Query 024931
Match_columns 260
No_of_seqs 116 out of 220
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 9.9 1.5E+02 0.005 18.7 1.7 16 26-41 17-32 (37)
2 2vzy_A RV0802C; transferase, G 9.7 63 0.0021 25.4 -0.0 33 89-121 183-215 (218)
3 2k8j_X P7TM2; P7 polypeptide, 9.6 30 0.001 21.0 -1.5 10 104-113 8-17 (29)
4 1mqs_B SED5P, integral membran 9.5 98 0.0033 20.9 0.9 21 22-42 6-26 (50)
5 2ra6_A Trichosurin; lipocalin, 8.1 90 0.0031 24.2 0.3 18 98-115 16-33 (166)
6 2plx_B Peptide inhibitor; heli 7.4 1.5E+02 0.0051 17.0 0.9 9 31-39 17-25 (26)
7 3ux4_A Acid-activated UREA cha 7.2 8.3E+02 0.028 20.7 6.0 28 193-220 73-103 (195)
8 2hm3_A Nematocyst outer WALL a 7.0 1.7E+02 0.0057 17.5 1.0 11 78-88 14-24 (31)
9 2yg2_A Apolipoprotein M; lipid 6.3 66 0.0023 27.1 -1.4 17 101-117 22-38 (172)
10 2cmy_B Beta trypsin, veronica 6.0 1.8E+02 0.006 17.7 0.8 12 30-41 21-32 (34)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=9.93 E-value=1.5e+02 Score=18.68 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.0
Q ss_pred CCChhHHHHHHHhhhc
Q 024931 26 DADPIYKGCVEQCEKT 41 (260)
Q Consensus 26 D~l~~f~~Cv~~C~~~ 41 (260)
|.-.+-|+|+.+|+..
T Consensus 17 dePWr~QECm~qCrrR 32 (37)
T 2l2r_A 17 DEPWRVQECVSQCRRR 32 (37)
T ss_dssp SCGGGHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHh
Confidence 6667889999999854
No 2
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=9.73 E-value=63 Score=25.42 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=22.5
Q ss_pred eeheehhhhhcCCCCccccccCCceecccccch
Q 024931 89 MLAREGEREKVGDKPVKYHGKWPFRRVYGIQEP 121 (260)
Q Consensus 89 m~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp 121 (260)
+..+.++..+.....+|..|-.|+.+++|+-||
T Consensus 183 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 215 (218)
T 2vzy_A 183 FRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEP 215 (218)
T ss_dssp EEEEHHHHHHHCCCCCEEESCGGGHHHHCC---
T ss_pred EEEcHHHhcccCCCCceEeChhHHHHHhCCCCC
Confidence 444444545555568899999999999999887
No 3
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=9.57 E-value=30 Score=21.02 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=6.8
Q ss_pred ccccccCCce
Q 024931 104 VKYHGKWPFR 113 (260)
Q Consensus 104 ~QFhGKWPF~ 113 (260)
.-++|+||+.
T Consensus 8 Y~~~g~Wpll 17 (29)
T 2k8j_X 8 YALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 4567888863
No 4
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=9.45 E-value=98 Score=20.94 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.4
Q ss_pred CCCCCCChhHHHHHHHhhhcC
Q 024931 22 ASDGDADPIYKGCVEQCEKTG 42 (260)
Q Consensus 22 AS~GD~l~~f~~Cv~~C~~~~ 42 (260)
.|.=||..||+.|++.=.+..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 466799999999999887653
No 5
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=8.08 E-value=90 Score=24.23 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=5.6
Q ss_pred hcCCCCccccccCCceec
Q 024931 98 KVGDKPVKYHGKWPFRRV 115 (260)
Q Consensus 98 ~~g~~i~QFhGKWPF~Rv 115 (260)
..+....||-|||=-+-.
T Consensus 16 ~~~fd~~~~~G~Wy~ia~ 33 (166)
T 2ra6_A 16 EKERKWEQLSRHWHTVVL 33 (166)
T ss_dssp ----------CBCEEEEE
T ss_pred ccCCCchhcceEeEEEEE
Confidence 345668899999966543
No 6
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=7.44 E-value=1.5e+02 Score=17.05 Aligned_cols=9 Identities=33% Similarity=1.239 Sum_probs=7.5
Q ss_pred HHHHHHHhh
Q 024931 31 YKGCVEQCE 39 (260)
Q Consensus 31 f~~Cv~~C~ 39 (260)
-+.|++.|+
T Consensus 17 lrrcldnce 25 (26)
T 2plx_B 17 LRRCLDNCE 25 (26)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHhccc
Confidence 578999987
No 7
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=7.24 E-value=8.3e+02 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=20.9
Q ss_pred hhhHhhHHHHHHHH---HHHHHHhccCCchH
Q 024931 193 LDCSSAVALLGFNF---ILAILRAFSVRDEA 220 (260)
Q Consensus 193 LDYF~A~a~vl~~l---~~~~~R~~~l~~~~ 220 (260)
.||++|+...+|++ |+++-|+++++.+.
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rg 103 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRP 103 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 67888877788884 56778899988654
No 8
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=6.98 E-value=1.7e+02 Score=17.50 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=5.7
Q ss_pred CCCCCCCCccc
Q 024931 78 WDCSSDCRYHC 88 (260)
Q Consensus 78 W~C~sdC~Y~C 88 (260)
-||-.||+--|
T Consensus 14 gdcypeckpgc 24 (31)
T 2hm3_A 14 GDCYPECKPGC 24 (31)
T ss_dssp GGGTTTTCHHH
T ss_pred ccccCccCCCc
Confidence 45555555444
No 9
>2yg2_A Apolipoprotein M; lipid transport, lipocalin, HDL; HET: S1P FLC; 1.70A {Homo sapiens} PDB: 2wex_A* 2wew_A* 2xkl_A
Probab=6.28 E-value=66 Score=27.08 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=13.7
Q ss_pred CCCccccccCCceeccc
Q 024931 101 DKPVKYHGKWPFRRVYG 117 (260)
Q Consensus 101 ~~i~QFhGKWPF~Rv~G 117 (260)
+.+.|+.|||-|+.-.+
T Consensus 22 e~p~~~lGkW~FvAGa~ 38 (172)
T 2yg2_A 22 EFPEVHLGQWYFIAGAA 38 (172)
T ss_dssp CHHHHTCEEEEEEEEEE
T ss_pred cCccceeeEEEEEEecc
Confidence 34679999999998754
No 10
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=5.97 E-value=1.8e+02 Score=17.72 Aligned_cols=12 Identities=33% Similarity=1.093 Sum_probs=7.3
Q ss_pred hHHHHHHHhhhc
Q 024931 30 IYKGCVEQCEKT 41 (260)
Q Consensus 30 ~f~~Cv~~C~~~ 41 (260)
--+.|+..|+++
T Consensus 21 llrrcldnceke 32 (34)
T 2cmy_B 21 LLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhc
Confidence 467899988754
Done!