Query 024930
Match_columns 260
No_of_seqs 231 out of 1341
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.2E-16 7.5E-21 116.6 6.9 61 56-116 6-67 (82)
2 4h10_B Circadian locomoter out 99.6 2.2E-15 7.5E-20 107.7 6.2 56 56-111 8-64 (71)
3 4ati_A MITF, microphthalmia-as 99.6 5.8E-15 2E-19 116.0 7.1 61 56-116 27-91 (118)
4 1a0a_A BHLH, protein (phosphat 99.5 6.9E-16 2.4E-20 108.2 1.5 52 57-108 3-61 (63)
5 1hlo_A Protein (transcription 99.5 8E-15 2.7E-19 107.6 6.6 61 56-116 12-74 (80)
6 1nkp_B MAX protein, MYC proto- 99.5 1E-14 3.4E-19 107.8 6.6 59 57-115 3-63 (83)
7 1an4_A Protein (upstream stimu 99.5 1.7E-15 5.8E-20 106.9 2.2 52 57-108 6-63 (65)
8 4h10_A ARYL hydrocarbon recept 99.5 3.1E-15 1.1E-19 107.7 3.1 52 55-106 8-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 2.1E-14 7E-19 107.2 6.6 59 56-114 6-67 (88)
10 1nlw_A MAD protein, MAX dimeri 99.5 9.8E-14 3.4E-18 101.7 7.2 59 57-115 2-63 (80)
11 3u5v_A Protein MAX, transcript 99.4 2E-13 6.7E-18 99.1 4.5 55 57-111 6-64 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 6.5E-12 2.2E-16 89.1 4.0 53 56-108 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.5E-11 5.1E-16 85.2 5.3 53 57-109 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 5.5E-10 1.9E-14 102.7 5.0 52 56-107 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2E-09 6.8E-14 100.0 5.2 53 55-107 12-68 (387)
16 4ath_A MITF, microphthalmia-as 98.8 7.8E-09 2.7E-13 75.4 5.8 48 67-114 3-54 (83)
17 2lfh_A DNA-binding protein inh 98.8 1.2E-09 4.1E-14 76.7 1.1 45 62-106 20-67 (68)
18 4aya_A DNA-binding protein inh 98.3 1.4E-06 4.8E-11 65.3 6.2 47 64-110 33-82 (97)
19 1zpv_A ACT domain protein; str 97.9 0.00019 6.6E-09 52.2 11.2 73 158-234 4-76 (91)
20 1u8s_A Glycine cleavage system 97.5 0.00084 2.9E-08 55.8 10.4 70 159-233 6-75 (192)
21 2nyi_A Unknown protein; protei 97.3 0.00052 1.8E-08 57.5 7.1 51 158-208 4-54 (195)
22 2nyi_A Unknown protein; protei 97.2 0.0017 5.9E-08 54.3 9.5 74 157-235 91-170 (195)
23 2ko1_A CTR148A, GTP pyrophosph 97.0 0.0035 1.2E-07 44.7 8.5 51 158-208 4-54 (88)
24 1u8s_A Glycine cleavage system 96.9 0.0041 1.4E-07 51.5 9.1 75 157-235 91-173 (192)
25 3o1l_A Formyltetrahydrofolate 96.5 0.014 4.8E-07 52.3 10.1 93 157-255 20-114 (302)
26 3n0v_A Formyltetrahydrofolate 96.4 0.015 5.2E-07 51.7 9.6 90 159-255 8-99 (286)
27 3obi_A Formyltetrahydrofolate 96.2 0.021 7.2E-07 50.8 9.3 92 158-255 5-98 (288)
28 3p96_A Phosphoserine phosphata 96.0 0.026 8.8E-07 51.9 9.1 75 158-235 11-85 (415)
29 3lou_A Formyltetrahydrofolate 95.9 0.029 1E-06 49.9 8.8 94 158-255 9-104 (292)
30 3nrb_A Formyltetrahydrofolate 95.6 0.038 1.3E-06 49.1 8.3 90 158-255 6-97 (287)
31 2jhe_A Transcription regulator 94.9 0.068 2.3E-06 42.6 7.1 37 161-198 2-38 (190)
32 2f1f_A Acetolactate synthase i 93.7 0.13 4.5E-06 41.9 6.2 64 160-228 4-69 (164)
33 2pc6_A Probable acetolactate s 93.3 0.25 8.4E-06 40.3 7.3 65 160-229 5-71 (165)
34 1y7p_A Hypothetical protein AF 92.3 0.27 9.1E-06 42.0 6.4 61 159-226 4-69 (223)
35 2fgc_A Acetolactate synthase, 89.8 1 3.4E-05 37.6 7.4 65 160-229 30-96 (193)
36 3luy_A Probable chorismate mut 85.1 6 0.0002 35.6 10.2 60 168-231 217-277 (329)
37 2qmx_A Prephenate dehydratase; 82.8 3.6 0.00012 36.2 7.6 64 162-229 203-267 (283)
38 3mwb_A Prephenate dehydratase; 82.2 4.5 0.00015 36.1 8.1 69 159-231 201-271 (313)
39 2qmw_A PDT, prephenate dehydra 76.2 6.7 0.00023 34.2 7.1 58 167-229 197-255 (267)
40 2f06_A Conserved hypothetical 65.1 26 0.0009 26.6 7.7 42 162-203 75-116 (144)
41 1rwu_A Hypothetical UPF0250 pr 57.1 42 0.0014 25.0 7.2 62 159-225 36-100 (109)
42 2f06_A Conserved hypothetical 55.2 41 0.0014 25.4 7.2 36 160-195 7-42 (144)
43 3p96_A Phosphoserine phosphata 54.4 45 0.0015 29.9 8.4 73 158-235 100-173 (415)
44 1phz_A Protein (phenylalanine 53.2 18 0.00062 33.6 5.4 66 160-230 35-101 (429)
45 2dt9_A Aspartokinase; protein- 49.8 72 0.0024 24.9 8.0 50 157-206 14-67 (167)
46 2re1_A Aspartokinase, alpha an 48.3 47 0.0016 26.0 6.6 42 157-200 101-145 (167)
47 2re1_A Aspartokinase, alpha an 46.6 73 0.0025 24.9 7.5 37 157-193 23-60 (167)
48 2dtj_A Aspartokinase; protein- 41.6 76 0.0026 25.1 7.0 37 157-193 13-50 (178)
49 2l5g_A GPS2 protein, G protein 38.2 38 0.0013 20.4 3.3 29 88-116 4-32 (38)
50 2dtj_A Aspartokinase; protein- 38.0 1.2E+02 0.0042 23.9 7.7 35 157-191 93-130 (178)
51 2jee_A YIIU; FTSZ, septum, coi 37.9 33 0.0011 24.4 3.6 23 94-116 15-37 (81)
52 3s1t_A Aspartokinase; ACT doma 35.9 1.5E+02 0.0051 23.6 7.9 49 158-206 15-67 (181)
53 2wt7_A Proto-oncogene protein 35.2 95 0.0033 20.4 5.5 15 65-79 2-16 (63)
54 3muj_A Transcription factor CO 33.9 45 0.0016 26.0 4.1 35 70-104 95-133 (138)
55 1xkm_B Distinctin chain B; por 32.1 48 0.0016 17.8 2.8 19 92-110 4-22 (26)
56 2dnr_A Synaptojanin-1; RRM dom 32.1 88 0.003 22.5 5.2 37 157-194 7-49 (91)
57 1pd7_B MAD1; PAH2, SIN3, eukar 32.0 56 0.0019 18.0 3.1 20 88-107 2-21 (26)
58 1ib8_A Conserved protein SP14. 30.7 71 0.0024 25.3 5.0 49 179-229 21-69 (164)
59 1ybx_A Conserved hypothetical 27.4 2.2E+02 0.0075 22.2 8.8 24 94-117 43-66 (143)
60 2dt9_A Aspartokinase; protein- 27.2 1.4E+02 0.0046 23.2 6.1 35 157-191 93-130 (167)
61 3ab4_A Aspartokinase; aspartat 26.7 2.8E+02 0.0096 25.0 9.0 36 157-192 262-298 (421)
62 4go7_X Aspartokinase; transfer 25.6 2.2E+02 0.0074 23.2 7.3 51 157-207 33-87 (200)
63 3he4_B Synzip5; heterodimeric 25.6 94 0.0032 18.8 3.6 20 94-113 5-24 (46)
64 1p3q_Q VPS9P, vacuolar protein 23.6 65 0.0022 21.0 2.9 25 62-86 3-27 (54)
65 3s1t_A Aspartokinase; ACT doma 23.0 2.8E+02 0.0096 21.9 7.7 35 157-191 94-131 (181)
66 3fx7_A Putative uncharacterize 22.9 1.9E+02 0.0065 20.9 5.6 22 94-115 65-86 (94)
67 1ygy_A PGDH, D-3-phosphoglycer 22.5 2.7E+02 0.0093 26.0 8.2 50 159-208 454-503 (529)
68 3dhx_A Methionine import ATP-b 21.9 2.3E+02 0.0077 20.3 8.2 49 159-208 23-72 (106)
69 1dh3_A Transcription factor CR 21.1 73 0.0025 20.6 2.8 17 99-115 22-38 (55)
70 1sc6_A PGDH, D-3-phosphoglycer 20.9 2.7E+02 0.0093 25.1 7.6 44 160-203 332-375 (404)
71 3mtj_A Homoserine dehydrogenas 20.6 3E+02 0.01 25.3 8.0 33 158-190 358-390 (444)
72 2er8_A Regulatory protein Leu3 20.3 77 0.0026 20.8 2.9 20 98-117 48-67 (72)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=2.2e-16 Score=116.56 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=57.0
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC-CccccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT-IKTDKASLLAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
.+.+|+.+||+||++||++|.+|++|||+. .|+||++||.+||+||++|+.+++.|+.+..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999997 8999999999999999999999999987654
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=107.67 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=51.7
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC-CccccccHHHHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT-IKTDKASLLAEVVHHVKELRSQATDV 111 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l 111 (260)
.+.+|+.+||+||++||++|.+|++|||.. .|+||++||.+||+||++||.++.=|
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 467899999999999999999999999975 79999999999999999999987654
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.55 E-value=5.8e-15 Score=116.02 Aligned_cols=61 Identities=26% Similarity=0.462 Sum_probs=53.1
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
.+.+|+.+||+||++||++|.+|++|||.+ .|++|++||.+||+||++||.+++.|++...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999987 3788999999999999999999999987643
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.55 E-value=6.9e-16 Score=108.20 Aligned_cols=52 Identities=29% Similarity=0.478 Sum_probs=47.1
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC-------CccccccHHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-------IKTDKASLLAEVVHHVKELRSQA 108 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~-------~k~dk~sil~~ai~yi~~L~~~~ 108 (260)
+.+|+.+||+||++||..|.+|++|||++ .+.+||+||++||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999965 46679999999999999999765
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=8e-15 Score=107.65 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=57.0
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC--CccccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT--IKTDKASLLAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
.+..|+..||+||..||+.|..|+++||.. .|++|++||..||+||++|+++++.|+.+..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999976 6999999999999999999999999988765
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.53 E-value=1e-14 Score=107.83 Aligned_cols=59 Identities=22% Similarity=0.380 Sum_probs=54.5
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC--CccccccHHHHHHHHHHHHHHHHHHHHHhh
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT--IKTDKASLLAEVVHHVKELRSQATDVAERD 115 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l~~~~ 115 (260)
+..|+..||+||+.||+.|..|+++||.. .|++|++||.+||+||++|+.+++.|+.+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999974 899999999999999999999988887654
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.7e-15 Score=106.93 Aligned_cols=52 Identities=31% Similarity=0.576 Sum_probs=47.9
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCCC------ccccccHHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNTI------KTDKASLLAEVVHHVKELRSQA 108 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~~------k~dk~sil~~ai~yi~~L~~~~ 108 (260)
+.+|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999999999999874 7899999999999999999764
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=3.1e-15 Score=107.71 Aligned_cols=52 Identities=38% Similarity=0.648 Sum_probs=48.3
Q ss_pred hhhhhccHHHHHHHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHHHH
Q 024930 55 DACKSHKEAERRRRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKELRS 106 (260)
Q Consensus 55 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~ 106 (260)
..+.+|+.+||+||++||+.|.+|++|||.+ .|+||++||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999976 799999999999999999875
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=2.1e-14 Score=107.25 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=53.7
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHHHHHHHHh
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQATDVAER 114 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 114 (260)
.+..|+..||+||+.||++|..|+.+||.. .|++|++||.+||+||++|+.+.+.+..+
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999975 69999999999999999999998877654
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=9.8e-14 Score=101.72 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=53.9
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHHHHHHHHhh
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQATDVAERD 115 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~~l~~~~ 115 (260)
+..|+..||+||..||++|..|+++||.. .|++|++||.+|++||+.|+++.+.|+.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999965 788999999999999999999999887664
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=2e-13 Score=99.07 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=47.8
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC---Ccc-ccccHHHHHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT---IKT-DKASLLAEVVHHVKELRSQATDV 111 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~-dk~sil~~ai~yi~~L~~~~~~l 111 (260)
+..|+..||+||+.||+.|.+|+.+||.+ .|. +|++||..||+||+.|+++++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999953 444 68889999999999999999987
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.22 E-value=6.5e-12 Score=89.08 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=48.8
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcCCC--CccccccHHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLPNT--IKTDKASLLAEVVHHVKELRSQA 108 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~~~ 108 (260)
.+..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||.+|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999964 78999999999999999999864
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.20 E-value=1.5e-11 Score=85.18 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=48.4
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHHHH
Q 024930 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQAT 109 (260)
Q Consensus 57 ~~~h~~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~ 109 (260)
+..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||.+|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999999999999965 689999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.93 E-value=5.5e-10 Score=102.67 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=42.5
Q ss_pred hhhhccHHHHHHHHHHHHhHHHHHhhcC-CCCccccccHHHHHHHHHHHHHHH
Q 024930 56 ACKSHKEAERRRRQRINSHLSTLRTLLP-NTIKTDKASLLAEVVHHVKELRSQ 107 (260)
Q Consensus 56 ~~~~h~~~Er~RR~~in~~~~~Lr~lvP-~~~k~dk~sil~~ai~yi~~L~~~ 107 (260)
.+.+|+.+||+||++||..|.+|++||| +..|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999 558999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.84 E-value=2e-09 Score=99.98 Aligned_cols=53 Identities=38% Similarity=0.630 Sum_probs=48.6
Q ss_pred hhhhhccHHHHHHHHHHHHhHHHHHhhcC----CCCccccccHHHHHHHHHHHHHHH
Q 024930 55 DACKSHKEAERRRRQRINSHLSTLRTLLP----NTIKTDKASLLAEVVHHVKELRSQ 107 (260)
Q Consensus 55 ~~~~~h~~~Er~RR~~in~~~~~Lr~lvP----~~~k~dk~sil~~ai~yi~~L~~~ 107 (260)
..+.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 35678999999999999999999999999 568999999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.79 E-value=7.8e-09 Score=75.36 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=42.9
Q ss_pred HHHHHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHHHHHHHHHHHh
Q 024930 67 RRQRINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKELRSQATDVAER 114 (260)
Q Consensus 67 RR~~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 114 (260)
-|..||++|.+|..|||.+ .|.+|++||..||+||++||+..+.+.++
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999965 57899999999999999999988877654
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=76.69 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHH
Q 024930 62 EAERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRS 106 (260)
Q Consensus 62 ~~Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~ 106 (260)
..||+|+..||+.|..||.+||.. .|++|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 347889999999999999999965 789999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.27 E-value=1.4e-06 Score=65.33 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHHHHHhhcCCC---CccccccHHHHHHHHHHHHHHHHHH
Q 024930 64 ERRRRQRINSHLSTLRTLLPNT---IKTDKASLLAEVVHHVKELRSQATD 110 (260)
Q Consensus 64 Er~RR~~in~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~~ 110 (260)
||.|=..+|+.|..||.+||.. .|++|..+|..||+||..|++-++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778889999999999999964 7899999999999999999987754
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.88 E-value=0.00019 Score=52.15 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=61.0
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASG 234 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~ 234 (260)
..+.|.|.|.++||++.+|..+|.+.|..|++.+....++.+...+.+++.+ ....+.|.++|..+-......
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~----~~~l~~l~~~L~~~~~~~~~~ 76 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE----KQDFTYLRNEFEAFGQTLNVK 76 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS----CCCHHHHHHHHHHHHHHHTEE
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC----CCCHHHHHHHHHHHHHHcCCE
Confidence 4588999999999999999999999999999999988888887777777763 246788999998876654443
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.46 E-value=0.00084 Score=55.79 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=58.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhcc
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRAS 233 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~ 233 (260)
.+.|.|.|+++||++..|..+|.+.|+.|+.+++.+..|.+.-.+.+... ....+.|+++|..+..+...
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~~~~~~~~ 75 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-----PSNITRVETTLPLLGQQHDL 75 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-----HHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-----CCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999888888777777653 23567888888887755433
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.29 E-value=0.00052 Score=57.49 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=45.0
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
..+.|.|.|.++||++..|..+|.++|+.|+.+.+.+..|.+.-.+.+...
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 358899999999999999999999999999999999888877777777654
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.20 E-value=0.0017 Score=54.27 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=57.8
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC------CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG------GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g------~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
...+.|.|.|.++||++..|..+|.++|+.|+.+...+.+ +.++-.+.+.... ... +.|+++|..+..+
T Consensus 91 ~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~----~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 91 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF----PLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG----GGH-HHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC----Ccc-HHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999998876 4555445454431 335 7888888888777
Q ss_pred hccCC
Q 024930 231 RASGY 235 (260)
Q Consensus 231 ~~~~~ 235 (260)
....|
T Consensus 166 l~~di 170 (195)
T 2nyi_A 166 FGVDI 170 (195)
T ss_dssp HTCEE
T ss_pred cCeEE
Confidence 65544
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.04 E-value=0.0035 Score=44.74 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=42.1
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
..+.|.|.+.++||+|.+|..+|.+.|+.|.+.++...++.....|.+++.
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 457888999999999999999999999999999998877744445555554
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.92 E-value=0.0041 Score=51.51 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=57.3
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--------CEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--------GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--------~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
...+.|.|.|.++||++..|.++|.+.|+.|..+...+.+ +.++-.+.+... ...+.+.|+++|..+.
T Consensus 91 ~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~----~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 91 AYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD----SGCNLMQLQEEFDALC 166 (192)
T ss_dssp SEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC----TTSCHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC----CCCCHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999888765 233333333332 2346789999999888
Q ss_pred HhhccCC
Q 024930 229 ENRASGY 235 (260)
Q Consensus 229 ~~~~~~~ 235 (260)
.+....|
T Consensus 167 ~~~~~~~ 173 (192)
T 1u8s_A 167 TALDVQG 173 (192)
T ss_dssp HHHTCEE
T ss_pred HHhCceE
Confidence 7765544
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.52 E-value=0.014 Score=52.30 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=66.6
Q ss_pred CceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee--CCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccC
Q 024930 157 QQLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV--GGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASG 234 (260)
Q Consensus 157 ~~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~--g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~ 234 (260)
...+.+.+.|.+++|+...|...|.+.|+.|+.++.+.. .|.++-.+.+....+ ..+.+.|+++|..+-.+....
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~---~~~~~~L~~~l~~la~~l~m~ 96 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL---PFDLDGFREAFTPIAEEFSMD 96 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS---SSCHHHHHHHHHHHHHHHTCE
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC---CCCHHHHHHHHHHHHHHhCCe
Confidence 456889999999999999999999999999999988865 576655554544322 256789999998877766666
Q ss_pred CCCCCCCCCCccceecccccc
Q 024930 235 YGLGRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 235 ~~~~~~~~~~kr~r~~~~~~~ 255 (260)
|..- ...++.|+..+.|+
T Consensus 97 ~~l~---~~~~~~ri~vl~Sg 114 (302)
T 3o1l_A 97 WRIT---DSAQKKRVVLMASR 114 (302)
T ss_dssp EEEE---ETTSCCEEEEEECS
T ss_pred eeec---ccCCCcEEEEEEeC
Confidence 6321 12234556544443
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.41 E-value=0.015 Score=51.68 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=64.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCCC
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGYG 236 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~~ 236 (260)
.+.+.+.|.+++|+...|...|.+.|+.|+.++.. ...|.++-.+.+.... ..+.+.|+++|..+-.+....|.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~----~~~~~~L~~~f~~la~~l~m~~~ 83 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD----DFDEAGFRAGLAERSEAFGMAFE 83 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS----SCCHHHHHHHHHHHHGGGTCEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC----CCCHHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999999877 3456665544444431 35678899999877665555553
Q ss_pred CCCCCCCCccceecccccc
Q 024930 237 LGRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 237 ~~~~~~~~kr~r~~~~~~~ 255 (260)
. ....++.|+..+.|+
T Consensus 84 l---~~~~~~~ri~vl~Sg 99 (286)
T 3n0v_A 84 L---TAPNHRPKVVIMVSK 99 (286)
T ss_dssp E---ECTTCCCEEEEEESS
T ss_pred e---ecCCCCcEEEEEEeC
Confidence 2 123345566555544
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.20 E-value=0.021 Score=50.78 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=66.8
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
..+.+.+.|.+++|+...|...|.+.|+.|+.++.. ...|.++-.+.+.+..+ ..+.+.|+++|..+-.+....|
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~---~~~~~~L~~~f~~la~~~~m~~ 81 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK---VIPLASLRTGFGVIAAKFTMGW 81 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC---CCCHHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC---CCCHHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999999875 34677666666665432 2567899999988766665555
Q ss_pred CCCCCCCCCccceecccccc
Q 024930 236 GLGRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 236 ~~~~~~~~~kr~r~~~~~~~ 255 (260)
.. ....++.|+.-+.|+
T Consensus 82 ~l---~~~~~~~ri~vl~Sg 98 (288)
T 3obi_A 82 HM---RDRETRRKVMLLVSQ 98 (288)
T ss_dssp EE---EETTSCEEEEEEECS
T ss_pred Ee---eccCCCcEEEEEEcC
Confidence 32 123345566555554
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.95 E-value=0.026 Score=51.93 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=60.8
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
..+.|.+.|.+|||+...|...|.++|..|+.++-+..+|.+.-.+.+.+... ..+.+.|+++|..+-......|
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD---VADGPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH---HHTSHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC---cCCHHHHHHHHHHHHHHcCeEE
Confidence 45889999999999999999999999999999999999998877777766522 1245788888887766655544
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.90 E-value=0.029 Score=49.94 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=64.4
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
..+.+.+.|.+++|+...|...|.+.|+.|+.++.. ...|.++-.+.+...... ...+.+.|+++|..+-.+....|
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~~~~~~L~~~f~~la~~~~m~~ 87 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDA-DALRVDALRREFEPIAERFRMQW 87 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHHHHHTCEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcc-cCCCHHHHHHHHHHHHHhcCcEE
Confidence 357899999999999999999999999999999887 345666544444433000 12467889999988777666666
Q ss_pred CCCCCCCCCccceecccccc
Q 024930 236 GLGRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 236 ~~~~~~~~~kr~r~~~~~~~ 255 (260)
..- ...++.|+.-+.|+
T Consensus 88 ~l~---~~~~~~ri~vl~Sg 104 (292)
T 3lou_A 88 AIH---DVAARPKVLIMVSK 104 (292)
T ss_dssp EEE---ETTSCCEEEEEECS
T ss_pred Eee---ccCCCCEEEEEEcC
Confidence 321 12334566555544
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=95.59 E-value=0.038 Score=49.07 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=59.9
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEE--eeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRAEMT--TVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vs--t~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
..+.+.+.|.+++|+...|...|.+.|+.|+.++.. ...|.++-.+.+... ..+...|+++|..+-.+....|
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-----~~~~~~L~~~f~~la~~~~m~~ 80 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP-----VAGVNDFNSAFGKVVEKYNAEW 80 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-----C---CHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC-----CCCHHHHHHHHHHHHHHcCCee
Confidence 357899999999999999999999999999999875 345665544444332 1233478888876666555554
Q ss_pred CCCCCCCCCccceecccccc
Q 024930 236 GLGRIGSGIKRARVGGLVDE 255 (260)
Q Consensus 236 ~~~~~~~~~kr~r~~~~~~~ 255 (260)
.. ....++.|+.-+.|+
T Consensus 81 ~l---~~~~~~~ri~vl~Sg 97 (287)
T 3nrb_A 81 WF---RPRTDRKKVVIMVSK 97 (287)
T ss_dssp EE---EETTCCCEEEEEECS
T ss_pred Ee---eccCCCcEEEEEEeC
Confidence 32 122345566555544
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.92 E-value=0.068 Score=42.59 Aligned_cols=37 Identities=35% Similarity=0.564 Sum_probs=33.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE
Q 024930 161 KATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR 198 (260)
Q Consensus 161 ~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~ 198 (260)
.|+|.|.+|+|+|.+|+++|.+.++.+..+++.+. |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 58899999999999999999999999999999766 44
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=93.66 E-value=0.13 Score=41.92 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=47.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEEEEccCCCCcccHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIV 228 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl 228 (260)
..|+|..+++||+|.+|..+|...|..|.+.++.... +....+|.+. +. ....+.|..+|.++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC--HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc--HHHHHHHHHHHcCCC
Confidence 5678889999999999999999999999999987554 5555555554 21 344566666666553
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=93.26 E-value=0.25 Score=40.31 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=48.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC--CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG--GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g--~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
-.|+|..+++||+|.+|...|...|..|.+.++.... +....+|.+... ....+.|..+|.++++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d-----~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-----DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-----HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc-----HHHHHHHHHHhcCCCC
Confidence 5678889999999999999999999999999887554 666666666522 3445666666666543
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=92.35 E-value=0.27 Score=41.95 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=42.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeC-----CEEEEEEEEEEccCCCCcccHHHHHHHHHH
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVG-----GRTKTVVVIEWVGGGGGNEEMAVLQRALKD 226 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g-----~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~ 226 (260)
.+.|.|.+.+++|+|.+|+.+|.+.+..|.+.+..... +... +.+++.+ . ..+.|-+.|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~--I~IEV~d----~-~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKAL--IYFEIEG----G-DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEE--EEEEECS----S-CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEE--EEEEECC----C-CHHHHHHHHhC
Confidence 47889999999999999999999999999999998764 3333 2377762 2 55566555553
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=89.80 E-value=1 Score=37.63 Aligned_cols=65 Identities=11% Similarity=0.242 Sum_probs=48.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee-C-CEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV-G-GRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~-g-~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
-.|.|..+++||.|.+|...|...|+.|.+..+... + +....+|++... +...+.|..+|.++++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-----e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-----DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-----TTHHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-----HHHHHHHHHHhcCcCc
Confidence 567778889999999999999999999999988644 3 556666666432 3345667777766543
No 36
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=85.09 E-value=6 Score=35.55 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE-EEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 168 DRPGLNRELTRAISLVRARAVRAEMTTVGGRTK-TVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 168 ~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~-~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
++||.|.++|..|...|+...+...-...+..+ +.|.+.+. |. ..-..+++||.++-...
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~---~~d~~v~~AL~~L~~~~ 277 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD-AA---PWEERFRDALVEIAEHG 277 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES-SC---TTSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe-CC---cCCHHHHHHHHHHHHhC
Confidence 689999999999999999999999988877765 78888886 43 23367888888875544
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=82.84 E-value=3.6 Score=36.21 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=48.7
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
|-+...++||.|.++|..|...|+.+.+...-...+. .-+.|.+.+. |. .+-..+++||.++-.
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e-g~---~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI-GH---REDQNVHNALENLRE 267 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE-SC---TTSHHHHHHHHHHHT
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe-cC---CCcHHHHHHHHHHHH
Confidence 3333468899999999999999999999998877655 4488888887 43 233667888877644
No 38
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=82.22 E-value=4.5 Score=36.12 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=52.0
Q ss_pred eEEEEEEcc-CCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE-EEEEEEEccCCCCcccHHHHHHHHHHHHHhh
Q 024930 159 LLKATLCCE-DRPGLNRELTRAISLVRARAVRAEMTTVGGRTK-TVVVIEWVGGGGGNEEMAVLQRALKDIVENR 231 (260)
Q Consensus 159 ~v~I~I~c~-~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~-~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~ 231 (260)
...|-+.-. ++||.|.++|..|...|+.+.+...-...+..+ +.|.+.+. |. .+-..+++||.++-...
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~---~~d~~v~~aL~~L~~~~ 271 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD-GH---ATDSRVADALAGLHRIS 271 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE-SC---TTSHHHHHHHHHHHHHC
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe-CC---CCcHHHHHHHHHHHHhc
Confidence 344445554 899999999999999999999999887765554 88888886 43 23367888888765543
No 39
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=76.20 E-value=6.7 Score=34.17 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=46.3
Q ss_pred cCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE-EEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 167 EDRPGLNRELTRAISLVRARAVRAEMTTVGGRTK-TVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 167 ~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~-~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
.++||.|.++|..|...|+.+.+...-...+..+ +.|.+.+. .. +-..+++||.++-.
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~----~d~~v~~aL~~L~~ 255 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA----ITTDIKKVIAILET 255 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC----SCHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC----CcHHHHHHHHHHHH
Confidence 6899999999999999999999999887766544 88888887 42 22567778777644
No 40
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=65.12 E-value=26 Score=26.56 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=30.2
Q ss_pred EEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEE
Q 024930 162 ATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVV 203 (260)
Q Consensus 162 I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~ 203 (260)
|-+.-.++||.+.+++++|.+.|+.|...-.+..+++....|
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 334457999999999999999999997654432455444443
No 41
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=57.10 E-value=42 Score=25.03 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=47.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhc---CCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHH
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLV---RARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALK 225 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L---~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~ 225 (260)
.+.++|.....+++...|.++++.. ..++ ..+-+..|..+-.++.+.+. ..+....|-++|.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~----S~eQv~aiY~~L~ 100 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT----HIEQVETLYEELG 100 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS----SHHHHHHHHHHHS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC----CHHHHHHHHHHHh
Confidence 4888888888999999999999997 6666 66778888877777777665 3456666666654
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=55.23 E-value=41 Score=25.40 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=29.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEee
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTV 195 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~ 195 (260)
-.|.|.-+++||.+.+|+.+|.+.|+.|....+...
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 456667789999999999999999999988766533
No 43
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=54.36 E-value=45 Score=29.90 Aligned_cols=73 Identities=5% Similarity=-0.079 Sum_probs=52.7
Q ss_pred ceEEEEEEccC-CCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHHhhccCC
Q 024930 158 QLLKATLCCED-RPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVENRASGY 235 (260)
Q Consensus 158 ~~v~I~I~c~~-r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~~~~~~ 235 (260)
....+.+...+ +++++.+|...|.+.++.+......+....+...|.+.+. ..+...++++|.++...-.-.+
T Consensus 100 ~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~-----~~~~~~l~~~l~~l~~~~~vD~ 173 (415)
T 3p96_A 100 STHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP-----PGADEALRTALNRVSSEEHVDV 173 (415)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC-----TTCHHHHHHHHHHHHHHHTCEE
T ss_pred CcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC-----CCCHHHHHHHHHHHhhhcCcCc
Confidence 34666777776 8899999999999999999888766644444444555443 2456888999988877655543
No 44
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=53.23 E-value=18 Score=33.63 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=47.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCE-EEEEEEEEEccCCCCcccHHHHHHHHHHHHHh
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGR-TKTVVVIEWVGGGGGNEEMAVLQRALKDIVEN 230 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~-~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~~ 230 (260)
..|-+...+++|-|.++|..|...|+.+.+...-...+. --+.|.+.+. . .+-..+++||.++-..
T Consensus 35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h----~~d~~v~~AL~eL~~~ 101 (429)
T 1phz_A 35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K----RTKPVLGSIIKSLRND 101 (429)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G----GGHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e----CCCHHHHHHHHHHHhh
Confidence 334444567899999999999999999999988777543 4477778776 3 1235577777776554
No 45
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=49.82 E-value=72 Score=24.87 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=33.6
Q ss_pred CceEEEEEEc-cCCCChHHHHHHHHHhcCCeEEEeEEEee---CCEEEEEEEEE
Q 024930 157 QQLLKATLCC-EDRPGLNRELTRAISLVRARAVRAEMTTV---GGRTKTVVVIE 206 (260)
Q Consensus 157 ~~~v~I~I~c-~~r~glL~~Il~aLe~L~L~Vv~a~vst~---g~~~~~~~~vk 206 (260)
.....|.|.. .+++|.+.+|+++|.+.++.|.-...+.. .|..-.+|.+.
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3456666665 67899999999999999888876544322 23444445443
No 46
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=48.26 E-value=47 Score=26.03 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=31.9
Q ss_pred CceEEEEEEccC---CCChHHHHHHHHHhcCCeEEEeEEEeeCCEEE
Q 024930 157 QQLLKATLCCED---RPGLNRELTRAISLVRARAVRAEMTTVGGRTK 200 (260)
Q Consensus 157 ~~~v~I~I~c~~---r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~ 200 (260)
.....|.|.... .||.+.+++++|.+.|+.|.... +....+.
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is 145 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVS 145 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEE
Confidence 446778887754 89999999999999999998854 4444433
No 47
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=46.57 E-value=73 Score=24.86 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=29.7
Q ss_pred CceEEEEEEc-cCCCChHHHHHHHHHhcCCeEEEeEEE
Q 024930 157 QQLLKATLCC-EDRPGLNRELTRAISLVRARAVRAEMT 193 (260)
Q Consensus 157 ~~~v~I~I~c-~~r~glL~~Il~aLe~L~L~Vv~a~vs 193 (260)
.....|.|.. .+++|.+.+|+++|.+.|+.|.....+
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 3457777774 789999999999999999888776543
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=41.56 E-value=76 Score=25.09 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.7
Q ss_pred CceEEEEEE-ccCCCChHHHHHHHHHhcCCeEEEeEEE
Q 024930 157 QQLLKATLC-CEDRPGLNRELTRAISLVRARAVRAEMT 193 (260)
Q Consensus 157 ~~~v~I~I~-c~~r~glL~~Il~aLe~L~L~Vv~a~vs 193 (260)
.+...|.|. -.+++|.+.+|+++|.+.++.|--...+
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 345667774 4789999999999999999666555433
No 49
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.22 E-value=38 Score=20.36 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=24.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 024930 88 TDKASLLAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 88 ~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
+.-+..|+++-+.|..|+.+++.|+++..
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556799999999999999999988753
No 50
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=37.95 E-value=1.2e+02 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=28.7
Q ss_pred CceEEEEEEcc---CCCChHHHHHHHHHhcCCeEEEeE
Q 024930 157 QQLLKATLCCE---DRPGLNRELTRAISLVRARAVRAE 191 (260)
Q Consensus 157 ~~~v~I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~ 191 (260)
....+|.|... ..||.+.+++++|.+.++.|.-..
T Consensus 93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 45677777764 678999999999999999997754
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.95 E-value=33 Score=24.35 Aligned_cols=23 Identities=9% Similarity=0.305 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 024930 94 LAEVVHHVKELRSQATDVAERDW 116 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~ 116 (260)
+..||+-|.-||.++++|++++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999987754
No 52
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=35.89 E-value=1.5e+02 Score=23.56 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.2
Q ss_pred ceEEEEEEc-cCCCChHHHHHHHHHhcCCeEEEeEEEee---CCEEEEEEEEE
Q 024930 158 QLLKATLCC-EDRPGLNRELTRAISLVRARAVRAEMTTV---GGRTKTVVVIE 206 (260)
Q Consensus 158 ~~v~I~I~c-~~r~glL~~Il~aLe~L~L~Vv~a~vst~---g~~~~~~~~vk 206 (260)
+...|.|.. .+.+|.+.+|+++|.+.++.|.-..-+.. +|..-.+|.+.
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 445666654 68899999999999999888876643222 45444555443
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.17 E-value=95 Score=20.43 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=6.1
Q ss_pred HHHHHHHHHhHHHHH
Q 024930 65 RRRRQRINSHLSTLR 79 (260)
Q Consensus 65 r~RR~~in~~~~~Lr 79 (260)
|++|.+...+..+.+
T Consensus 2 kr~rrrerNR~AA~r 16 (63)
T 2wt7_A 2 KRRIRRERNKMAAAK 16 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHH
Confidence 333334444444443
No 54
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=33.94 E-value=45 Score=26.01 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=29.6
Q ss_pred HHHHhHHHHHhhcCCC----CccccccHHHHHHHHHHHH
Q 024930 70 RINSHLSTLRTLLPNT----IKTDKASLLAEVVHHVKEL 104 (260)
Q Consensus 70 ~in~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L 104 (260)
.|.-.|..|..++|.- .+.-|--||..|.+++.-|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4788999999999954 6778999999999988765
No 55
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.15 E-value=48 Score=17.77 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 024930 92 SLLAEVVHHVKELRSQATD 110 (260)
Q Consensus 92 sil~~ai~yi~~L~~~~~~ 110 (260)
+-|-+|-.|+.+|..+++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4477889999999887653
No 56
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.08 E-value=88 Score=22.51 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=27.9
Q ss_pred CceEEEEEEcc------CCCChHHHHHHHHHhcCCeEEEeEEEe
Q 024930 157 QQLLKATLCCE------DRPGLNRELTRAISLVRARAVRAEMTT 194 (260)
Q Consensus 157 ~~~v~I~I~c~------~r~glL~~Il~aLe~L~L~Vv~a~vst 194 (260)
+.+|+|.++.. --+.++..|++.|..+| +|+.+++..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~ 49 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE 49 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 45677887542 12358999999999999 899988765
No 57
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=31.97 E-value=56 Score=18.00 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=15.1
Q ss_pred cccccHHHHHHHHHHHHHHH
Q 024930 88 TDKASLLAEVVHHVKELRSQ 107 (260)
Q Consensus 88 ~dk~sil~~ai~yi~~L~~~ 107 (260)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45567899999999876653
No 58
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=30.67 E-value=71 Score=25.34 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=35.8
Q ss_pred HHHhcCCeEEEeEEEeeCCEEEEEEEEEEccCCCCcccHHHHHHHHHHHHH
Q 024930 179 AISLVRARAVRAEMTTVGGRTKTVVVIEWVGGGGGNEEMAVLQRALKDIVE 229 (260)
Q Consensus 179 aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~~g~~~~~~~~~LkeAL~~vl~ 229 (260)
+++. |++++...+..-++.....+.+.-.+|. .-.++..+.++|..+|+
T Consensus 21 ~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~gi-~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 21 VIEA-PFELVDIEYGKIGSDMILSIFVDKPEGI-TLNDTADLTEMISPVLD 69 (164)
T ss_dssp HHCS-SSEEEEEEEEEETTEEEEEEEEECSSCC-CHHHHHHHHHHHGGGTT
T ss_pred HHcC-CcEEEEEEEEecCCCcEEEEEEECCCCC-CHHHHHHHHHHHHHHhc
Confidence 3456 9999999999887765555555444332 34567899999999999
No 59
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=27.36 E-value=2.2e+02 Score=22.15 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 024930 94 LAEVVHHVKELRSQATDVAERDWN 117 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~~~ 117 (260)
+.+-.+-.+++|++.+++|++...
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~ 66 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKE 66 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667778899999999988764
No 60
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=27.19 E-value=1.4e+02 Score=23.18 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=27.5
Q ss_pred CceEEEEEEcc---CCCChHHHHHHHHHhcCCeEEEeE
Q 024930 157 QQLLKATLCCE---DRPGLNRELTRAISLVRARAVRAE 191 (260)
Q Consensus 157 ~~~v~I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~ 191 (260)
.....|.|... ..||.+.+++++|.+.|+.|.-..
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 44566777765 489999999999999999994443
No 61
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=26.73 E-value=2.8e+02 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=29.6
Q ss_pred CceEEEEEE-ccCCCChHHHHHHHHHhcCCeEEEeEE
Q 024930 157 QQLLKATLC-CEDRPGLNRELTRAISLVRARAVRAEM 192 (260)
Q Consensus 157 ~~~v~I~I~-c~~r~glL~~Il~aLe~L~L~Vv~a~v 192 (260)
.....|.|. ..+++|.+.+|+++|.+.++.|.....
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q 298 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 298 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc
Confidence 456777887 478899999999999999998877643
No 62
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=25.57 E-value=2.2e+02 Score=23.23 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=34.4
Q ss_pred CceEEEEEE-ccCCCChHHHHHHHHHhcCCeEEEe--EEEee-CCEEEEEEEEEE
Q 024930 157 QQLLKATLC-CEDRPGLNRELTRAISLVRARAVRA--EMTTV-GGRTKTVVVIEW 207 (260)
Q Consensus 157 ~~~v~I~I~-c~~r~glL~~Il~aLe~L~L~Vv~a--~vst~-g~~~~~~~~vk~ 207 (260)
.+..+|.|. .++.||.+.+|+.+|.+.++.|--. +++.. ++..-.+|.+..
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 455777775 4799999999999999988766554 44433 345555555543
No 63
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.55 E-value=94 Score=18.77 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024930 94 LAEVVHHVKELRSQATDVAE 113 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~ 113 (260)
+.+--+||++|+++..+|+.
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 45667899999998887754
No 64
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.59 E-value=65 Score=20.98 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCCC
Q 024930 62 EAERRRRQRINSHLSTLRTLLPNTI 86 (260)
Q Consensus 62 ~~Er~RR~~in~~~~~Lr~lvP~~~ 86 (260)
.++|-+|...++-+.+|+.+.|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4678889999999999999999853
No 65
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=22.97 E-value=2.8e+02 Score=21.86 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=28.7
Q ss_pred CceEEEEEEcc---CCCChHHHHHHHHHhcCCeEEEeE
Q 024930 157 QQLLKATLCCE---DRPGLNRELTRAISLVRARAVRAE 191 (260)
Q Consensus 157 ~~~v~I~I~c~---~r~glL~~Il~aLe~L~L~Vv~a~ 191 (260)
.....|.+... ..||++.+++++|.+.++.|.-.+
T Consensus 94 ~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 94 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 45567777654 689999999999999999888776
No 66
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.94 E-value=1.9e+02 Score=20.93 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024930 94 LAEVVHHVKELRSQATDVAERD 115 (260)
Q Consensus 94 l~~ai~yi~~L~~~~~~l~~~~ 115 (260)
.+.|=+||.+|.++++-|++.+
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 4578899999999999998754
No 67
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=22.48 E-value=2.7e+02 Score=25.96 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=37.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 159 LLKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 159 ~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
...+-+.-.++||.+.+|...|-+.++.|-..++......-...+.+.++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd 503 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD 503 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC
Confidence 34555667899999999999999999999999987653222344555665
No 68
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.85 E-value=2.3e+02 Score=20.34 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=35.7
Q ss_pred eEEEEEEccC-CCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEEEEEEc
Q 024930 159 LLKATLCCED-RPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVVVIEWV 208 (260)
Q Consensus 159 ~v~I~I~c~~-r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~~vk~~ 208 (260)
.+.+...-+. ..-+++++.+.+ ...+.|+.++|..++|..+=.+.+++.
T Consensus 23 lvrL~f~g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~ 72 (106)
T 3dhx_A 23 MLRLEFTGQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMH 72 (106)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEcCCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEe
Confidence 4555555443 234666665555 366889999999999999999999997
No 69
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.12 E-value=73 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024930 99 HHVKELRSQATDVAERD 115 (260)
Q Consensus 99 ~yi~~L~~~~~~l~~~~ 115 (260)
.||..|+.++..|+.++
T Consensus 22 ~~~~~LE~~v~~L~~eN 38 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQN 38 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777777777666554
No 70
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=20.89 E-value=2.7e+02 Score=25.12 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=36.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhcCCeEEEeEEEeeCCEEEEEE
Q 024930 160 LKATLCCEDRPGLNRELTRAISLVRARAVRAEMTTVGGRTKTVV 203 (260)
Q Consensus 160 v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a~vst~g~~~~~~~ 203 (260)
-.+-+.-.++||.+.+|-..|-+.++.|..-.+.+.|+..+.++
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vi 375 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVI 375 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEE
Confidence 44556677999999999999999999999999988877655554
No 71
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=20.61 E-value=3e+02 Score=25.28 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=28.8
Q ss_pred ceEEEEEEccCCCChHHHHHHHHHhcCCeEEEe
Q 024930 158 QLLKATLCCEDRPGLNRELTRAISLVRARAVRA 190 (260)
Q Consensus 158 ~~v~I~I~c~~r~glL~~Il~aLe~L~L~Vv~a 190 (260)
..+++++.+.++||.|.+|..+|.+.++.|-+.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~ 390 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAM 390 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEE
Confidence 458999999999999999999999999988665
No 72
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.30 E-value=77 Score=20.84 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 024930 98 VHHVKELRSQATDVAERDWN 117 (260)
Q Consensus 98 i~yi~~L~~~~~~l~~~~~~ 117 (260)
-.||..|+++++.|+.....
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999877654
Done!