Your job contains 1 sequence.
>024933
MDTTSLKTFNAIVPLHAHFRSRAPNFTQFKNNFSFSSPLSSFSSFRFSPICSLPERENGG
FMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTK
LKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIF
GSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK
TASDTCIDREFPFITEDIFA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024933
(260 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q3AD16 - symbol:CHY_1122 "Putative tRNA (cytidi... 349 7.7e-32 1
TIGR_CMR|CHY_1122 - symbol:CHY_1122 "RNA methyltransferas... 349 7.7e-32 1
UNIPROTKB|Q47VY7 - symbol:trmL "tRNA (cytidine(34)-2'-O)-... 325 2.7e-29 1
TIGR_CMR|BA_0547 - symbol:BA_0547 "RNA methyltransferase,... 325 2.7e-29 1
TIGR_CMR|CPS_4386 - symbol:CPS_4386 "RNA methyltransferas... 325 2.7e-29 1
UNIPROTKB|P0AGJ7 - symbol:trmL "tRNA (cytidine/uridine-2'... 323 4.4e-29 1
TIGR_CMR|GSU_1197 - symbol:GSU_1197 "RNA methyltransferas... 305 3.5e-27 1
UNIPROTKB|Q9KNN6 - symbol:trmL "tRNA (cytidine(34)-2'-O)-... 297 2.5e-26 1
TIGR_CMR|VC_2695 - symbol:VC_2695 "rRNA methylase, SpoU f... 297 2.5e-26 1
TIGR_CMR|SO_4529 - symbol:SO_4529 "RNA methyltransferase,... 283 7.6e-25 1
TIGR_CMR|CBU_1517 - symbol:CBU_1517 "RNA methyltransferas... 277 3.3e-24 1
TIGR_CMR|CJE_0983 - symbol:CJE_0983 "RNA methyltransferas... 242 1.7e-20 1
UNIPROTKB|P0AGJ2 - symbol:trmH species:83333 "Escherichia... 116 6.9e-05 1
>UNIPROTKB|Q3AD16 [details] [associations]
symbol:CHY_1122 "Putative tRNA
(cytidine(34)-2'-O)-methyltransferase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0008757
GO:GO:0008175 eggNOG:COG0219 HOGENOM:HOG000272757 KO:K03216
OMA:EAWRQNG TIGRFAMs:TIGR00185 RefSeq:YP_359968.1
ProteinModelPortal:Q3AD16 STRING:Q3AD16 GeneID:3728039
KEGG:chy:CHY_1122 PATRIC:21275384 ProtClustDB:CLSK2772354
BioCyc:CHYD246194:GJCN-1121-MONOMER Uniprot:Q3AD16
Length = 153
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 79/156 (50%), Positives = 99/156 (63%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV P+IP NTG IARTCAA+ LHLV PLGF +D LKRAGLDYW V + H +
Sbjct: 4 IVLVEPEIPYNTGNIARTCAATGSTLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYHENF 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
E R+ + EG R + +G + E+SY+ GD+L+FG ET GLP E LL+ E F
Sbjct: 64 QELREKY--PEG--RFFYLSTKGKRYYHEVSYKPGDFLVFGKETQGLPQE-LLEANKE-F 117
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T RIPM+ +R LNLS +V I VYEA RQL +
Sbjct: 118 ---TFRIPMLPQ-IRSLNLSNTVAIVVYEALRQLQF 149
>TIGR_CMR|CHY_1122 [details] [associations]
symbol:CHY_1122 "RNA methyltransferase, TrmH family, group
2" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] HAMAP:MF_01885
InterPro:IPR001537 InterPro:IPR016914 Pfam:PF00588
PIRSF:PIRSF029256 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0008757 GO:GO:0008175
eggNOG:COG0219 HOGENOM:HOG000272757 KO:K03216 OMA:EAWRQNG
TIGRFAMs:TIGR00185 RefSeq:YP_359968.1 ProteinModelPortal:Q3AD16
STRING:Q3AD16 GeneID:3728039 KEGG:chy:CHY_1122 PATRIC:21275384
ProtClustDB:CLSK2772354 BioCyc:CHYD246194:GJCN-1121-MONOMER
Uniprot:Q3AD16
Length = 153
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 79/156 (50%), Positives = 99/156 (63%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV P+IP NTG IARTCAA+ LHLV PLGF +D LKRAGLDYW V + H +
Sbjct: 4 IVLVEPEIPYNTGNIARTCAATGSTLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYHENF 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
E R+ + EG R + +G + E+SY+ GD+L+FG ET GLP E LL+ E F
Sbjct: 64 QELREKY--PEG--RFFYLSTKGKRYYHEVSYKPGDFLVFGKETQGLPQE-LLEANKE-F 117
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T RIPM+ +R LNLS +V I VYEA RQL +
Sbjct: 118 ---TFRIPMLPQ-IRSLNLSNTVAIVVYEALRQLQF 149
>UNIPROTKB|Q47VY7 [details] [associations]
symbol:trmL "tRNA (cytidine(34)-2'-O)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] [GO:0031167 "rRNA methylation"
evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537 InterPro:IPR016914
Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008649 GO:GO:0008175
eggNOG:COG0219 KO:K03216 OMA:EAWRQNG TIGRFAMs:TIGR00185
RefSeq:YP_271035.1 ProteinModelPortal:Q47VY7 SMR:Q47VY7
STRING:Q47VY7 GeneID:3519607 KEGG:cps:CPS_4386 PATRIC:21471617
HOGENOM:HOG000272756 BioCyc:CPSY167879:GI48-4395-MONOMER
Uniprot:Q47VY7
Length = 154
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 74/158 (46%), Positives = 98/158 (62%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL PQIP NTG I R CA S LHL+ PLGF +DD KL+RAGLDY + I+ H
Sbjct: 2 LDVVLFQPQIPPNTGNIIRLCANSGFRLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRH- 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
A F + F ++E KR+LA T + + + +IS+ GDYL+FGSET+GLP E E
Sbjct: 61 --ANF-NAFLEKEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEVRAQIPDE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIPM++ R +NLS + + VY+A RQL +
Sbjct: 118 N----KLRIPMLKES-RSMNLSNATAVIVYDAWRQLGF 150
>TIGR_CMR|BA_0547 [details] [associations]
symbol:BA_0547 "RNA methyltransferase, TrmH family, group
2" species:198094 "Bacillus anthracis str. Ames" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0008757 GO:GO:0008175 HOGENOM:HOG000272757 KO:K03216
OMA:EAWRQNG TIGRFAMs:TIGR00185 RefSeq:NP_843082.1
RefSeq:YP_017169.1 RefSeq:YP_026794.1 HSSP:P44868
ProteinModelPortal:Q81YT5 DNASU:1087852
EnsemblBacteria:EBBACT00000011962 EnsemblBacteria:EBBACT00000014890
EnsemblBacteria:EBBACT00000021617 GeneID:1087852 GeneID:2817158
GeneID:2847818 KEGG:ban:BA_0547 KEGG:bar:GBAA_0547 KEGG:bat:BAS0516
ProtClustDB:CLSK915854 BioCyc:BANT260799:GJAJ-576-MONOMER
BioCyc:BANT261594:GJ7F-602-MONOMER Uniprot:Q81YT5
Length = 162
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 76/164 (46%), Positives = 95/164 (57%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF Y + ++GE TK G H+ Y K + Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNKDGE--FFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E F +RIPM + VR LNLS + I +YEA RQ NY L
Sbjct: 116 -EENFDH-CLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNYPGL 156
>TIGR_CMR|CPS_4386 [details] [associations]
symbol:CPS_4386 "RNA methyltransferase, TrmH family, group
2" species:167879 "Colwellia psychrerythraea 34H" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008649
GO:GO:0008175 eggNOG:COG0219 KO:K03216 OMA:EAWRQNG
TIGRFAMs:TIGR00185 RefSeq:YP_271035.1 ProteinModelPortal:Q47VY7
SMR:Q47VY7 STRING:Q47VY7 GeneID:3519607 KEGG:cps:CPS_4386
PATRIC:21471617 HOGENOM:HOG000272756
BioCyc:CPSY167879:GI48-4395-MONOMER Uniprot:Q47VY7
Length = 154
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 74/158 (46%), Positives = 98/158 (62%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL PQIP NTG I R CA S LHL+ PLGF +DD KL+RAGLDY + I+ H
Sbjct: 2 LDVVLFQPQIPPNTGNIIRLCANSGFRLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRH- 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
A F + F ++E KR+LA T + + + +IS+ GDYL+FGSET+GLP E E
Sbjct: 61 --ANF-NAFLEKEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEVRAQIPDE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIPM++ R +NLS + + VY+A RQL +
Sbjct: 118 N----KLRIPMLKES-RSMNLSNATAVIVYDAWRQLGF 150
>UNIPROTKB|P0AGJ7 [details] [associations]
symbol:trmL "tRNA (cytidine/uridine-2'-O)-ribose
methyltransferase" species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0052665 "tRNA (uracil-2'-O-)-methyltransferase
activity" evidence=IDA] [GO:0052666 "tRNA
(cytosine-2'-O-)-methyltransferase activity" evidence=IDA]
[GO:0002131 "wobble position cytosine ribose methylation"
evidence=IMP] [GO:0002132 "wobble position uridine ribose
methylation" evidence=IMP] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 EMBL:M34333 EMBL:L13970
PIR:S47827 RefSeq:NP_418063.1 RefSeq:YP_491827.1
ProteinModelPortal:P0AGJ7 SMR:P0AGJ7 IntAct:P0AGJ7
MINT:MINT-1308881 PRIDE:P0AGJ7 EnsemblBacteria:EBESCT00000001396
EnsemblBacteria:EBESCT00000017167 GeneID:12933558 GeneID:948119
KEGG:ecj:Y75_p3568 KEGG:eco:b3606 PATRIC:32122697 EchoBASE:EB1834
EcoGene:EG11888 eggNOG:COG0219 HOGENOM:HOG000272757 KO:K03216
OMA:EAWRQNG ProtClustDB:PRK10358 BioCyc:EcoCyc:EG11888-MONOMER
BioCyc:ECOL316407:JW3581-MONOMER BioCyc:MetaCyc:EG11888-MONOMER
Genevestigator:P0AGJ7 GO:GO:0052666 GO:GO:0052665 GO:GO:0002131
GO:GO:0002132 TIGRFAMs:TIGR00185 Uniprot:P0AGJ7
Length = 157
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 73/158 (46%), Positives = 95/158 (60%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 2 LNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHH 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++R F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +E
Sbjct: 62 ---DYRA-FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 118 Q----KIRIPMVPDS-RSMNLSNAVSVVVYEAWRQLGY 150
>TIGR_CMR|GSU_1197 [details] [associations]
symbol:GSU_1197 "RNA methyltransferase, TrmH family, group
2, putative" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] HAMAP:MF_01885
InterPro:IPR001537 InterPro:IPR016914 Pfam:PF00588
PIRSF:PIRSF029256 GO:GO:0005737 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0008757 GO:GO:0008175
HOGENOM:HOG000272757 KO:K03216 OMA:EAWRQNG RefSeq:NP_952250.1
ProteinModelPortal:Q74DW8 GeneID:2688319 KEGG:gsu:GSU1197
PATRIC:22025164 ProtClustDB:CLSK828237
BioCyc:GSUL243231:GH27-1198-MONOMER Uniprot:Q74DW8
Length = 164
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 72/153 (47%), Positives = 90/153 (58%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV P+IP NTG IAR C A+ LHLVG LGF DD LKRAGLDYW V I+ W
Sbjct: 9 IVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVDIRY---W 65
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
E D RQ + R +K+ + + +R+GD+++FG ET GLP E LL E
Sbjct: 66 -ESLDQLRQAWPDARFFYTSKKAARCYVDAGFREGDFIVFGKETVGLP-EDLLRANEEH- 122
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+RIP+ VR LNLS + GI +YEA RQ
Sbjct: 123 ---CVRIPIFGK-VRSLNLSTAAGIVLYEALRQ 151
>UNIPROTKB|Q9KNN6 [details] [associations]
symbol:trmL "tRNA (cytidine(34)-2'-O)-methyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] HAMAP:MF_01885
InterPro:IPR001537 InterPro:IPR016914 Pfam:PF00588
PIRSF:PIRSF029256 GO:GO:0005737 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0008757 GO:GO:0000154 GO:GO:0008175 KO:K03216
OMA:EAWRQNG TIGRFAMs:TIGR00185 HSSP:P44868 EMBL:AE004335 PIR:D82044
RefSeq:NP_232323.1 ProteinModelPortal:Q9KNN6 SMR:Q9KNN6
DNASU:2615523 GeneID:2615523 KEGG:vch:VC2695 PATRIC:20084408
ProtClustDB:CLSK874886 Uniprot:Q9KNN6
Length = 158
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/157 (40%), Positives = 91/157 (57%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+ L P+I NTG I R CA LHL+ PLGF +++ K++RAGLDY + H +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
A F +Y +++ G RL A T + T H + +++GD L+FG ET GLP E + +E
Sbjct: 64 AAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQ- 122
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
IRIPM+ R LNLS +V I +EA RQ+ ++
Sbjct: 123 ---RIRIPMMPE-ARSLNLSNAVAIIAFEAWRQMGFD 155
>TIGR_CMR|VC_2695 [details] [associations]
symbol:VC_2695 "rRNA methylase, SpoU family" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000154 "rRNA modification"
evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537 InterPro:IPR016914
Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008757 GO:GO:0000154
GO:GO:0008175 KO:K03216 OMA:EAWRQNG TIGRFAMs:TIGR00185 HSSP:P44868
EMBL:AE004335 PIR:D82044 RefSeq:NP_232323.1
ProteinModelPortal:Q9KNN6 SMR:Q9KNN6 DNASU:2615523 GeneID:2615523
KEGG:vch:VC2695 PATRIC:20084408 ProtClustDB:CLSK874886
Uniprot:Q9KNN6
Length = 158
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/157 (40%), Positives = 91/157 (57%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+ L P+I NTG I R CA LHL+ PLGF +++ K++RAGLDY + H +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
A F +Y +++ G RL A T + T H + +++GD L+FG ET GLP E + +E
Sbjct: 64 AAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQ- 122
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
IRIPM+ R LNLS +V I +EA RQ+ ++
Sbjct: 123 ---RIRIPMMPE-ARSLNLSNAVAIIAFEAWRQMGFD 155
>TIGR_CMR|SO_4529 [details] [associations]
symbol:SO_4529 "RNA methyltransferase, TrmH family, group
2" species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008757
GO:GO:0008175 KO:K03216 OMA:EAWRQNG TIGRFAMs:TIGR00185
HOGENOM:HOG000272756 HSSP:P44868 RefSeq:NP_720048.1
ProteinModelPortal:Q8E8X2 SMR:Q8E8X2 GeneID:1172119
KEGG:son:SO_4529 PATRIC:23528727 ProtClustDB:CLSK907694
Uniprot:Q8E8X2
Length = 154
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 67/157 (42%), Positives = 89/157 (56%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+ L P+I NTG I R CA + LHL+ PLGF ++ KL+RAGLDY + H +
Sbjct: 4 IALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKNF 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
D F + KR++A T +G+ HSE+S+ K D L+FG ET GLP + +E
Sbjct: 64 ----DAFLKAMAGKRIMACTTKGSRPHSELSFAKDDVLLFGPETRGLPMSIIESIPTEQ- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+RIPM T R LNLS +V I YEA RQL +E
Sbjct: 119 ---RLRIPMAATS-RSLNLSNAVAIISYEAWRQLGFE 151
>TIGR_CMR|CBU_1517 [details] [associations]
symbol:CBU_1517 "RNA methyltransferase, TrmH family, group
2" species:227377 "Coxiella burnetii RSA 493" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
GO:GO:0003723 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008757
GO:GO:0008175 HOGENOM:HOG000272757 KO:K03216 OMA:EAWRQNG
TIGRFAMs:TIGR00185 HSSP:P44868 RefSeq:NP_820500.1
ProteinModelPortal:Q83BJ1 SMR:Q83BJ1 GeneID:1209427
KEGG:cbu:CBU_1517 PATRIC:17931801 ProtClustDB:CLSK914839
BioCyc:CBUR227377:GJ7S-1502-MONOMER Uniprot:Q83BJ1
Length = 152
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 63/156 (40%), Positives = 90/156 (57%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+ L P+IP NTG I R CA + LHL+ PLGF +D+ +L+RAGLDY + I +H +
Sbjct: 4 IALFEPEIPPNTGNIIRLCANAGASLHLIHPLGFSLDEKRLQRAGLDYREWATI-IH--Y 60
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F + F+ E R+ A T +G + ++++ YR D +FG ET GLP E
Sbjct: 61 DHF-EAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPMV T R +NL+ +V I +YEA RQ+ +
Sbjct: 119 ---QIRIPMV-TEKRSINLANTVSIILYEAWRQMGF 150
>TIGR_CMR|CJE_0983 [details] [associations]
symbol:CJE_0983 "RNA methyltransferase, TrmH family"
species:195099 "Campylobacter jejuni RM1221" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008757
GO:GO:0008175 eggNOG:COG0219 HOGENOM:HOG000272757 KO:K03216
OMA:EAWRQNG RefSeq:YP_178981.1 ProteinModelPortal:Q5HUQ4
STRING:Q5HUQ4 GeneID:3231494 KEGG:cjr:CJE0983 PATRIC:20043749
ProtClustDB:CLSK878984 BioCyc:CJEJ195099:GJC0-1003-MONOMER
Uniprot:Q5HUQ4
Length = 155
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/154 (38%), Positives = 82/154 (53%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV P+IP NTG I R C + LH+V P F + ++RAGLDYW + + W
Sbjct: 4 IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPII---W 60
Query: 141 AEFRDYFRQQEGEKRLLAF-TKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
++ + K F T + + + ++K D+L FGSE+ GLP E L+ E
Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPME-LMQLNWEN 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM ++Y R LNL+ SVGI YEA RQ
Sbjct: 120 ----AITIPM-KSYGRSLNLATSVGIISYEALRQ 148
>UNIPROTKB|P0AGJ2 [details] [associations]
symbol:trmH species:83333 "Escherichia coli K-12"
[GO:0009020 "tRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IEA;IMP] [GO:0030488 "tRNA methylation" evidence=TAS]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588
Pfam:PF12105 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
EMBL:L10328 eggNOG:COG0566 EMBL:M24503 GO:GO:0009020 PIR:JV0043
RefSeq:NP_418108.1 RefSeq:YP_491783.1 ProteinModelPortal:P0AGJ2
SMR:P0AGJ2 DIP:DIP-35977N IntAct:P0AGJ2 PRIDE:P0AGJ2
EnsemblBacteria:EBESCT00000003689 EnsemblBacteria:EBESCT00000016548
GeneID:12933575 GeneID:948161 KEGG:ecj:Y75_p3523 KEGG:eco:b3651
PATRIC:32122789 EchoBASE:EB0960 EcoGene:EG10967
HOGENOM:HOG000285175 KO:K00556 OMA:VHAVWPT ProtClustDB:PRK11081
BioCyc:EcoCyc:EG10967-MONOMER BioCyc:ECOL316407:JW3626-MONOMER
BioCyc:MetaCyc:EG10967-MONOMER Genevestigator:P0AGJ2 Uniprot:P0AGJ2
Length = 229
Score = 116 (45.9 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 46/157 (29%), Positives = 69/157 (43%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPL--GFQVDDTKLKRAGLDYWPYVVIKV 136
L V + P N I RT A A G+H V + G ++ AG + W V +K
Sbjct: 20 LTVCMEQVHKPHNVSAIIRT--ADAVGVHEVHAVWPGSRMRTMASAAAGSNSW--VQVKT 75
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
H T + + + Q G + L EI Y + ++ G E +G+ EAL
Sbjct: 76 HRTIGDAVAHLKGQ-GMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 134
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ I IPM+ V+ LN+SV+ + +YEA RQ
Sbjct: 135 QD------IIIPMIGM-VQSLNVSVASALILYEAQRQ 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 260 244 0.00098 113 3 11 22 0.41 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 609 (65 KB)
Total size of DFA: 194 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.00u 0.15s 19.15t Elapsed: 00:00:00
Total cpu time: 19.00u 0.15s 19.15t Elapsed: 00:00:00
Start: Sat May 11 08:17:35 2013 End: Sat May 11 08:17:35 2013