Query 024931
Match_columns 260
No_of_seqs 116 out of 220
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 16:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024931.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024931hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra1 c.51.1.1 (A:533-645) T 31.8 4.7 0.00034 28.9 0.0 9 105-113 2-10 (113)
2 d1dx5i1 g.3.11.1 (I:345-387) T 15.3 22 0.0016 21.8 0.7 10 82-91 10-19 (43)
3 d1wmta_ g.3.7.2 (A:) Istx {Sco 13.3 44 0.0032 19.7 1.7 16 32-47 11-27 (41)
4 d1x5wa1 g.37.1.1 (A:8-35) Zinc 10.3 37 0.0027 18.7 0.6 9 82-90 6-14 (28)
5 d1uhaa1 g.3.1.1 (A:1-42) Lecti 9.2 44 0.0032 20.2 0.7 8 79-86 35-42 (42)
6 d1ggla_ b.60.1.2 (A:) Cellular 9.0 33 0.0024 24.9 0.0 20 103-122 1-20 (134)
7 d1n8ma_ g.3.7.2 (A:) PI4, pota 8.4 67 0.0049 18.9 1.2 17 32-48 10-27 (38)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 7.8 3.1E+02 0.022 18.3 6.5 11 116-126 12-22 (100)
9 d2a2ua_ b.60.1.1 (A:) Major ur 7.1 64 0.0047 22.5 0.9 20 96-115 5-24 (158)
10 d1gt1a_ b.60.1.1 (A:) Odorant- 5.9 68 0.0049 22.8 0.4 16 98-113 4-19 (158)
No 1
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=31.83 E-value=4.7 Score=28.87 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.2
Q ss_pred cccccCCce
Q 024931 105 KYHGKWPFR 113 (260)
Q Consensus 105 QFhGKWPF~ 113 (260)
.|.||||++
T Consensus 2 ~~~G~~P~~ 10 (113)
T d1nyra1 2 ETKGAFPTW 10 (113)
T ss_dssp HHTTCCCTT
T ss_pred CCCCCCCcc
Confidence 589999963
No 2
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.31 E-value=22 Score=21.84 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=8.1
Q ss_pred CCCCccceeh
Q 024931 82 SDCRYHCMLA 91 (260)
Q Consensus 82 sdC~Y~Cm~~ 91 (260)
++|.||||-.
T Consensus 10 ~~CE~qCqP~ 19 (43)
T d1dx5i1 10 ANCEYQCQPL 19 (43)
T ss_dssp CCCSSEEEEC
T ss_pred CCcceeeeeC
Confidence 6899999754
No 3
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=13.27 E-value=44 Score=19.69 Aligned_cols=16 Identities=44% Similarity=0.964 Sum_probs=13.1
Q ss_pred HHHHHHhhhc-CCCCCc
Q 024931 32 KGCVEQCEKT-GCVGDK 47 (260)
Q Consensus 32 ~~Cv~~C~~~-~C~~~~ 47 (260)
.||-+.||++ +|...+
T Consensus 11 sdcyepcekkyncarak 27 (41)
T d1wmta_ 11 SDCYEPCEKKYNCARAK 27 (41)
T ss_dssp HHHHHHHHHTTSCCCCE
T ss_pred ccccchHHHhhchHHHH
Confidence 5899999977 997765
No 4
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.26 E-value=37 Score=18.73 Aligned_cols=9 Identities=44% Similarity=1.176 Sum_probs=7.1
Q ss_pred CCCCcccee
Q 024931 82 SDCRYHCML 90 (260)
Q Consensus 82 sdC~Y~Cm~ 90 (260)
+||.|.|.-
T Consensus 6 ~ecsyscss 14 (28)
T d1x5wa1 6 SECSYSCSS 14 (28)
T ss_dssp SSSSCEESS
T ss_pred cccccccCc
Confidence 389999954
No 5
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=9.21 E-value=44 Score=20.20 Aligned_cols=8 Identities=50% Similarity=1.410 Sum_probs=6.5
Q ss_pred CCCCCCCc
Q 024931 79 DCSSDCRY 86 (260)
Q Consensus 79 ~C~sdC~Y 86 (260)
.|.++|+|
T Consensus 35 GCqsnC~y 42 (42)
T d1uhaa1 35 GCQSQCDY 42 (42)
T ss_dssp TCCBCTTT
T ss_pred cccccCCc
Confidence 58888887
No 6
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.01 E-value=33 Score=24.94 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=14.2
Q ss_pred CccccccCCceecccccchH
Q 024931 103 PVKYHGKWPFRRVYGIQEPV 122 (260)
Q Consensus 103 i~QFhGKWPF~Rv~GiQEp~ 122 (260)
|+||-|||-+.+-=.+-|++
T Consensus 1 p~~f~Gtwkl~~sENfd~fL 20 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNMEDYL 20 (134)
T ss_dssp CCSCCEEEEEEEEECHHHHH
T ss_pred CCCcCEEEEEEeccCHHHHH
Confidence 57999999998854444443
No 7
>d1n8ma_ g.3.7.2 (A:) PI4, potassium channel blocking toxin 4 {Scorpion (Pandinus imperator) [TaxId: 55084]}
Probab=8.35 E-value=67 Score=18.87 Aligned_cols=17 Identities=41% Similarity=1.189 Sum_probs=13.6
Q ss_pred HHHHHHhhhc-CCCCCcc
Q 024931 32 KGCVEQCEKT-GCVGDKC 48 (260)
Q Consensus 32 ~~Cv~~C~~~-~C~~~~~ 48 (260)
+||-..|+++ +|.++++
T Consensus 10 kdCy~PC~k~TGc~nakC 27 (38)
T d1n8ma_ 10 RDCYRPCQKRTGCPNAKC 27 (38)
T ss_dssp HHHHHHHHHHHSSCCEEE
T ss_pred chhcchHHHhcCCCchHH
Confidence 6899999955 9998763
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.79 E-value=3.1e+02 Score=18.25 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=8.9
Q ss_pred ccccchHHHHH
Q 024931 116 YGIQEPVAVAL 126 (260)
Q Consensus 116 ~GiQEp~SvlF 126 (260)
+|+|||+|-+.
T Consensus 12 l~fqd~as~~a 22 (100)
T d3dtub2 12 TGFQPSASPVA 22 (100)
T ss_dssp CSCCCCCSHHH
T ss_pred cCCCCCCCHHH
Confidence 79999988754
No 9
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.06 E-value=64 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=14.9
Q ss_pred hhhcCCCCccccccCCceec
Q 024931 96 REKVGDKPVKYHGKWPFRRV 115 (260)
Q Consensus 96 r~~~g~~i~QFhGKWPF~Rv 115 (260)
..+++..+.+|-|||=-+-.
T Consensus 5 ~~~~nfdl~k~~G~Wy~ia~ 24 (158)
T d2a2ua_ 5 STRGNLDVAKLNGDWFSIVV 24 (158)
T ss_dssp TTTTCCCGGGGCEECEEEEE
T ss_pred cccccCChHHcCEEeEEEEE
Confidence 34567889999999976643
No 10
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.88 E-value=68 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=12.8
Q ss_pred hcCCCCccccccCCce
Q 024931 98 KVGDKPVKYHGKWPFR 113 (260)
Q Consensus 98 ~~g~~i~QFhGKWPF~ 113 (260)
+++..+.||-|||=-+
T Consensus 4 ~~~~d~~k~~G~Wy~i 19 (158)
T d1gt1a_ 4 EAEQNLSELSGPWRTV 19 (158)
T ss_dssp CCCCCCGGGCEEEEEE
T ss_pred cccCChHHCCEEeEEE
Confidence 4567789999999766
Done!