Query 024931
Match_columns 260
No_of_seqs 116 out of 220
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2970 Predicted membrane pro 100.0 2.1E-83 4.5E-88 586.0 16.5 228 8-257 6-234 (319)
2 PF04080 Per1: Per1-like ; In 100.0 7.9E-79 1.7E-83 555.2 14.3 179 68-256 2-181 (267)
3 COG5237 PER1 Predicted membran 100.0 2.4E-70 5.2E-75 491.0 14.0 214 16-255 12-231 (319)
4 PF03006 HlyIII: Haemolysin-II 88.4 2.9 6.3E-05 36.1 8.3 43 166-208 45-94 (222)
5 PF12036 DUF3522: Protein of u 81.5 18 0.00038 31.7 9.9 33 169-201 34-75 (186)
6 TIGR01065 hlyIII channel prote 79.2 20 0.00044 31.4 9.7 42 165-206 39-85 (204)
7 PF10277 Frag1: Frag1/DRAM/Sfk 58.3 1.1E+02 0.0025 25.8 12.8 90 110-206 41-132 (215)
8 PF05875 Ceramidase: Ceramidas 58.0 1.4E+02 0.0031 26.9 10.8 67 118-199 24-90 (262)
9 PF11416 Sed5p: Integral membr 51.5 7.7 0.00017 24.5 0.9 20 23-42 3-22 (29)
10 PF10709 DUF2511: Protein of u 39.0 13 0.00028 29.2 0.6 13 104-116 5-17 (87)
11 PRK10649 hypothetical protein; 35.8 90 0.002 32.0 6.2 91 165-259 14-108 (577)
12 PRK11560 phosphoethanolamine t 31.7 2.9E+02 0.0063 28.4 9.1 91 168-259 19-111 (558)
13 KOG0748 Predicted membrane pro 26.5 5.4E+02 0.012 24.1 9.7 31 179-209 98-134 (286)
14 PRK09598 lipid A phosphoethano 25.3 3.9E+02 0.0084 27.2 8.6 86 168-259 25-111 (522)
15 PRK15087 hemolysin; Provisiona 24.4 2.9E+02 0.0062 24.7 6.8 41 166-206 55-99 (219)
16 PF08333 DUF1725: Protein of u 21.6 21 0.00045 20.7 -0.7 6 105-110 2-7 (20)
No 1
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.1e-83 Score=585.98 Aligned_cols=228 Identities=43% Similarity=0.812 Sum_probs=203.5
Q ss_pred HHHHHHHHhhccccCCCCCCChhHHHHHHHhhhcCCCCCcccccccCCCCCCCCCCCCccCchhhhhhccCCCCCCCCcc
Q 024931 8 ALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYH 87 (260)
Q Consensus 8 ~~~~~~~~l~~~~~AS~GD~l~~f~~Cv~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~Y~ 87 (260)
.+++++.++ ....||+||++|+|++|+++||.++|.++.+. |+.+. ..|++.|++.|||.+||+|+
T Consensus 6 v~~ll~~c~-~~~~aS~GD~~~~y~~Cv~~Ce~~~c~~~~~~-----~~~~~--------~~~l~~r~~~wdc~s~C~Y~ 71 (319)
T KOG2970|consen 6 VKFLLLKCL-VQFEASPGDRKPGYVDCVQGCEANECSNNYID-----PQTNM--------FHPLYTRLWAWDCCSDCRYQ 71 (319)
T ss_pred hHHHHHHHH-hhhccCCCCCchhHHHHHHHHhhccCCCCcCC-----ccccc--------cchhHHHHHhcCcchhcCce
Confidence 334444444 45789999999999999999999999886432 23232 33999999999999999999
Q ss_pred ceeheehhhhhcCCCCccccccCCceecccccchHHHHHHHhHHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHH
Q 024931 88 CMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHI 167 (260)
Q Consensus 88 Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 167 (260)
||+.++.+|.++|+|++||||||||+||+||||||||+||++||++||+|+.+ +|.+.+++++.+|+ ++|++
T Consensus 72 Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l~~I 143 (319)
T KOG2970|consen 72 CMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RLWLI 143 (319)
T ss_pred eeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cchhh
Confidence 99999999999999999999999999999999999999999999999999754 55566667777776 68999
Q ss_pred HHHHHHHHHHHHhhhhccCcCccchhhhHhhHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHHHHhhhhccccCc
Q 024931 168 YGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE-AARVMVAAPLIAFVTTHILYLNFYKLD 246 (260)
Q Consensus 168 ~~~v~~~aW~~StiFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~~~l~~~-~~r~~~~~~~~~~~~~Hi~yL~~~~fD 246 (260)
|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++++++++|++||.||++++||
T Consensus 144 ~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~fd 223 (319)
T KOG2970|consen 144 YAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYNFD 223 (319)
T ss_pred HHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhheecc
Confidence 9999999999999999999999999999999999999999999999999876 778899999999999999999999999
Q ss_pred cccchhhhhcc
Q 024931 247 HGNSFLLMSLT 257 (260)
Q Consensus 247 Y~YNM~~~~~~ 257 (260)
|||||++||..
T Consensus 224 YgyNm~~~v~~ 234 (319)
T KOG2970|consen 224 YGYNMIVCVAI 234 (319)
T ss_pred cccceeeehhh
Confidence 99999999864
No 2
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=7.9e-79 Score=555.22 Aligned_cols=179 Identities=44% Similarity=0.761 Sum_probs=164.3
Q ss_pred CchhhhhhccCCCCCCCCccceeheehhhhhcCCCCccccccCCceecccccchHHHHHHHhHHHHHHhhhHHHHHHHHh
Q 024931 68 QEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYY 147 (260)
Q Consensus 68 ~~pl~l~l~~W~C~sdC~Y~Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~ 147 (260)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++||||||||+||++|+++|++|+++++ +
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~----~ 77 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFR----R 77 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHH----H
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred hCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCcCccchhhhHhhHHHHHHHHHHHHHHhccCC-chHHHHHHH
Q 024931 148 KLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVR-DEAARVMVA 226 (260)
Q Consensus 148 ~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~~~l~-~~~~r~~~~ 226 (260)
+.+.+.+.++ .|+++++||||||+||||||+||+++|||||||+|+++|++|+|++++|+++++ ++..+.+++
T Consensus 78 ~~~~~~p~~~------~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 78 QVPRNSPMYP------YYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred hccCCCCCcC------eeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4444333222 257899999999999999999999999999999999999999999999999994 455678899
Q ss_pred HHHHHHHHHHhhhhccccCccccchhhhhc
Q 024931 227 APLIAFVTTHILYLNFYKLDHGNSFLLMSL 256 (260)
Q Consensus 227 ~~~~~~~~~Hi~yL~~~~fDY~YNM~~~~~ 256 (260)
++|+++|+.||+||++++|||||||++||.
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~ 181 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDYGYNMKANVA 181 (267)
T ss_pred HHHHHHHHHHHHHccccccccHhHHHHHHH
Confidence 999999999999999999999999999985
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.4e-70 Score=491.02 Aligned_cols=214 Identities=30% Similarity=0.425 Sum_probs=185.9
Q ss_pred hhccccCCCCCCChhHHHHHHHhhhc-CCCCCcccccccCCCCCCCCCCCCccCchhhhhhccCCCCCCCCccceeheeh
Q 024931 16 TLPALYASDGDADPIYKGCVEQCEKT-GCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLAREG 94 (260)
Q Consensus 16 l~~~~~AS~GD~l~~f~~Cv~~C~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~Y~Cm~~~~~ 94 (260)
+.-.+.|||||++|||.+|+.+|++. .|..++ +|. ...|++.++++|||.|+|+|+|++..++
T Consensus 12 ~~~~vt~s~gd~~~~~~~C~~~C~en~rc~~n~--------~dt--------n~~pL~~klf~wDc~s~cgy~C~~~~~~ 75 (319)
T COG5237 12 HCFLVTCSPGDNLDEMKYCFGKCFENSRCNLNK--------TDT--------NMFPLVDKLFGWDCDSKCGYMCHLLCLK 75 (319)
T ss_pred HHheeecCCCCCcHHHHHHHHHHHHhcccCCCc--------CCc--------ccccHHHHHHcCccccccchHHHHHHHH
Confidence 33468899999999999999999966 884422 111 2568999999999999999999999999
Q ss_pred hhhhcCCCCccccccCCceecccccchHHHHHHHhHHHHHHhhhHHHHHHHHhhCCCC-CCCccchhhhhHHHHHHHHHH
Q 024931 95 EREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLR-PDKKTYYEYTGLWHIYGILAM 173 (260)
Q Consensus 95 ~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~v~~ 173 (260)
-+.+.++|+.||||||||.||+||||+||++||++|+++||.|+.++. ++.+.. +.++.+| +.++++||
T Consensus 76 ~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m~----r~i~~e~~~~R~~~------l~wv~igm 145 (319)
T COG5237 76 FTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRML----RKILRETRLGRLYY------LQWVYIGM 145 (319)
T ss_pred HhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccccceEE------eeHHHHHH
Confidence 999999999999999999999999999999999999999999998843 344433 3355454 34579999
Q ss_pred HHHHHHhhhhccCcCccchhhhHhhHHHHHHHHHHHHHHhccCCch----HHHHHHHHHHHHHHHHHhhhhccccCcccc
Q 024931 174 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE----AARVMVAAPLIAFVTTHILYLNFYKLDHGN 249 (260)
Q Consensus 174 ~aW~~StiFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~~~l~~~----~~r~~~~~~~~~~~~~Hi~yL~~~~fDY~Y 249 (260)
+||+||+|||+||+++|||+|||+|+++|++|+|++++|+..+..+ ..+...+++++++|++||.||++++|||+|
T Consensus 146 lAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i~fdY~Y 225 (319)
T COG5237 146 LAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNIEFDYVY 225 (319)
T ss_pred HHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhccceeee
Confidence 9999999999999999999999999999999999999999987643 346667899999999999999999999999
Q ss_pred chhhhh
Q 024931 250 SFLLMS 255 (260)
Q Consensus 250 NM~~~~ 255 (260)
||+.++
T Consensus 226 Nm~~n~ 231 (319)
T COG5237 226 NMISNC 231 (319)
T ss_pred hhhhcc
Confidence 999864
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=88.37 E-value=2.9 Score=36.13 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhhc-------cCcCccchhhhHhhHHHHHHHHHH
Q 024931 166 HIYGILAMNSWFWSAVFHS-------RDVELTEKLDCSSAVALLGFNFIL 208 (260)
Q Consensus 166 ~~~~~v~~~aW~~StiFH~-------RD~~~TEkLDYF~A~a~vl~~l~~ 208 (260)
.+|.+..+.-.+.||++|+ +.-.+-.|+||.+-...+..+..-
T Consensus 45 ~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p 94 (222)
T PF03006_consen 45 LIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTP 94 (222)
T ss_pred HHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhh
Confidence 4567777777899999999 345677899999887666655433
No 5
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=81.46 E-value=18 Score=31.71 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhccC-cC----cc----chhhhHhhHHH
Q 024931 169 GILAMNSWFWSAVFHSRD-VE----LT----EKLDCSSAVAL 201 (260)
Q Consensus 169 ~~v~~~aW~~StiFH~RD-~~----~T----EkLDYF~A~a~ 201 (260)
++|+..+=++|+.+|+-| .+ ++ ++|||......
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s 75 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGS 75 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHH
Confidence 678899999999999999 55 44 47888777544
No 6
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=79.21 E-value=20 Score=31.44 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccCc-----CccchhhhHhhHHHHHHHH
Q 024931 165 WHIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNF 206 (260)
Q Consensus 165 ~~~~~~v~~~aW~~StiFH~RD~-----~~TEkLDYF~A~a~vl~~l 206 (260)
..+|..-.+.--+.||+||+-+. .+-+|+||.+-..+|.-+.
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsy 85 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTY 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhh
Confidence 35677788888999999998873 1556899987766655443
No 7
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=58.31 E-value=1.1e+02 Score=25.78 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=54.4
Q ss_pred CCceecccccchHHHHHHHhHHHHHHhhhHHHHHHHHhh-C-CCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCc
Q 024931 110 WPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYK-L-PLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDV 187 (260)
Q Consensus 110 WPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~~-~-~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~ 187 (260)
||+.-=.|.++|-+-+|+++-.+.-.-..-. ..++++ . +..+..... ...+-.+.++++..+-+--++|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLLI--VYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 9999999999999999998766654332211 111222 1 111111111 122334677888888888899988887
Q ss_pred CccchhhhHhhHHHHHHHH
Q 024931 188 ELTEKLDCSSAVALLGFNF 206 (260)
Q Consensus 188 ~~TEkLDYF~A~a~vl~~l 206 (260)
+ ..-+.+|+.....+.
T Consensus 117 ~---~~H~~~a~~ff~~~~ 132 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSF 132 (215)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 7 456666654444443
No 8
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=57.99 E-value=1.4e+02 Score=26.86 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=42.5
Q ss_pred ccchHHHHHHHhHHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCcCccchhhhHh
Q 024931 118 IQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSS 197 (260)
Q Consensus 118 iQEp~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~~StiFH~RD~~~TEkLDYF~ 197 (260)
|=||.=++-++.=+++-..|+++. +++ +.+. .+ . ..+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~----~~~---~~~~-~~---~---l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLA----RRR---GLER-RF---A---LLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hhc---cccc-hh---H---HHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 568998888777777777776552 221 1111 11 1 2233334444 889999998888999999665
Q ss_pred hH
Q 024931 198 AV 199 (260)
Q Consensus 198 A~ 199 (260)
-.
T Consensus 89 Ml 90 (262)
T PF05875_consen 89 ML 90 (262)
T ss_pred HH
Confidence 54
No 9
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=51.48 E-value=7.7 Score=24.53 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCCCCChhHHHHHHHhhhcC
Q 024931 23 SDGDADPIYKGCVEQCEKTG 42 (260)
Q Consensus 23 S~GD~l~~f~~Cv~~C~~~~ 42 (260)
|+-||.-|||.||....+.+
T Consensus 3 ~IqdRT~EFqqcV~s~~k~n 22 (29)
T PF11416_consen 3 SIQDRTIEFQQCVSSYKKRN 22 (29)
T ss_dssp HHHB-HHHHHHHHHHHHHH-
T ss_pred chhHhhHHHHHHHHHHHHHH
Confidence 44589999999999998764
No 10
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=39.03 E-value=13 Score=29.21 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.4
Q ss_pred ccccccCCceecc
Q 024931 104 VKYHGKWPFRRVY 116 (260)
Q Consensus 104 ~QFhGKWPF~Rv~ 116 (260)
-||-+||||.|==
T Consensus 5 ~~fG~~Wpft~ee 17 (87)
T PF10709_consen 5 FEFGDKWPFTVEE 17 (87)
T ss_pred HHccCCCCceeee
Confidence 4788899999853
No 11
>PRK10649 hypothetical protein; Provisional
Probab=35.82 E-value=90 Score=32.00 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccCcCccchhhhHhh----HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHhhhh
Q 024931 165 WHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSA----VALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYL 240 (260)
Q Consensus 165 ~~~~~~v~~~aW~~StiFH~RD~~~TEkLDYF~A----~a~vl~~l~~~~~R~~~l~~~~~r~~~~~~~~~~~~~Hi~yL 240 (260)
|...++.=+.-|.+|+|=|. ++-.-||++- -++++..+++..+-+|..+-+..+.++.+++.+.++.-+.|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~vl~~~~l~~~~Y~ 89 (577)
T PRK10649 14 WKALGWALLFFWFFSTLLQA----IIYISGYSGTNGFRDALLFSSLWLIPVFLFPRRIRIIAAVIGVVLWAASLAALCYY 89 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556999998432 1122233322 145555565555544433222233334444444454555555
Q ss_pred ccccCccccchhhhhcccc
Q 024931 241 NFYKLDHGNSFLLMSLTCN 259 (260)
Q Consensus 241 ~~~~fDY~YNM~~~~~~~~ 259 (260)
..+.=-..++|+..++..|
T Consensus 90 ~~yg~~~~~~mi~~v~eTn 108 (577)
T PRK10649 90 VIYGQEFSQSVLFVMFETN 108 (577)
T ss_pred HHhCCccCHHHHHHHHhCC
Confidence 4444455678888887766
No 12
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=31.74 E-value=2.9e+02 Score=28.41 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhhccCcCccc-hhhhHhhHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHhhhhccccC
Q 024931 168 YGILAMNSWFWSAVFHSRDVELTE-KLDCSSAVALLGFNFILAILRAFSV-RDEAARVMVAAPLIAFVTTHILYLNFYKL 245 (260)
Q Consensus 168 ~~~v~~~aW~~StiFH~RD~~~TE-kLDYF~A~a~vl~~l~~~~~R~~~l-~~~~~r~~~~~~~~~~~~~Hi~yL~~~~f 245 (260)
|-.+..|.=+|+.++...+..-++ ++-++.+..++++.+...+...+.. .+...+. +.++++++=+.=.+++..+.-
T Consensus 19 ~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~K~-~~~~l~l~sa~~~Yf~~~ygv 97 (558)
T PRK11560 19 YIGLFLNIAVFYRRFDSYAQDFTVWKGLSAVVELAATVLVTFFLLRLLSLFGRRFWRV-LASLLVLFSAAASYYMTFFNV 97 (558)
T ss_pred HHHHHHhHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHhCCC
Confidence 444556777888888876654433 4556666666666666666665542 2222222 222222221122246666666
Q ss_pred ccccchhhhhcccc
Q 024931 246 DHGNSFLLMSLTCN 259 (260)
Q Consensus 246 DY~YNM~~~~~~~~ 259 (260)
--.+.|+-+|+..|
T Consensus 98 ~id~~Mi~Nv~~Td 111 (558)
T PRK11560 98 VIGYGIIASVMTTD 111 (558)
T ss_pred eeeHHHHHHHHhCC
Confidence 66678999988765
No 13
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=26.49 E-value=5.4e+02 Score=24.09 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=21.0
Q ss_pred HhhhhccCcC------ccchhhhHhhHHHHHHHHHHH
Q 024931 179 SAVFHSRDVE------LTEKLDCSSAVALLGFNFILA 209 (260)
Q Consensus 179 StiFH~RD~~------~TEkLDYF~A~a~vl~~l~~~ 209 (260)
|+++|+=-.- .==||||.+-.+++.-+....
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~ 134 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPI 134 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHH
Confidence 9999985544 223689998876666555443
No 14
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=25.33 E-value=3.9e+02 Score=27.16 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhhccCcCccchhhhHhhHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHhhhhccccCc
Q 024931 168 YGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSV-RDEAARVMVAAPLIAFVTTHILYLNFYKLD 246 (260)
Q Consensus 168 ~~~v~~~aW~~StiFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~~~l-~~~~~r~~~~~~~~~~~~~Hi~yL~~~~fD 246 (260)
|-.+..|.=+|+.++... +..-.+.+..++++.+...+..++.+ .+...+ .+.++++++=+.=.+++..+.-.
T Consensus 25 ~~~~~~n~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k-~~~~~l~~~~a~~~yf~~~ygv~ 98 (522)
T PRK09598 25 LNGVLYHFPLFAYVYKES-----NQVSFIAMLVVLLFCVNGLLFLLLGLLSRRLMR-LSAIVFSLLNSIAFYFINTYKVF 98 (522)
T ss_pred HHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCe
Confidence 444556777788887754 23334445566666666655555543 222222 22222222211122566666667
Q ss_pred cccchhhhhcccc
Q 024931 247 HGNSFLLMSLTCN 259 (260)
Q Consensus 247 Y~YNM~~~~~~~~ 259 (260)
.+++|.-+|+..|
T Consensus 99 id~~mi~nv~~T~ 111 (522)
T PRK09598 99 LNKSMMGNVLNTN 111 (522)
T ss_pred ecHHHHHHHHhCC
Confidence 7788999888765
No 15
>PRK15087 hemolysin; Provisional
Probab=24.37 E-value=2.9e+02 Score=24.66 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhccCcC----ccchhhhHhhHHHHHHHH
Q 024931 166 HIYGILAMNSWFWSAVFHSRDVE----LTEKLDCSSAVALLGFNF 206 (260)
Q Consensus 166 ~~~~~v~~~aW~~StiFH~RD~~----~TEkLDYF~A~a~vl~~l 206 (260)
.+|+.-.+.-...||+||+=..+ +=+|+||.+-..+|.-+.
T Consensus 55 ~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsy 99 (219)
T PRK15087 55 SLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTY 99 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhh
Confidence 46777788889999999986521 334699987765555443
No 16
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=21.58 E-value=21 Score=20.73 Aligned_cols=6 Identities=67% Similarity=1.747 Sum_probs=3.8
Q ss_pred cccccC
Q 024931 105 KYHGKW 110 (260)
Q Consensus 105 QFhGKW 110 (260)
+|.|||
T Consensus 2 ~F~~kW 7 (20)
T PF08333_consen 2 KFAGKW 7 (20)
T ss_pred chHHHH
Confidence 466666
Done!