.5E-05 45.7 8.5 64 158-225 625-689 (702)
92 cd04901 ACT_3PGDH C-terminal A 90.6 0.34 7.5E-06 33.4 3.4 45 162-206 2-46 (69)
93 TIGR00691 spoT_relA (p)ppGpp s 90.2 1.3 2.9E-05 45.2 8.4 64 158-225 609-673 (683)
94 TIGR00119 acolac_sm acetolacta 89.9 1.8 3.9E-05 36.0 7.7 64 161-229 3-68 (157)
95 KOG3559 Transcriptional regula 89.7 0.33 7.2E-06 46.1 3.4 42 62-103 7-52 (598)
96 cd04885 ACT_ThrD-I Tandem C-te 89.2 2.5 5.5E-05 29.5 7.0 59 163-226 2-61 (68)
97 KOG3560 Aryl-hydrocarbon recep 89.1 0.37 7.9E-06 47.3 3.3 38 65-102 34-75 (712)
98 PRK11895 ilvH acetolactate syn 89.0 2.5 5.4E-05 35.3 7.9 64 161-229 4-69 (161)
99 cd04902 ACT_3PGDH-xct C-termin 89.0 1.6 3.5E-05 30.2 5.9 44 163-206 3-48 (73)
100 PRK11899 prephenate dehydratas 88.9 2.9 6.3E-05 38.0 8.9 66 160-229 195-261 (279)
101 KOG3898 Transcription factor N 88.1 0.29 6.4E-06 43.9 1.9 51 57-107 73-126 (254)
102 CHL00100 ilvH acetohydroxyacid 88.1 3.4 7.3E-05 35.0 8.2 66 161-231 4-71 (174)
103 PRK06737 acetolactate synthase 88.1 2.2 4.8E-05 31.1 6.2 63 160-227 3-67 (76)
104 PRK13562 acetolactate synthase 88.1 2.1 4.5E-05 32.0 6.1 66 161-228 4-69 (84)
105 PF13710 ACT_5: ACT domain; PD 87.6 2.2 4.8E-05 29.7 5.8 56 168-228 1-58 (63)
106 KOG3558 Hypoxia-inducible fact 87.1 0.51 1.1E-05 47.5 3.0 43 60-102 50-96 (768)
107 cd04930 ACT_TH ACT domain of t 87.0 4.2 9E-05 32.0 7.7 61 161-227 43-104 (115)
108 PRK11152 ilvM acetolactate syn 86.9 3.6 7.9E-05 30.0 6.7 63 160-228 4-68 (76)
109 PRK06382 threonine dehydratase 86.3 4.4 9.5E-05 38.6 8.9 53 156-208 327-384 (406)
110 TIGR01127 ilvA_1Cterm threonin 85.3 6.3 0.00014 37.0 9.3 67 156-226 302-373 (380)
111 PRK08198 threonine dehydratase 84.9 6.6 0.00014 37.2 9.3 66 156-225 324-394 (404)
112 PF05088 Bac_GDH: Bacterial NA 82.9 8.7 0.00019 42.7 10.2 73 157-231 487-564 (1528)
113 cd04906 ACT_ThrD-I_1 First of 82.7 13 0.00029 27.0 8.4 61 161-226 3-64 (85)
114 COG0077 PheA Prephenate dehydr 82.4 8.5 0.00018 35.0 8.4 68 160-231 195-263 (279)
115 PRK00227 glnD PII uridylyl-tra 81.6 2.4 5.2E-05 43.4 5.1 60 160-229 632-691 (693)
116 COG2716 GcvR Glycine cleavage 79.1 2.7 5.8E-05 35.5 3.8 65 158-227 4-68 (176)
117 PRK08526 threonine dehydratase 79.0 14 0.0003 35.3 9.1 68 155-226 322-394 (403)
118 PRK08178 acetolactate synthase 78.2 12 0.00025 28.7 6.7 52 157-208 6-57 (96)
119 PRK10622 pheA bifunctional cho 77.9 14 0.0003 35.2 8.7 64 165-232 303-367 (386)
120 COG0317 SpoT Guanosine polypho 77.8 9.6 0.00021 39.0 7.9 53 156-208 624-677 (701)
121 PRK11898 prephenate dehydratas 77.2 13 0.00029 33.7 8.1 66 160-229 197-264 (283)
122 KOG3582 Mlx interactors and re 76.3 0.9 1.9E-05 45.8 0.2 60 55-114 650-714 (856)
123 COG2716 GcvR Glycine cleavage 74.4 11 0.00024 31.8 6.2 73 156-228 89-163 (176)
124 cd04898 ACT_ACR-like_4 ACT dom 71.8 12 0.00026 27.4 5.0 49 163-211 4-54 (77)
125 COG3978 Acetolactate synthase 67.7 40 0.00087 24.9 7.1 65 160-230 4-70 (86)
126 cd04922 ACT_AKi-HSDH-ThrA_2 AC 67.2 34 0.00074 22.8 7.7 34 161-194 3-39 (66)
127 cd04892 ACT_AK-like_2 ACT doma 63.9 37 0.0008 21.9 7.8 33 162-194 3-38 (65)
128 PRK00907 hypothetical protein; 63.9 35 0.00076 25.8 6.5 63 160-226 18-84 (92)
129 COG4747 ACT domain-containing 63.7 25 0.00055 28.1 5.8 43 161-203 5-47 (142)
130 PLN02317 arogenate dehydratase 63.3 51 0.0011 31.4 8.9 62 164-229 288-364 (382)
131 cd04868 ACT_AK-like ACT domain 61.0 39 0.00085 21.3 5.8 27 168-194 12-38 (60)
132 cd04871 ACT_PSP_2 ACT domains 58.6 15 0.00032 27.0 3.6 63 162-229 2-74 (84)
133 COG1707 ACT domain-containing 57.0 47 0.001 28.2 6.6 49 160-208 3-51 (218)
134 PRK14639 hypothetical protein; 56.9 50 0.0011 26.8 6.7 71 176-247 3-80 (140)
135 TIGR01270 Trp_5_monoox tryptop 55.8 50 0.0011 32.3 7.5 62 160-227 32-95 (464)
136 TIGR01268 Phe4hydrox_tetr phen 55.4 64 0.0014 31.3 8.2 63 160-227 17-80 (436)
137 PRK14637 hypothetical protein; 55.1 1E+02 0.0023 25.3 8.4 62 168-230 6-67 (151)
138 TIGR02079 THD1 threonine dehyd 51.9 1.1E+02 0.0023 29.2 9.2 67 156-226 322-390 (409)
139 KOG4447 Transcription factor T 51.7 12 0.00027 31.0 2.3 44 63-106 29-74 (173)
140 PRK00092 ribosome maturation p 51.6 71 0.0015 26.1 7.0 55 176-231 13-67 (154)
141 PF13840 ACT_7: ACT domain ; P 51.2 23 0.00049 24.5 3.4 35 157-191 4-42 (65)
142 COG2061 ACT-domain-containing 50.8 99 0.0021 25.8 7.4 50 159-208 5-57 (170)
143 PRK14630 hypothetical protein; 50.7 75 0.0016 25.9 6.9 73 174-247 12-89 (143)
144 cd04916 ACT_AKiii-YclM-BS_2 AC 50.6 71 0.0015 21.1 7.9 34 161-194 3-39 (66)
145 TIGR01124 ilvA_2Cterm threonin 49.8 1E+02 0.0022 30.3 8.9 65 156-226 322-387 (499)
146 PRK10820 DNA-binding transcrip 49.1 23 0.0005 34.9 4.3 37 160-196 1-37 (520)
147 PF02344 Myc-LZ: Myc leucine z 47.8 22 0.00047 21.5 2.4 18 63-80 12-29 (32)
148 PF05088 Bac_GDH: Bacterial NA 47.3 1.3E+02 0.0029 33.9 10.0 74 157-231 15-107 (1528)
149 PRK14647 hypothetical protein; 46.7 1.1E+02 0.0024 25.3 7.4 55 176-231 14-68 (159)
150 PRK12483 threonine dehydratase 46.7 1.3E+02 0.0028 29.9 9.0 52 155-208 341-393 (521)
151 PRK15385 magnesium transport p 45.2 1.6E+02 0.0034 26.0 8.4 39 158-196 141-181 (225)
152 COG3074 Uncharacterized protei 45.1 35 0.00075 24.6 3.5 23 94-116 13-35 (79)
153 cd04919 ACT_AK-Hom3_2 ACT doma 45.0 91 0.002 20.7 8.0 27 168-194 13-39 (66)
154 PRK00341 hypothetical protein; 44.9 1E+02 0.0022 23.2 6.2 62 160-226 18-83 (91)
155 PRK14638 hypothetical protein; 43.8 1.1E+02 0.0024 25.1 6.9 56 176-231 14-69 (150)
156 KOG3582 Mlx interactors and re 43.5 7.4 0.00016 39.6 -0.2 57 57-116 788-849 (856)
157 cd04937 ACT_AKi-DapG-BS_2 ACT 43.0 1E+02 0.0022 20.8 8.0 28 161-188 3-33 (64)
158 PF09383 NIL: NIL domain; Int 43.0 1.2E+02 0.0025 21.3 9.3 50 158-208 3-53 (76)
159 PRK09224 threonine dehydratase 42.0 1.8E+02 0.0039 28.7 9.2 66 156-226 325-391 (504)
160 PRK14634 hypothetical protein; 41.9 1.2E+02 0.0025 25.1 6.8 56 176-231 13-69 (155)
161 cd04921 ACT_AKi-HSDH-ThrA-like 41.6 1.2E+02 0.0026 21.1 6.3 26 168-193 13-38 (80)
162 cd04924 ACT_AK-Arch_2 ACT doma 41.0 1E+02 0.0022 20.2 7.8 34 161-194 3-39 (66)
163 PRK14646 hypothetical protein; 40.9 1.9E+02 0.0041 23.8 7.9 58 173-230 10-68 (155)
164 COG4747 ACT domain-containing 40.6 1.9E+02 0.0041 23.2 7.3 34 162-195 72-107 (142)
165 PRK02047 hypothetical protein; 40.3 1.4E+02 0.0029 22.4 6.4 63 160-226 17-83 (91)
166 PRK14633 hypothetical protein; 40.2 1.7E+02 0.0037 23.9 7.5 54 175-230 9-62 (150)
167 PRK14640 hypothetical protein; 39.5 1.8E+02 0.0038 23.9 7.5 55 175-230 11-65 (152)
168 cd04918 ACT_AK1-AT_2 ACT domai 39.4 1.2E+02 0.0026 20.5 6.4 31 168-198 12-42 (65)
169 cd04923 ACT_AK-LysC-DapG-like_ 39.3 1.1E+02 0.0023 19.9 7.2 25 168-192 12-36 (63)
170 PRK11191 RNase E inhibitor pro 38.2 1.7E+02 0.0037 23.8 7.1 70 163-234 37-107 (138)
171 PRK08818 prephenate dehydrogen 37.7 1.9E+02 0.0042 27.3 8.4 41 167-208 304-344 (370)
172 PRK08639 threonine dehydratase 36.9 2.1E+02 0.0046 27.3 8.7 68 155-226 332-401 (420)
173 cd04912 ACT_AKiii-LysC-EC-like 36.8 1.5E+02 0.0032 20.8 7.7 31 161-191 3-36 (75)
174 cd04913 ACT_AKii-LysC-BS-like_ 36.5 1.3E+02 0.0028 20.0 7.9 25 167-191 10-34 (75)
175 cd04936 ACT_AKii-LysC-BS-like_ 36.5 1.2E+02 0.0026 19.6 7.4 25 168-192 12-36 (63)
176 PRK15422 septal ring assembly 36.4 55 0.0012 24.1 3.5 23 94-116 13-35 (79)
177 PRK14645 hypothetical protein; 35.7 2.4E+02 0.0052 23.3 7.7 59 173-231 12-71 (154)
178 cd04890 ACT_AK-like_1 ACT doma 35.2 1.3E+02 0.0029 19.8 5.9 25 168-192 12-36 (62)
179 PF06005 DUF904: Protein of un 35.0 63 0.0014 23.2 3.6 23 94-116 13-35 (72)
180 PRK14632 hypothetical protein; 34.9 1.7E+02 0.0037 24.5 6.9 53 177-231 15-67 (172)
181 PRK13702 replication protein; 34.5 1.1E+02 0.0024 22.8 4.9 28 58-85 22-51 (85)
182 PRK14636 hypothetical protein; 33.4 2.6E+02 0.0057 23.5 7.8 56 176-231 11-67 (176)
183 cd04907 ACT_ThrD-I_2 Second of 32.3 2E+02 0.0042 20.9 7.5 61 160-226 2-63 (81)
184 PRK14641 hypothetical protein; 32.1 1.9E+02 0.0041 24.4 6.6 49 181-230 20-68 (173)
185 COG0779 Uncharacterized protei 32.0 1.8E+02 0.004 24.0 6.4 51 177-229 15-66 (153)
186 PRK14643 hypothetical protein; 31.8 3E+02 0.0066 22.9 7.9 55 176-230 15-72 (164)
187 cd04933 ACT_AK1-AT_1 ACT domai 31.4 2E+02 0.0044 20.7 7.8 26 167-192 12-37 (78)
188 PF04359 DUF493: Protein of un 30.0 62 0.0013 23.6 3.0 64 158-225 9-76 (85)
189 cd04932 ACT_AKiii-LysC-EC_1 AC 29.9 2E+02 0.0044 20.3 8.5 56 167-230 12-67 (75)
190 PF15392 Joubert: Joubert synd 29.9 1.7E+02 0.0037 27.2 6.3 55 56-110 56-115 (329)
191 cd04891 ACT_AK-LysC-DapG-like_ 29.7 1.5E+02 0.0032 18.7 5.7 27 167-193 9-35 (61)
192 PRK04998 hypothetical protein; 29.3 2.3E+02 0.0049 20.9 6.0 63 160-226 16-80 (88)
193 cd04920 ACT_AKiii-DAPDC_2 ACT 29.1 1.8E+02 0.004 19.6 5.9 23 168-190 12-34 (63)
194 PLN02550 threonine dehydratase 27.8 3.7E+02 0.008 27.3 8.9 65 156-226 414-479 (591)
195 PRK06349 homoserine dehydrogen 26.9 3.3E+02 0.0073 26.0 8.2 34 159-192 348-381 (426)
196 TIGR00103 DNA_YbaB_EbfC DNA-bi 26.5 2.9E+02 0.0063 21.0 8.4 24 94-117 7-30 (102)
197 PF08544 GHMP_kinases_C: GHMP 26.4 2.2E+02 0.0047 19.8 5.4 48 172-229 35-84 (85)
198 PRK02001 hypothetical protein; 26.2 2.4E+02 0.0052 23.3 6.1 64 179-247 14-82 (152)
199 PRK14635 hypothetical protein; 26.1 3.8E+02 0.0082 22.2 7.4 75 173-247 8-91 (162)
200 COG2921 Uncharacterized conser 26.0 2.8E+02 0.006 20.9 5.8 64 159-226 15-82 (90)
201 cd04910 ACT_AK-Ectoine_1 ACT d 25.3 2.6E+02 0.0056 20.0 5.4 34 168-203 13-46 (71)
202 COG3283 TyrR Transcriptional r 25.0 77 0.0017 30.5 3.3 37 161-197 2-38 (511)
203 TIGR00719 sda_beta L-serine de 23.6 4.7E+02 0.01 22.4 8.0 46 161-208 150-197 (208)
204 COG0440 IlvH Acetolactate synt 23.3 2.9E+02 0.0062 23.2 6.1 68 161-231 6-73 (163)
205 PF02576 DUF150: Uncharacteris 23.3 2.3E+02 0.005 22.6 5.5 53 177-230 3-55 (141)
206 PRK11020 hypothetical protein; 22.3 1.4E+02 0.0031 23.5 3.8 49 66-114 5-53 (118)
207 PF07485 DUF1529: Domain of Un 21.9 3.8E+02 0.0082 21.3 6.3 53 171-229 68-121 (123)
208 cd04915 ACT_AK-Ectoine_2 ACT d 21.6 2.7E+02 0.0059 18.9 7.8 27 169-195 14-40 (66)
209 PRK14631 hypothetical protein; 21.5 4.3E+02 0.0093 22.2 6.9 55 176-230 14-85 (174)
210 PRK14623 hypothetical protein; 21.3 3.8E+02 0.0082 20.7 6.0 24 94-117 3-26 (106)
211 PRK10222 PTS system L-ascorbat 21.0 3.1E+02 0.0068 20.0 5.4 57 174-230 5-78 (85)
212 cd04935 ACT_AKiii-DAPDC_1 ACT 20.4 3.2E+02 0.0069 19.3 6.5 26 167-192 12-37 (75)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.41 E-value=3.5e-13 Score=93.76 Aligned_cols=53 Identities=40% Similarity=0.574 Sum_probs=49.7
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQA 108 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~ 108 (260)
.+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999988 89999999999999999999875
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.41 E-value=2.7e-13 Score=93.19 Aligned_cols=49 Identities=45% Similarity=0.692 Sum_probs=46.1
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC-----CccccccHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-----IKTDKASLLAEVVHHVKELR 105 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-----~k~dk~sil~~ai~yi~~L~ 105 (260)
+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999986 78999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.37 E-value=1.2e-12 Score=89.08 Aligned_cols=49 Identities=37% Similarity=0.591 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHhHHHHHhhcCC---CCccccccHHHHHHHHHHHHHHHHH
Q 024930 61 KEAERRRRQRINSHLSTLRTLLPN---TIKTDKASLLAEVVHHVKELRSQAT 109 (260)
Q Consensus 61 ~~~Er~RR~~in~~~~~Lr~lvP~---~~k~dk~sil~~ai~yi~~L~~~~~ 109 (260)
+..||+||++||+.|..|+++||. ..+++|++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5799999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.10 E-value=3.4e-10 Score=106.00 Aligned_cols=56 Identities=30% Similarity=0.566 Sum_probs=50.9
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKELRSQATDV 111 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l 111 (260)
.+..|++.|||||++||++|.+|..|||.+ .+..|.+||..+++||+.||+..++.
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999988 46789999999999999999987743
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.08 E-value=1.1e-10 Score=97.75 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=52.5
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC-------CccccccHHHHHHHHHHHHHHHHHHHHHhh
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-------IKTDKASLLAEVVHHVKELRSQATDVAERD 115 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-------~k~dk~sil~~ai~yi~~L~~~~~~l~~~~ 115 (260)
+..|..+||+||+.||..+..|+.|||.+ .|+.||.||.++|+||.+|.+++.+.+++.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999976 378899999999999999999887766553
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.06 E-value=1.6e-09 Score=79.21 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=62.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC--CcccHHHHHHHHHHHHHh
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG--GNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~--~~~~~~~LkeAL~~vl~~ 230 (260)
-.|+|.|.+|||||.+|..+|..+++.|.+|.|+|.|+++.++|.++-.+|.. .+.....|+++|.+++.+
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999887762 234457888999988875
No 7
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.96 E-value=5.7e-09 Score=76.30 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=60.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCCC--CcccHHHHHHHHHHHHHhh
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGGG--GNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~~--~~~~~~~LkeAL~~vl~~~ 231 (260)
.|+|.|.+|||||.+|.++|..+|+.|..|.|+ |.|+++.++|.+ ..+|.. .......|+++|.++++++
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999 999999999999 444532 2345678999999998754
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.85 E-value=2.9e-08 Score=72.03 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=48.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCC
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGG 211 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~ 211 (260)
..|+|.+.+|||||.+|.++|..+||+|..|.|+|.|+++.++|.+.-.+|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~ 53 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN 53 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC
Confidence 4689999999999999999999999999999999999999999999877664
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.83 E-value=3.6e-08 Score=72.20 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=56.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-eCCEEEEEEEEEEccCC-CCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-VGGRTKTVVVIEWVGGG-GGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-~g~~~~~~~~vk~~~g~-~~~~~~~~LkeAL~~vl~ 229 (260)
+.++|.|.++||+|.+|..+|..+||.|+.|.+.+ .+|+++++|.+.-.++. ..+.....|+++|.++|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999996 89999999999755433 122334567777777765
No 10
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.72 E-value=6.5e-09 Score=92.50 Aligned_cols=54 Identities=31% Similarity=0.508 Sum_probs=47.9
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC--------CccccccHHHHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT--------IKTDKASLLAEVVHHVKELRSQATD 110 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--------~k~dk~sil~~ai~yi~~L~~~~~~ 110 (260)
...|.+.||+||+|||+.|.+|+.|||.. .|++||.||+.||+|++.|+.....
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 45699999999999999999999999953 6789999999999999999875443
No 11
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.72 E-value=1.2e-07 Score=68.66 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=53.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-CCEEEEEEEEEEccCCC--CcccHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-GGRTKTVVVIEWVGGGG--GNEEMAVLQRALKDI 227 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g~~~~~~~~vk~~~g~~--~~~~~~~LkeAL~~v 227 (260)
..|.|.|.++||+|.+|..+|..+||+|+.|.+.|. +|+++++|.+.-.++.. .+.....|+++|.++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 468899999999999999999999999999999877 79999999998655541 122234455555544
No 12
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.60 E-value=5.5e-07 Score=65.45 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=56.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEcc-CCC--CcccHHHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVG-GGG--GNEEMAVLQRALKDIVE 229 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~-g~~--~~~~~~~LkeAL~~vl~ 229 (260)
.|+|.+.++||+|.+|..+|..+|+.|+.|.+.+.|+.+.++|.+.-.+ +.. .......|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999987654 331 22335677777777664
No 13
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=1e-06 Score=63.23 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=56.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE-eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMT-TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs-t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
..|.|.|.++||+|.+|..+|..+||.|+.|++. +.+|.++.+|.+.-.+| ++...|.++|+++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~----~~~~~~~~~~~~~~~ 68 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR----GETAALGHALQKEID 68 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc----cchHHHHHHHHHhhC
Confidence 3577889999999999999999999999999886 55899999999987654 456889999988763
No 14
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.42 E-value=3.5e-07 Score=92.34 Aligned_cols=51 Identities=29% Similarity=0.540 Sum_probs=47.7
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKELRSQ 107 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~ 107 (260)
+.+|+.+|||||++||..|.+|.+|||.+ .|+||.+||.+||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999976 6999999999999999988874
No 15
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.36 E-value=4.1e-06 Score=59.29 Aligned_cols=67 Identities=27% Similarity=0.370 Sum_probs=53.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC-CcccHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG-GNEEMAVLQRALKDI 227 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~-~~~~~~~LkeAL~~v 227 (260)
.|.|.|.+++|+|.+|+.+|.++++.|+++++.+.++.+..+|.+...++.. .......|+++|..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999999999998766652 112234455555544
No 16
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.24 E-value=2.8e-06 Score=74.73 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=48.6
Q ss_pred hhhhhccHHHHHHHHHHHHhHHHHHhhcCCC--Cccc-cccHHHHHHHHHHHHHHHHHHH
Q 024930 55 DACKSHKEAERRRRQRINSHLSTLRTLLPNT--IKTD-KASLLAEVVHHVKELRSQATDV 111 (260)
Q Consensus 55 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~d-k~sil~~ai~yi~~L~~~~~~l 111 (260)
..+..|+..||+||+.|+++|..|+.+||.. .+.. .++||..|+.||+.|+.+....
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 3567799999999999999999999999986 2222 6899999999999999876643
No 17
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.16 E-value=1.9e-06 Score=77.30 Aligned_cols=56 Identities=32% Similarity=0.492 Sum_probs=48.5
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC--CccccccHHHHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT--IKTDKASLLAEVVHHVKELRSQATDV 111 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l 111 (260)
++.--+.-||+|-+.||..|..||+|+|.. .|.+||.||+.+.+||.+|+.+..+|
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 334456679999999999999999999975 89999999999999999999866543
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=2.9e-05 Score=55.96 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=53.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
..|.|.+.+++|+|.+|..+|.++++.|++|.+.+.++.++.+|.+.-.++. ..+ ....++|++.|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~--~~~-~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN--PVD-PKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC--cCC-HHHHHHHHHHhc
Confidence 4677889999999999999999999999999999998998899998765544 222 244456666665
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.08 E-value=2.3e-05 Score=81.37 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=64.8
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC-CcccHHHHHHHHHHHHHh
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG-GNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~-~~~~~~~LkeAL~~vl~~ 230 (260)
.+....|+|.|.+|||||.+|.++|.++||+|..|.|+|.|+++.++|.|+...|.. .......|+++|..++..
T Consensus 805 s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 467789999999999999999999999999999999999999999999998765541 123457888888888864
No 20
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.99 E-value=0.0001 Score=53.62 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=56.5
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
.+.|.+.+.+|||++..|..+|.+.|..|+.++.++.++.+...+.++.. ....+.|+.+|..+..+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHHHC
Confidence 48899999999999999999999999999999999999999999988886 346678888887775543
No 21
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.90 E-value=0.00013 Score=51.06 Aligned_cols=66 Identities=29% Similarity=0.401 Sum_probs=50.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC-CcccHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG-GNEEMAVLQRALKD 226 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~-~~~~~~~LkeAL~~ 226 (260)
.|.|.|.+++|+|.+|+.+|.++++.|.++.+.+.++.....|.+...++.. .+.....|+++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999998888888888887665431 11233345555543
No 22
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.90 E-value=7.5e-05 Score=77.69 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=65.3
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC--CcccHHHHHHHHHHHHHhhcc
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG--GNEEMAVLQRALKDIVENRAS 233 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~--~~~~~~~LkeAL~~vl~~~~~ 233 (260)
.....|.|.+.++||||++|..+|..+||+|+.|.|+|.|+++.++|.|.-.+|.. .......|+++|..+|.....
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 45688999999999999999999999999999999999999999999998766652 123456789999999875543
No 23
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.89 E-value=7e-05 Score=77.58 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=61.3
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC-CcccHHHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG-GNEEMAVLQRALKDIV 228 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~-~~~~~~~LkeAL~~vl 228 (260)
.+....|+|.+.++||||.+|.++|.++|+.|..|.|+|.|+++.++|.|...+|.. .......|+++|..+|
T Consensus 780 s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999999999999999998766651 1122367777777665
No 24
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.82 E-value=0.00013 Score=75.59 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=62.9
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC-CcccHHHHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG-GNEEMAVLQRALKDIVE 229 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~-~~~~~~~LkeAL~~vl~ 229 (260)
......|.|.+.++||||.+|..+|..+|+.|+.|.|+|.|+++.++|.|.-.+|.. .......|+++|..+|.
T Consensus 793 ~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 793 GGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999999999999999998765552 12233788888888874
No 25
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.80 E-value=0.00048 Score=72.13 Aligned_cols=77 Identities=26% Similarity=0.313 Sum_probs=65.3
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC--CcccHHHHHHHHHHHHHhhcc
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG--GNEEMAVLQRALKDIVENRAS 233 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~--~~~~~~~LkeAL~~vl~~~~~ 233 (260)
.....|.|.|.++||+|.+|..+|.++|++|..|.|.|.++++.++|.+...+|.. .......|+++|.++|.....
T Consensus 841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 919 (931)
T PRK05092 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEA 919 (931)
T ss_pred CCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccc
Confidence 45689999999999999999999999999999999999999999999998766652 222457899999999965433
No 26
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.75 E-value=0.00043 Score=50.52 Aligned_cols=65 Identities=28% Similarity=0.373 Sum_probs=54.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
+.|.+.|+++||+...|.+.|.+.|..|+.++....++.+...+.+... ..+...|+++|..+-.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-----~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-----WDAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-----cccHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999888877765 2345677777776544
No 27
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.74 E-value=1.3e-05 Score=81.62 Aligned_cols=59 Identities=24% Similarity=0.441 Sum_probs=53.3
Q ss_pred hhhhhccHHHHHHHHHHHHhHHHHHhhcCCC-CccccccHHHHHHHHHHHHHHHHHHHHH
Q 024930 55 DACKSHKEAERRRRQRINSHLSTLRTLLPNT-IKTDKASLLAEVVHHVKELRSQATDVAE 113 (260)
Q Consensus 55 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~ 113 (260)
..+..|+.+|||-|-.||+++.+|+.+||+. .|..|..+|..||+||++|+...+.++.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~ 334 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL 334 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence 3467899999999999999999999999987 8999999999999999999987776544
No 28
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.70 E-value=0.00042 Score=47.88 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=48.1
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
.|.|.|+++||+|.+|+++|.++++.|..+...+.++.....+.+... .......+.++|+++.
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV----DEEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE----EGHGHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC----CCCCHHHHHHHHHccc
Confidence 578899999999999999999999999999998887732222222222 1345678888887763
No 29
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.68 E-value=0.00019 Score=74.45 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=59.4
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
.....|.|.|.++||||.+|..+|..+|++|+.|.|+|.|+++.++|.|.-.+. ........|+++|.++|.
T Consensus 784 ~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~-~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 784 GQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGL-SDNRLQIQLETELLDALA 855 (856)
T ss_pred CCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCC-CCHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999999999999942221 123345678888877764
No 30
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.61 E-value=0.00012 Score=54.09 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHhhcCCC------CccccccHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 024930 69 QRINSHLSTLRTLLPNT------IKTDKASLLAEVVHHVKELRSQATDVAERDWNSC 119 (260)
Q Consensus 69 ~~in~~~~~Lr~lvP~~------~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~ 119 (260)
+.|++.+..|+.|+|.. .|..-+-+|++|..||+.|+.++..|.+..+...
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999965 3444555899999999999999999988876543
No 31
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.59 E-value=0.00029 Score=72.32 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=55.7
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHH
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRAL 224 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL 224 (260)
+....|.|.|.++||||.+|..+|..+|++|+.|.|.|.|+++.++|.|.-.+|.........|+++|
T Consensus 705 ~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~l~~~L 772 (774)
T PRK03381 705 PDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADARAAVEQAV 772 (774)
T ss_pred CCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchHHHHHHHHh
Confidence 34689999999999999999999999999999999999999999999998776652211134444444
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.52 E-value=0.00056 Score=70.96 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=61.7
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCC-CcccHHHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGG-GNEEMAVLQRALKDIV 228 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~-~~~~~~~LkeAL~~vl 228 (260)
......|+|.|.++||+|.+|.++|..+|++|.+|.++|.++++.++|.+....|.. .......|+++|..++
T Consensus 776 s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999999999999999998766651 1234567777777665
No 33
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.48 E-value=0.0006 Score=70.74 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=63.2
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE-eeCCEEEEEEEEEEccCCCC--cccHHHHHHHHHHHHHhh
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT-TVGGRTKTVVVIEWVGGGGG--NEEMAVLQRALKDIVENR 231 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs-t~g~~~~~~~~vk~~~g~~~--~~~~~~LkeAL~~vl~~~ 231 (260)
.....|.|.+.++||+|.+|..+|..+||+|+.|.|. +.+|.++++|.|...+|... ......|+++|..+|...
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999999998 88999999999998766521 223567888999998753
No 34
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.00066 Score=50.59 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=59.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
+.|.+.|+++||++..|.+.|..+|+.|+..+..+.++.+...+.+.... ...+...|+++|..+-.+....+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~---~~~~~~~L~~~l~~l~~~~~l~~ 74 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE---SNLDFAELQEELEELGKELGVKI 74 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC---CCCCHHHHHHHHHHHHHHcCCEE
Confidence 57889999999999999999999999999999888888888777777652 12457888888888766544433
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.47 E-value=0.00066 Score=69.72 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=62.1
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
..+.|.|.|.++||+|.+|..+|..+|+.|+.|.+.+.+|.++.+|.|.-.+|. ....+.|+++|.+++..
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~--~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS--PPDAALLRQDLRRALDG 668 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC--cchHHHHHHHHHHHHcC
Confidence 557899999999999999999999999999999999999999999999866554 23357888999988875
No 36
>PRK00194 hypothetical protein; Validated
Probab=97.44 E-value=0.00088 Score=49.95 Aligned_cols=74 Identities=11% Similarity=0.206 Sum_probs=59.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
.+.|.+.|.++||++.+|.+.|.+.|+.|+..+..+.++.+...+.+..... ..+...|++.|..+-......+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~l~~l~~~~~~~~ 76 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES---KKDFAELKEELEELGKELGVKI 76 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC---CCCHHHHHHHHHHHHHHcCCEE
Confidence 4789999999999999999999999999999998888888877777776521 2456788888888765554443
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.43 E-value=0.00092 Score=48.67 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=50.1
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
...+.|+|.+.+++|+|.+|+.+|.+.++.|.+.++... ++.+...|.+++.+ ......|-++|+
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~ 70 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR 70 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence 456899999999999999999999999999999999884 78999999999972 234444444443
No 38
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.43 E-value=0.00014 Score=63.96 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=51.2
Q ss_pred hhhhhccHHHHHHHHHHHHhHHHHHhhcCC----CCccccccHHHHHHHHHHHHHHHHHHHHH
Q 024930 55 DACKSHKEAERRRRQRINSHLSTLRTLLPN----TIKTDKASLLAEVVHHVKELRSQATDVAE 113 (260)
Q Consensus 55 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~----~~k~dk~sil~~ai~yi~~L~~~~~~l~~ 113 (260)
..+..++..||+|=+.+|..|..||.+||. .+|..|..+|.-||.||++|++-++.-..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 345668888999999999999999999995 47889999999999999999997776543
No 39
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0029 Score=45.42 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=49.4
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe--eCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTT--VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst--~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
|.+.|.++||++.+|.+.|.++|+.|+..+..+ .++.+...+.+.+..+ ..+...|+++|..+-.+.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~l~~~l~~l~~~l 70 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF---DLSREALEAAFAPVAAEF 70 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999998875 3344333333333311 246788898888876543
No 40
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.39 E-value=0.00094 Score=69.33 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=62.7
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-eCCEEEEEEEEEEccCCCC-cccHHHHHHHHHHHHHhhc
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-VGGRTKTVVVIEWVGGGGG-NEEMAVLQRALKDIVENRA 232 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-~g~~~~~~~~vk~~~g~~~-~~~~~~LkeAL~~vl~~~~ 232 (260)
.....|.|.|.++||||++|..+|..+||.|+.|.|.| .+|.++++|.|.-.+|... ......|+++|..+|....
T Consensus 675 ~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~ 752 (854)
T PRK01759 675 RGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK 752 (854)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999999999876 8999999999987766521 2234568888888887543
No 41
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.37 E-value=0.0023 Score=46.40 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=53.3
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC------CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG------GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g------~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
|.+.|.++||++.+|.+.|.++|+.|...+..+.+ +.+...+.+...+ ..+...|+++|..+-.+-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~----~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA----GTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC----CCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999998887 6666666666652 245678888888766543
No 42
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.002 Score=46.57 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=54.7
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
|.+.+.+|||++.+|.++|.++|++|...+.++.++.+...+.+....+ .+.+.|+++|..+...
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~----~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS----ADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC----CCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998888887777633 3567888888776554
No 43
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.34 E-value=0.0012 Score=68.84 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=61.6
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-CCEEEEEEEEEEccCCCC-cccHHHHHHHHHHHHHhh
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-GGRTKTVVVIEWVGGGGG-NEEMAVLQRALKDIVENR 231 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g~~~~~~~~vk~~~g~~~-~~~~~~LkeAL~~vl~~~ 231 (260)
.....|.|.|.+++|+|..|..+|..+||+|+.|.|.|. +|.++++|.|.-.+|... ......|+++|.++|...
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999999999998766 569999999987766522 123456888888888754
No 44
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.001 Score=67.41 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=58.2
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
.....+++.+.+|||||..|..+|..++|+|++|.|+|+|.++.++|++....+. .. -.++++.|.+.+.
T Consensus 789 ~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~--~l-~~~~~q~l~~~ll 858 (867)
T COG2844 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ--AL-NAELRQSLLQRLL 858 (867)
T ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccc--cC-CHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999987665 22 2445555555443
No 45
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.18 E-value=0.001 Score=58.61 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=49.1
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhc-CCC-CccccccHHHHHHHHHHHHHHHHHHHHHhh
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLL-PNT-IKTDKASLLAEVVHHVKELRSQATDVAERD 115 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lv-P~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~~~ 115 (260)
+++.-.+.||+|=.|+|+.|..|..-. +|- ..+-|..||..||+||..||.-++++.+..
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345567889999999999999997543 433 678999999999999999999888875543
No 46
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.17 E-value=0.002 Score=67.27 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=60.9
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEE-EeeCCEEEEEEEEEEccCCCCc---ccHHHHHHHHHHHHHhh
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM-TTVGGRTKTVVVIEWVGGGGGN---EEMAVLQRALKDIVENR 231 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~v-st~g~~~~~~~~vk~~~g~~~~---~~~~~LkeAL~~vl~~~ 231 (260)
....|.|.|.++||+|.+|..+|..+||.|+.|.| ++.+|.++++|.|.-.+|.... .-.+.|+++|.++|...
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999997 6678999999999877665211 23456888888888643
No 47
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.15 E-value=0.0019 Score=67.03 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=60.5
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEE-EeeCCEEEEEEEEEEccCC-CCcccHHHHHHHHHHHHHhh
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM-TTVGGRTKTVVVIEWVGGG-GGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~v-st~g~~~~~~~~vk~~~g~-~~~~~~~~LkeAL~~vl~~~ 231 (260)
....|.|.|.++||+|++|..+|..+||.|+.|.| ++.+|.++++|.|.-.+|. ....-.+.|+++|.++|...
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence 56788999999999999999999999999999998 5679999999999876554 12223566788888887653
No 48
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.01 E-value=0.004 Score=64.84 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=61.4
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-eCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
..+.|.|.|.+++|+|++|..+|..+||.|+.|.|.+ .+|.++++|.|.-.++.. ......|+++|.++|...
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~-~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA-DGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC-hHHHHHHHHHHHHHHcCC
Confidence 5678899999999999999999999999999998875 699999999998765542 334566888888888754
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.006 Score=43.32 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=47.0
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-CCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-GGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+.|.+.++||+|.+|+.+|.+.|..|...++... ++.....|.+++.+ ......|.++|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~----~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS----EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC----HHHHHHHHHHHhc
Confidence 6788899999999999999999999999988776 47777777787763 2344455555443
No 50
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.96 E-value=0.0047 Score=64.83 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=60.9
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-eCCEEEEEEEEEEccCCC--CcccHHHHHHHHHHHHHh
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-VGGRTKTVVVIEWVGGGG--GNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-~g~~~~~~~~vk~~~g~~--~~~~~~~LkeAL~~vl~~ 230 (260)
.....|.|.|.+++|+|.+|..+|..+|++|+.|.|.+ .+|.++++|.|...+|.. .......|+++|..++..
T Consensus 730 ~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 730 RGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 35688999999999999999999999999999999876 699999999998765541 223456788888888754
No 51
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.009 Score=41.94 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=52.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
.|.|.|+++.||=-+|.+.+-+.||.|+.+.+++.|.--+.+|-+.-...+ ....=+.|+++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-IKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-CcccHHHHHHHHHhc
Confidence 478999999999999999999999999999999999876666666544222 234557788877654
No 52
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.013 Score=40.56 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred EEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-----CCEEEEEEEEEEc
Q 024930 163 TLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-----GGRTKTVVVIEWV 208 (260)
Q Consensus 163 ~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-----g~~~~~~~~vk~~ 208 (260)
.|.++++||.|.+|+++|.+.++.|.+.+.... .+.....|.+++.
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 467889999999999999999999998887654 3555555666664
No 53
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.51 E-value=0.025 Score=51.59 Aligned_cols=91 Identities=25% Similarity=0.237 Sum_probs=65.1
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe--eCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT--VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst--~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
..+.|.+.|.+|||+...|.++|.++|+.|+..+.++ .+|.+.-.+.+.+... ..+.+.|+++|..+-....-..
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~---~~~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL---IFNLETLRADFAALAEEFEMDW 81 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHHHHHHhCCEE
Confidence 3578999999999999999999999999999999999 8886555555555211 2457888888887776655543
Q ss_pred CCCCCCCCCccceeccccc
Q 024930 236 GLGRIGSGIKRARVGGLVD 254 (260)
Q Consensus 236 ~~~~~~~~~kr~r~~~~~~ 254 (260)
.. ....++-|+-.+.|
T Consensus 82 ~l---~~~~~~~ri~vl~S 97 (286)
T PRK06027 82 RL---LDSAERKRVVILVS 97 (286)
T ss_pred EE---cccccCcEEEEEEc
Confidence 22 12334445544443
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.016 Score=41.12 Aligned_cols=64 Identities=22% Similarity=0.354 Sum_probs=46.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-CCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-GGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+.+.+.+.+++|+|.+|+++|.+.++.|...+.... ++.....|.+++.+. +.....|-++|++
T Consensus 1 ~~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~~ 65 (76)
T cd04888 1 VTLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELRE 65 (76)
T ss_pred CEEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHhc
Confidence 357788999999999999999999999999987553 466666676766521 1144555555554
No 55
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.28 E-value=0.019 Score=41.20 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=36.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
.++|.|.+++|+|.+|+.+|.+.+..+...++.+. +. ..|.+++.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec
Confidence 57889999999999999999999999999998765 44 33445544
No 56
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.20 E-value=0.042 Score=49.92 Aligned_cols=89 Identities=25% Similarity=0.212 Sum_probs=62.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHHH-HHHhhccCCCC
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALKD-IVENRASGYGL 237 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~-vl~~~~~~~~~ 237 (260)
.|.+.|.+++|+...|...|-+.|+.|+.++.+.. ++.++-.+.+..... ..+...|+++|.. +-...+..|-.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~---~~~~~~l~~~l~~~~~~~~~l~i~l 78 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF---RLEESSLLAAFKSALAEKFEMTWEL 78 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 47899999999999999999999999999998875 476665555555421 3567899999998 55554545432
Q ss_pred CCCCCCCccceecccccc
Q 024930 238 GRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 238 ~~~~~~~kr~r~~~~~~~ 255 (260)
....++.|+.-+.|+
T Consensus 79 ---~~~~~~~ki~vl~Sg 93 (280)
T TIGR00655 79 ---ILADKLKRVAILVSK 93 (280)
T ss_pred ---ecCCCCcEEEEEEcC
Confidence 122344555555443
No 57
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.01 E-value=0.039 Score=50.36 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=62.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCCC
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGYG 236 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~~ 236 (260)
.+.|.|.|.+++|+...|.+.|-+.|+.|+.++-. +..+.++-.+ ++........+...|+++|..+-..-+.+|.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i--~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~ 86 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRV--SFHAQSAEAASVDTFRQEFQPVAEKFDMQWA 86 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEE--EEEcCCCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 46899999999999999999999999999999885 3444444333 3331111235678999999998777666653
Q ss_pred CCCCCCCCccceecccccc
Q 024930 237 LGRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 237 ~~~~~~~~kr~r~~~~~~~ 255 (260)
.- ...++.|+--+.|+
T Consensus 87 i~---~~~~~~kiavl~Sg 102 (289)
T PRK13010 87 IH---PDGQRPKVVIMVSK 102 (289)
T ss_pred Ee---cCCCCeEEEEEEeC
Confidence 31 12234455544443
No 58
>PRK08577 hypothetical protein; Provisional
Probab=95.99 E-value=0.14 Score=41.25 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=49.9
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
..+.+.|.|.+.+++|+|.+|+++|.+.+..+.+.+..+. ++.....|.+.+.+. ......+.+.|+
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~---~~~l~~l~~~L~ 121 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS---DIDLEELEEELK 121 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc---hhhHHHHHHHHH
Confidence 3458999999999999999999999999999999887665 355556677777632 123445555544
No 59
>PRK04435 hypothetical protein; Provisional
Probab=95.93 E-value=0.051 Score=44.65 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=51.7
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-eCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.++.+.+.+.+.+++|+|.+|+++|.+.++.|+..+... .+|.....|.+++.+. ......|-++|+.
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~~ 134 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLRN 134 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHHc
Confidence 467899999999999999999999999999999998654 3676667777777522 2244555555543
No 60
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.87 E-value=0.066 Score=35.69 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=37.1
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEc
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWV 208 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~ 208 (260)
+++.|.+++|.+.+|++.|...++.+....+...+ +.....|.++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 35678899999999999999999999999887665 544455555554
No 61
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.045 Score=49.16 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=66.7
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCCCC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGYGL 237 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~~~ 237 (260)
....+.+.|.+++|+...|-..|-+.|..|+.++-.+....-+..+.+++..+. ...+.+.|++++..+.+..+..|..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~-~~~~~~~l~~~f~~~a~~f~m~~~~ 84 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEG-GPLDREALRAAFAPLAEEFGMDWRL 84 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCC-CcccHHHHHHHHHHHHHhhCceeEE
Confidence 357889999999999999999999999999999766332222233334444222 2255677777777766666655532
Q ss_pred CCCCCCCccceeccccccccc
Q 024930 238 GRIGSGIKRARVGGLVDECDH 258 (260)
Q Consensus 238 ~~~~~~~kr~r~~~~~~~~~~ 258 (260)
....+|.|+.-.++--||
T Consensus 85 ---~~~~~~~ri~i~VSK~~H 102 (287)
T COG0788 85 ---HDAAQRKRIAILVSKEDH 102 (287)
T ss_pred ---eccccCceEEEEEechHH
Confidence 467778888777665443
No 62
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.49 E-value=0.07 Score=37.41 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=37.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEEEEc
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVIEWV 208 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~vk~~ 208 (260)
+|.|.+.+++|+|.+|+.+|.+.+..+...+..... +.....+.+...
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC
Confidence 678889999999999999999999999998876542 555445555443
No 63
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.30 E-value=0.055 Score=46.44 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=56.3
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
..+.|.+.+.+|||+...|.++|.++|..|+.++.+..+|.+--++.+... ......|+.+|..+-..
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-----~~~~~~le~~L~~l~~~ 74 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-----WNAITLIESTLPLKGAE 74 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-----hhHHHHHHHHHHhhhhh
Confidence 458899999999999999999999999999999999999987777766332 34567788877776543
No 64
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=95.19 E-value=0.17 Score=46.16 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=53.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
.+.|.|.|.++||+..+|.+.|.+++++|...+..+. ++.+. +.+++.-- ...+...|+++|..+-..-...+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~--m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFF--MRVEFHSE--EGLDEDALRAGFAPIAARFGMQW 81 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEE--EEEEEecC--CCCCHHHHHHHHHHHHHHhCcEE
Confidence 5789999999999999999999999999999988643 33333 34444311 13457889999888777655443
No 65
>PRK07334 threonine dehydratase; Provisional
Probab=95.09 E-value=0.14 Score=48.61 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-----CCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-----GGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-----g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.+..+.|.|.+.+++|+|.+|+.+|.+.++.|.+.++.+. ++.....|.+++.+ ......|..+|++
T Consensus 323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~Lr~ 394 (403)
T PRK07334 323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAALRA 394 (403)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999998764 56766777787762 3344555555554
No 66
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.97 E-value=0.19 Score=34.40 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=36.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEE
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEW 207 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~ 207 (260)
.+.+.+.+++|+|.+|+..|.+.++.+...+.... ++.....|.+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 35667889999999999999999999999987654 455555555554
No 67
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.85 E-value=0.3 Score=34.76 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=37.3
Q ss_pred EEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCC-EEEEEEEEEEc
Q 024930 164 LCCEDRPGLNRELTRAISLVRARAVRAEMTTVGG-RTKTVVVIEWV 208 (260)
Q Consensus 164 I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~-~~~~~~~vk~~ 208 (260)
+...++||.|.+|++.|...|+.+++.......+ .-.+.|.+++.
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 4456899999999999999999999998777655 55577778876
No 68
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.78 E-value=0.25 Score=34.36 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=31.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV 195 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~ 195 (260)
..+.+.++++||.|.+|++.|.+.++.|........
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 356778899999999999999999999998866554
No 69
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.74 E-value=0.02 Score=47.05 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=47.6
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC--CccccccHHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT--IKTDKASLLAEVVHHVKELRSQAT 109 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~~~~ 109 (260)
.+..|++.||+|=+.+|+.|..||.++|.. .|.+|.--|+-|..||-+|-+-+.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 456799999999999999999999999965 788999999999999999876443
No 70
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.24 Score=50.87 Aligned_cols=71 Identities=21% Similarity=0.152 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEE-EeeCCEEEEEEEEEEccCCCCc-ccHHHHHHHHHHHHH
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEM-TTVGGRTKTVVVIEWVGGGGGN-EEMAVLQRALKDIVE 229 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~v-st~g~~~~~~~~vk~~~g~~~~-~~~~~LkeAL~~vl~ 229 (260)
...|.|.|.++|.+|..|..++...|++|+.|.| ++.+|+.+++|.|...+|...+ .-...+...|.+++.
T Consensus 684 ~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~ 756 (867)
T COG2844 684 GTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALL 756 (867)
T ss_pred ceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHh
Confidence 3677789999999999999999999999999976 6779999999999877665222 112345566666665
No 71
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.71 E-value=0.43 Score=34.52 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=44.4
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
+.+...+++|.|.+|++.|.++++.+++....... +...+.|.++.. + ..+...++++|..+
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~---~~~~~~~~~~l~~l 66 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-G---HIEDPNVAEALEEL 66 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-C---CCCCHHHHHHHHHH
Confidence 44455689999999999999999999999776664 355577778776 2 12345566665433
No 72
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.68 E-value=0.21 Score=31.30 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=30.7
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG 196 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g 196 (260)
|.+.|.+.+|.+.+|+.+|...++.+.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 45778899999999999999999999999876654
No 73
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.40 E-value=0.43 Score=33.29 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=35.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEE
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEW 207 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~ 207 (260)
..+.+..+++||.|.+|++.|.+.++.|.+...... ++....+|.+..
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 356778899999999999999999999998865433 344444444443
No 74
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.36 E-value=0.4 Score=32.89 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG 196 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g 196 (260)
.+.+.+.+++|.|.+|+..|.+.++.|.+.+....+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 466788999999999999999999999988876653
No 75
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.04 E-value=0.54 Score=32.62 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=36.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEE
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEW 207 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~ 207 (260)
.+.|..+++||.|.+|+++|.+.|+.|.+.-+...++. .++.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 56677889999999999999999999999877666563 5555555
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.85 E-value=0.37 Score=32.88 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=29.6
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
+.+.+.+++|.|.+|+..|.+.++.|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 467788999999999999999999999887765
No 77
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=93.81 E-value=0.14 Score=38.54 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
.+.|.|...+|+|+...|..+|.++++.|+..+=+...|++--.+.+...+. ..+...+++.|.....+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~---~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE---VVDFAALRDELAAEGKK 71 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH---hccHHHHHHHHHHHHHh
Confidence 3788999999999999999999999999999998999998877777766532 35667788777776654
No 78
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.79 E-value=0.56 Score=35.32 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=46.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE-EEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTK-TVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~-~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
..+-+...++||.|.+++..|...|+.+.+...-...+..+ +.|.+.+. |. ....++++|..+
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~----~~~~~~~~l~~L 78 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK----SAPALDPIIKSL 78 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC----CCHHHHHHHHHH
Confidence 45555667899999999999999999999998887754444 78888886 32 124555555443
No 79
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.29 E-value=0.49 Score=40.59 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=53.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCC------EEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhc
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGG------RTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRA 232 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~------~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~ 232 (260)
.+.|.+...++||++.+|.++|.+.|+.|..-+..+.+. .+...+.+.+..+ ...+.|+++|...-+.-.
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~----~~~~~L~~~l~~l~~eL~ 170 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS----QDAANIEQAFKALCTELN 170 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC----CCHHHHHHHHHHHHHHhC
Confidence 378899999999999999999999999999988776653 3444444555432 346788888877766544
Q ss_pred c
Q 024930 233 S 233 (260)
Q Consensus 233 ~ 233 (260)
-
T Consensus 171 v 171 (190)
T PRK11589 171 A 171 (190)
T ss_pred c
Confidence 3
No 80
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.14 E-value=0.67 Score=32.66 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.2
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV 195 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~ 195 (260)
+.+.-+++||.|.+|++.|.+.|+.|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 3456679999999999999999999999976654
No 81
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.07 E-value=0.09 Score=50.78 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=45.4
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKELRSQATDV 111 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l 111 (260)
++...+..||-|=..||+.|.+|..+.-.- ....|.-||..||.-|-.|++||.+-
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 456677888888778999999999886432 33458889999999999999999863
No 82
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.90 E-value=0.67 Score=33.21 Aligned_cols=58 Identities=5% Similarity=0.039 Sum_probs=43.7
Q ss_pred EEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 164 LCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 164 I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
+...++||.|.++++.|...|+.+.+...-...+. .-+.|.+++. |. ...++++|..+
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~-~~-----~~~~~~~l~~L 63 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE-VD-----RGDLDQLISSL 63 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE-cC-----hHHHHHHHHHH
Confidence 34467899999999999999999999988777654 4488888887 31 23466666554
No 83
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.89 E-value=0.43 Score=32.40 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=36.0
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEE
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVI 205 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~v 205 (260)
+.+.+.+++|.+.+|+++|.+.++.|.+..+...+ +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788899999999999999999999999887654 555555544
No 84
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.80 E-value=0.46 Score=31.70 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=35.1
Q ss_pred EEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEE
Q 024930 163 TLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIE 206 (260)
Q Consensus 163 ~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk 206 (260)
.+...++||.|.+++++|.+.++.|....+...+ +.....|.+.
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 4677899999999999999999999888776655 6655555543
No 85
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.10 E-value=0.69 Score=47.51 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=50.6
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
..+.|.|.+.+++|+|.+|+.+|.+.++.|.++++.+. ++.+...|.+++.+ ......|-.+|+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 46789999999999999999999999999999998765 47777778888862 234444544444
No 86
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=91.76 E-value=0.98 Score=36.57 Aligned_cols=69 Identities=14% Similarity=0.308 Sum_probs=56.4
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeE-EEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAE-MTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~-vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
.+..+.+.+.-++|.|.|+++++++...++.|+..+ ....+|+.-.++.+... + -+.+++.|-++|+.+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-s--m~~~V~~ii~kl~k~ 138 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-S--MEKDVDKIIEKLRKV 138 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-h--hhhhHHHHHHHHhcc
Confidence 356688889999999999999999999999999995 45889998888888776 2 245677777777654
No 87
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.60 E-value=1.2 Score=30.17 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=28.6
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG 196 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g 196 (260)
+.+.-+++||.|.++++.|.+.++.|.+.......
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 44556799999999999999999999888664443
No 88
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=91.35 E-value=0.63 Score=41.45 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=44.9
Q ss_pred hhccHHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHHHH
Q 024930 58 KSHKEAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQAT 109 (260)
Q Consensus 58 ~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~ 109 (260)
..-+..||+|-..+|..|+.||..||.. .|.+|-..|++|-.||--|-..+.
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4467789999999999999999999975 788899999999999998776553
No 89
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=91.23 E-value=1.1 Score=45.85 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=56.6
Q ss_pred EEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 164 LCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 164 I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
+.|.+++|+|++++.+|.-.++.|.+|++.+ +|.....|.|...-|. ..++..+.++++.++...
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~ 616 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQ--DFDPQEFLQAYKSGVYSE 616 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCC--CCChHHHHHHHHHhhcCC
Confidence 3459999999999999999999999999999 8888899999887564 667899999999888743
No 90
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.70 E-value=2.1 Score=30.87 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=42.6
Q ss_pred ccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 166 CEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 166 c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
-.++||.|.+++..|+..++.+.+...-...+. .-+.|.+.+. |. ...++++|.++
T Consensus 7 l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e-~~-----~~~i~~~l~~l 63 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE-CD-----QRRLDELVQLL 63 (74)
T ss_pred cCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC-----HHHHHHHHHHH
Confidence 367899999999999999999999988776443 4488888886 32 13666666544
No 91
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=90.63 E-value=1.2 Score=45.73 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=49.8
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
..+.|.|.+.+++|+|.+|+.+|.+.++.|.++++.+.+ +.+...|.+++.+ ......|-.+|+
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~----~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD----RVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 467899999999999999999999999999999987765 5656677788862 234444444444
No 92
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=90.59 E-value=0.34 Score=33.44 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=34.1
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEE
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIE 206 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk 206 (260)
+-+.+.+++|+|.+|+.+|.+.+..+...+....++.....|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 345778999999999999999999998876655555555544443
No 93
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.15 E-value=1.3 Score=45.18 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=50.1
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-CCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-GGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
..+.|.|.+.+++|+|.+|+.+|.+.+..|.+.++... ++.+...|.+++.+ ......|-.+|+
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~----~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN----YKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 56789999999999999999999999999999999877 47666677788862 233444444444
No 94
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=89.93 E-value=1.8 Score=36.03 Aligned_cols=64 Identities=9% Similarity=0.177 Sum_probs=46.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
.+.|.-+++||.|.+|...|...|+.|.+..+...+ +....+|++... +.....|...|.++++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d-----~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD-----DKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC-----HHHHHHHHHHHhcCcc
Confidence 467778899999999999999999999999888765 444444544331 3345666666666554
No 95
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.66 E-value=0.33 Score=46.06 Aligned_cols=42 Identities=33% Similarity=0.411 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHH
Q 024930 62 EAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKE 103 (260)
Q Consensus 62 ~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~ 103 (260)
-+-|.||++-|.-|.+|..++|-. +..||++|+.-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 356889999999999999999964 679999999999999984
No 96
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.17 E-value=2.5 Score=29.46 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=39.3
Q ss_pred EEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 163 TLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 163 ~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.|.=+++||-|.++++.|.. +..|+..+....+ +.....+.+++.+ ......|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 34557999999999999999 9999988765543 2333334456652 2345566666543
No 97
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.07 E-value=0.37 Score=47.30 Aligned_cols=38 Identities=39% Similarity=0.562 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHH
Q 024930 65 RRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVK 102 (260)
Q Consensus 65 r~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~ 102 (260)
++-|+|+|.-++.|.+|+|-. +|.||.|||.-+|.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456999999999999999954 89999999999999986
No 98
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=88.98 E-value=2.5 Score=35.34 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=46.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
.+.+.-+++||.|.+|...|...|+.|.+..+.... +....+|++... +...+.|...|.++++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~-----~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD-----EQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC-----HHHHHHHHHHHhcccc
Confidence 567778899999999999999999999999887664 444455544332 3345556655655544
No 99
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=88.96 E-value=1.6 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=34.0
Q ss_pred EEEccCCCChHHHHHHHHHhcCCeEEEeEEEe--eCCEEEEEEEEE
Q 024930 163 TLCCEDRPGLNRELTRAISLVRARAVRAEMTT--VGGRTKTVVVIE 206 (260)
Q Consensus 163 ~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst--~g~~~~~~~~vk 206 (260)
-+...+++|.+.+|.+.|.+.|+.|.+..+.. .++....+|.+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 35678999999999999999999998886654 356665555443
No 100
>PRK11899 prephenate dehydratase; Provisional
Probab=88.94 E-value=2.9 Score=38.02 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=50.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
..+-+...++||.|.+++.+|...|+.+.+...-...+. .-+.|.+.+. |. ..-..+++||.++-.
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e-g~---~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE-GH---PEDRNVALALEELRF 261 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE-CC---CCCHHHHHHHHHHHH
Confidence 334444478999999999999999999999999887555 4588999997 32 223567788877754
No 101
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=88.14 E-value=0.29 Score=43.86 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=43.5
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQ 107 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~ 107 (260)
+.+=+..||+|--.+|+.|+.||.++|.. .|+.|...|.-|-+||..|++-
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 44556779999999999999999999953 7889999999999999887753
No 102
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=88.10 E-value=3.4 Score=35.01 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=48.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe--eCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTT--VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst--~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
.+.+.-+++||+|.+|...|...|+.|.+.++.. ..+....++. +. +. ....+.|...|.++++-.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~-~~--~~~ieqL~kQL~KLidVl 71 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VP-GD--DRTIEQLTKQLYKLVNIL 71 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EE-CC--HHHHHHHHHHHHHHhHhh
Confidence 5777888999999999999999999999998876 4454444444 33 21 223678888888877643
No 103
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=88.09 E-value=2.2 Score=31.15 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=42.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
..+.+.-+++||+|.+|+.+|..-|..|-+-++.... +....++.+ . |. +...+.|...|.++
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~--~-~~--~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA--V-CT--ENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE--E-CC--HHHHHHHHHHHhCC
Confidence 3577788899999999999999999999988887655 444444443 2 22 33344454444443
No 104
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=88.08 E-value=2.1 Score=31.98 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=44.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
.|++.-+++||.|.+|...|...|..|-+.++....+.-+.-+.+.+..|. +...+.|...|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d--~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD--DTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC--HHHHHHHHHHHhCCc
Confidence 567778899999999999999999999888887665444444444343122 333445555554443
No 105
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=87.63 E-value=2.2 Score=29.72 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEe--eCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTT--VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst--~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
++||.|.+|+..+..-|..|-+-++.. .++....++.+.-. +...+.|...|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-----chhHHHHHHHHhccC
Confidence 478999999999999999999999988 55665555544332 344566666655443
No 106
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.09 E-value=0.51 Score=47.50 Aligned_cols=43 Identities=30% Similarity=0.464 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHH
Q 024930 60 HKEAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVK 102 (260)
Q Consensus 60 h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~ 102 (260)
-..+-|-||.|-|+-|.+|..+||-- +..|||+|+.-||-|++
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 44567899999999999999999943 78899999999999997
No 107
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.03 E-value=4.2 Score=32.00 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=44.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEE-EEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRT-KTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~-~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
.+-+...++||.|.++|..|...|+.+.+...-+..+.. -+.|.+.+. |. . ..++.+|..+
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie-g~--~---~~~~~aL~~L 104 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE-VH--R---SDLLQLISSL 104 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE-eC--H---HHHHHHHHHH
Confidence 344444789999999999999999999999888775444 478888886 32 1 2366665444
No 108
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=86.87 E-value=3.6 Score=29.98 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=45.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
-.+.+.-+++||.|.+|+..+..-|..|-+.++... ++....++.+ . + +...+.|...|.+++
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~-~---~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A-S---ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C-C---CchHHHHHHHHhcCc
Confidence 356777789999999999999999999999988874 4555555555 2 2 344566666665543
No 109
>PRK06382 threonine dehydratase; Provisional
Probab=86.27 E-value=4.4 Score=38.60 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=42.0
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE-----eeCCEEEEEEEEEEc
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT-----TVGGRTKTVVVIEWV 208 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs-----t~g~~~~~~~~vk~~ 208 (260)
.+..+++.|.-+++||.|.+|++.|.+.+..|++.... ...+....+|.++..
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 56789999999999999999999999999999988654 223455555656654
No 110
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.29 E-value=6.3 Score=36.98 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=48.6
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-----eCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-----VGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-----~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.+..+.+.|.-+++||.|.++++.|.+.+..|++..... ..+.....+.+++.+ ......|.++|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~----~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG----KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 567789999999999999999999999999999886552 125555666666651 2344455555544
No 111
>PRK08198 threonine dehydratase; Provisional
Probab=84.88 E-value=6.6 Score=37.21 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=47.9
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-----CCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-----GGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-----g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
.+..+.+.|.=+++||.|.++++.|.+.|..|+..+..-. .+.....+.+++. + ....+.|.++|+
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~-~---~~~~~~l~~~L~ 394 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR-G---PEHIEEILDALR 394 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC-C---HHHHHHHHHHHH
Confidence 5677899999999999999999999999999998876532 3555555666663 1 223444554444
No 112
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=82.93 E-value=8.7 Score=42.75 Aligned_cols=73 Identities=7% Similarity=0.097 Sum_probs=54.6
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeE---EEeeC--CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAE---MTTVG--GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~---vst~g--~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
+..+.++|.....+..|++|+-+|+++||.|+... +..-+ ...++.|.+....+. ..+...+++.|.+++...
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~--~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGD--ALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCc--cccHHHHHHHHHHHHHHH
Confidence 46799999998999999999999999999999995 34422 345577878776553 355666776666666654
No 113
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.74 E-value=13 Score=27.05 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=38.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.+.+.=+++||-|.+++++|- +..|........+ +.....+.+++.++ ....+.+.++|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence 456677899999999999999 6677655544332 44555566777631 2334445554443
No 114
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=82.36 E-value=8.5 Score=35.05 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=51.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE-EEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTK-TVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~-~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
..+-+.-.++||.|.++|..|...|++......-......+ +.|.+.+. |. ..-..+++||.++-...
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e-g~---~~~~~v~~AL~el~~~t 263 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE-GH---IDDPLVKEALEELKEIT 263 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe-cC---cCcHhHHHHHHHHHhhe
Confidence 44444455999999999999999999999999988876655 77888887 32 23367888888775543
No 115
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=81.59 E-value=2.4 Score=43.39 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=51.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
..++|...+|+|+|..|+.+|. +|..|.++|.|..+..+|.+. . +..-..+.+++..++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~----~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--P----GFDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--C----cccHHHHHHHHHHHHh
Confidence 5789999999999999999999 999999999999999999887 1 2345778888888765
No 116
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=79.06 E-value=2.7 Score=35.49 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=53.7
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
..+.|.....++||+...|.++..+.|..++.+.++.+|+.+-.++.+... -..+..|+++|..+
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-----~dav~~le~~l~~l 68 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-----WDAVTLLEATLPLL 68 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-----HHHHHHHHHHhhcc
Confidence 458888899999999999999999999999999999999987777666544 33467777777653
No 117
>PRK08526 threonine dehydratase; Provisional
Probab=79.02 E-value=14 Score=35.34 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=50.4
Q ss_pred ccCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-----CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 155 QEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-----GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 155 ~~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-----~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
..++.+.+.+.-+++||-|.++++.|-+.+.+|+........ +.+...+.+++. ..+....|.++|++
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~l~~ 394 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK----GKEHQEEIRKILTE 394 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999998875543 334555556665 23445555555543
No 118
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=78.22 E-value=12 Score=28.67 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=38.5
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
.....|++.-+++||+|.+|...|..-|..|-+.++...+..-+.-+.+-+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence 3456788889999999999999999988888888777665443333443333
No 119
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=77.86 E-value=14 Score=35.18 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred EccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhc
Q 024930 165 CCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRA 232 (260)
Q Consensus 165 ~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~ 232 (260)
.-.++||.|.+++.+|...|+.......-...+. .-+.|.+.+. |. .....+++||..+-....
T Consensus 303 ~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e-g~---~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 303 ATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ-AN---LRSAEMQKALKELGEITR 367 (386)
T ss_pred EcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe-CC---CCCHHHHHHHHHHHHhcC
Confidence 3369999999999999999999999998877655 4588999997 32 223567888877755433
No 120
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=77.78 E-value=9.6 Score=39.04 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=43.9
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-CCEEEEEEEEEEc
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-GGRTKTVVVIEWV 208 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g~~~~~~~~vk~~ 208 (260)
....+.|.|...+++|+|.+|+++|-+.+..|+++++.+. ++.....|.+++.
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~ 677 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK 677 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC
Confidence 3467888899999999999999999999999999999886 4444455557776
No 121
>PRK11898 prephenate dehydratase; Provisional
Probab=77.19 E-value=13 Score=33.68 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=47.6
Q ss_pred EEEEEEccC-CCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE-EEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCED-RPGLNRELTRAISLVRARAVRAEMTTVGGRTK-TVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~-r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~-~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
..+-+...+ ++|.|.++++.|...|+.+++...-...+..+ +.|.+++. |. .+...++++|..+-.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e-g~---~~~~~~~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE-GH---IDDVLVAEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE-cc---CCCHHHHHHHHHHHH
Confidence 344445544 59999999999999999999999887765544 88888886 43 232467777765533
No 122
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=76.33 E-value=0.9 Score=45.83 Aligned_cols=60 Identities=28% Similarity=0.399 Sum_probs=50.7
Q ss_pred hhhhhccHHHHHHHHHHHHhHHHHHhhcCCC-----CccccccHHHHHHHHHHHHHHHHHHHHHh
Q 024930 55 DACKSHKEAERRRRQRINSHLSTLRTLLPNT-----IKTDKASLLAEVVHHVKELRSQATDVAER 114 (260)
Q Consensus 55 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-----~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 114 (260)
.....|.-+|.+||..|+-.|..|-+++-+. .|+.++.-++.++.||..++.+...++++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 3567799999999999999999999999765 46677777999999999998887776654
No 123
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=74.36 E-value=11 Score=31.84 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=50.7
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEE--EeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEM--TTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~v--st~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
....+.+++...+|||++-++...|..+|+.+.+-.. ....+.--.-|++.+.-..-...+...|++++...-
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~ 163 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALC 163 (176)
T ss_pred CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHH
Confidence 4567999999999999999999999999888866543 333444444555554322223456778887776653
No 124
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.77 E-value=12 Score=27.36 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=40.6
Q ss_pred EEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCC
Q 024930 163 TLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGG 211 (260)
Q Consensus 163 ~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~ 211 (260)
+++-..||-.|.++.-||..|+.-|.+|.|. ..+++-+.+..+-..++.
T Consensus 4 ElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~ 54 (77)
T cd04898 4 ELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHD 54 (77)
T ss_pred cccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCC
Confidence 4455578999999999999999999999985 567888988887776553
No 125
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=67.67 E-value=40 Score=24.95 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=48.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
..+.+....+|+.|-+|+.+.+--|+.|...++++. ++..-..|++ . + .-..+.|...|.++.+-
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV--~-s---~R~~~lL~~QLeKl~Dv 70 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV--D-S---DRSVDLLTSQLEKLYDV 70 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE--c-C---CCChHHHHHHHHHHccc
Confidence 456677789999999999999999999999999887 5554444433 2 2 24567888888777663
No 126
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=67.21 E-value=34 Score=22.75 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=25.9
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 161 KATLCCE---DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 161 ~I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
.|.+.+. +.++++.+|+++|.+.++.|.-...+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555553 568999999999999999997665433
No 127
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=63.93 E-value=37 Score=21.94 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=25.8
Q ss_pred EEEEcc---CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 162 ATLCCE---DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 162 I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
|+|.+. +.++.+.+++++|.+.++.+.....+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 455443 568999999999999999998876544
No 128
>PRK00907 hypothetical protein; Provisional
Probab=63.88 E-value=35 Score=25.79 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=47.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcC----CeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVR----ARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~----L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+-|+|-....+++...|+++++.+. ...+..+-|..|..+-.++.+.+. +.+..+.|-++|.+
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~ 84 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRD 84 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 7788888899999999999999774 344444556677776677777775 35677888888764
No 129
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=63.74 E-value=25 Score=28.06 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=36.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEE
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVV 203 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~ 203 (260)
.|++.-+++||-|..++.+|.+.|+.+-.-++.-.+++-..-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm 47 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM 47 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE
Confidence 5788889999999999999999999998888887776544333
No 130
>PLN02317 arogenate dehydratase
Probab=63.30 E-value=51 Score=31.42 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred EEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE---------------EEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 164 LCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR---------------TKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 164 I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~---------------~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
+.-++++|.|.++|.+|...++.+.+...-...+. .-+.|.+.+. +. ..-..++++|.++=
T Consensus 288 fsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~e-g~---~~d~~~~~aL~~L~ 363 (382)
T PLN02317 288 FSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFE-AS---MADPRAQNALAHLQ 363 (382)
T ss_pred EEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEE-cC---cCCHHHHHHHHHHH
Confidence 33367899999999999999999999988776544 4588888886 32 22245666765553
Q ss_pred H
Q 024930 229 E 229 (260)
Q Consensus 229 ~ 229 (260)
+
T Consensus 364 ~ 364 (382)
T PLN02317 364 E 364 (382)
T ss_pred H
Confidence 3
No 131
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=61.00 E-value=39 Score=21.27 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
+.+|.+.+++++|.+.++.+.....+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 467999999999999999998776543
No 132
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=58.61 E-value=15 Score=26.97 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=43.9
Q ss_pred EEEEccC-CCChHHHHHHHHHhcCCeEEEeEEEeeCCEE---------EEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 162 ATLCCED-RPGLNRELTRAISLVRARAVRAEMTTVGGRT---------KTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 162 I~I~c~~-r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~---------~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
|.|...+ ..|.+..|.++|.++|+.|.+.+- ..+++ ..++.+.+. +. ..+...|+.+|.++-.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~-~~--~~~~~~lr~~L~~la~ 74 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVR-GQ--PADLEALRAALLELAS 74 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEe-CC--CCCHHHHHHHHHHHhc
Confidence 4455566 789999999999999999988754 23332 446666666 33 3577888888876543
No 133
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=57.00 E-value=47 Score=28.17 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=37.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
+-++|..+++||.|.+|.-.+.++|..|+.++--..++--...+..++.
T Consensus 3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 3467788899999999999999999999999765444323455556666
No 134
>PRK14639 hypothetical protein; Provisional
Probab=56.93 E-value=50 Score=26.81 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=47.2
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhc---c----CCCCCCCCCCCccc
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRA---S----GYGLGRIGSGIKRA 247 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~---~----~~~~~~~~~~~kr~ 247 (260)
+-.+++++|++++...+...++...-.+.+.-..|. .-.++..+.++|..+|+..- . +-++++...+-|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv-~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~ 80 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGV-NLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI 80 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCH
Confidence 456789999999999999887765555555433232 34567788999999998541 1 23555555555554
No 135
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=55.80 E-value=50 Score=32.30 Aligned_cols=62 Identities=13% Similarity=-0.012 Sum_probs=45.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE--EEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTK--TVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~--~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
+.|-+...+++|.|.++|+.|+..|+.+.+...-...+..+ +.|.+.+. +. . ..++++|..+
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E-g~--~---~~l~~aL~~L 95 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE-LF--H---YGLQEAMDLL 95 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE-cC--H---HHHHHHHHHH
Confidence 44445557789999999999999999999998877755544 57778876 32 1 3455555444
No 136
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=55.38 E-value=64 Score=31.31 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=44.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDI 227 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~v 227 (260)
..|-+.-.+++|.|.+++++|...|+.+.+...-...+. --+.|.+.+. |. .+ ..++++|..+
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e-g~---~~-~~v~~aL~~L 80 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD-EA---SD-RKLEGVIEHL 80 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe-cC---cc-HHHHHHHHHH
Confidence 344444477899999999999999999999988765433 3477888886 32 12 4555555554
No 137
>PRK14637 hypothetical protein; Provisional
Probab=55.09 E-value=1e+02 Score=25.30 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
+.-|....+-.+++++|++++...+...++.-...+.+.-..|. .-.++..+.++|..+|+.
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV-~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGV-GLDDCARVHRILVPRLEA 67 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCC-CHHHHHHHHHHHHHHhcc
Confidence 34577788888999999999999998877654434444322232 334567888888888863
No 138
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=51.94 E-value=1.1e+02 Score=29.22 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=45.6
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEe-eC-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTT-VG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst-~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.++.+.+.+.=+++||-|.++++.+-..+.+|+..+.-. .+ +.....+.+++.+ ....+.|.++|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 578899999999999999999997777777888776552 22 3334445566651 2334455555543
No 139
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=51.68 E-value=12 Score=30.96 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCC--CccccccHHHHHHHHHHHHHH
Q 024930 63 AERRRRQRINSHLSTLRTLLPNT--IKTDKASLLAEVVHHVKELRS 106 (260)
Q Consensus 63 ~Er~RR~~in~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~ 106 (260)
.|+.|-.++++.+.-|+.|+|.. .++.+.--|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 58899999999999999999976 333333335555566655543
No 140
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=51.57 E-value=71 Score=26.14 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=38.1
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
+-.+++++|++++...+...++.-...+.+.-.+|. .-.++..+.++|..+|+..
T Consensus 13 ~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv-~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 13 IEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGI-DLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCC-CHHHHHHHHHHHHHHhccc
Confidence 345667899999999998876655444445433332 3456678899999999844
No 141
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=51.23 E-value=23 Score=24.53 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=28.0
Q ss_pred CceEEEEEEcc----CCCChHHHHHHHHHhcCCeEEEeE
Q 024930 157 QQLLKATLCCE----DRPGLNRELTRAISLVRARAVRAE 191 (260)
Q Consensus 157 ~~~v~I~I~c~----~r~glL~~Il~aLe~L~L~Vv~a~ 191 (260)
.....|+|.+. +.+|++.+++.+|.+.|+.|....
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 44566777765 579999999999999999998777
No 142
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=50.78 E-value=99 Score=25.82 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=39.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee---CCEEEEEEEEEEc
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV---GGRTKTVVVIEWV 208 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~---g~~~~~~~~vk~~ 208 (260)
.+.+.|.-.++||.|+++++-|-+.|..|++.--+.- ++++--.+.++..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 3566667789999999999999999999999876655 6766666655554
No 143
>PRK14630 hypothetical protein; Provisional
Probab=50.71 E-value=75 Score=25.88 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhcc-----CCCCCCCCCCCccc
Q 024930 174 RELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRAS-----GYGLGRIGSGIKRA 247 (260)
Q Consensus 174 ~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~-----~~~~~~~~~~~kr~ 247 (260)
.-+-.+++++|++++...+..-++.....+.+.-.+|. .-.++..+.++|...|+.+-. +-++++...+-|+.
T Consensus 12 ~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV-~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGldRpL~~~ 89 (143)
T PRK14630 12 NLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSF-GVDTLCDLHKMILLILEAVLKYNFSLEISTPGINRKIKSD 89 (143)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCC-CHHHHHHHHHHHHHHhcccCCCCeEEEEeCCCCCCcCCCH
Confidence 34445689999999999988766544434444333332 345677888999888876522 23555555555554
No 144
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.61 E-value=71 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=25.6
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 161 KATLCCE---DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 161 ~I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
.|.+.+. +.++.+.+++++|.+.++.+.-...+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3455553 568999999999999999997665433
No 145
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=49.79 E-value=1e+02 Score=30.31 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=44.3
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+++.+.+.|.=+++||-|.+++++|-. ..|+..+....+ +.....+.+++. + ....+.|.++|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-~---~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-N---PQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-C---HHHHHHHHHHHHH
Confidence 578899999999999999999999997 455555554433 233333446665 2 3455666666654
No 146
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=49.13 E-value=23 Score=34.87 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=33.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG 196 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g 196 (260)
+.++|.|.+|-|+..+|++.|...++++....|...|
T Consensus 1 mrl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred CeEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 3688999999999999999999999999999986653
No 147
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=47.77 E-value=22 Score=21.50 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 024930 63 AERRRRQRINSHLSTLRT 80 (260)
Q Consensus 63 ~Er~RR~~in~~~~~Lr~ 80 (260)
-=|+||+.++.++.+||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347889999999999985
No 148
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=47.35 E-value=1.3e+02 Score=33.85 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=50.5
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeE-----EEe-e-------------CCEEEEEEEEEEccCCCCcccH
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAE-----MTT-V-------------GGRTKTVVVIEWVGGGGGNEEM 217 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~-----vst-~-------------g~~~~~~~~vk~~~g~~~~~~~ 217 (260)
.....|.|.|++.|.|+-.|..+|..+|+.|.... +.. - ++.....+++++..-. .....
T Consensus 15 ~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~-d~~~~ 93 (1528)
T PF05088_consen 15 SDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQS-DPEEL 93 (1528)
T ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCC-CHHHH
Confidence 34688999999999999999999999999987763 211 0 2333455556665322 24456
Q ss_pred HHHHHHHHHHHHhh
Q 024930 218 AVLQRALKDIVENR 231 (260)
Q Consensus 218 ~~LkeAL~~vl~~~ 231 (260)
+.|++.|..+|..-
T Consensus 94 ~~L~~~L~~VL~dV 107 (1528)
T PF05088_consen 94 EALREDLERVLEDV 107 (1528)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777766543
No 149
>PRK14647 hypothetical protein; Provisional
Probab=46.75 E-value=1.1e+02 Score=25.28 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
+-.+++++|++++...+...++.....+.+.-..|. .-.++..+.++|..+|+..
T Consensus 14 i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gv-slddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 14 AEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGV-NLDDCAEVSRELSEILDVE 68 (159)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHHHHccc
Confidence 344578899999999999877644433444322232 3456788899999999843
No 150
>PRK12483 threonine dehydratase; Reviewed
Probab=46.73 E-value=1.3e+02 Score=29.93 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.1
Q ss_pred ccCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEc
Q 024930 155 QEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWV 208 (260)
Q Consensus 155 ~~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~ 208 (260)
.+++.+.+.|.=+++||-|.++++.|-.. +|+..+....+ +.....+.+++.
T Consensus 341 ~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 393 (521)
T PRK12483 341 GEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH 393 (521)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC
Confidence 36788999999999999999999999888 77766655433 233334446665
No 151
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=45.20 E-value=1.6e+02 Score=26.03 Aligned_cols=39 Identities=5% Similarity=0.000 Sum_probs=32.2
Q ss_pred ceEEEEEEccCCCC--hHHHHHHHHHhcCCeEEEeEEEeeC
Q 024930 158 QLLKATLCCEDRPG--LNRELTRAISLVRARAVRAEMTTVG 196 (260)
Q Consensus 158 ~~v~I~I~c~~r~g--lL~~Il~aLe~L~L~Vv~a~vst~g 196 (260)
..+.++|.|.+.++ +...+++.|++.++.+.+.++...+
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 45788899987664 5888999999999999999987653
No 152
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.12 E-value=35 Score=24.58 Aligned_cols=23 Identities=9% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 024930 94 LAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
+..||+.|.-||-++++|++++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999987765
No 153
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.03 E-value=91 Score=20.72 Aligned_cols=27 Identities=7% Similarity=0.039 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
+.+|.+.+++++|.+.++.+.-...++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 568999999999999999996665444
No 154
>PRK00341 hypothetical protein; Provisional
Probab=44.87 E-value=1e+02 Score=23.15 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=44.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEE----EeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAV----RAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv----~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+-++|-....+++...|.++++.+. ++- ...-|..|..+-.++.+.+. +++..+.|-++|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 6777888888999999999998764 443 33445566666677777776 35667777777764
No 155
>PRK14638 hypothetical protein; Provisional
Probab=43.75 E-value=1.1e+02 Score=25.06 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=38.1
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
+-.+++++|++++...+...++.....+.+.-.+|.-.-.++..+.++|..+|+..
T Consensus 14 ~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 14 AERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDRE 69 (150)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccc
Confidence 34457889999999999987654444444443334223456788899999999843
No 156
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=43.50 E-value=7.4 Score=39.57 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=47.4
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC-----CccccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-----IKTDKASLLAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-----~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
+..|..++|++|-.+.++|..|-+|.|.. .+..+++||. +.++.+++.-+.+.+...
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 34588999999999999999999999954 5678999998 888888888777765443
No 157
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=43.03 E-value=1e+02 Score=20.76 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=23.1
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhcCCeEE
Q 024930 161 KATLCCE---DRPGLNRELTRAISLVRARAV 188 (260)
Q Consensus 161 ~I~I~c~---~r~glL~~Il~aLe~L~L~Vv 188 (260)
.|.|.+. ..+|++.+++++|.+.++.|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 3455553 679999999999999999996
No 158
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=43.01 E-value=1.2e+02 Score=21.34 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=35.7
Q ss_pred ceEEEEEEccCCCC-hHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 158 QLLKATLCCEDRPG-LNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 158 ~~v~I~I~c~~r~g-lL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
..+.+...-+.... +++++.+. -...+.|++++|..+++..+-.|.+.+.
T Consensus 3 ~l~~l~f~g~~~~~piis~l~~~-~~v~~nIl~g~i~~i~~~~~G~l~l~l~ 53 (76)
T PF09383_consen 3 RLVRLTFTGNSAQEPIISQLIRE-FGVDVNILHGNIEEIQGTPFGILILELP 53 (76)
T ss_dssp EEEEEEEESCSSSSCHHHHHHHH-HT-EEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEEEEEcCCCcCchHHHHHHHH-hCCCEEEEEEEeEEcCCeeEEEEEEEEE
Confidence 34666666655443 44444433 3567889999999999999999999997
No 159
>PRK09224 threonine dehydratase; Reviewed
Probab=41.96 E-value=1.8e+02 Score=28.66 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=43.4
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+++.+.+.|.=+++||-|.++++.|. +..|+..+....+ +.....+.+++.+. +.+.+.|.++|.+
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~---~~~~~~i~~~L~~ 391 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG---QEERAEIIAQLRA 391 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh---hhHHHHHHHHHHH
Confidence 56789999999999999999999998 5666655544433 22333344666522 1225666666654
No 160
>PRK14634 hypothetical protein; Provisional
Probab=41.85 E-value=1.2e+02 Score=25.10 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=36.9
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCC-CCcccHHHHHHHHHHHHHhh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGG-GGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~-~~~~~~~~LkeAL~~vl~~~ 231 (260)
+-.+++++|++++...+..-++.....+.+.-.+|. -.-.++..+.++|..+|+..
T Consensus 13 ~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 13 ASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhccc
Confidence 334567899999999998876544334444333341 13345678899999999843
No 161
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=41.57 E-value=1.2e+02 Score=21.08 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEE
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMT 193 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vs 193 (260)
+.++.+.+++++|.+.++.+.-.+.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEec
Confidence 56899999999999999999776654
No 162
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.00 E-value=1e+02 Score=20.23 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=25.1
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 161 KATLCCE---DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 161 ~I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
.|.+.+. +.++++.+++++|.+.++.+.-...+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3445443 567999999999999999986655433
No 163
>PRK14646 hypothetical protein; Provisional
Probab=40.85 E-value=1.9e+02 Score=23.84 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCC-CCcccHHHHHHHHHHHHHh
Q 024930 173 NRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGG-GGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 173 L~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~-~~~~~~~~LkeAL~~vl~~ 230 (260)
..-+-.+++++|++++.+.+...++.....+.+.-.+|. -.-.++..+.++|..+|+.
T Consensus 10 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 10 EILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 344556678999999999999877655445555433221 1345677889999999973
No 164
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=40.57 E-value=1.9e+02 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=25.0
Q ss_pred EEEEccCCCChHHHHHHHHHhc--CCeEEEeEEEee
Q 024930 162 ATLCCEDRPGLNRELTRAISLV--RARAVRAEMTTV 195 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L--~L~Vv~a~vst~ 195 (260)
+-|..+++||-|..|+++|-.. +|+-+-|-++--
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek 107 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK 107 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC
Confidence 3455789999999999999876 555565655544
No 165
>PRK02047 hypothetical protein; Provisional
Probab=40.33 E-value=1.4e+02 Score=22.37 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=45.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHhc--C--CeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLV--R--ARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L--~--L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
+.++|-....+++...|.++++.+ + ...+..+-|..|..+-.++.+.+. +.+....|-++|.+
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~ 83 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT----SREQLDNIYRALTG 83 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 667777777888888999998876 4 344666777778877788878776 35666777777654
No 166
>PRK14633 hypothetical protein; Provisional
Probab=40.23 E-value=1.7e+02 Score=23.94 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 175 ELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 175 ~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
-+-.+++++|++++...+...++.++-++ +.-.+|. .-.++..+.++|..+|+.
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv-~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGV-SVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCC-CHHHHHHHHHHHHHHhcc
Confidence 34556789999999999987766433322 2222232 345678899999999984
No 167
>PRK14640 hypothetical protein; Provisional
Probab=39.46 E-value=1.8e+02 Score=23.89 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 175 ELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 175 ~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
-+-.+++++|++++...+...++.-...+.+.-.+|. .-.++..+.++|..+|+.
T Consensus 11 li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv-~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 11 LLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGV-SVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCC-CHHHHHHHHHHHHHHhcc
Confidence 3445578899999999998876544444444333332 345678899999999984
No 168
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.37 E-value=1.2e+02 Score=20.54 Aligned_cols=31 Identities=0% Similarity=-0.207 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEeeCCE
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTTVGGR 198 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~ 198 (260)
+.+|++.+++++|.+.++.|.-....+.+-.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~s 42 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVN 42 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccce
Confidence 4578999999999999999977765554443
No 169
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.33 E-value=1.1e+02 Score=19.85 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
+.++.+.+++++|.+.++.+...+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 5689999999999999999977763
No 170
>PRK11191 RNase E inhibitor protein; Provisional
Probab=38.21 E-value=1.7e+02 Score=23.77 Aligned_cols=70 Identities=10% Similarity=-0.084 Sum_probs=48.9
Q ss_pred EEEccCCCChHHHHHHHHHhcCCeEEEeEE-EeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccC
Q 024930 163 TLCCEDRPGLNRELTRAISLVRARAVRAEM-TTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASG 234 (260)
Q Consensus 163 ~I~c~~r~glL~~Il~aLe~L~L~Vv~a~v-st~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~ 234 (260)
.+.+.. ...|-+++..+..+|.+|..+.- ..-++..+++|.+-..... ....+......|..+..+....
T Consensus 37 ~~~f~d-~~~lek~a~~a~klGyeV~~~ee~e~edg~~~~~~~~~~e~~l-~~e~I~~~~~~L~~LA~k~~g~ 107 (138)
T PRK11191 37 HFSADD-FDKLEKAAVEAFKLGYEVTDAEELELEDGDVIFCCDAVSEVAL-NAELIDAQVEQLLALAEKFDVE 107 (138)
T ss_pred EEecCC-HHHHHHHHHHHHHcCCeeecccccccCCCCeEEEEEEEecCCC-CHHHHHHHHHHHHHHHHHhCCC
Confidence 344543 36678999999999999987743 3667777777776554322 3445677778888888888774
No 171
>PRK08818 prephenate dehydrogenase; Provisional
Probab=37.66 E-value=1.9e+02 Score=27.34 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=32.2
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
.++||.|.+|+..|...++.+.+.++...... .+.|.+.+.
T Consensus 304 ~d~pG~L~~vl~~la~~~INit~Ies~~~r~~-~y~f~i~~~ 344 (370)
T PRK08818 304 EDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAG-ELHFRIGFE 344 (370)
T ss_pred CCCCChHHHHHHHHHHcCcccceEEEecccCc-eEEEEEEEe
Confidence 39999999999999999999999988333332 234777776
No 172
>PRK08639 threonine dehydratase; Validated
Probab=36.86 E-value=2.1e+02 Score=27.28 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=43.4
Q ss_pred ccCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-C-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 155 QEQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-G-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 155 ~~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
..++.+.+.+.=+++||-|.++++.+-..+-+|+..+.-.. + +.-...+.+++. + .+..+.|.++|.+
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~-~---~~h~~~i~~~L~~ 401 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK-D---AEDYDGLIERMEA 401 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC-C---HHHHHHHHHHHHH
Confidence 36788999999999999999999966666558887755421 2 111222335554 1 2344556665544
No 173
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=36.75 E-value=1.5e+02 Score=20.76 Aligned_cols=31 Identities=3% Similarity=-0.123 Sum_probs=24.7
Q ss_pred EEEEEc---cCCCChHHHHHHHHHhcCCeEEEeE
Q 024930 161 KATLCC---EDRPGLNRELTRAISLVRARAVRAE 191 (260)
Q Consensus 161 ~I~I~c---~~r~glL~~Il~aLe~L~L~Vv~a~ 191 (260)
+|.|.+ .+.+|.+.+|+++|.+.++.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455543 3568999999999999999997764
No 174
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=36.53 E-value=1.3e+02 Score=20.02 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.6
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeE
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAE 191 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~ 191 (260)
.+.+|.+.+++++|.+.++.|.-..
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 5778999999999999999996443
No 175
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=36.47 E-value=1.2e+02 Score=19.60 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
+.++.+.+++++|.+.++.+.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 5689999999999999999977763
No 176
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.40 E-value=55 Score=24.08 Aligned_cols=23 Identities=9% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 024930 94 LAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
+..||+-|.-||.++++|++++.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999988754
No 177
>PRK14645 hypothetical protein; Provisional
Probab=35.75 E-value=2.4e+02 Score=23.26 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCC-CCcccHHHHHHHHHHHHHhh
Q 024930 173 NRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGG-GGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 173 L~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~-~~~~~~~~LkeAL~~vl~~~ 231 (260)
-.-+-.+++++|++++...+...++.-...+.+.-.++. -.-.++..+.++|..+|+..
T Consensus 12 ~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 12 QQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 334456678999999999998776543333334322222 13345678899999999843
No 178
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=35.18 E-value=1.3e+02 Score=19.77 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
..+|...+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 5689999999999999999988843
No 179
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.97 E-value=63 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 024930 94 LAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
+..||+-|.-|+.++++|++++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988643
No 180
>PRK14632 hypothetical protein; Provisional
Probab=34.89 E-value=1.7e+02 Score=24.53 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 177 TRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 177 l~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
-.+++++|++++.+.+.. ++.....+.+.-.+|. .-.++..+.++|..+|+..
T Consensus 15 ~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV-~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 15 GPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGV-TIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCC-CHHHHHHHHHHHHHHhccc
Confidence 345678999999999885 4433233333322232 3456778899999999843
No 181
>PRK13702 replication protein; Provisional
Probab=34.47 E-value=1.1e+02 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=21.0
Q ss_pred hhccHHHHHHH--HHHHHhHHHHHhhcCCC
Q 024930 58 KSHKEAERRRR--QRINSHLSTLRTLLPNT 85 (260)
Q Consensus 58 ~~h~~~Er~RR--~~in~~~~~Lr~lvP~~ 85 (260)
.....+||+|. .+..+--.+|.-.||+.
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~ 51 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNP 51 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHH
Confidence 55888999985 55566667888888865
No 182
>PRK14636 hypothetical protein; Provisional
Probab=33.41 E-value=2.6e+02 Score=23.54 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccC-CCCcccHHHHHHHHHHHHHhh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGG-GGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g-~~~~~~~~~LkeAL~~vl~~~ 231 (260)
+-.+++++|++++..++...++.....+.+.-.++ .-.-.++..+.++|..+|+..
T Consensus 11 vep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 11 IEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccC
Confidence 33457889999999998877654433444432222 113356778899999999843
No 183
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.34 E-value=2e+02 Score=20.86 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=40.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEE-EEEccCCCCcccHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVV-IEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~-vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
....|.=+.+||-|.+.++.|-. +-+|..-+....++..-.+|+ +++. + . +...|.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~-~---~-~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVP-D---A-DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeC-h---H-HHHHHHHHHHH
Confidence 34556668999999999999933 678887777766665555655 5554 1 2 44555555544
No 184
>PRK14641 hypothetical protein; Provisional
Probab=32.14 E-value=1.9e+02 Score=24.40 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=34.4
Q ss_pred HhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 181 SLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 181 e~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
+++|++++...+...++.....+.+.- +++-.-.++..+.++|..+|+.
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~-~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDA-DTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeC-CCCCCHHHHHHHHHHHHHHhCc
Confidence 489999999999987765444444442 2322345677889999999984
No 185
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.95 E-value=1.8e+02 Score=24.04 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHhcCCeEEEeEEEeeCC-EEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 177 TRAISLVRARAVRAEMTTVGG-RTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 177 l~aLe~L~L~Vv~a~vst~g~-~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
-.++++||++++.+.+...|. .++-++ +.-. |.-.-.++..+.+++..+|+
T Consensus 15 ep~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~-g~v~lddC~~vSr~is~~LD 66 (153)
T COG0779 15 EPVVESLGFELVDVEFVKEGRDSVLRIY-IDKE-GGVTLDDCADVSRAISALLD 66 (153)
T ss_pred HHhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCC-CCCCHHHHHHHHHHHHHHhc
Confidence 345688999999999999984 444333 3222 33244567899999999998
No 186
>PRK14643 hypothetical protein; Provisional
Probab=31.80 E-value=3e+02 Score=22.89 Aligned_cols=55 Identities=2% Similarity=0.015 Sum_probs=37.4
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEE---ccCCCCcccHHHHHHHHHHHHHh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEW---VGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~---~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
+-.+++++|++++..++..-++.....+.+.- .+|.-.-.++..+.++|..+|+.
T Consensus 15 ~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~ 72 (164)
T PRK14643 15 VNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQ 72 (164)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCc
Confidence 34457889999999999988765544444431 12322345667889999999984
No 187
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.41 E-value=2e+02 Score=20.73 Aligned_cols=26 Identities=4% Similarity=-0.063 Sum_probs=22.3
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
.+.+|.+.+|+++|.+.++.|-....
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 46689999999999999999887753
No 188
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=29.98 E-value=62 Score=23.60 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=46.4
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhc----CCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLV----RARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L----~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
....+++.....++....|.++++.+ .-..+..+.+..|..+-.++.+.+. ..+....|-++|.
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~----s~eq~~~iy~~L~ 76 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVE----SAEQVDAIYRELK 76 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEES----SHHHHHHHHHHHT
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEEC----CHHHHHHHHHHhc
Confidence 34778888888888888998888885 5677777777778887788878776 2455566666554
No 189
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.94 E-value=2e+02 Score=20.33 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=35.2
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
...+|.+.+|+++|.+.++.|-.... .. .-..|.+.-.+. .. -..|+.+|.+-|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~~d~---~~-~~~~~~~l~~~l~~ 67 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDNTGS---TS-DQLLTQALLKELSQ 67 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEecccc---ch-hHHHHHHHHHHHHh
Confidence 46789999999999999999887753 22 223333333211 11 14566677666665
No 190
>PF15392 Joubert: Joubert syndrome-associated
Probab=29.93 E-value=1.7e+02 Score=27.18 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=35.4
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhc-----CCCCccccccHHHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLL-----PNTIKTDKASLLAEVVHHVKELRSQATD 110 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lv-----P~~~k~dk~sil~~ai~yi~~L~~~~~~ 110 (260)
.+.-..++.|+||++|.+.+.+|..+- |.+.+.+-..+-..-|.-.++++.+..+
T Consensus 56 RrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdR 115 (329)
T PF15392_consen 56 RREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDR 115 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 345688999999999999999998876 4444444333334444444444444443
No 191
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.73 E-value=1.5e+02 Score=18.67 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=22.9
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeEEE
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAEMT 193 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~vs 193 (260)
.+.+|.+.+++++|.+.++.+......
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 467899999999999999999776543
No 192
>PRK04998 hypothetical protein; Provisional
Probab=29.27 E-value=2.3e+02 Score=20.90 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=42.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcC--CeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVR--ARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~--L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
..+++--...+++...|.++++... .+.+..+-|..|..+-.++.+.+. +.+....|-++|.+
T Consensus 16 ~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~----s~eq~~~iY~~L~~ 80 (88)
T PRK04998 16 FTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITAT----SIEQVETLYEELAK 80 (88)
T ss_pred ceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhc
Confidence 5666666677889999999998762 233556667777777777777776 24556666666653
No 193
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.13 E-value=1.8e+02 Score=19.57 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHhcCCeEEEe
Q 024930 168 DRPGLNRELTRAISLVRARAVRA 190 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a 190 (260)
..+|++.+++++|.+.++.++..
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEE
Confidence 57899999999999987776444
No 194
>PLN02550 threonine dehydratase
Probab=27.81 E-value=3.7e+02 Score=27.25 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=43.6
Q ss_pred cCceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 156 EQQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 156 ~~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.+..+.+.|.-+++||-|.++++.|-.. +|+..+....+ +.....+.+++. + ....+.|.++|.+
T Consensus 414 ~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~-~---~~~~~~i~~~l~~ 479 (591)
T PLN02550 414 RQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH-T---EQELQALKKRMES 479 (591)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC-C---HHHHHHHHHHHHH
Confidence 4567889999999999999999999886 66666554432 344444556665 2 3444555555544
No 195
>PRK06349 homoserine dehydrogenase; Provisional
Probab=26.93 E-value=3.3e+02 Score=26.03 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=29.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
.++|++...++||.|.+|...|.+.++.+.+..-
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEe
Confidence 5788888899999999999999999998886643
No 196
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=26.54 E-value=2.9e+02 Score=21.00 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 024930 94 LAEVVHHVKELRSQATDVAERDWN 117 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~~ 117 (260)
+.+.+.-++.+|+++++++++...
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~ 30 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQ 30 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777788889999999888763
No 197
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.37 E-value=2.2e+02 Score=19.81 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 172 LNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 172 lL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
-+..+++.+++.| +..+.++-. |+.++..+ . ....++.|.++|++...
T Consensus 35 ~i~~~~~~~~~~G--a~~~~~sGsG~G~~v~~l~----~----~~~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 35 EIDELKEAAEENG--ALGAKMSGSGGGPTVFALC----K----DEDDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHTT--ESEEEEETTSSSSEEEEEE----S----SHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCC--CCceecCCCCCCCeEEEEE----C----CHHHHHHHHHHHHHhCC
Confidence 3677888888888 777788877 77665544 2 24566788888877654
No 198
>PRK02001 hypothetical protein; Validated
Probab=26.15 E-value=2.4e+02 Score=23.26 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHhcCCeEEEeEEEeeCCEEEEEEEEEEc-cCCCCcccHHHHHHHHHHHHHhhcc----CCCCCCCCCCCccc
Q 024930 179 AISLVRARAVRAEMTTVGGRTKTVVVIEWV-GGGGGNEEMAVLQRALKDIVENRAS----GYGLGRIGSGIKRA 247 (260)
Q Consensus 179 aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~-~g~~~~~~~~~LkeAL~~vl~~~~~----~~~~~~~~~~~kr~ 247 (260)
+++++|++++...+... +. +.+-+. +++-.-.++..+.++|..+|+.... +-++++...+-|+.
T Consensus 14 ~~~~~g~eLvdv~~~~~-~~----lrV~ID~~~Gv~lddC~~vSr~is~~LD~~d~~Y~LEVSSPGldRpL~~~ 82 (152)
T PRK02001 14 LLEGPELFLVDLTISPD-NK----IVVEIDGDEGVWIEDCVELSRAIEHNLDREEEDFELEVGSAGLTSPLKVP 82 (152)
T ss_pred hhhhcCcEEEEEEEEcC-CE----EEEEEECCCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcCCCH
Confidence 45789999999998853 22 222232 2222345677889999999985433 33555554454443
No 199
>PRK14635 hypothetical protein; Provisional
Probab=26.10 E-value=3.8e+02 Score=22.17 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc---cCCCCcccHHHHHHHHHHHHHh--hcc----CCCCCCCCCC
Q 024930 173 NRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV---GGGGGNEEMAVLQRALKDIVEN--RAS----GYGLGRIGSG 243 (260)
Q Consensus 173 L~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~---~g~~~~~~~~~LkeAL~~vl~~--~~~----~~~~~~~~~~ 243 (260)
+..+++.+-.+|++++...+...++.....+.+.-. +|+-.-.++..+.++|..+|+. +.. +-++++...+
T Consensus 8 i~~l~~~~~~~g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGldRp 87 (162)
T PRK14635 8 ISEILDRVLALPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAERK 87 (162)
T ss_pred HHHHHHHHHCCCCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCCc
Confidence 444444444579999999998887664434444321 1222334667889999999984 211 3355555555
Q ss_pred Cccc
Q 024930 244 IKRA 247 (260)
Q Consensus 244 ~kr~ 247 (260)
-|+.
T Consensus 88 L~~~ 91 (162)
T PRK14635 88 LRLP 91 (162)
T ss_pred CCCH
Confidence 5554
No 200
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=25.97 E-value=2.8e+02 Score=20.92 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=45.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeE----EEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAE----MTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~----vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.+.+++....++++--.|+++++.+.-+-..-. -|+-|+..--.+.+.+. .-++.+.|.++|..
T Consensus 15 ~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~----~~EQ~e~ly~eL~~ 82 (90)
T COG2921 15 TFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRAT----NIEQVEALYRELRK 82 (90)
T ss_pred cceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 477788888899999999999999854444333 35666666666666665 24567777777764
No 201
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=25.28 E-value=2.6e+02 Score=19.97 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=26.6
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEE
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVV 203 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~ 203 (260)
..+|.-..||++|..+++.++.- .+..+.+-|.+
T Consensus 13 G~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl 46 (71)
T cd04910 13 GEVGYDLEILELLQRFKVSIIAK--DTNANTITHYL 46 (71)
T ss_pred CChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEE
Confidence 34678999999999999999988 44555555555
No 202
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=24.98 E-value=77 Score=30.47 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=31.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCC
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGG 197 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~ 197 (260)
.|+|.|++|-|+.-+|++.|-.-++++-...|-..|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~~ 38 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCCe
Confidence 6899999999999999999999999988888744443
No 203
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=23.60 E-value=4.7e+02 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=35.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEc
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWV 208 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~ 208 (260)
.+-+...++||.+.+|...|-+.++.|-..++... ++. ....++++
T Consensus 150 ~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~--Ai~vl~vD 197 (208)
T TIGR00719 150 AILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNI--ALLTIEID 197 (208)
T ss_pred EEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCE--EEEEEEeC
Confidence 33445589999999999999999999999998865 354 44445555
No 204
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=23.31 E-value=2.9e+02 Score=23.20 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=46.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
.+.+.-.+.||.|..+...+...|+.+-+..+.....-...-+.+.+. |. +...+.|...|..+++-.
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~-g~--~~~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS-GD--EQVLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc-CC--cchHHHHHHHHHhhccce
Confidence 345555799999999999999999999998887665443444444443 21 234566777777776644
No 205
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=23.26 E-value=2.3e+02 Score=22.57 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 177 TRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 177 l~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
-..++++|++++..++...++.....+.+.-..| -.-.++..+.+++...|+.
T Consensus 3 ~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 3 EPLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTT
T ss_pred ccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHcc
Confidence 3567899999999999999877555555443323 2334556777888888876
No 206
>PRK11020 hypothetical protein; Provisional
Probab=22.28 E-value=1.4e+02 Score=23.50 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=37.6
Q ss_pred HHHHHHHHhHHHHHhhcCCCCccccccHHHHHHHHHHHHHHHHHHHHHh
Q 024930 66 RRRQRINSHLSTLRTLLPNTIKTDKASLLAEVVHHVKELRSQATDVAER 114 (260)
Q Consensus 66 ~RR~~in~~~~~Lr~lvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 114 (260)
.-=+++|++++.++.=++.....+.+.++..--+-|..|..+++.|...
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788999999888777766677778888888888888888877644
No 207
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=21.89 E-value=3.8e+02 Score=21.29 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHhcCCeEEEeEEE-eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 171 GLNRELTRAISLVRARAVRAEMT-TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 171 glL~~Il~aLe~L~L~Vv~a~vs-t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
.=+-.++++|++.|++|+...-. ..+.--+.-+++.-. .++..|.++|+.+|+
T Consensus 68 ~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~------gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGV------GDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEec------CCHHHHHHHHHHHHh
Confidence 45678999999999999988433 333333333444433 366888888888876
No 208
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=21.58 E-value=2.7e+02 Score=18.93 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHhcCCeEEEeEEEee
Q 024930 169 RPGLNRELTRAISLVRARAVRAEMTTV 195 (260)
Q Consensus 169 r~glL~~Il~aLe~L~L~Vv~a~vst~ 195 (260)
.+|++.+++++|.+.++++.-...+..
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCC
Confidence 679999999999999999977665554
No 209
>PRK14631 hypothetical protein; Provisional
Probab=21.52 E-value=4.3e+02 Score=22.23 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=35.7
Q ss_pred HHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc-----------------cCCCCcccHHHHHHHHHHHHHh
Q 024930 176 LTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV-----------------GGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 176 Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~-----------------~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
+-.+++++|++++...+..-++.....+.+.-. ++.-.-.++..+.++|..+|+.
T Consensus 14 i~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~ 85 (174)
T PRK14631 14 IAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDV 85 (174)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcc
Confidence 334568899999999999876544333333321 1111234567889999999984
No 210
>PRK14623 hypothetical protein; Provisional
Probab=21.32 E-value=3.8e+02 Score=20.72 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 024930 94 LAEVVHHVKELRSQATDVAERDWN 117 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~~ 117 (260)
+.+-..-.+.+|++.++++++...
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~ 26 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDT 26 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667788899999998888763
No 211
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=21.04 E-value=3.1e+02 Score=19.99 Aligned_cols=57 Identities=5% Similarity=0.064 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCC--eEEEeEEEeeCCE--EEEEEEEEEc-------cCC------CCcccHHHHHHHHHHHHHh
Q 024930 174 RELTRAISLVRA--RAVRAEMTTVGGR--TKTVVVIEWV-------GGG------GGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 174 ~~Il~aLe~L~L--~Vv~a~vst~g~~--~~~~~~vk~~-------~g~------~~~~~~~~LkeAL~~vl~~ 230 (260)
.+|=++|+++|+ +|.++.++...+. -.+.|+.... .|. ..-.+.++|++.|.+++.+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~~~ 78 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKE 78 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHHHH
Confidence 467788999999 8888888766665 2333332211 111 1235678999999998876
No 212
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.36 E-value=3.2e+02 Score=19.25 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=22.3
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
...+|.+.+|+++|...++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 45689999999999999999888753
Done!