BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024931
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3
PE=2 SV=1
Length = 316
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
AS GD +P+Y+ CV+ C + C G + F S +P Y+ W C
Sbjct: 16 ASQGDKEPVYRDCVKHCVRANCTGARLR---GFQS-----------TQPPYMALTGWTCR 61
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
DCRY CM G + G ++HGKWPF R +EP + S LN G
Sbjct: 62 DDCRYQCMWTTVGLYQAEGYSIPQFHGKWPFARFLCFEEPASALASLLN------GLACL 115
Query: 142 FILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVAL 201
+LL Y+ + Y+ T + ++++N+WFWS VFH+RD LTEK+D A A+
Sbjct: 116 LMLLRYRSAVPCQSPMYHTITA----FSLVSLNAWFWSTVFHTRDTYLTEKMDYFCASAV 171
Query: 202 LGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHG 248
+ ++ L +R +R A MV LI T+H+ YL F D+G
Sbjct: 172 ILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYG 218
>sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3
PE=2 SV=2
Length = 320
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
S GD +P+Y+ CV QCE+ C G H F S ++P+Y+ W C
Sbjct: 20 GSQGDREPVYRDCVLQCEEQNCSGGA-LNH--FRS-----------RQPIYMSLAGWTCR 65
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
DC+Y CM G + G K ++HGKWPF R QEP + S LN G S
Sbjct: 66 DDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLN------GLASL 119
Query: 142 FILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVAL 201
+L Y+ + Y+ + +++N+WFWS VFH+RD +LTEK+D A +
Sbjct: 120 VMLCRYRTFVPASSPMYHTCVA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTV 175
Query: 202 LGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHG 248
+ + L +R ++ A A L+ +T H+ YL+ + D+G
Sbjct: 176 ILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYG 222
>sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3
PE=2 SV=1
Length = 320
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 24/231 (10%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
S GD +P+Y+ CV +CE+ C GD +H F S ++P+Y+ W C
Sbjct: 20 GSQGDREPVYRDCVLRCEERNCSGDA-LKH--FRS-----------RQPIYMSLAGWTCR 65
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
DC+Y CM G + G + ++HGKWPF R IQEP + S LN G S
Sbjct: 66 DDCKYECMWFTVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASL 119
Query: 142 FILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVAL 201
+L Y+ + Y+ + +++N+WFWS VFH+RD +LTEK+D A A+
Sbjct: 120 VMLCRYRASVPASSPMYHTCMA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASAV 175
Query: 202 LGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGNSFL 252
+ + L +R ++ + A L+ +T HI YL+ D+G + +
Sbjct: 176 ILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGHISYLSLVHFDYGYNMM 226
>sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis
GN=pgap3 PE=2 SV=1
Length = 316
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
AS GD +P+Y+ CV CE+ C G + +D + ++PLY+R W C
Sbjct: 15 ASRGDREPVYRDCVTLCERNNCTGSRL-------TDFRA-------EQPLYMRVTGWTCL 60
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
DCRY CM K G + ++HGKWPF R QEP + S LN G S
Sbjct: 61 DDCRYQCMWYTVSLYLKEGHEVPQFHGKWPFSRFLFFQEPASALASFLN------GVASL 114
Query: 142 FILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVAL 201
+LL Y+ + + Y + ++++N+WFWS +FH+RD LTEK+D A ++
Sbjct: 115 LMLLRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFHTRDTALTEKMDYFCASSV 170
Query: 202 LGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHG 248
+ + L +R F ++ + A L+ H+ YL + D+
Sbjct: 171 ILHSIYLCCMRTFGLQYPSIANGFGAFLVLLFACHVSYLTLGRFDYS 217
>sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3
PE=2 SV=1
Length = 317
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
AS GD +P+Y+ CV C++ C G F+ +F + Q+PLY+R W C
Sbjct: 15 ASRGDREPVYRDCVTVCDQNNCTG---FRLRDFRA-----------QQPLYMRLTGWTCL 60
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
DCRY CM K G + ++HGKWPF R QEP + S LN G S
Sbjct: 61 DDCRYKCMWYTVSLYLKEGHEVPQFHGKWPFSRFLFFQEPASALASFLN------GVASL 114
Query: 142 FILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVAL 201
+L Y+ + + Y + ++++N+WFWS +FH+RD LTEK+D A ++
Sbjct: 115 LMLFRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFHTRDTALTEKMDYFCASSV 170
Query: 202 LGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHG 248
+ + L +R F ++ + A L+ HI YL + D+
Sbjct: 171 ILHSIYLCCMRTFGLQYPSIANAFGAFLVLLFACHISYLTLGRFDYS 217
>sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster
GN=CG3271 PE=1 SV=2
Length = 326
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 23/255 (9%)
Query: 1 MAHSHLIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKP 60
M+ L A+ LL+ + A AS+GD + C + CE+T C S+DG
Sbjct: 1 MSSRSLSAIVLLLGALVTACLASNGDRTQFFHNCRQNCERTNC-----------SADGLE 49
Query: 61 ID--GPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGI 118
I + Q+ ++ R QW C+ +C+Y CM + G +++GKWPF R+ G+
Sbjct: 50 IQEQAVKFYQQSVFDRLFQWSCADECQYGCMWRTVFAFFERGWPIPQFYGKWPFLRLLGM 109
Query: 119 QEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFW 178
QEP +V S LN + +L ++ +RPD Y L HI+ + ++N W W
Sbjct: 110 QEPASVIFSCLNFVVHLR------LLRKFRREVRPDSPCYM----LTHIFAVTSLNGWIW 159
Query: 179 SAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHIL 238
SA+FH+RD LTE LD + A +++ + + ++R R ++ +++ +
Sbjct: 160 SAIFHTRDFPLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGVITLAFLSYYINYFA 219
Query: 239 YLNFYKLDHGNSFLL 253
YL+ + ++ + ++
Sbjct: 220 YLSVGRFNYAFNMMV 234
>sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3
PE=2 SV=1
Length = 319
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 24/227 (10%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
S GD +P+Y+ CV +CE+ C G +H F S ++P+Y+ W C
Sbjct: 20 GSQGDREPVYRDCVLRCEERNCSGGA-LKH--FRS-----------RQPIYMSLAGWTCR 65
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
DC+Y CM G + G K ++HGKWPF R QEP + S LN G S
Sbjct: 66 DDCKYECMWVTVGLYLQEGQKVPQFHGKWPFSRFLCFQEPASAVASFLN------GLASL 119
Query: 142 FILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVAL 201
+L Y+ + Y + +++N+WFWS VFH+RD +LTEK+D A +
Sbjct: 120 VMLCRYRTSVPASSPMYPTCVA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTV 175
Query: 202 LGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHG 248
+ + L +R ++ A A L+ +T H+ YL+ D+G
Sbjct: 176 ILHSIYLCCVRTVGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDYG 222
>sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus
GN=PGAP3 PE=2 SV=1
Length = 320
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 24/232 (10%)
Query: 21 YASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDC 80
+ S GD +P+Y+ CV +CE+ C GD +H F S +P+Y+ W C
Sbjct: 19 WGSQGDREPVYRDCVLRCEERNCSGDA-LKH--FRS-----------LQPIYMSLAGWTC 64
Query: 81 SSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMS 140
DC+Y CM G + G + ++HGKWPF R IQEP + S LN G S
Sbjct: 65 RDDCKYECMWITVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLAS 118
Query: 141 FFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVA 200
+L Y+ + Y+ + +++N+WFWS VFH+RD +LTEK+D A A
Sbjct: 119 LVMLCRYRASVPASSPMYHTCMA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASA 174
Query: 201 LLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGNSFL 252
++ + L +R ++ + A L+ + H YL+ + D+ + +
Sbjct: 175 VILHSIYLCCVRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRFDYSYNMM 226
>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC823.07 PE=3 SV=1
Length = 331
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 104/233 (44%), Gaps = 34/233 (14%)
Query: 22 ASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCS 81
AS GD P+Y CV +C + C G P D + PL L+ +WDC
Sbjct: 24 ASAGDLHPVYVSCVNRCIENKC-------------HGNPSDTS---KLPLDLKLFRWDCG 67
Query: 82 SDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSF 141
S+C Y C + E +YHGKW F RV+GIQE +V S LN I ++G
Sbjct: 68 SNCGYECEITAENYFAAHNLPSQQYHGKWYFIRVFGIQELFSVFFSMLNFMIHYNG---- 123
Query: 142 FILLYYKLPLR--PDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAV 199
Y + R PD+ W I G MN+W WS+VFH RD +TEKLD SA
Sbjct: 124 -----YHIMRRCIPDEHPAKRLCLSWAIVG---MNAWVWSSVFHIRDTPITEKLDYFSAG 175
Query: 200 ALLGFNFILAILRAFSVRDEAARVM----VAAPLIAFVTTHILYLNFYKLDHG 248
A + F ++ + + + IA H+ YL+FY D+G
Sbjct: 176 AFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSFYSFDYG 228
>sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PER1 PE=1 SV=1
Length = 357
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 19/242 (7%)
Query: 7 IALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQH----CNFSSDGKPID 62
+ + LL+ C L S GD + C CE + + N D + D
Sbjct: 5 VVVTLLVHCFLVT--CSPGDNLDEFIDCTYACEYNRRCPNSQINYIDPETNMFHDIEFFD 62
Query: 63 GPWYLQEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPV 122
P PLY + WDC SDC Y C R ++ ++HGKWPF RV G QE
Sbjct: 63 TP-----PLYSKLLFWDCISDCDYQCQHIITRWRIDEEEEIYQFHGKWPFLRVLGTQEFF 117
Query: 123 AVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLW-HIYGILA-MNSWFWSA 180
+ S N + G++ F ++ + R +W ++Y +A M +W S+
Sbjct: 118 STIFSIGNFIPHYKGFVKFSRIIREEGDRRRKNS---RSILIWNYLYVTVAGMLAWTASS 174
Query: 181 VFHSRDVELTEKLD--CSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHIL 238
VFH RD+ +TEKLD + L GF+ I A + + + + A+ A+ + A HIL
Sbjct: 175 VFHCRDLIITEKLDYFFAGLTVLTGFHAIFARMTSMFLYPKIAQAFTAS-VAAIFALHIL 233
Query: 239 YL 240
L
Sbjct: 234 RL 235
>sp|Q8BYY9|SPA3B_MOUSE Serine protease inhibitor A3B OS=Mus musculus GN=Serpina3b PE=2
SV=1
Length = 420
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 167 IYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE 219
+ GI + + S + HS ++++TEK A+ ++G+NF+ A L+ V+ E
Sbjct: 341 LSGITGVKNITVSEMIHSTELDMTEKGTEGDAITIVGYNFMSAKLKPVFVKFE 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,278,031
Number of Sequences: 539616
Number of extensions: 4060168
Number of successful extensions: 8931
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8895
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)