BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024933
(260 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa]
gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/268 (71%), Positives = 216/268 (80%), Gaps = 12/268 (4%)
Query: 1 MDTT-SLKTFNAIVPLHAHFRSRAP-----NFTQFKNNFSFSSPLSSFSSFRFSPICSLP 54
MDT+ SLKT N PL +FRSRA +Q K +F+ S PLS +SP CS
Sbjct: 1 MDTSRSLKTLNITTPLPFNFRSRASLLRPFCLSQLKKHFNPSLPLSQC----YSPFCSQS 56
Query: 55 ERENGGFMPRGVGEAVNGLSQNK-FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLG 113
R NG +P GVG+ VN +S+NK LQVVLVSPQIPGNTGCIARTCAA++ GLHLVGPLG
Sbjct: 57 GRGNGNSLPDGVGKGVNEVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLG 116
Query: 114 FQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR 173
FQVDD KLKRAGLDYWPYVV+KVH +WAEF+DYFRQQEG+KRLLAFTKRGT+THSE SYR
Sbjct: 117 FQVDDAKLKRAGLDYWPYVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYR 176
Query: 174 KGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
KGDYL+FGSETSGLPPEALLDC SE FGGG IRIPMVETYVRCLNLSVSVGIA+YEA+RQ
Sbjct: 177 KGDYLVFGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQ 236
Query: 234 LNYEQLKTASDTCID-REFPFITEDIFA 260
LNYEQL+ S+ ++ E FITEDIFA
Sbjct: 237 LNYEQLQFPSEDFVNGGEQSFITEDIFA 264
>gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera]
Length = 250
Score = 369 bits (946), Expect = e-99, Method: Compositional matrix adjust.
Identities = 184/260 (70%), Positives = 202/260 (77%), Gaps = 10/260 (3%)
Query: 1 MDTTSLKTFNAIVPLHAHFRSRAPNFTQFKNNFSFSSPLSSFSSFRFSPICSLPERENGG 60
MD+TSLKT NAI P H FR+R F F L RF PICSL +R +
Sbjct: 1 MDSTSLKTLNAIAPFH--FRTRVSLFRPFF--------LHQVHRNRFYPICSLSKRGSDS 50
Query: 61 FMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTK 120
+P G GE V +S N+ LQVVLVSPQIPGNTG IARTCAASA GLHL+ PLGFQVDD K
Sbjct: 51 SLPNGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAK 110
Query: 121 LKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIF 180
LKRAGLDYWPYVV+KVH +WAEFR+YFRQQEGEKRLLAFTKRGT+ HS+ SYRKGD+LIF
Sbjct: 111 LKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIF 170
Query: 181 GSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
GSET GLPPEALLDC SE GGGTIRIPMVETYVRCLNLSVSVGIA+YEA+RQLNYEQL+
Sbjct: 171 GSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQ 230
Query: 241 TASDTCIDREFPFITEDIFA 260
SD D F+TEDIFA
Sbjct: 231 FPSDPPTDSSKSFLTEDIFA 250
>gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis]
gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis]
Length = 234
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/217 (79%), Positives = 190/217 (87%), Gaps = 1/217 (0%)
Query: 44 SFRFSPICSLPERENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASA 103
SFRF + + + ENG +P GVGEAV+G+S+NK LQVVLVSPQIPGNTGCIARTCAASA
Sbjct: 19 SFRFY-LVGVADNENGNSLPHGVGEAVSGVSRNKLLQVVLVSPQIPGNTGCIARTCAASA 77
Query: 104 CGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRG 163
GLHLVGPLGFQVD TKLKRAGLDYWPYVV+KVH +W EF+DYFRQQEG+KRLLAFTKRG
Sbjct: 78 VGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHESWTEFQDYFRQQEGDKRLLAFTKRG 137
Query: 164 TSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSV 223
T+THSE YRKGDYLIFGSETSGLPPEAL DC +E FGGGTIRIPM+ETYVRCLNLSVSV
Sbjct: 138 TATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSV 197
Query: 224 GIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260
GIA+YEA+RQLNYEQLK S++ D E FI EDIFA
Sbjct: 198 GIALYEASRQLNYEQLKFPSESWTDNEQSFIIEDIFA 234
>gi|358248530|ref|NP_001239897.1| uncharacterized protein LOC100813874 [Glycine max]
gi|255638690|gb|ACU19650.1| unknown [Glycine max]
Length = 260
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 204/269 (75%), Gaps = 18/269 (6%)
Query: 1 MDTTSLKTFNAIVPLHAHFRSRAPNFTQFKNNFSFSSPLSSFSSFRFSPICSLPERENG- 59
MD T+ K+ N +P +P +F P + SS RF CSL NG
Sbjct: 1 MDITAFKSLN--IPFPTFPSKFSPFRPFSFFHFK---PFRTPSSPRFISHCSL----NGS 51
Query: 60 -------GFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPL 112
G +PRGVGEAVN S +K LQVVLVSPQIPGNTGCIARTCAASA GLHLVGPL
Sbjct: 52 AEITSKEGTLPRGVGEAVNEASSSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPL 111
Query: 113 GFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY 172
GFQVDDTKLKRAGLDYWPYVV+K+H +W +F +YFRQQEGEKRLLAFTKRGT HSE SY
Sbjct: 112 GFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFHNYFRQQEGEKRLLAFTKRGTKIHSEFSY 171
Query: 173 RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAAR 232
RKGDYLIFGSETSGLPPEALLDC +E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEA+R
Sbjct: 172 RKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASR 231
Query: 233 QLNYEQLKTASDTCID-REFPFITEDIFA 260
QLNYE L+ S++CID E FI EDIFA
Sbjct: 232 QLNYESLQVPSESCIDTTEESFIAEDIFA 260
>gi|388494462|gb|AFK35297.1| unknown [Lotus japonicus]
Length = 259
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 175/263 (66%), Positives = 203/263 (77%), Gaps = 7/263 (2%)
Query: 1 MDTTSLKTFNAIVPLHAHFRSRAPNFTQFKNNFSFSSPLSSFSSFRFSPICSL---PERE 57
MD T LK+ N P FRS+ F + F P++ FS R CSL E
Sbjct: 1 MDITGLKSLNMGNPFR--FRSKVSLFRPLFTSLHFK-PITHFSP-RLCSFCSLNGSAETS 56
Query: 58 NGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVD 117
G +P+GVG AV S ++ LQVVLVSPQIPGNTGCIARTCAASA GLHLVGPLG++VD
Sbjct: 57 KEGSLPQGVGGAVKEASHSRILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVD 116
Query: 118 DTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY 177
DTKLKRAGLDYWPYVV+K+H++W +FRDYFRQQEGEKRLLAFTKRGT HSE SY+KGDY
Sbjct: 117 DTKLKRAGLDYWPYVVVKIHNSWEDFRDYFRQQEGEKRLLAFTKRGTKIHSEFSYKKGDY 176
Query: 178 LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
L+FG+ET+GLPPEALLDC ++ FGGGT++IPMVETYVRCLNLSVSVGIA+YEA+RQLNYE
Sbjct: 177 LLFGAETTGLPPEALLDCKTKPFGGGTLKIPMVETYVRCLNLSVSVGIALYEASRQLNYE 236
Query: 238 QLKTASDTCIDREFPFITEDIFA 260
Q + S+TCI E ITEDI A
Sbjct: 237 QFQIPSETCIPTEETLITEDILA 259
>gi|449436275|ref|XP_004135918.1| PREDICTED: putative tRNA (cytidine(34)-2'-O)-methyltransferase-like
[Cucumis sativus]
gi|449489068|ref|XP_004158205.1| PREDICTED: putative tRNA (cytidine(34)-2'-O)-methyltransferase-like
[Cucumis sativus]
Length = 268
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 188/213 (88%), Gaps = 1/213 (0%)
Query: 49 PICSLPER-ENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLH 107
P CS +R E G +P GVGEAVNG+S K LQVVLVSP IPGNTG IARTCAASA GLH
Sbjct: 56 PFCSSSDRVEGSGSLPTGVGEAVNGVSHPKLLQVVLVSPLIPGNTGSIARTCAASAVGLH 115
Query: 108 LVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTH 167
LVGPLGF+VDDTKLKRAGLDYWPYVV+K+H+TWA+F++YF++QEGEKRLLAFTKRGT+ H
Sbjct: 116 LVGPLGFKVDDTKLKRAGLDYWPYVVVKIHNTWADFQEYFKKQEGEKRLLAFTKRGTTHH 175
Query: 168 SEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAV 227
S+ SY++GDYL+FGSET+GLPPEAL DC ++ FGGGT+RIPMVETYVRCLNLSVSVGIA+
Sbjct: 176 SDFSYKRGDYLLFGSETTGLPPEALEDCKNQPFGGGTLRIPMVETYVRCLNLSVSVGIAI 235
Query: 228 YEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260
YEA+RQLNYEQL+ +S++C + E ITED+FA
Sbjct: 236 YEASRQLNYEQLQVSSESCTNNEQSIITEDVFA 268
>gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 260
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/236 (68%), Positives = 193/236 (81%), Gaps = 5/236 (2%)
Query: 25 NFTQFKNNFSFSSPLSSFSSFRFSPICSLPERENGGFMPRGVGEAVNGLSQNKFLQVVLV 84
+ T K S S ++SFSS SP+C E + G +PRG GE V +++K LQVVLV
Sbjct: 30 SLTHLKRKLSLS--ITSFSSKIHSPLC---ESDKGNPLPRGAGEGVKEDARSKLLQVVLV 84
Query: 85 SPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFR 144
SPQIPGNTGCIARTCAASA GLHLVGPLGFQVDD ++KRAGLDYWP+VV++ HS+WAEF+
Sbjct: 85 SPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVRAHSSWAEFQ 144
Query: 145 DYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGT 204
+YFRQQEGEKR++AFTKRGT HS+ SYR GDYL+FGSET GLPPEAL DC E +GGGT
Sbjct: 145 EYFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGLPPEALSDCKHEPYGGGT 204
Query: 205 IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260
+RIPMVETYVRCLNLSVSVGIA+YEA+RQLNYEQ++ A + C++ E P +TEDIFA
Sbjct: 205 LRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPEGCVNGEEPLLTEDIFA 260
>gi|357457641|ref|XP_003599101.1| tRNA/rRNA methyltransferase, putative [Medicago truncatula]
gi|355488149|gb|AES69352.1| tRNA/rRNA methyltransferase, putative [Medicago truncatula]
Length = 278
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 175/254 (68%), Positives = 195/254 (76%), Gaps = 11/254 (4%)
Query: 18 HFRSRAPNFTQ--FKNNFSFSS--------PLSSFSSFRFSPICSLPERENGGFMPRGVG 67
HFRS+ F Q FK F S PLSS + S G +P+GVG
Sbjct: 25 HFRSKLSLFRQLHFKPTSPFPSISSPPHLLPLSSSLATNGSVAAENEISSKEGSLPQGVG 84
Query: 68 EAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLD 127
E VN S +K LQVVLVSPQIPGNTGCIARTCAASA GLHLVGPLG++VDDTKLKRAGLD
Sbjct: 85 EGVNQASHSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLD 144
Query: 128 YWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGL 187
YWPYVV+K+H +W FRDYF QQEGEKRLLAFTKRGT HS+ SYRKGDYL+FG+ET+GL
Sbjct: 145 YWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGL 204
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCI 247
PPEALLDC +E FGGGTI+IPMVETYVRCLNLSVSVGIA+YEA+RQLNYE L+ S+TCI
Sbjct: 205 PPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCI 264
Query: 248 D-REFPFITEDIFA 260
D E FITEDIF
Sbjct: 265 DTEEESFITEDIFG 278
>gi|359487352|ref|XP_003633573.1| PREDICTED: putative tRNA (cytidine(34)-2'-O)-methyltransferase-like
[Vitis vinifera]
Length = 292
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/218 (75%), Positives = 180/218 (82%), Gaps = 4/218 (1%)
Query: 46 RFSPICSLP---ERENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAAS 102
R SP S P +R + +P G GE V +S N+ LQVVLVSPQIPGNTG IARTCAAS
Sbjct: 76 RHSPF-SFPYKAKRGSDSSLPNGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAAS 134
Query: 103 ACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKR 162
A GLHL+ PLGFQVDD KLKRAGLDYWPYVV+KVH +WAEFR+YFRQQEGEKRLLAFTKR
Sbjct: 135 AVGLHLIEPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKR 194
Query: 163 GTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVS 222
GT+ HS+ SYRKGD+LIFGSET GLPPEALLDC SE GGGTIRIPMVETYVRCLNLSVS
Sbjct: 195 GTNIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVS 254
Query: 223 VGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260
VGIA+YEA+RQLNYEQL+ SD D F+TEDIFA
Sbjct: 255 VGIALYEASRQLNYEQLQFPSDPPTDSSKSFLTEDIFA 292
>gi|334187967|ref|NP_001190406.1| protein agamous-like 26 [Arabidopsis thaliana]
gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana]
gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana]
gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana]
gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana]
Length = 263
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/251 (64%), Positives = 191/251 (76%), Gaps = 10/251 (3%)
Query: 18 HFRSRAPNF-----TQFKNNFSFSSPLSSFSSFRFSPI---CSLPERENGGFMPRGVGEA 69
H RS F T K S S ++SFSS S + E + +PRG GE
Sbjct: 15 HLRSSGRLFPSLSLTHLKGKLSLS--INSFSSKIQSHALRGVGIGESDKKNPLPRGAGEG 72
Query: 70 VNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYW 129
V +++K L VVLVSPQIPGNTGCIARTCAASA GLHLVGPLGFQVDD ++KRAGLDYW
Sbjct: 73 VKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYW 132
Query: 130 PYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPP 189
P+VV+K HS+WAEF++YFR QEGEKR++AFTKRGT HS+ SYR GDYL+FGSETSGLPP
Sbjct: 133 PFVVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPP 192
Query: 190 EALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
EAL DC E +GGGT+RIPMVETYVRCLNLSVSVGIA+YEA+RQLNYEQ++ A C++
Sbjct: 193 EALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPQGCVNG 252
Query: 250 EFPFITEDIFA 260
E P +TEDIFA
Sbjct: 253 EEPLLTEDIFA 263
>gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 293 bits (749), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 138/195 (70%), Positives = 155/195 (79%)
Query: 66 VGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAG 125
VG V + L VVLVSP IPGNTG IARTCAASA GLHLVGPLGF VDDTKLKRAG
Sbjct: 58 VGSGVEVARAKRMLHVVLVSPMIPGNTGSIARTCAASAVGLHLVGPLGFHVDDTKLKRAG 117
Query: 126 LDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETS 185
LDYWPYVV+K+H +W EFRDYF +Q+G+KRLLAFTKRGT HS+ SY+ GD+L+FGSET
Sbjct: 118 LDYWPYVVVKIHDSWGEFRDYFMKQDGQKRLLAFTKRGTHVHSDFSYKPGDWLVFGSETK 177
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
GLP AL DC+ E GGGTIRIPMVETYVRCLNLSVSVGIA+YEAARQLNYEQL+ D
Sbjct: 178 GLPESALEDCSGEAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQLQYQPDL 237
Query: 246 CIDREFPFITEDIFA 260
+ + F EDI+
Sbjct: 238 PEEAQGLFPAEDIYG 252
>gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group]
Length = 254
Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/195 (70%), Positives = 156/195 (80%)
Query: 66 VGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAG 125
VG + L VVLVSP IPGNTG IARTCAASA GLHLVGPLGF+VDDTKLKRAG
Sbjct: 60 VGSGAEVARAKRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAG 119
Query: 126 LDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETS 185
LDYWPYVV+K+H +W EFRDYF +Q+GEKRLLAFTKRGTS HS+ SY+ GD+L+FGSET
Sbjct: 120 LDYWPYVVVKIHDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETK 179
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
GLP AL DC+ E GGGTIRIPMVETYVRCLNLSVSVG+A+YEAARQLNYEQL +
Sbjct: 180 GLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPEL 239
Query: 246 CIDREFPFITEDIFA 260
+ + F EDI+A
Sbjct: 240 PEEAQGLFPAEDIYA 254
>gi|357148391|ref|XP_003574745.1| PREDICTED: putative tRNA (cytidine(34)-2'-O)-methyltransferase-like
[Brachypodium distachyon]
Length = 255
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 153/195 (78%)
Query: 66 VGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAG 125
VG V + L VVLVSP IPGNTG IARTCAASA GLHLVGPLG+ VDDTKLKRAG
Sbjct: 61 VGSGVEVARAKRMLHVVLVSPMIPGNTGSIARTCAASAVGLHLVGPLGYNVDDTKLKRAG 120
Query: 126 LDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETS 185
LDYWPYVV+KVH +W EFR+YF +Q+G+KRLLAFTKRGT+ HS+ SY+ GD+L+FGSET
Sbjct: 121 LDYWPYVVVKVHDSWDEFREYFMKQDGDKRLLAFTKRGTNIHSDFSYKPGDWLVFGSETK 180
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
GL L DC+ E GGGTIRIPMVETYVRCLNLSVSVG+A+YEAARQLNYEQL+ D
Sbjct: 181 GLADNVLEDCSGEAIGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLQYQPDL 240
Query: 246 CIDREFPFITEDIFA 260
+ F EDI+
Sbjct: 241 PEEARGLFPAEDIYG 255
>gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
Length = 257
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/185 (71%), Positives = 152/185 (82%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
+ L VVLVSP IPGNTG IARTCAASA GLHLVGPLG++VDDTKLKRAGLDYWPYVV+K
Sbjct: 73 RRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVK 132
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
+H +W F DYF +QEG+KRLLAFTKRGT HS+ SYR GD+L+FGSET GLP +AL DC
Sbjct: 133 IHDSWDHFFDYFMKQEGDKRLLAFTKRGTQIHSDFSYRPGDWLVFGSETKGLPQQALEDC 192
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFIT 255
E GGGT+RIPMVETYVRCLNLSVSVGIA+YEAARQLNYEQL+ + + + F
Sbjct: 193 CREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQLQYQPELPEEAQGLFPA 252
Query: 256 EDIFA 260
EDI+A
Sbjct: 253 EDIYA 257
>gi|334187965|ref|NP_198040.3| protein agamous-like 26 [Arabidopsis thaliana]
gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana]
Length = 368
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/212 (64%), Positives = 159/212 (75%), Gaps = 10/212 (4%)
Query: 18 HFRSRAPNF-----TQFKNNFSFSSPLSSFSSFRFSPI---CSLPERENGGFMPRGVGEA 69
H RS F T K S S ++SFSS S + E + +PRG GE
Sbjct: 15 HLRSSGRLFPSLSLTHLKGKLSLS--INSFSSKIQSHALRGVGIGESDKKNPLPRGAGEG 72
Query: 70 VNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYW 129
V +++K L VVLVSPQIPGNTGCIARTCAASA GLHLVGPLGFQVDD ++KRAGLDYW
Sbjct: 73 VKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYW 132
Query: 130 PYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPP 189
P+VV+K HS+WAEF++YFR QEGEKR++AFTKRGT HS+ SYR GDYL+FGSETSGLPP
Sbjct: 133 PFVVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPP 192
Query: 190 EALLDCTSETFGGGTIRIPMVETYVRCLNLSV 221
EAL DC E +GGGT+RIPMVETYVRCLNLS+
Sbjct: 193 EALSDCNHEPYGGGTLRIPMVETYVRCLNLSI 224
>gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 223
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 146/213 (68%)
Query: 48 SPICSLPERENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLH 107
S + + E + G GE Q + LQVVLVSPQIPGNTG IARTCAA+ GLH
Sbjct: 11 SSVNAASEGKKGLLRHGSWGEVAERDQQQRLLQVVLVSPQIPGNTGSIARTCAATCVGLH 70
Query: 108 LVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTH 167
LV P+GF+V+D+KL+RAGLDYWP+VV++VH +W +F YF++QEGEKRLLAFTK+G + H
Sbjct: 71 LVEPMGFKVEDSKLRRAGLDYWPFVVVRVHKSWDDFFTYFQEQEGEKRLLAFTKKGRTIH 130
Query: 168 SEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAV 227
+++ Y+ GD+L+FGSE GLP L C S F GG++R PM ++YVR LNLSV+ GI V
Sbjct: 131 TDVKYKAGDWLVFGSEVDGLPAAILEQCRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGV 190
Query: 228 YEAARQLNYEQLKTASDTCIDREFPFITEDIFA 260
YEA RQL+ + D + + DI+A
Sbjct: 191 YEALRQLDSHTNYSTLDVIPSQPVEALHNDIYA 223
>gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera]
Length = 205
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/206 (59%), Positives = 138/206 (66%), Gaps = 40/206 (19%)
Query: 55 ERENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGF 114
+R + +P G GE V +S N+ LQVVLVSPQIPGNTG IARTCAASA GLHL+
Sbjct: 40 KRGSDSSLPNGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLI----- 94
Query: 115 QVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRK 174
+EGEKRLLAFTKRGT+ HS+ SYRK
Sbjct: 95 -----------------------------------EEGEKRLLAFTKRGTNIHSDFSYRK 119
Query: 175 GDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
GD+LIFGSET GLPPEALLDC SE GGGTI+IPMVETYVRCLNLSVSVGIA+YEA+RQL
Sbjct: 120 GDWLIFGSETCGLPPEALLDCKSEALGGGTIQIPMVETYVRCLNLSVSVGIALYEASRQL 179
Query: 235 NYEQLKTASDTCIDREFPFITEDIFA 260
NYEQL+ SD D F+TEDIFA
Sbjct: 180 NYEQLQFPSDPSTDSSKSFLTEDIFA 205
>gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group]
gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group]
gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group]
Length = 236
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/195 (61%), Positives = 136/195 (69%), Gaps = 18/195 (9%)
Query: 66 VGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAG 125
VG + L VVLVSP IPGNTG IARTCAASA GLHLVG
Sbjct: 60 VGSGAEVARAKRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGVR------------- 106
Query: 126 LDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETS 185
YVV+K+H +W EFRDYF +Q+GEKRLLAFTKRGTS HS+ SY+ GD+L+FGSET
Sbjct: 107 -----YVVVKIHDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETK 161
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
GLP AL DC+ E GGGTIRIPMVETYVRCLNLSVSVG+A+YEAARQLNYEQL +
Sbjct: 162 GLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPEL 221
Query: 246 CIDREFPFITEDIFA 260
+ + F EDI+A
Sbjct: 222 PEEAQGLFPAEDIYA 236
>gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis
thaliana]
Length = 271
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/267 (51%), Positives = 165/267 (61%), Gaps = 34/267 (12%)
Query: 18 HFRSRAPNF-----TQFKNNFSFSSPLSSFSSFRFSPI---CSLPERENGGFMPRGVGEA 69
H RS F T K S S ++SFSS S + E + +PRG GE
Sbjct: 15 HLRSSGRLFPSLSLTHLKGKLSLS--INSFSSKIQSHALRGVGIGESDKKNPLPRGAGEG 72
Query: 70 VNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVG--------------PLGFQ 115
V +++K L VVLVSPQIPGNTGCIARTCAASA GLHLVG PLGFQ
Sbjct: 73 VKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGVNVDDLICHLFLLQPLGFQ 132
Query: 116 VDDTKLKRAGLDYWPYVVIKVHSTWAEFR--DYFRQQEGEKRLLAFTKRGTSTHSEISYR 173
VDD ++KRAG K + ++ + R D F+ +A G + + SYR
Sbjct: 133 VDDARVKRAGGR-------KTNDSFYKKRNKDTFKIATITSNWVA-ENNGYNLMQDFSYR 184
Query: 174 KGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
GDYL+FGSETSGLPPEAL DC E +GGGT+RIPMVETYVRCLNLSVSVGIA+YEA+RQ
Sbjct: 185 SGDYLLFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQ 244
Query: 234 LNYEQLKTASDTCIDREFPFITEDIFA 260
LNYEQ++ A C++ E P +TEDIFA
Sbjct: 245 LNYEQIECAPQGCVNGEEPLLTEDIFA 271
>gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
Length = 157
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/157 (66%), Positives = 127/157 (80%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
LQVVLVSPQIPGNTG ARTCAA GLHLV PLGF ++D+KLKRAGLDYW Y+V+KVH
Sbjct: 1 LQVVLVSPQIPGNTGTTARTCAAVLAGLHLVKPLGFSIEDSKLKRAGLDYWKYIVVKVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W F DYFRQQEGEKRL+A+TK G ++ ++SY+ GD+L+FGSET GL PE +C++
Sbjct: 61 SWPHFLDYFRQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAPEIHEECSTG 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
GGT+RIPM + +VRCLNLSVSVGI VYEA RQL+
Sbjct: 121 VHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQLD 157
>gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 206
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 121/155 (78%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVLVSPQIPGN+G IARTCAA+ GLHLV PLG+++D +KLK GL+YWPYVV+KVH +W
Sbjct: 27 VVLVSPQIPGNSGSIARTCAATGVGLHLVEPLGYKIDGSKLKSTGLEYWPYVVVKVHKSW 86
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+F YF++Q GEKRLLA+TK G H+++ Y+ GD+L+FGSE GLP AL T+ +
Sbjct: 87 NDFFTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEVDGLPAAALEQSTTGQY 146
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
GGTIR+PM E YVR LNLS+S GI VYEA RQL+
Sbjct: 147 AGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQLD 181
>gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 183
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/164 (58%), Positives = 119/164 (72%), Gaps = 5/164 (3%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
+Q K L VVLV+P+IPGNTGCIARTCAAS LHLV PLGF +DD +LKRAGLDYW V
Sbjct: 16 AQRKDLHVVLVTPKIPGNTGCIARTCAASRVPLHLVAPLGFSLDDAQLKRAGLDYWKSVC 75
Query: 134 IKVHSTWAEFRDYFRQQEGEK-RLLAFTKRGTSTHSEI-SYRKGDYLIFGSETSGLPPEA 191
+KVH W F Y+R+ E+ RL+AF+K G H+E +YR GD+L+FG+ET+GLP A
Sbjct: 76 VKVHDDWDAFYAYWRELGDERGRLVAFSKFGARPHAEDGAYRPGDWLLFGAETTGLPDAA 135
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ C + GG RIP+ E++VR LNLSVS GI VYEA RQL+
Sbjct: 136 MEACKAT---GGVRRIPIDESHVRSLNLSVSCGIGVYEALRQLD 176
>gi|125562106|gb|EAZ07554.1| hypothetical protein OsI_29808 [Oryza sativa Indica Group]
Length = 298
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 101/126 (80%)
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
K+H +W EFRDYF +Q+GEKRLLAFTKRGTS HS+ SY+ GD+L+FGSET GLP AL D
Sbjct: 173 KIHDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSALED 232
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFI 254
C+ E GGGTIRIPMVETYVRCLNLSVSVG+A+YEAARQLNYEQL + + + F
Sbjct: 233 CSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPELPEEAQGLFP 292
Query: 255 TEDIFA 260
EDI+A
Sbjct: 293 AEDIYA 298
>gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
nagariensis]
gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
nagariensis]
Length = 155
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVLV PQIP NTG +ARTCAA+A LHLVGPLGFQ+DD KLKRAGLDYW V + HS+W
Sbjct: 1 VVLVHPQIPQNTGNVARTCAATAAPLHLVGPLGFQLDDRKLKRAGLDYWDAVAVNTHSSW 60
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHS--EISYRKGDYLIFGSETSGLPPEALLDCTSE 198
F +F+Q KRL+AFT G ++ E SY+ GD+L+FG+ETSGLPP+A D +
Sbjct: 61 DAFFAFFQQLPNPKRLVAFTVYGDKYYAGPEFSYQPGDWLVFGAETSGLPPKAHSDVLAS 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
GG ++IP+ + +VR +NLSV+VG+ ++EA RQL+
Sbjct: 121 --GGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQLD 155
>gi|412990610|emb|CCO17982.1| predicted protein [Bathycoccus prasinos]
Length = 195
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 120/171 (70%), Gaps = 6/171 (3%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
SQ L VVLV PQIPGNTG IARTCAA+ LHLVGPLGF++DD KLKRAGLDYW V
Sbjct: 16 SQRTDLTVVLVCPQIPGNTGTIARTCAATQVPLHLVGPLGFELDDAKLKRAGLDYWQSVC 75
Query: 134 IKVHSTWAEFRDYFRQQEGEK--RLLAFTKRGTSTH-SEISYRKGDYLIFGSETSGLPPE 190
+KVH ++ F Y+++ E K RL+AF+K G +H + +Y+ GD+L+FGSE SGLP
Sbjct: 76 VKVHESYDAFYTYWQEIEASKRGRLVAFSKFGGKSHCARGAYKPGDWLLFGSEVSGLPEN 135
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
A C + GG RIP+ E +VR LNLSVSVG+ VYEA RQ++ + ++
Sbjct: 136 AHKHCEAT---GGIRRIPIDEEHVRSLNLSVSVGVGVYEALRQIDEKGMEV 183
>gi|384248249|gb|EIE21733.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase
[Coccomyxa subellipsoidea C-169]
Length = 164
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 118/158 (74%), Gaps = 9/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV+PQIP NTG IARTCAA+ GLHLVGPLG+++D+++LKRAGLDYWPYV +K
Sbjct: 5 LSVVLVNPQIPQNTGTIARTCAATGVGLHLVGPLGYEIDNSRLKRAGLDYWPYVTVK--- 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEIS-YRKGDYLIFGSETSGLPPEALLDCTS 197
EF ++ Q+G KRLLAF+K G+ ++ Y+ GD+L+FG+ET+GLP E +
Sbjct: 62 ---EFHSFWSGQQGPKRLLAFSKAGSCHYATPGLYQSGDWLLFGAETTGLPQEVY--DSL 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
E GG +R+P+VET+VR LNL+VS GI +YEA RQ++
Sbjct: 117 EQSGGVVVRVPIVETHVRSLNLAVSQGIGLYEAMRQID 154
>gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299]
gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299]
Length = 247
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 117/174 (67%), Gaps = 7/174 (4%)
Query: 64 RGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKR 123
R + A +G Q L VVLV+PQIPGNTG IARTCAA+ LHLVGPLGF + D +LKR
Sbjct: 58 RAIETASDG--QRSDLAVVLVTPQIPGNTGTIARTCAAARVPLHLVGPLGFDLTDAQLKR 115
Query: 124 AGLDYWPYVVIKVHSTWAEFRDYFRQQEGEK-RLLAFTKRGTSTHSEI-SYRKGDYLIFG 181
AGLDYW V ++VH W F Y+R G RL+AF+K G H+E +YR GD+L+FG
Sbjct: 116 AGLDYWNSVCVRVHDDWDAFHAYWRDALGAPGRLVAFSKFGARPHAEEGAYRSGDWLLFG 175
Query: 182 SETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ET+GLP A C GG RIP+ ET+VR LNL+VS G+ VYEA RQ++
Sbjct: 176 AETTGLPGAAHDACADS---GGIRRIPIDETHVRSLNLAVSAGVGVYEALRQID 226
>gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
Length = 170
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 115/164 (70%), Gaps = 6/164 (3%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
+Q L VVLV P+IPGNTGC+AR+CAA+ LHLV PL F++DD +LKRAGLDYW V
Sbjct: 7 TQRDDLAVVLVEPRIPGNTGCVARSCAAARVPLHLVDPL-FELDDARLKRAGLDYWKSVC 65
Query: 134 IKVHSTWAEFRDYFRQQE-GEKRLLAFTKRGTSTHSEI-SYRKGDYLIFGSETSGLPPEA 191
++VH +W F Y+R E EKRL+ F+K G H+E +YR+GD+L+FGSE GL +A
Sbjct: 66 VRVHPSWEAFYAYWRGVETTEKRLVGFSKLGARPHAETGAYRRGDWLLFGSEDKGLREDA 125
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ C GG RIP+ ET+VR LNLSVS GI +YEA RQL+
Sbjct: 126 MEACRQS---GGIRRIPIDETHVRSLNLSVSAGIGIYEALRQLD 166
>gi|434393909|ref|YP_007128856.1| RNA methyltransferase, TrmH family, group 2 [Gloeocapsa sp. PCC
7428]
gi|428265750|gb|AFZ31696.1| RNA methyltransferase, TrmH family, group 2 [Gloeocapsa sp. PCC
7428]
Length = 153
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 110/157 (70%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QIVLVHPQIPPNTGNIARTCAATETELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A F+ Y++Q+ G R + F+ RG+ ++ ++ D+L+FGSET+GLPP+ L +CT+
Sbjct: 63 IATFQSYYKQRGG--RTIGFSVRGSDNYAAFQFQADDWLLFGSETTGLPPDMLAECTA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM VR LNLSVSV I ++EA RQL Y
Sbjct: 119 ----TVYIPMPHPKVRSLNLSVSVAIGLFEARRQLGY 151
>gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 157
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 110/159 (69%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F DY QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTINDFCDY--QQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|427705804|ref|YP_007048181.1| tRNA/rRNA methyltransferase SpoU [Nostoc sp. PCC 7107]
gi|427358309|gb|AFY41031.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc sp. PCC 7107]
Length = 153
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 110/157 (70%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHEHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A F+ +Q+ G R L F+ RG+ +++ ++ D+L+FGSET+GL PEALL C +
Sbjct: 63 LAAFKSLHQQRGG--RCLGFSVRGSFNYTQFQFKPNDWLLFGSETTGLSPEALLICDT-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV I ++EA RQL Y
Sbjct: 119 ----TLYIPMFQPEVRSLNLSVSVAIGLFEARRQLGY 151
>gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Moorea producens 3L]
gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Moorea producens 3L]
Length = 153
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
++VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV +K H
Sbjct: 1 MVKVVLINPQIPPNTGNIARTCAATTTQLHLVGPLGFEISDRYLKRAGLDYWPYVDLKYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F Y ++QEG R + FTKRGT + + ++ D+L+FG ET+GLPP L C +
Sbjct: 61 DSFDAFVSYHQKQEG--RWIGFTKRGTYNYIKFQFQPKDWLLFGCETTGLPPHVLEACQA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ F IPM + VR LNLSVS + ++EA RQL Y
Sbjct: 119 KVF------IPMTQPGVRSLNLSVSAALGLFEARRQLGY 151
>gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
IMS101]
Length = 153
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLV PQIP NTG +ARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H+
Sbjct: 3 NIVLVYPQIPQNTGNVARTCAATKTELHLVGPLGFEISDRYLKRAGLDYWPYVKLNYHND 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
WAEF+ Y + G RL+ F+K G +++ Y+ D+L+FGSET+GLP + L C++
Sbjct: 63 WAEFKVYHHKLGG--RLIGFSKMGKLNYTKFQYQTNDWLLFGSETNGLPKDVLNYCSA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVS + ++EA RQL Y
Sbjct: 119 ----TLYIPMTQPNVRSLNLSVSAALGLFEARRQLGY 151
>gi|425455872|ref|ZP_18835583.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389803153|emb|CCI17888.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 157
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 110/159 (69%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F +Y QQ+ R + F+ RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCEY--QQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|425462561|ref|ZP_18842034.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389824356|emb|CCI26724.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 157
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCAY--QQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|425451277|ref|ZP_18831099.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|389767479|emb|CCI07116.1| putative enzyme [Microcystis aeruginosa PCC 7941]
Length = 157
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTINDFCAY--QQKSGGRAIGFTVRGSSSYLEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|425437019|ref|ZP_18817448.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389678121|emb|CCH93004.1| putative enzyme [Microcystis aeruginosa PCC 9432]
Length = 158
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 6 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 65
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 66 LTINDFCVY--QQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 123
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 124 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 156
>gi|425464805|ref|ZP_18844115.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389833100|emb|CCI22703.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 157
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTINDFCVY--QQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|422301672|ref|ZP_16389037.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389789262|emb|CCI14670.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 157
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCVY--QQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|425472616|ref|ZP_18851457.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389881276|emb|CCI38154.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 157
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCVY--QQKSGGRAIGFTVRGSSSYLEYSYQSGDWLLFGSETDGIPADLLNQCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|425442127|ref|ZP_18822384.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389716962|emb|CCH98860.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 157
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + FT RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCVY--QQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNQCDH 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|443319668|ref|ZP_21048846.1| putative rRNA methylase SpoU family [Gloeocapsa sp. PCC 73106]
gi|442790612|gb|ELS00168.1| putative rRNA methylase SpoU family [Gloeocapsa sp. PCC 73106]
Length = 154
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 107/159 (67%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+QVVL+ PQIP NTG +ARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV ++ H
Sbjct: 1 MVQVVLIQPQIPPNTGNVARTCAATETELHLVGPLGFEISDRYLKRAGLDYWPYVNLQYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +FR Q+ G RLL FT G + + ++ GD+L+FGSETSGLPP L C +
Sbjct: 61 PQYPDFRAMQEQRGG--RLLGFTVSGNHNYLDWKFQAGDWLLFGSETSGLPPSTLELCHA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IPM + VR LNLSVSV IA++EA RQL +
Sbjct: 119 RLY------IPMTQPKVRSLNLSVSVAIALFEARRQLTH 151
>gi|428779192|ref|YP_007170978.1| rRNA methylase [Dactylococcopsis salina PCC 8305]
gi|428693471|gb|AFZ49621.1| rRNA methylase, putative, group 2 [Dactylococcopsis salina PCC
8305]
Length = 156
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 104/157 (66%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L++VL PQIP NTG IARTCAA LHLVG LGF++ D +KRAGLDYWPYV + H
Sbjct: 1 MLKIVLYEPQIPPNTGNIARTCAALKTELHLVGNLGFEISDRAVKRAGLDYWPYVDLHQH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W F+ Q+ G RL+AF+ +G S+H+ ++ GD+L+FG E GLPPE + +C
Sbjct: 61 ADWTAFKKIQTQRGG--RLIAFSVKGKSSHTSYPFQNGDWLLFGQENKGLPPEIMANCDE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+RIPM+ VR LNLSVSV + +YEA RQL
Sbjct: 119 ------ILRIPMIHPQVRSLNLSVSVAVGLYEAKRQL 149
>gi|390438783|ref|ZP_10227222.1| putative enzyme [Microcystis sp. T1-4]
gi|389837789|emb|CCI31346.1| putative enzyme [Microcystis sp. T1-4]
Length = 157
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + F+ RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCAY--QQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNQCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|354565602|ref|ZP_08984776.1| tRNA/rRNA methyltransferase (SpoU) [Fischerella sp. JSC-11]
gi|353548475|gb|EHC17920.1| tRNA/rRNA methyltransferase (SpoU) [Fischerella sp. JSC-11]
Length = 153
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+P IP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPLIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ Q+ G R L F+ RG ++ YR D+L+FGSET+GLPPE + C +
Sbjct: 63 LEAFKTLHEQRGG--RRLGFSVRGNYNYASFQYRVDDWLLFGSETTGLPPEVISSCDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV +A++EA RQL Y
Sbjct: 119 ----TVYIPMSQPKVRSLNLSVSVAVALFEAHRQLGY 151
>gi|75909401|ref|YP_323697.1| RNA methyl transferase TrmH [Anabaena variabilis ATCC 29413]
gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC
29413]
Length = 153
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H T
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKT 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F + +++ G RLL F+ G+S++ + Y+ D+L+FGSET+GLPP L C +
Sbjct: 63 IEAFENVHQERGG--RLLGFSVSGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV + ++E RQL Y
Sbjct: 119 ----TLYIPMAEPGVRSLNLSVSVAVGLFEVRRQLGY 151
>gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
gi|257060094|ref|YP_003137982.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8802]
gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
8801]
gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
8802]
Length = 152
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 8/158 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L++VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 1 MLKIVLVHPQIPPNTGNIARTCAATETELHLVGPLGFELSDRYLKRAGLDYWPYVNLHYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
AEF ++Q G RL+ F+ RG S + + ++++ D+L+FGSET GLP L +C +
Sbjct: 61 KDLAEFYSVYQQHTG--RLIGFSVRGQSPYHQWTFQENDWLLFGSETEGLPKSVLENCDA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
T+ IPM ++ VR LNLSVSV I ++EA RQL+
Sbjct: 119 ------TLYIPMSQSKVRSLNLSVSVTIGLFEARRQLS 150
>gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120]
gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120]
Length = 153
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H T
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKT 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F + +++ G RLL F+ G+S++ + Y+ D+L+FGSET+GLPP L C +
Sbjct: 63 LEAFENAHQERGG--RLLGFSVGGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV + ++E RQL Y
Sbjct: 119 ----TLYIPMAEPGVRSLNLSVSVAVGLFEVRRQLGY 151
>gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 157
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + H
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPHVKLMYH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + F+ RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCAY--QQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|427736317|ref|YP_007055861.1| putative rRNA methylase SpoU family [Rivularia sp. PCC 7116]
gi|427371358|gb|AFY55314.1| putative rRNA methylase SpoU family [Rivularia sp. PCC 7116]
Length = 153
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 108/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QIVLVHPQIPPNTGNIARTCAATGTELHLVGPLGFEITDRYLKRAGLDYWPYVKLHNHQS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+F+ + +Q+ G RLL F+ RG ++ Y+ D+L+FGSET+GLP + L +C +
Sbjct: 63 LEDFKVFHQQRGG--RLLGFSVRGNFNYTAYEYQPTDWLLFGSETTGLPSDVLAECDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I+++EA R L Y
Sbjct: 119 ----TLHIPMKEAKVRSLNLSVSVAISLFEARRFLGY 151
>gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii]
Length = 153
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 6/155 (3%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV PQIP NTG +AR+CAA+ LHLVGPLGF++D+ KLKRAGLDYW V + +HSTW
Sbjct: 1 IVLVHPQIPQNTGNVARSCAATGTPLHLVGPLGFELDNKKLKRAGLDYWDNVAVALHSTW 60
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F F G KRL+AFT G E +Y+ GD+L+FG+ETSGLPP+
Sbjct: 61 DHFFAAFINLPGPKRLVAFTVAGWDDTVEFTYQSGDWLVFGAETSGLPPQVRPVTVRYA- 119
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
RIP+ +T+VR +NL+V+ GI ++EA RQL+
Sbjct: 120 -----RIPIRDTHVRSINLAVAAGIGLFEAVRQLD 149
>gi|425447573|ref|ZP_18827558.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389731826|emb|CCI04162.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 157
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + +
Sbjct: 5 ILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYY 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T +F Y QQ+ R + F+ RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 65 LTIDDFCAY--QQKSGGRAIGFSVRGSSSYLEYSYQSGDWLLFGSETDGIPADLLNQCDD 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 123 ------TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 155
>gi|428775387|ref|YP_007167174.1| TrmH family RNA methyltransferase [Halothece sp. PCC 7418]
gi|428689666|gb|AFZ42960.1| RNA methyltransferase, TrmH family, group 2 [Halothece sp. PCC
7418]
Length = 153
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 102/157 (64%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL PQIP NTG IARTCAA+ LHLVG LGF + D +KRAGLDYWPYV + H
Sbjct: 1 MLKVVLYEPQIPPNTGNIARTCAATKTELHLVGKLGFDISDRAVKRAGLDYWPYVDLHRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S WA F Q+ G RL+AF+ +G S+H ++R+ D+L+FG E GLPPE + C
Sbjct: 61 SDWASFITVQHQRGG--RLIAFSVKGESSHLSQTFREEDWLLFGQENKGLPPEIMASCDQ 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+RIPM VR LNLSVSV I +YEA RQ+
Sbjct: 119 ------ILRIPMPHPKVRSLNLSVSVAIGLYEAKRQI 149
>gi|434388802|ref|YP_007099413.1| putative rRNA methylase SpoU family [Chamaesiphon minutus PCC 6605]
gi|428019792|gb|AFY95886.1| putative rRNA methylase SpoU family [Chamaesiphon minutus PCC 6605]
Length = 154
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 104/155 (67%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV +K+H +
Sbjct: 3 QLVLVNPQIPPNTGNIARTCAATRTDLHLVGPLGFEITDRYLKRAGLDYWPYVSLKIHPS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F + RQQ G R + F+ RG +H + ++ D+L+FGSET GLP E L C
Sbjct: 63 IEAFIQFHRQQAG--RCVGFSVRGKCSHFQFQFQADDWLLFGSETEGLPAEILEYCAQ-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM E VR LNLSVS I ++EA RQL
Sbjct: 119 ----TVYIPMSEPGVRSLNLSVSAAIGLFEARRQL 149
>gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
Length = 152
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 106/156 (67%), Gaps = 9/156 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVL+SPQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 4 VVLISPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSHDNL 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F+ +Q+ G R + F+ +G +++ ++ D+L+FG+ET+GLPPE L CT+
Sbjct: 64 EAFKACHQQRGG--RWIGFSTKGQCSYTRFEFQNNDWLLFGAETTGLPPEILEACTN--- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIPM E VR LNLSVSV + ++EA RQL Y
Sbjct: 119 ----VRIPMSEPGVRSLNLSVSVAVGLFEAQRQLGY 150
>gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
Length = 153
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 111/157 (70%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVLV P+IP NTG IARTCAA+ LHLV PLGF++ + LKRAGLDYWP+V ++ H
Sbjct: 1 MLRVVLVYPEIPPNTGNIARTCAATQTELHLVEPLGFEISNRYLKRAGLDYWPFVKLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++WA F + RQQ+G R ++F+K GT ++ + + + D+LIFGSE+SGLPP+ L D ++
Sbjct: 61 ASWAAF-EQVRQQQG-GRSVSFSKSGTHSYLQFQFCEDDWLIFGSESSGLPPDILQDSSA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+RIPM VR LNLSVS + ++EA RQL
Sbjct: 119 ------VLRIPMAHEQVRSLNLSVSAAVGLFEARRQL 149
>gi|428211408|ref|YP_007084552.1| putative rRNA methylase SpoU family [Oscillatoria acuminata PCC
6304]
gi|427999789|gb|AFY80632.1| putative rRNA methylase SpoU family [Oscillatoria acuminata PCC
6304]
Length = 153
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV PQIP NTG IARTCAA+ LHLVGPLGF+ D LKRAGLDYWPYV + H
Sbjct: 3 QVVLVHPQIPPNTGNIARTCAATGTPLHLVGPLGFETSDRYLKRAGLDYWPYVDVHFHED 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A FR + RQ G R L F+ RG+ + E ++ D+L+FGSET+GL PE L +C
Sbjct: 63 LAAFRAFHRQ--GGGRQLGFSARGSDNYIEFEFQPNDWLLFGSETTGLSPELLDECDR-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM VR LNLSVS + ++EA RQL
Sbjct: 119 ----TLYIPMTHPKVRSLNLSVSAALGLFEALRQL 149
>gi|428304938|ref|YP_007141763.1| TrmH family RNA methyltransferase [Crinalium epipsammum PCC 9333]
gi|428246473|gb|AFZ12253.1| RNA methyltransferase, TrmH family, group 2 [Crinalium epipsammum
PCC 9333]
Length = 153
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 108/159 (67%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
++VVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 1 MVRVVLVNPQIPPNTGNIARTCAATCTELHLVGPLGFEISDRYLKRAGLDYWPYVSLNYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
EF Y G RL+ F+ G+S+ S++ ++ D+L+FGSET+GLP E + C++
Sbjct: 61 KAIEEFISYSENLGG--RLIGFSVAGSSSFSKLEFQDQDWLLFGSETNGLPSEMINACSA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV I ++EA RQL Y
Sbjct: 119 ------TVYIPMTQPGVRSLNLSVSVAIGLFEARRQLGY 151
>gi|414869402|tpg|DAA47959.1| TPA: hypothetical protein ZEAMMB73_982403 [Zea mays]
Length = 203
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 83/103 (80%)
Query: 66 VGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAG 125
VG V + L VVLVSP IPGNTG IARTCAASA GLHLVGPLG++VDDTKLKRAG
Sbjct: 93 VGSGVEVARARRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGYKVDDTKLKRAG 152
Query: 126 LDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHS 168
LDYWPYVV+K+H +W F DYF +QEG+KRLLAFTKRGT HS
Sbjct: 153 LDYWPYVVVKIHDSWDHFCDYFMKQEGDKRLLAFTKRGTHIHS 195
>gi|359462407|ref|ZP_09250970.1| RNA methyltransferase [Acaryochloris sp. CCMEE 5410]
Length = 153
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 110/157 (70%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L++VLV P+IP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWP+V ++ H
Sbjct: 1 MLRIVLVYPEIPPNTGNIARTCAATQTELHLVEPLGFEISDRYLKRAGLDYWPFVKLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W F + RQQ+G R ++F+K GT ++ + + + D+LIFGSE+SGLPP+ L D ++
Sbjct: 61 ASWDTF-EQVRQQQG-GRSVSFSKSGTHSYLQFQFCEDDWLIFGSESSGLPPDILQDSSA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+RIPM VR LNLSVS + ++EA RQL
Sbjct: 119 ------VLRIPMAHEQVRSLNLSVSAAVGLFEARRQL 149
>gi|427419292|ref|ZP_18909475.1| putative rRNA methylase SpoU family [Leptolyngbya sp. PCC 7375]
gi|425762005|gb|EKV02858.1| putative rRNA methylase SpoU family [Leptolyngbya sp. PCC 7375]
Length = 157
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 108/163 (66%), Gaps = 8/163 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
++VLV+P+IP NTG IARTCAA+A LHL+ PLGFQ+ D LKRAGLDYWP+V ++VH
Sbjct: 3 KIVLVNPEIPPNTGNIARTCAATATELHLIEPLGFQLSDRYLKRAGLDYWPHVNLQVHPD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F Y QQ+ RL+ FT + T ++ EI Y++ D+L+FGSE+ GLP L C
Sbjct: 63 LNSFWQY--QQQIGGRLIGFTTKSTYSYIEIKYQEDDWLLFGSESEGLPRSLLETCEQ-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
T +IPM+ VR LNLSVS I ++EA RQLNY TA
Sbjct: 119 ----TAKIPMLHDSVRSLNLSVSAAIGLFEALRQLNYLSSPTA 157
>gi|434400382|ref|YP_007134386.1| tRNA/rRNA methyltransferase (SpoU) [Stanieria cyanosphaera PCC
7437]
gi|428271479|gb|AFZ37420.1| tRNA/rRNA methyltransferase (SpoU) [Stanieria cyanosphaera PCC
7437]
Length = 156
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L++VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 3 LRIVLVQPQIPPNTGNIARTCAATNTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHYHQ 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F ++Q G RLL FT RGT+ + + Y+ D+L+FGSE SGLP E L C +
Sbjct: 63 DWQAFWSNYQQLGG--RLLGFTVRGTTHYLDCQYQADDWLLFGSELSGLPTEVLDFCNYK 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ IP+ + VR LNLSVSV I ++EA RQL+
Sbjct: 121 VY------IPISQPEVRSLNLSVSVTIGLFEARRQLD 151
>gi|427718242|ref|YP_007066236.1| tRNA/rRNA methyltransferase SpoU [Calothrix sp. PCC 7507]
gi|427350678|gb|AFY33402.1| tRNA/rRNA methyltransferase (SpoU) [Calothrix sp. PCC 7507]
Length = 153
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 107/159 (67%), Gaps = 8/159 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A F+ +++ G R L F+ G+S + + ++ D+L+FGSET+GL P L C +
Sbjct: 63 LAAFQTLHQERGG--RWLGFSVGGSSNYVQFQFQANDWLLFGSETTGLSPTVLSACDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
T+ IPM + VR LNLSVSV + ++EA RQL Y Q
Sbjct: 119 ----TLHIPMHQPQVRSLNLSVSVAVGLFEARRQLGYLQ 153
>gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|354554878|ref|ZP_08974181.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. ATCC
51472]
gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|353553032|gb|EHC22425.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. ATCC
51472]
Length = 153
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V ++ H
Sbjct: 3 RVVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLQYHLD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+F+ Y +QQ+G RLL F+ RG S + + +++ D+L+FGSET GLPP C
Sbjct: 63 LEQFQAYHQQQKG--RLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPPTFQDQCDQML 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IPM VR LNLSVSV I ++EA RQL++
Sbjct: 121 Y------IPMPHPEVRSLNLSVSVAIGLFEALRQLDH 151
>gi|440756826|ref|ZP_20936026.1| spoU rRNA Methylase family protein [Microcystis aeruginosa TAIHU98]
gi|443662733|ref|ZP_21133003.1| spoU rRNA Methylase family protein [Microcystis aeruginosa
DIANCHI905]
gi|440172855|gb|ELP52339.1| spoU rRNA Methylase family protein [Microcystis aeruginosa TAIHU98]
gi|443332025|gb|ELS46655.1| spoU rRNA Methylase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 150
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 107/156 (68%), Gaps = 8/156 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VL++PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + H T
Sbjct: 1 MVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPHVKLMYHLTI 60
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+F Y QQ+ R + F+ RG+S++ E SY+ GD+L+FGSET G+P + L C
Sbjct: 61 DDFCAY--QQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDD--- 115
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM E VR LNLSVSV I ++EA RQL +
Sbjct: 116 ---TVYIPMAEPGVRSLNLSVSVAIGLFEARRQLGF 148
>gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
Length = 154
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 104/157 (66%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVL+ PQIP NTG +ARTCAA+ LHLVGPLGF++ D L+RAGLDYWPYV +K+HS+
Sbjct: 3 RVVLIQPQIPPNTGNVARTCAATRTELHLVGPLGFEISDRDLRRAGLDYWPYVPLKIHSS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ Y + G R + F+KRG +++ Y+ D+L+FG ET+GL PE L C
Sbjct: 63 IEAFKHYHQYWGG--RWIGFSKRGKQNYAQFQYQADDWLLFGPETTGLSPELLSACDV-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T IPM E VR LNLSVSV I + EA RQL +
Sbjct: 119 ----TTSIPMREPGVRSLNLSVSVAIGLLEAGRQLGF 151
>gi|428309236|ref|YP_007120213.1| rRNA methylase SpoU family [Microcoleus sp. PCC 7113]
gi|428250848|gb|AFZ16807.1| putative rRNA methylase SpoU family [Microcoleus sp. PCC 7113]
Length = 153
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 105/159 (66%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVLV PQIP NTG +ARTCAA++ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 1 MLRVVLVHPQIPPNTGNVARTCAATSTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ FR +QQ G R + F+ +G ++ + ++ D+L+ GSET GLPPE L C
Sbjct: 61 ESIDAFRAMTQQQGG--RWIGFSTKGKCSYVKFQFQANDWLLLGSETLGLPPEVLDACHE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVS +A++EA RQL Y
Sbjct: 119 ------TVHIPMTQPGVRSLNLSVSAAVALFEARRQLGY 151
>gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase SpoU [Nostoc punctiforme PCC 73102]
gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
Length = 153
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 105/159 (66%), Gaps = 8/159 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ +++ G R L +T G ++ Y+ D+L+FGSET+GLPP L DC +
Sbjct: 63 LEAFKTVHQERGG--RWLGYTVGGNFSYVSFRYQADDWLLFGSETTGLPPTILSDCDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
T+ IPM + VR LNLSVSV I ++E RQL Y Q
Sbjct: 119 ----TLYIPMSQPGVRSLNLSVSVAIGLFETRRQLGYLQ 153
>gi|440682731|ref|YP_007157526.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena cylindrica PCC 7122]
gi|428679850|gb|AFZ58616.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena cylindrica PCC 7122]
Length = 151
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 106/157 (67%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHNHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ +Q+ G RLL F+ RG+ + + ++ D+L+FGSET+GL AL C S
Sbjct: 63 LEAFKIIHQQRGG--RLLGFSVRGSINYLKCQFQADDWLLFGSETTGLSATALSHCDS-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IPM E VR LNLSVSV I ++E+ RQLNY
Sbjct: 119 ----ILHIPMNEPGVRSLNLSVSVAIGLFESRRQLNY 151
>gi|409990641|ref|ZP_11273987.1| tRNA/rRNA methyltransferase SpoU [Arthrospira platensis str.
Paraca]
gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
NIES-39]
gi|409938493|gb|EKN79811.1| tRNA/rRNA methyltransferase SpoU [Arthrospira platensis str.
Paraca]
Length = 153
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 104/155 (67%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV +K H+
Sbjct: 3 QLVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRYLKRAGLDYWPYVPLKYHTH 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+FR + + G R + F+ RG + +++ D+L+FGSET GLPPE L C +
Sbjct: 63 IEDFRAFHQPLGG--RWVGFSARGKQNYVSFPFQENDWLLFGSETEGLPPEVLALCQA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM + VR LNLSVS + ++EA RQL
Sbjct: 119 ----TVYIPMSQPNVRSLNLSVSAAVGLFEARRQL 149
>gi|428206876|ref|YP_007091229.1| tRNA/rRNA methyltransferase SpoU [Chroococcidiopsis thermalis PCC
7203]
gi|428008797|gb|AFY87360.1| tRNA/rRNA methyltransferase (SpoU) [Chroococcidiopsis thermalis PCC
7203]
Length = 154
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYW YV + H +
Sbjct: 3 QLVLVHPQIPPNTGNIARTCAATGTELHLVAPLGFEISDRYLKRAGLDYWQYVNLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F++Y+ ++ G R + F+ +G S + E ++ D+L+FGSET+GLPP L C +
Sbjct: 63 LDSFKNYYLERGG--RWVGFSVKGESNYIEYQFQADDWLLFGSETTGLPPAVLSACHARV 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IPM +T VR LNLSVSV + ++EA RQL Y
Sbjct: 121 Y------IPMAQTGVRSLNLSVSVAVGLFEARRQLGY 151
>gi|428300586|ref|YP_007138892.1| tRNA/rRNA methyltransferase SpoU [Calothrix sp. PCC 6303]
gi|428237130|gb|AFZ02920.1| tRNA/rRNA methyltransferase (SpoU) [Calothrix sp. PCC 6303]
Length = 152
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV P IP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWPYV ++ H +
Sbjct: 3 QVVLVHPLIPPNTGNIARTCAATGTELHLVAPLGFELSDRYLKRAGLDYWPYVKLQCHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F++ RQQ G R L F+ RGT+ +++ +Y D+LIFGSET+GLP A+ +C
Sbjct: 63 LEAFQNQ-RQQRG-GRCLGFSVRGTNNYAKFTYLPDDWLIFGSETTGLPESAISNCDE-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
I IPM E VR LNLSVSV ++++E+ RQL Y
Sbjct: 119 ----LIYIPMQEPNVRSLNLSVSVAVSLFESRRQLGY 151
>gi|428224721|ref|YP_007108818.1| tRNA/rRNA methyltransferase SpoU [Geitlerinema sp. PCC 7407]
gi|427984622|gb|AFY65766.1| tRNA/rRNA methyltransferase (SpoU) [Geitlerinema sp. PCC 7407]
Length = 153
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 104/157 (66%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
++VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D +LKRAGLDYWPYV + H T
Sbjct: 3 RIVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRQLKRAGLDYWPYVDLHYHET 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ F Y + G R L F+ G +S+ +++ D+L+FG ET GLP E L C +
Sbjct: 63 FDAFEVYHQTLGG--RQLGFSASGQYNYSKFEFQEEDWLLFGCETQGLPREVLAQCDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + +VR LNLSVS I ++EA RQL Y
Sbjct: 119 ----TLHIPMSQAHVRSLNLSVSAAIGLFEARRQLGY 151
>gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
CS-505]
gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
CS-505]
Length = 153
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 107/157 (68%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVL++PQIP NTG IARTCAA+A LHLVGPLGF++ D LKRAGLDYWP+V + H +
Sbjct: 3 QVVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ F +Q+ G RLL F+ RG + + +R D+L+FGSET+G+P L C S
Sbjct: 63 YHTFLKVHQQRGG--RLLGFSVRGNIDYIQYEFRPDDWLLFGSETTGIPENILDICDS-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV +A++E+ RQL Y
Sbjct: 119 ----TLYIPMDQPGVRSLNLSVSVAVALFESRRQLGY 151
>gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
gi|376004306|ref|ZP_09782031.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira sp. PCC 8005]
gi|423065922|ref|ZP_17054712.1| tRNA/rRNA methyltransferase [Arthrospira platensis C1]
gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
gi|375327325|emb|CCE17784.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira sp. PCC 8005]
gi|406712680|gb|EKD07864.1| tRNA/rRNA methyltransferase [Arthrospira platensis C1]
Length = 157
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 104/155 (67%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV +K H+
Sbjct: 7 QLVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRYLKRAGLDYWPYVPLKYHTH 66
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+F+ + + G R + F+ RG + +++ D+L+FGSET GLPPE L C +
Sbjct: 67 IEDFQAFHQPLGG--RWVGFSARGKQNYVSFQFQENDWLLFGSETEGLPPEVLALCQA-- 122
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM + VR LNLSVS + ++EA RQL
Sbjct: 123 ----TVYIPMCQPNVRSLNLSVSAAVGLFEARRQL 153
>gi|434405450|ref|YP_007148335.1| putative rRNA methylase SpoU family [Cylindrospermum stagnale PCC
7417]
gi|428259705|gb|AFZ25655.1| putative rRNA methylase SpoU family [Cylindrospermum stagnale PCC
7417]
Length = 153
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 105/159 (66%), Gaps = 8/159 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F++ ++ G R L FT G+ ++ ++ D+L+FGSET+GLP L C ++
Sbjct: 63 LEAFKNIHHERGG--RWLGFTVGGSCNYANFQFQADDWLLFGSETTGLPTAVLSACDAKV 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
+ IPM + VR LNLSVSV + ++EA RQL Y Q
Sbjct: 121 Y------IPMAQPGVRSLNLSVSVAVGLFEARRQLGYLQ 153
>gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
Length = 153
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 102/155 (65%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVYPQIPPNTGNIARTCAATGTELHLVAPLGFEISDRYLKRAGLDYWPYVKLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ QE R L FT RG ++ ++ D+L+FGSET+GLP L DC +
Sbjct: 63 LEAFQA--THQERGGRCLGFTVRGNFNYASFQFQADDWLLFGSETTGLPSTILSDCDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM E +VR LNLSVSV ++++EA RQL
Sbjct: 119 ----TLYIPMAEPHVRSLNLSVSVAVSLFEARRQL 149
>gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307]
gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307]
Length = 152
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 103/155 (66%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV P+IP NTG IARTCAA+ LHLV PLGF+++D +LKRAGLDYWP+V + HS+
Sbjct: 3 QIVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W EF + + G RLL F++ + ++ EI YR D+LIFG ET GL PE +C
Sbjct: 63 WGEFLKHHQHHSG--RLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDD-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ IPM + VR LNLSV+ + ++E+ RQL
Sbjct: 119 ----LLLIPMTCSAVRSLNLSVAAAVVLFESRRQL 149
>gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708]
Length = 153
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QIVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ +Q+ G RLL FT RG+ + ++ D+L++GSET+GLP L C S
Sbjct: 63 MEAFQTIHQQRGG--RLLGFTVRGSFNYINYQFQADDWLLYGSETTGLPATVLSTCDS-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IP+ E VR LNLS+SV I ++E+ RQL Y
Sbjct: 119 ----TLYIPIDEPGVRSLNLSISVAIGLFESRRQLGY 151
>gi|411117424|ref|ZP_11389911.1| putative rRNA methylase SpoU family [Oscillatoriales cyanobacterium
JSC-12]
gi|410713527|gb|EKQ71028.1| putative rRNA methylase SpoU family [Oscillatoriales cyanobacterium
JSC-12]
Length = 153
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ VVLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYW +V + H
Sbjct: 1 MINVVLVHPQIPPNTGNIARTCAATNTALHLVGPLGFEISDRYLKRAGLDYWHFVNLHYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S+ F+ + + Q+G R + F+ RG ++ + ++ D+L+FGSET GLPP+ L CT
Sbjct: 61 SSVEAFQAFCQTQQG--RCIGFSTRGRYSYIQFQFQANDWLLFGSETEGLPPDVLAWCTE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM + VR LNLSVSV I ++EA RQL
Sbjct: 119 ------TVYIPMAQPGVRSLNLSVSVAIGLFEARRQL 149
>gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
Length = 153
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 106/157 (67%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVL++PQIP NTG IARTCAA+A LHLVGPLGF++ D LKRAGLDYWP+V + H +
Sbjct: 3 QVVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ F +Q+ G RLL F+ RG + + + D+L+FGSET+G+P L C S
Sbjct: 63 YHTFLKVHQQRGG--RLLGFSVRGNINYIQHEFHPDDWLLFGSETTGIPKNILDICDS-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV +A++E+ RQL Y
Sbjct: 119 ----TLYIPMDQPGVRSLNLSVSVAVALFESRRQLTY 151
>gi|443311909|ref|ZP_21041531.1| putative rRNA methylase SpoU family [Synechocystis sp. PCC 7509]
gi|442777984|gb|ELR88255.1| putative rRNA methylase SpoU family [Synechocystis sp. PCC 7509]
Length = 153
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 103/155 (66%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATCTNLHLVAPLGFEISDRYLKRAGLDYWPYVNLHYHES 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A F+ Y +QQ G R + F+ G ++ I ++ D+L+FGSET+GLPP L C
Sbjct: 63 IAAFQLYQQQQGG--RTIGFSVAGKCSYLNIQFQPDDWLLFGSETTGLPPTILTSCQQTA 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ IPM + VR LNLSVSV + ++EA RQ+
Sbjct: 121 Y------IPMSQPGVRSLNLSVSVAVGLFEACRQV 149
>gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
gi|416396271|ref|ZP_11686424.1| putative rRNA methylase [Crocosphaera watsonii WH 0003]
gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
gi|357263003|gb|EHJ12068.1| putative rRNA methylase [Crocosphaera watsonii WH 0003]
Length = 155
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 105/156 (67%), Gaps = 8/156 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + +
Sbjct: 5 RVVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYYEN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+F + +QQEG RLL F+ RG S + E ++++ D+L+FGSET GLP + C
Sbjct: 65 LEQFVSFQKQQEG--RLLGFSVRGKSCYGECNFQENDWLVFGSETEGLPDKFREQCDQML 122
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ IPM VR LNLSVSV I ++EA RQL+
Sbjct: 123 Y------IPMPHPQVRSLNLSVSVAIGLFEALRQLD 152
>gi|427723601|ref|YP_007070878.1| tRNA/rRNA methyltransferase SpoU [Leptolyngbya sp. PCC 7376]
gi|427355321|gb|AFY38044.1| tRNA/rRNA methyltransferase (SpoU) [Leptolyngbya sp. PCC 7376]
Length = 151
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 105/155 (67%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D +LKRAGLDYWP+V + +H +
Sbjct: 3 QLVLVHPQIPPNTGNIARTCAATETELHLVGPLGFEISDRQLKRAGLDYWPHVKLTLHPS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F +Q+ G RLL ++ RG T++E Y D+L+FGSET GLP + L +C
Sbjct: 63 LDHFLAEHKQRGG--RLLGYSVRGQYTYTEYEYCSDDWLLFGSETQGLPADLLQNCDD-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IP+ +T+VR LNLSVS + ++E RQL
Sbjct: 119 ----TLTIPISKTHVRSLNLSVSAAVGLFEVRRQL 149
>gi|416355657|ref|ZP_11681866.1| RNA methyltransferase [Clostridium botulinum C str. Stockholm]
gi|338195171|gb|EGO87490.1| RNA methyltransferase [Clostridium botulinum C str. Stockholm]
Length = 160
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+S L +VL P+IP NTG I RTC + LHL+ PLGF +DD +KRAGLDYWPY+
Sbjct: 1 MSDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFNIDDKSVKRAGLDYWPYL 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
+++H + F D R+ L+ TK H E++Y++GD+++FG E+SGLP
Sbjct: 61 KLEIHES---FDDMIRKYPDANIYLSTTKEAKYHHDEVNYKEGDFIVFGRESSGLP---- 113
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
D + + IR+PM++T +R LNLS +V I VYEA RQL + ++K
Sbjct: 114 -DYIRDRYIENRIRVPMIKTTMRSLNLSNTVSIVVYEALRQLGFPKMK 160
>gi|307154692|ref|YP_003890076.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7822]
gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
7822]
Length = 155
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 103/157 (65%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
++VVLV PQIP NTG IARTCAA+A LHLVGPLGFQ+ D LKRAGLDYWP V + H
Sbjct: 1 MVRVVLVHPQIPPNTGNIARTCAATATELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+F ++ G RL+ F+ G ++ E S++ D+L+FGSET GLP L C +
Sbjct: 61 PNLEDFLTIHQKFGG--RLIGFSVSGHQSYLEYSFKSDDWLLFGSETQGLPANLLTSCDA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IPM+E VR LNLSVSV + ++EA RQL
Sbjct: 119 ------TVYIPMMEPKVRSLNLSVSVAVGLFEAKRQL 149
>gi|427732321|ref|YP_007078558.1| putative rRNA methylase SpoU family [Nostoc sp. PCC 7524]
gi|427368240|gb|AFY50961.1| putative rRNA methylase SpoU family [Nostoc sp. PCC 7524]
Length = 153
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 102/157 (64%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H +
Sbjct: 3 QVVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ QE R L F+ G+S + ++ D+L+FGSET+GL E L C +
Sbjct: 63 LESFQ--IVHQERGGRWLGFSVGGSSNYIHYQFQPDDWLLFGSETTGLSSEVLSACDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV I ++EA RQL Y
Sbjct: 119 ----TLHIPMAQPGVRSLNLSVSVAIGLFEARRQLGY 151
>gi|414077614|ref|YP_006996932.1| tRNA/rRNA methyltransferase SpoU [Anabaena sp. 90]
gi|413971030|gb|AFW95119.1| tRNA/rRNA methyltransferase SpoU [Anabaena sp. 90]
Length = 153
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 102/159 (64%), Gaps = 8/159 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV H +
Sbjct: 3 QIVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKFHYHDS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ +Q+ G R L F+ RG + ++ D+L+FGSET+GLP L C S
Sbjct: 63 IEVFQSVQKQRGG--RCLGFSVRGDFNYINFEFQADDWLLFGSETAGLPAATLSTCDS-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
T+ IPM E VR LNLSVSV I ++E RQL Y Q
Sbjct: 119 ----TLYIPMYEPGVRSLNLSVSVAIGLFECRRQLGYLQ 153
>gi|443326172|ref|ZP_21054835.1| putative rRNA methylase SpoU family [Xenococcus sp. PCC 7305]
gi|442794236|gb|ELS03660.1| putative rRNA methylase SpoU family [Xenococcus sp. PCC 7305]
Length = 154
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 103/160 (64%), Gaps = 8/160 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
++VVLV PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWP+V + H
Sbjct: 1 MRVVLVHPQIPPNTGNIARTCAATKTELHLVAPLGFEISDRYLKRAGLDYWPHVDLHYHP 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
F +QQEG RL+ FT RG+ + + Y++ D+L+FGSET GLP E L C
Sbjct: 61 NLEAFWQVQQQQEG--RLIGFTVRGSGNYLDYQYQENDWLLFGSETEGLPTEVLDLCDYR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
F I + + VR LNLSVS I ++EA RQL +++
Sbjct: 119 AF------IAIAQPQVRSLNLSVSASIGLFEALRQLRHQK 152
>gi|375307785|ref|ZP_09773072.1| tRNA/rRNA methyltransferase [Paenibacillus sp. Aloe-11]
gi|375080116|gb|EHS58337.1| tRNA/rRNA methyltransferase [Paenibacillus sp. Aloe-11]
Length = 154
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++AE ++ + QEG R T + +S+IS+R GD+L+FG ET GLPPE LL E
Sbjct: 63 SFAEVQEKY--QEG--RFFYATTKANQRYSDISFRDGDFLVFGKETKGLPPE-LLAANPE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T I++PM + VR LNLS S I VYEA RQ+++ L
Sbjct: 118 T----CIKMPMSDK-VRSLNLSNSAAIIVYEALRQMDFPGL 153
>gi|427711747|ref|YP_007060371.1| putative rRNA methylase SpoU family [Synechococcus sp. PCC 6312]
gi|427375876|gb|AFY59828.1| putative rRNA methylase SpoU family [Synechococcus sp. PCC 6312]
Length = 154
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 103/159 (64%), Gaps = 8/159 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVL+ P+IP NTG IAR+CAA+ LHL+ PLGF++ D LKRAG+DYWPYV + H
Sbjct: 3 RVVLIYPEIPPNTGNIARSCAATGTELHLIEPLGFRITDRDLKRAGIDYWPYVDVNCHRC 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W EF + + + G R + F RG + + E+ Y++ D+L+FGSE+SG+PPE C
Sbjct: 63 WEEFHEMAQARGG--RYVGFMARGKTNYWEVRYQETDWLLFGSESSGIPPEIAAVCDVSA 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
F IPM + VR LNLSVS + ++EA RQL + +
Sbjct: 121 F------IPMPQAKVRSLNLSVSAALGLFEAYRQLTFAK 153
>gi|390456747|ref|ZP_10242275.1| tRNA/rRNA methyltransferase [Paenibacillus peoriae KCTC 3763]
Length = 154
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 106/161 (65%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++AE ++ + QEG R T + +S+IS+R GD+L+FG ET GLPPE LL +
Sbjct: 63 SFAEVQEKY--QEG--RFFYATTKANQRYSDISFRDGDFLVFGKETKGLPPE-LLAANPD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T I++PM + VR LNLS S I VYEA RQ+++ L
Sbjct: 118 T----CIKMPMSDK-VRSLNLSNSAAIIVYEALRQMDFPDL 153
>gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
Length = 153
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 104/156 (66%), Gaps = 8/156 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + H
Sbjct: 3 RVVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYHLD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+F+ Y +QQ+G RLL F+ RG S + + +++ D+L+FGSE+ GLP C
Sbjct: 63 LVQFQAYHQQQKG--RLLGFSVRGKSCYGDCKFQEDDWLVFGSESEGLPLTFQEQCDQML 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ IPM +R LNLSVSV + ++EA RQL+
Sbjct: 121 Y------IPMPHPKIRSLNLSVSVAVGLFEALRQLD 150
>gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
Length = 152
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 99/158 (62%), Gaps = 8/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+QVVLV PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWP+V + H
Sbjct: 1 MQVVLVHPQIPPNTGNIARTCAATQTELHLVEPLGFELSDRYLKRAGLDYWPFVHLTCHP 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F ++ G RL+ F G S + + D+L+FGSET GLP E L+ C
Sbjct: 61 DWPSFTQVVAKRGG--RLIGFDTTGESNAFQFKFAADDWLLFGSETDGLPAEVLVACDD- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV I ++EA RQL Y
Sbjct: 118 -----TVYIPMGQPGVRSLNLSVSVAIGLFEARRQLGY 150
>gi|428772015|ref|YP_007163803.1| tRNA/rRNA methyltransferase SpoU [Cyanobacterium stanieri PCC 7202]
gi|428686294|gb|AFZ46154.1| tRNA/rRNA methyltransferase (SpoU) [Cyanobacterium stanieri PCC
7202]
Length = 150
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
++VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + H+
Sbjct: 3 KIVLVHPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPHVALSYHND 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
EF ++ G RL+ ++ RG + + Y D+L+FGSET+GLPPE L C +
Sbjct: 63 IDEFLQVAHRRGG--RLIGYSVRGKKNYLDCEYLTDDWLLFGSETNGLPPELLAKCHLTS 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
F IPM + VR LNLSVSV + ++E RQL
Sbjct: 121 F------IPMEQGKVRSLNLSVSVAVVLFETLRQL 149
>gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
[Clostridium botulinum C str. Eklund]
gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
[Clostridium botulinum C str. Eklund]
Length = 160
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 8/162 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LHL+ PLGF++DD LKRAGLDYWP++ +++H
Sbjct: 7 LNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHLDVEIHE 66
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F D ++ L+ TK H E++Y+KGD+++FG E+SGLP D +
Sbjct: 67 S---FDDMIKKYPNANIYLSTTKEPKYHHDEVNYKKGDFIVFGRESSGLP-----DYIRD 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM++T R LNLS +V I YEA RQL + +K
Sbjct: 119 KYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQLGFPDMK 160
>gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
Length = 151
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 106/157 (67%), Gaps = 12/157 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VLV PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + +
Sbjct: 3 QLVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPD 62
Query: 140 WAEFRDYFRQQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++F Q + + RLL ++ RGTS ++E +Y+ D+L+FGSET GLP E L C +
Sbjct: 63 L----EHFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
T+ IP+ +T+VR LNLSVS + ++E RQL
Sbjct: 119 ------TLTIPINKTHVRSLNLSVSAAVGLFEVRRQL 149
>gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 150
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 107/157 (68%), Gaps = 9/157 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVLVSPQIPGNTG IARTCAAS LHLVGPLGF ++D++LKRAGLDY V ++VH W
Sbjct: 1 VVLVSPQIPGNTGTIARTCAASRVPLHLVGPLGFTLEDSQLKRAGLDY--CVCVRVHDDW 58
Query: 141 AEFRDYFRQQEGEK-RLLAFTKRGTSTHSEI-SYRKGDYLIFGSETSGLPPEALLDCTSE 198
F Y+ G RL+A K G H+E +Y GD+L+FG+ET+GLP EA C
Sbjct: 59 DAFYAYWSVDLGAPGRLVA--KFGARPHAEEGAYLPGDWLLFGAETTGLPDEAHDACARS 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
GG RIP+ E +VR LNL+VS G+ VYEA RQ++
Sbjct: 117 ---GGIRRIPIDEDHVRSLNLAVSAGVGVYEAIRQID 150
>gi|420156077|ref|ZP_14662926.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Clostridium sp. MSTE9]
gi|394758113|gb|EJF41057.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Clostridium sp. MSTE9]
Length = 164
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 104/161 (64%), Gaps = 11/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +V+V P+IP NTG +ARTCAA+ LHLVGP+GF +DD KLKRAGLDYW + I+ ++
Sbjct: 4 LNIVMVEPEIPQNTGNVARTCAATGATLHLVGPMGFTIDDKKLKRAGLDYWHLLDIRYYA 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T D+F+Q G+ F+ + TH+++SY YL+FG ET+GLP E L +
Sbjct: 64 T---LSDFFKQNTGD--FFYFSTKAPRTHTQVSYPDNSYLVFGKETAGLPEELL-----Q 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM+E R LNLS +V I VYEA RQ +Y +L
Sbjct: 114 KNPDSVVRIPMLEE-ARSLNLSNAVAIGVYEALRQWDYPRL 153
>gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase SpoU [Marinithermus hydrothermalis DSM
14884]
gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
DSM 14884]
Length = 159
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 102/158 (64%), Gaps = 11/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
++VVL P+IP N G IARTCAA LHLV P GF+ D ++KRAGLDYWP+V +H
Sbjct: 8 VRVVLYQPEIPQNVGNIARTCAAVGAELHLVRPFGFRWGDPRMKRAGLDYWPHVRYVLHD 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
TWA F + Q+ RL AFT +G ++E++YR GDYL+FG ET GLPPE L E
Sbjct: 68 TWAAFLETLGPQD---RLFAFTTKGERRYTEVAYRPGDYLLFGPETRGLPPEIL-----E 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ I +P VR LNLSV+VG+AVYEA RQ +
Sbjct: 120 VWPRLVIPMP---GPVRSLNLSVAVGVAVYEALRQAGF 154
>gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925]
gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum
BKT015925]
Length = 160
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 102/162 (62%), Gaps = 8/162 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LHL+ PLGF +DD +KRAGLDYWP++ +++H
Sbjct: 7 LNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFSIDDKSVKRAGLDYWPHLKLEIHE 66
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F D R+ L+ TK H E++Y++GD+++FG E+SGLP D +
Sbjct: 67 S---FDDMIRKYPDANIYLSTTKGAKYHHDEVNYKEGDFIVFGRESSGLP-----DYIRD 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM++T +R LNLS +V I YEA RQL + ++K
Sbjct: 119 KYVENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQLGFPEMK 160
>gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
1873]
gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
1873]
Length = 160
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 8/168 (4%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+S L +VL P+IP NTG I RTC + LHL+ PLGF +DD +KRAGLDYWPY+
Sbjct: 1 MSDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFNIDDKSVKRAGLDYWPYL 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
+++H + F D R+ L+ TK H E++Y++G +++FG E+SGLP
Sbjct: 61 KLEIHES---FDDMIRKYPDANIYLSTTKEAKYHHDEVNYKEGVFIVFGRESSGLP---- 113
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
D + + IR+PM++T +R LNLS +V I YEA RQL + ++K
Sbjct: 114 -DYIRDRYIENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQLGFPEMK 160
>gi|427413287|ref|ZP_18903479.1| RNA methyltransferase, TrmH family, group 2 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716103|gb|EKU79089.1| RNA methyltransferase, TrmH family, group 2 [Veillonella ratti
ACS-216-V-Col6b]
Length = 163
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 100/163 (61%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VLV P+IPGNTG IAR CAA+ LHLV PLGF+++D LKRAGLDYW V ++VH
Sbjct: 1 MEIVLVEPEIPGNTGNIARLCAANHMTLHLVKPLGFKLEDKYLKRAGLDYWDLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E D + ++R T + T++E+ Y+ GD L+FG ET GLP E L
Sbjct: 61 NLQEVYDKY----PDRRYFYATTKAKHTYAEVEYQIGDMLVFGKETKGLPEELLAANYDH 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
TIRIPM+ R LNLS SV I YEA RQLN+ LK
Sbjct: 117 -----TIRIPMIAE-ARSLNLSNSVAIIAYEAMRQLNFPDLKN 153
>gi|374322991|ref|YP_005076120.1| tRNA/rRNA methyltransferase [Paenibacillus terrae HPL-003]
gi|357202000|gb|AET59897.1| tRNA/rRNA methyltransferase [Paenibacillus terrae HPL-003]
Length = 154
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 107/161 (66%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++AE ++ + QEG R T + +S+I+++ GD+L+FG ET GLPPE LL ++
Sbjct: 63 SFAEVQEKY--QEG--RFFYATTKANQRYSDIAFQDGDFLVFGKETKGLPPE-LLAANTD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T I++PM + VR LNLS S I VYEA RQ+++ L
Sbjct: 118 T----CIKMPMSDK-VRSLNLSNSAAIIVYEALRQMDFPGL 153
>gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
E681]
Length = 154
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 107/161 (66%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++AE ++ + QEG R T + +S+I+++ GD+L+FG ET GLPPE LL ++
Sbjct: 63 SFAEVQEKY--QEG--RFFYATTKANQRYSDIAFQDGDFLVFGKETKGLPPE-LLAANAD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T I++PM + VR LNLS S I VYEA RQ+++ L
Sbjct: 118 T----CIKMPMSDK-VRSLNLSNSAAIIVYEALRQMDFPGL 153
>gi|428201215|ref|YP_007079804.1| putative rRNA methylase SpoU family [Pleurocapsa sp. PCC 7327]
gi|427978647|gb|AFY76247.1| putative rRNA methylase SpoU family [Pleurocapsa sp. PCC 7327]
Length = 153
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 99/157 (63%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
++VLVSPQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWP+V + H
Sbjct: 3 RLVLVSPQIPPNTGNIARTCAATGTELHLVGPLGFELSDRYLKRAGLDYWPWVNLHYHID 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F RQ G RL+ F+ G + ++ D+L+FGSET GLPP L C +
Sbjct: 63 LQAFETVHRQLGG--RLIGFSVSGRFNYIHYQFQDDDWLLFGSETEGLPPAVLEACDA-- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVS + ++EA RQL Y
Sbjct: 119 ----TVYIPMEQPKVRSLNLSVSAAVGLFEARRQLGY 151
>gi|269798386|ref|YP_003312286.1| TrmH family RNA methyltransferase [Veillonella parvula DSM 2008]
gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
ATCC 17745]
gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
3_1_44]
gi|417001236|ref|ZP_11941150.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
ACS-068-V-Sch12]
gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
DSM 2008]
gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
ATCC 17745]
gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
3_1_44]
gi|333975719|gb|EGL76598.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
ACS-068-V-Sch12]
Length = 161
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 101/163 (61%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + + ++R T + THSE+ Y GD L+FG ET GL PE+LLD +
Sbjct: 61 NIQELYEKY----PDRRYFYATTKAKHTHSEVKYEIGDMLVFGPETRGL-PESLLDGKED 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
T IRIPMV+ R LNLS +V I YE RQL+Y LK
Sbjct: 116 T----CIRIPMVDE-ARSLNLSNAVAIIAYEGMRQLDYPDLKA 153
>gi|426402271|ref|YP_007021242.1| rRNA methyltransferase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858939|gb|AFX99974.1| rRNA methyltransferase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 160
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
L+ K ++VL+ P+IP NTG I RTC + C LH+VG +GF+++DT LKRAGLDYWP++
Sbjct: 2 LNSQKLFRIVLIEPEIPQNTGNIGRTCVGTNCELHIVGKMGFEINDTNLKRAGLDYWPHL 61
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
H T F D+++ E R+ FT + T+ E Y+ GD+ +FG ET GL PE L
Sbjct: 62 TWYRHET---FEDWWKHVEDPSRIWLFTTKTQRTYFEPQYQSGDWFVFGKETKGLDPEFL 118
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ T+ IPM+ R LNL+ SV IA YE RQ+ +
Sbjct: 119 QKHPEQ-----TVTIPMIGEGARSLNLATSVAIAAYEGLRQVQF 157
>gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Coleofasciculus chthonoplastes
PCC 7420]
gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Coleofasciculus chthonoplastes
PCC 7420]
Length = 153
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 98/159 (61%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVLV PQIP NTG +ARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV H
Sbjct: 1 MLRVVLVCPQIPPNTGNVARTCAATDTELHLVGPLGFEISDRYLKRAGLDYWPYVKFHYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T F ++ G R + F+ G ++ + ++ D+L FGSET GL P L C
Sbjct: 61 ETLEAFNQVSQKLGG--RWIGFSTSGQYSYVQFQFQPNDWLFFGSETQGLSPSVLTRC-- 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G T+ IPM + VR LNLSVS + ++EA RQL Y
Sbjct: 117 ----GATVVIPMTQPGVRSLNLSVSAALGLFEARRQLGY 151
>gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
6_1_27]
gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
6_1_27]
Length = 161
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + + +R T + THSE+ Y GD L+FG ET GL PE+LLD +
Sbjct: 61 NIQELYEKYPN----RRYFYATTKAKHTHSEVKYEIGDMLVFGPETRGL-PESLLDGKED 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T IRIPMV+ R LNLS +V I YE RQL+Y LK +
Sbjct: 116 T----CIRIPMVDE-ARSLNLSNAVAIIAYEGMRQLDYPDLKAEGN 156
>gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7424]
gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
Length = 153
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+++VLV PQIP NTG IARTCAA+A LHLVGPLGF++ D LKRAGLDYWP V + H
Sbjct: 1 MIRLVLVHPQIPPNTGNIARTCAATATELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
F ++ G K + F+ G + + GD+L+FGSET GLP L C +
Sbjct: 61 PNLEIFEQVHQKIGGRK--IGFSVSGQENFLKFQFEVGDWLLFGSETDGLPANVLASCDA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+ IPM + VR LNLSVSV + ++EA RQL Y
Sbjct: 119 ------TVYIPMAQPKVRSLNLSVSVAVGLFEAKRQLGY 151
>gi|428319456|ref|YP_007117338.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria nigro-viridis PCC
7112]
gi|428243136|gb|AFZ08922.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria nigro-viridis PCC
7112]
Length = 153
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 100/156 (64%), Gaps = 8/156 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VL+ PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 3 QLVLIHPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSHED 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A F Y RQQ G R + F+ G +++E ++ D+L+FGSET G+P L C +
Sbjct: 63 LAAFGAY-RQQRG-GRSIGFSTGGRCSYAEFQFQPSDWLMFGSETVGIPQFVLDACDATV 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
F IPM + VR LNLSVS + ++EA RQL
Sbjct: 121 F------IPMSQPGVRSLNLSVSAAVGLFEAKRQLG 150
>gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
V453]
gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
V453]
Length = 154
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 99/158 (62%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + + R T + T + +I Y+ GD+L+FG ET GLPPE LL SE
Sbjct: 63 SFEELKALY----PDGRYFYATTKATKRYMDIEYQDGDFLVFGKETKGLPPE-LLAANSE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IR+PM + VR LNLS S I VYEA RQLN+
Sbjct: 118 ----HCIRMPMTDK-VRSLNLSNSAAIMVYEALRQLNF 150
>gi|374603166|ref|ZP_09676149.1| tRNA/rRNA methyltransferase [Paenibacillus dendritiformis C454]
gi|374391180|gb|EHQ62519.1| tRNA/rRNA methyltransferase [Paenibacillus dendritiformis C454]
Length = 155
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 102/161 (63%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLKRAGLDYWYAVHIEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E D Q + R T + +S+ S++ GD+L+FG ET GLPPE L++ E
Sbjct: 63 SFQEVLD----QYADSRFFYATTKADKCYSDFSFQDGDFLVFGKETKGLPPE-LIEANRE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T +R+PM + VR LNLS S I VYEA RQL++ L
Sbjct: 118 T----CMRMPMTDK-VRSLNLSNSAAIIVYEALRQLDFPGL 153
>gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
7942]
gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
6301]
gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
7942]
Length = 156
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 8/157 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
QVVL P+IP NTG IARTCAA+ LHL+ PLGF++ D LKRAGLDYWPYV + H
Sbjct: 3 QVVLYQPEIPPNTGNIARTCAATDTPLHLIEPLGFELSDRYLKRAGLDYWPYVQLTTHPD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W+ FR +QQ G RL+AFT +G + + ++ D+L+FG ETSGLP + L C
Sbjct: 63 WSVFRQQQQQQGG--RLIAFTTKGELNYLDCDFQATDWLLFGRETSGLPEDVLASCDHR- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIP + VR LNLSVSV I ++EA RQ+ +
Sbjct: 120 -----VRIPTPQAGVRSLNLSVSVAIGLFEARRQVYF 151
>gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT]
gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT]
Length = 160
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LHL+ PLGF++DD LKRAGLDYWP++ ++VH
Sbjct: 7 LNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHLDVEVHE 66
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F D ++ L+ TK H E+ Y+ GD+++FG E+SGLP + +
Sbjct: 67 S---FDDMIKKYPDANIYLSTTKEAKYHHDEVKYKTGDFIVFGRESSGLP-----EYIRD 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM++T R LNLS +V I YEA RQL + +K
Sbjct: 119 RYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQLGFPDMK 160
>gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
Length = 161
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 102/166 (61%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + ++R T + THSE+ Y GD L+FG E+ GL PE+LL+ E
Sbjct: 61 NIQELYAKY----PDRRYFYATTKAKHTHSEVKYEIGDMLVFGPESRGL-PESLLEGVEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T IRIPMV+ R LNLS +V I YEA RQL+Y LK +
Sbjct: 116 T----CIRIPMVDE-ARSLNLSNAVAIIAYEAMRQLDYPDLKAEGN 156
>gi|428771298|ref|YP_007163088.1| tRNA/rRNA methyltransferase SpoU [Cyanobacterium aponinum PCC
10605]
gi|428685577|gb|AFZ55044.1| tRNA/rRNA methyltransferase (SpoU) [Cyanobacterium aponinum PCC
10605]
Length = 150
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVLV PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWP+V + HS+
Sbjct: 3 RVVLVHPQIPPNTGNIARTCAATETELHLVAPLGFEISDRTLKRAGLDYWPHVKLTYHSS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+EF + +++ G R++ + RG + + Y++ D+L+FGSE GLPP L +C +
Sbjct: 63 ASEFLQFAKEKGG--RIIGLSVRGKENYLKCQYQEDDWLLFGSEIDGLPPFVLKECDLTS 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ I M VR LNLSVSV + ++E+ RQL+
Sbjct: 121 Y------ITMKSNNVRSLNLSVSVSVVLFESIRQLS 150
>gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
HGF5]
gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
HGF5]
Length = 187
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 100/161 (62%), Gaps = 10/161 (6%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
N L +VLV P+IP NTG IARTCAA+ LHLV PLGF DD LKRAGLDYW V I+
Sbjct: 33 NMALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIE 92
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
H ++ E + + E R T + T + +I Y+ GD+L+FG ET GLPPE LL
Sbjct: 93 YHDSFEELQALY----PEGRYFYATTKATKRYMDIEYQDGDFLVFGKETKGLPPE-LLAA 147
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+E IR+PM + VR LNLS S I VYEA RQL++
Sbjct: 148 NAEH----CIRMPMTDK-VRSLNLSNSAAIMVYEALRQLDF 183
>gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-134-V-Col7a]
gi|401680563|ref|ZP_10812478.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Veillonella sp. ACP1]
gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-134-V-Col7a]
gi|400218471|gb|EJO49351.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Veillonella sp. ACP1]
Length = 161
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + ++R T + HS++ + GD L+FG ET GL PE+LL+ E
Sbjct: 61 NIEELYAKY----PDRRYFYATTKAKHVHSDVKFEIGDMLVFGPETRGL-PESLLEGNEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T IRIPMVE R LNLS SV I YEA RQL+Y LK +
Sbjct: 116 T----CIRIPMVEE-ARSLNLSNSVAIIAYEAMRQLDYPDLKEVGN 156
>gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-049-V-Sch6]
gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
ACS-049-V-Sch6]
Length = 161
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + ++R T + HS++ + GD L+FG ET GL PE+LL+ E
Sbjct: 61 NIEELYAKY----PDRRYFYATTKAKHVHSDVKFEIGDMLVFGPETRGL-PESLLEGNEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T IRIPMVE R LNLS SV I YEA RQL+Y LK +
Sbjct: 116 T----CIRIPMVEE-ARSLNLSNSVAIIAYEAMRQLDYPDLKEVGN 156
>gi|384440599|ref|YP_005655323.1| tRNA/rRNA methyltransferase [Thermus sp. CCB_US3_UF1]
gi|359291732|gb|AEV17249.1| tRNA/rRNA methyltransferase [Thermus sp. CCB_US3_UF1]
Length = 147
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 99/158 (62%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N G IART AA LHL+ PLGF++ D +LKRAGLDYWP+V ++V
Sbjct: 1 MLHLVLYQPEIPQNAGNIARTAAAIGFPLHLIRPLGFRLGDPRLKRAGLDYWPHVDLRVW 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
TW F + R+ AF+ RGT E S+R GDYL+FG ET GLPPE LL S
Sbjct: 61 DTWEAFLEAL---PPGARVWAFSARGTKELYEASFRPGDYLLFGPETRGLPPEILLRFPS 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+RIPM VR LNL+V+VG+A YEA RQ+
Sbjct: 118 -------LRIPMPGP-VRSLNLAVAVGVAAYEAYRQVR 147
>gi|421860146|ref|ZP_16292304.1| predicted rRNA methylase [Paenibacillus popilliae ATCC 14706]
gi|410830350|dbj|GAC42741.1| predicted rRNA methylase [Paenibacillus popilliae ATCC 14706]
Length = 155
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 102/161 (63%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD L+RAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLRRAGLDYWYAVHIQYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E D Q + R T + +S+ S++ GD+LIFG ET GLPPE L++ E
Sbjct: 63 SFQEVLD----QYADSRFFYATTKADKCYSDFSFQNGDFLIFGKETKGLPPE-LIEENRE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T +R+PM + VR LNLS S I VYEA RQL++ L
Sbjct: 118 T----CMRMPMTDK-VRSLNLSNSAAIIVYEALRQLDFPGL 153
>gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
Length = 160
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 8/160 (5%)
Query: 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKV 136
K ++VL+ P+IP NTG I RTC + C LH+VG +GF+++DT LKRAGLDYWP++
Sbjct: 6 KLFRIVLIEPEIPQNTGNIGRTCVGTNCELHIVGKMGFEINDTNLKRAGLDYWPHLTWYR 65
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
H T F D+++ E R+ FT + T+ E Y+ GD+ +FG ET GL PE L
Sbjct: 66 HET---FEDWWKHVEDPSRIWLFTTKTQRTYFEPQYQSGDWFVFGKETKGLDPEFLQKHP 122
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ T+ IPM+ R LNL+ SV IA YE RQ+ +
Sbjct: 123 QQ-----TVTIPMIGEGARSLNLATSVAIAAYEGLRQVRF 157
>gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa
SC2]
gi|386040083|ref|YP_005959037.1| TrmH family RNA methyltransferase [Paenibacillus polymyxa M1]
gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
SC2]
gi|343096121|emb|CCC84330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
M1]
Length = 154
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 104/161 (64%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++AE ++ + Q G R T + +S+I ++ GD+L+FG ET GLPPE LL +
Sbjct: 63 SFAEVQEKY--QAG--RFFYATTKAKQQYSDIKFQDGDFLVFGKETKGLPPE-LLAANPD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T I++PM + VR LNLS S I VYEA RQL++ L
Sbjct: 118 T----CIKMPMSDK-VRSLNLSNSAAIIVYEALRQLDFPGL 153
>gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
taxon 158 str. F0412]
Length = 161
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 103/166 (62%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + + ++R T + THSE++Y GD L+FG E+ GL PE+LL+ +
Sbjct: 61 NIEELYEKY----PDRRYFYATTKAKHTHSEVNYEIGDMLVFGPESRGL-PESLLEGKED 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T IRIPMV+ R LNLS +V I YE RQL+Y LK +
Sbjct: 116 T----CIRIPMVDE-ARSLNLSNAVAIIAYEGMRQLDYPDLKAEGN 156
>gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205]
Length = 157
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 13/161 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVL P+IP NTG +AR+CAAS LHL+ PLGFQ+DD LKRAGLDYWP+V ++ H+
Sbjct: 3 RVVLFQPEIPPNTGNVARSCAASCTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERHAN 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W +F + RQ+ G RLLA ++ + + I YR D+L+FG E+SGLP E L
Sbjct: 63 WEQFLEKRRQRGG--RLLALSRHASEPYHRIQYRADDWLLFGRESSGLPGELLEHVDQRL 120
Query: 200 FGGGTIRIPMVETY-----VRCLNLSVSVGIAVYEAARQLN 235
IPM + VR LNL+ SVG+ ++EA RQL
Sbjct: 121 L------IPMPGSVDQGGGVRSLNLATSVGVVLFEALRQLE 155
>gi|342213742|ref|ZP_08706461.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
taxon 780 str. F0422]
gi|341597330|gb|EGS39889.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
taxon 780 str. F0422]
Length = 162
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VLV P+IPGNTG IAR CAA+ LHLV PLGF ++D LKRAGLDYW V +K+H
Sbjct: 1 MEIVLVEPEIPGNTGNIARLCAANHMTLHLVEPLGFSIEDKYLKRAGLDYWHLVDVKIHK 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + ++ ++R T + TH+E+ Y GD L+FG ET GL PE ++ +
Sbjct: 61 SLDEVYEQYK----DRRFWYATTKAAHTHAEVQYEIGDMLVFGKETKGL-PEEIVAANPD 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
T IRIPM++ R LNLS +V I YEA RQL++ L+
Sbjct: 116 T----CIRIPMIDE-ARSLNLSNAVAIIAYEAMRQLDFPDLQA 153
>gi|429761010|ref|ZP_19293453.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
KON]
gi|429175909|gb|EKY17324.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
KON]
Length = 161
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 100/166 (60%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IPGNTG IAR CAA+ LHL+ PLGF +DD +KRAGLDYW V ++VH
Sbjct: 1 MEIVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + ++R T + HS++ + GD L+FG ET GL PE+LL+ E
Sbjct: 61 NIEELYAKY----PDRRYFYATTKAKHVHSDVKFEIGDMLVFGPETRGL-PESLLEGNEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
IRIPMVE R LNLS SV I YEA RQL+Y LK +
Sbjct: 116 ----ACIRIPMVEE-ARSLNLSNSVAIIAYEAMRQLDYPDLKEVGN 156
>gi|333923897|ref|YP_004497477.1| TrmH family RNA methyltransferase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749458|gb|AEF94565.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 152
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTC+ + LHLV PLGF DD LKRAGLDYW + + H
Sbjct: 1 MHIVLVEPEIPANTGNIARTCSITGASLHLVRPLGFSTDDRHLKRAGLDYWHLLDLHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E ++Q R FT +G H + YR D+L+FG ET+GLP E L
Sbjct: 61 SLQE----LKEQYPNGRFWYFTTKGGKPHHRVQYRPDDFLVFGKETAGLPREVLSQNPDY 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+ET VR LNLS SV IA+YEA RQL + +K
Sbjct: 117 -----CLRIPMLET-VRSLNLSNSVAIALYEALRQLGFPNMK 152
>gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
nigrificans DSM 574]
gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
nigrificans DSM 574]
Length = 152
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTC+ + LHLV PLGF DD LKRAGLDYW + + H
Sbjct: 1 MHIVLVEPEIPANTGNIARTCSVTGASLHLVRPLGFSTDDRHLKRAGLDYWHLLDLHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E ++Q R FT +G H + YR D+L+FG ET+GLP E L
Sbjct: 61 SLQE----LQEQYPNGRFWYFTTKGGKPHHRVQYRPDDFLVFGKETAGLPREVLSQNPDY 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+ET VR LNLS SV IA+YEA RQL + +K
Sbjct: 117 -----CLRIPMLET-VRSLNLSNSVAIALYEALRQLGFPNMK 152
>gi|410697945|gb|AFV77013.1| putative rRNA methylase SpoU family [Thermus oshimai JL-2]
Length = 151
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 102/158 (64%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG +ART AA LHL+ PLGF++ D +L+RAGLDYWP+V + VH
Sbjct: 1 MLHLVLYQPEIPQNTGNVARTAAALGVPLHLIRPLGFRLGDPRLRRAGLDYWPHVRLFVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
TW F EG R+LAF+ RG E +R+GDYL+FG ET GLP E +LD
Sbjct: 61 DTWEAFLGSL--PEG-ARVLAFSARGEKDLYEAEFREGDYLLFGPETRGLPQE-ILDALP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
++RIPM VR LNL+V+VG+A YEA RQL+
Sbjct: 117 ------SLRIPMPGP-VRSLNLAVAVGVAAYEAYRQLS 147
>gi|404372042|ref|ZP_10977343.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp.
7_2_43FAA]
gi|226911822|gb|EEH97023.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp.
7_2_43FAA]
Length = 153
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 105/162 (64%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ P+GF++DD ++KRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTNSTLHLIKPMGFKIDDKQVKRAGLDYWSELKLEMHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ EF + G+KR+ T G + E+S+++GD+++FG E+SG+P E
Sbjct: 63 SYEEFMKKY----GDKRIFLATTHGGVHYDEVSFKEGDFIMFGRESSGVPEEV-----HN 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ G IR+PM++T R LNLS +V I YEA RQ+ + ++K
Sbjct: 114 SHEG--IRVPMIKTSTRSLNLSNTVAIVAYEALRQIGFPEMK 153
>gi|398797299|ref|ZP_10556622.1| rRNA methylase, putative, group 2 [Pantoea sp. GM01]
gi|398103419|gb|EJL93589.1| rRNA methylase, putative, group 2 [Pantoea sp. GM01]
Length = 157
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY Y +K H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEYTALKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +R+ A T +GT HS +SY+KGDYL+FG E+ GLP E L +
Sbjct: 61 ANYAA----FIAAENPQRMFALTTKGTPAHSAVSYQKGDYLVFGPESRGLPAEMLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 EQ----KIRIPMMAE-SRSMNLSNAVSVVVYEAWRQLDY 150
>gi|295697073|ref|YP_003590311.1| TrmH family RNA methyltransferase [Kyrpidia tusciae DSM 2912]
gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Kyrpidia tusciae DSM
2912]
Length = 157
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 100/159 (62%), Gaps = 10/159 (6%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
+ + VVLV P+IP NTG +ARTCAA+ LHLV PLGF+VDD L+RAGLDYW +V +
Sbjct: 2 ERRPFHVVLVEPEIPPNTGNVARTCAATGTVLHLVRPLGFEVDDRHLRRAGLDYWHWVHV 61
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
+ H F D ++ E R F+ +G ++E+ YR GD+L+FG ET GLP D
Sbjct: 62 EYHD---RFEDLL-EEHPEGRFFYFSTKGKRQYAEVRYRPGDFLVFGKETRGLP-----D 112
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E F T+RIPM +R LNLS SV +A++EA RQ
Sbjct: 113 ALLERFPEQTLRIPM-RPDIRSLNLSNSVALALFEALRQ 150
>gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803]
gi|383322957|ref|YP_005383810.1| hypothetical protein SYNGTI_2048 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326126|ref|YP_005386979.1| hypothetical protein SYNPCCP_2047 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492010|ref|YP_005409686.1| hypothetical protein SYNPCCN_2047 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437278|ref|YP_005652002.1| hypothetical protein SYNGTS_2049 [Synechocystis sp. PCC 6803]
gi|451815370|ref|YP_007451822.1| hypothetical protein MYO_120680 [Synechocystis sp. PCC 6803]
gi|3915412|sp|P74516.1|TRML_SYNY3 RecName: Full=Putative tRNA (cytidine(34)-2'-O)-methyltransferase;
AltName: Full=tRNA
(cytidine/uridine-2'-O-)-methyltransferase
gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803]
gi|339274310|dbj|BAK50797.1| hypothetical protein SYNGTS_2049 [Synechocystis sp. PCC 6803]
gi|359272276|dbj|BAL29795.1| hypothetical protein SYNGTI_2048 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275446|dbj|BAL32964.1| hypothetical protein SYNPCCN_2047 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278616|dbj|BAL36133.1| hypothetical protein SYNPCCP_2047 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407961409|dbj|BAM54649.1| hypothetical protein BEST7613_5718 [Bacillus subtilis BEST7613]
gi|451781339|gb|AGF52308.1| hypothetical protein MYO_120680 [Synechocystis sp. PCC 6803]
Length = 153
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+++VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ EF ++R Q G LL F+ GT + +Y+ D+L+ GSET GL P+ + D ++
Sbjct: 61 NSCEEFITHWRGQGGN--LLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLST 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ + IPM + VR LNL+ S IA++EA RQL
Sbjct: 118 Q-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149
>gi|443475379|ref|ZP_21065331.1| tRNA/rRNA methyltransferase (SpoU) [Pseudanabaena biceps PCC 7429]
gi|443019826|gb|ELS33864.1| tRNA/rRNA methyltransferase (SpoU) [Pseudanabaena biceps PCC 7429]
Length = 149
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 99/157 (63%), Gaps = 11/157 (7%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
LQV L+ P+IP NTG IARTCAA+ LHLV PLGF+++D +LKRAG+DYW YV + VH
Sbjct: 1 MLQVALIYPEIPPNTGNIARTCAATNTHLHLVEPLGFEINDRQLKRAGIDYWEYVNVTVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ RQ + R + F+ RG + E ++ GD+L+FGSE+ GLP E +++ +
Sbjct: 61 PN----IESLRQASQDARWICFSTRGATNFREFQFQDGDWLLFGSESKGLPEEVVINNPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ IPM VR LNLSVS + ++EA RQL
Sbjct: 117 -------VYIPMEHPKVRSLNLSVSAALGLFEARRQL 146
>gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 153
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 97/156 (62%), Gaps = 10/156 (6%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV P+IP NTG IARTCAA+ LHLV PLGF +D LKRAGLDYW V + H +
Sbjct: 4 IVLVEPEIPYNTGNIARTCAATGSTLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYHENF 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
E R+ + E R + +G + E+SY+ GD+L+FG ET GLP E LL+ E
Sbjct: 64 QELREKY----PEGRFFYLSTKGKRYYHEVSYKPGDFLVFGKETQGLPQE-LLEANKEF- 117
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T RIPM+ +R LNLS +V I VYEA RQL +
Sbjct: 118 ---TFRIPMLPQ-IRSLNLSNTVAIVVYEALRQLQF 149
>gi|320451508|ref|YP_004203604.1| TrmH family RNA methyltransferase [Thermus scotoductus SA-01]
gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
SA-01]
Length = 149
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 102/158 (64%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG IART AA LHL+ PLGF++ D +LKRAGLDYWP+V +++H
Sbjct: 1 MLHLVLFQPEIPQNTGNIARTAAALGWPLHLIRPLGFRLSDPRLKRAGLDYWPHVDLRLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
TW F ++ R+ AF+ RG + +S++ GDYL+FG ET GLPPE L
Sbjct: 61 DTWEAF---WQSLPPGARVWAFSARGDTCLYGVSFQPGDYLLFGPETRGLPPEVL----- 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
F G + IPM VR LNL+V+VG+A YEA RQL+
Sbjct: 113 TLFPG--VYIPM-PGLVRSLNLAVAVGVAAYEAYRQLH 147
>gi|430750868|ref|YP_007213776.1| rRNA methylase [Thermobacillus composti KWC4]
gi|430734833|gb|AGA58778.1| rRNA methylase, putative, group 2 [Thermobacillus composti KWC4]
Length = 154
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 101/162 (62%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IAR+CAA+ LHLV PLGF+ DD LKRAGLDYWP V ++ H
Sbjct: 3 LHIVLVEPEIPANTGNIARSCAATGTHLHLVHPLGFRTDDASLKRAGLDYWPAVHVEHHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R++ + R + R +++ +R GD+ +FG ET GLP E LLD E
Sbjct: 63 SFEE----VRKKYPDGRFFFTSTRAVKRYTDFEFRDGDFFVFGKETKGLPQE-LLDANPE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +R+P+ + VR LNLS S I +YEA RQL + ++
Sbjct: 118 T----CMRLPITDK-VRSLNLSNSAAIVLYEALRQLGFPNMR 154
>gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101]
Length = 160
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 103/161 (63%), Gaps = 13/161 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
++VL P+IP NTG +ARTCAA+ LHL+ PLGF++ D LKRAGLDYWP+V + H+
Sbjct: 3 RLVLFQPEIPPNTGNVARTCAATCTELHLIEPLGFEISDRTLKRAGLDYWPWVNLHRHAD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
WA FR QQ RLLA ++ G+ ++E++Y+ D+L+FG ETSGLP E + D +
Sbjct: 63 WAAFR--LEQQRRGGRLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPLEVVADADA-- 118
Query: 200 FGGGTIRIPMVETY-----VRCLNLSVSVGIAVYEAARQLN 235
+ IPM + VR LNL+ + G+ ++EA RQL
Sbjct: 119 ----CLAIPMPGSVDHGGGVRSLNLATAAGVVLFEALRQLQ 155
>gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister
microaerophilus UPII 345-E]
gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister
microaerophilus UPII 345-E]
gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
Length = 170
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 97/165 (58%), Gaps = 10/165 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG I+R CAA LHLV PLGF +DD LKRAGLDYW ++ I +H
Sbjct: 1 MHIVLVEPEIPGNTGNISRLCAAEHLTLHLVEPLGFSIDDKHLKRAGLDYWKFLDIHIHK 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ + + KR T + +++ISY++ D L+FG ET GLP E LL+
Sbjct: 61 NFESVKQMLKG----KRFFYNTTKAKHVYTDISYKEDDVLVFGKETKGLPEELLLENQD- 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTAS 243
IRIPMVE R LNLS +V I EA RQ + +LK +
Sbjct: 116 ----SCIRIPMVEE-ARSLNLSNAVAIVALEALRQTGFPELKKGN 155
>gi|334117330|ref|ZP_08491422.1| tRNA/rRNA methyltransferase (SpoU) [Microcoleus vaginatus FGP-2]
gi|333462150|gb|EGK90755.1| tRNA/rRNA methyltransferase (SpoU) [Microcoleus vaginatus FGP-2]
Length = 153
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 99/156 (63%), Gaps = 8/156 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
Q+VL+ PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 3 QLVLIHPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHCHED 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A F RQQ G R + F+ G ++++ ++ D+L+FGSET G+P L C +
Sbjct: 63 LAAFLAC-RQQRG-GRSIGFSTGGRCSYAQFQFQPSDWLMFGSETVGIPQFVLDACDATV 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
F IPM + VR LNLSVS + ++EA RQL
Sbjct: 121 F------IPMSQPGVRSLNLSVSAAVGLFEAKRQLG 150
>gi|398796122|ref|ZP_10555750.1| rRNA methylase, putative, group 2 [Pantoea sp. YR343]
gi|398203974|gb|EJM90786.1| rRNA methylase, putative, group 2 [Pantoea sp. YR343]
Length = 157
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY Y +K H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEYTALKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +R+ A T +GT HS +SY+KGDYL+FG E+ GLP + L +
Sbjct: 61 ANYAA----FLATEAPQRMFALTTKGTPAHSAVSYQKGDYLVFGPESRGLPADILNALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 EQ----KIRIPMMAE-SRSMNLSNAVSVVVYEAWRQLDY 150
>gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
Length = 161
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 99/159 (62%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAQIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ EF + E RL A T +GT HS++++ GDYL+FG ET G+ P ++LD
Sbjct: 61 KTFNEFLN----TEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGI-PMSILDNLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T IRIPM+E R +NLS +V + VYEA RQLNY
Sbjct: 116 TT---QKIRIPMIEN-SRSMNLSNAVAVTVYEAWRQLNY 150
>gi|333979097|ref|YP_004517042.1| TrmH family RNA methyltransferase [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822578|gb|AEG15241.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 153
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTCAA+ LHLV PLGF DD LKRAGLDYW V I H
Sbjct: 1 MHIVLVEPEIPANTGNIARTCAATGSILHLVRPLGFSTDDKYLKRAGLDYWHLVEIHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R +RQ R + RG +SE+ Y D+L+FG ET GLP + LL +
Sbjct: 61 SFEEVRRLYRQH----RFYFLSTRGIHLYSEVRYGPDDFLVFGKETQGLPAD-LLSANRD 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T+RIPM E R LNL+ SV + +YEA RQ + L+
Sbjct: 116 Y----TLRIPMREGTTRSLNLANSVALVLYEALRQQGFPGLR 153
>gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336]
gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus
2336]
Length = 161
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAQIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ EF + E RL A T +GT HS++++ GDYL+FG ET G+ P +LD
Sbjct: 61 KTFNEFLN----TEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGI-PMPILDNLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T IRIPM+E R +NLS +V + VYEA RQLNY
Sbjct: 116 TT---QKIRIPMIEN-SRSMNLSNAVAVTVYEAWRQLNY 150
>gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
NJ8700]
gi|422337785|ref|ZP_16418755.1| tRNA/rRNA methyltransferase [Aggregatibacter aphrophilus F0387]
gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
aphrophilus NJ8700]
gi|353345117|gb|EHB89415.1| tRNA/rRNA methyltransferase [Aggregatibacter aphrophilus F0387]
Length = 158
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 98/160 (61%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFADIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+++ GDYL+FG ET G+P + L + +
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVTFELGDYLMFGPETRGIPMDILNNMPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + +YEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTIYEAWRQLGYQ 151
>gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1]
gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1]
Length = 153
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 96/154 (62%), Gaps = 9/154 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVLV PQIP NTG IARTCAA+ LHL+ PLGF++ D LKRAGLDYWPYV + H W
Sbjct: 4 VVLVHPQIPPNTGNIARTCAATQTPLHLIEPLGFELSDRYLKRAGLDYWPYVTLYCHPDW 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F + RL+AF + + ++ + D+L+FGSE +G+P + L C + F
Sbjct: 64 PTF---LKTAHRHGRLIAFEPAAQQIYWDFTFAESDWLVFGSEPAGIPADVLATC--DVF 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
++IPM + VR LNLSVSV IA+ E RQL
Sbjct: 119 ----LKIPMWQPAVRSLNLSVSVAIALMEVYRQL 148
>gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
Y412MC10]
Length = 154
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 98/158 (62%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + E R T + T + +I Y+ GD+L+FG ET GLP E LL +E
Sbjct: 63 SFEELQALY----PEGRYFYATTKATKRYMDIEYQDGDFLVFGKETKGLPRE-LLAANAE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IR+PM + VR LNLS S I VYEA RQL++
Sbjct: 118 ----HCIRMPMTDK-VRSLNLSNSAAIMVYEALRQLDF 150
>gi|343518702|ref|ZP_08755692.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus pittmaniae
HK 85]
gi|343393617|gb|EGV06172.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus pittmaniae
HK 85]
Length = 160
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F E KRL A T +GT HS++S+ GDYL+FG ET G+ P+A+LD
Sbjct: 61 KTF----EAFLASEQPKRLFALTTKGTPAHSQVSFALGDYLMFGPETRGI-PKAILDTLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
IRIPM R +NLS SV +AVYEA RQL YE + C
Sbjct: 116 ---AAQKIRIPMTAN-SRSMNLSNSVAVAVYEAWRQLGYEGAVNLASDC 160
>gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
L2-6]
Length = 168
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 11/167 (6%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+S+ L +VLV P+IP NTG +ARTCA +AC LHLVGP+GF +DD KLK AGLDYW Y+
Sbjct: 1 MSEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
I S + D+F + +G FT + +++++Y G YL+FG E +GL PEAL
Sbjct: 61 DI---SYYDSLDDFFSKNDGP--FYYFTTKAPRRYTDVAYPDGAYLVFGREDAGL-PEAL 114
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
L E IR+PM +T R LNLS SV + VYE RQ ++ +L
Sbjct: 115 LAADQEH----CIRMPMRDT-CRSLNLSNSVAVGVYEVLRQWDFPEL 156
>gi|414155042|ref|ZP_11411358.1| putative rRNA methylase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411453355|emb|CCO09262.1| putative rRNA methylase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 169
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 98/163 (60%), Gaps = 10/163 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VLV P+IP NTG IARTCA + GLHLV PLGF DD LKRAGLDYW + + H
Sbjct: 17 LMHIVLVEPEIPANTGNIARTCAVTGTGLHLVEPLGFSTDDRYLKRAGLDYWHLLDLHYH 76
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++AE R + R FT +G + ++ + D+L+FG ET+GLP L
Sbjct: 77 KSFAELRAKY----PAGRFWYFTTKGGRPYHQVQFAPDDFLVFGKETAGLPRHLL----- 127
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM+ VR LNLS SV IA+YEA RQLN+ LK
Sbjct: 128 EENPQACLRIPMLNE-VRSLNLSNSVAIALYEALRQLNFPNLK 169
>gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
carboxidivorans P7]
gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
carboxidivorans P7]
Length = 155
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + C LHL+ PLGF +D+ LKRAGLDYW Y+ ++V+
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + + E+ +++GD+++FG E+ GLP D E
Sbjct: 63 SYEELREKYK----DSTFYFSTTHGDNFYHEVEFKEGDFIVFGRESCGLP-----DSVRE 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V I YEA RQ+++ +K
Sbjct: 114 SDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 155
>gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 154
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGIHLHLVRPLGFRTDDATLKRAGLDYWYAVHIEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + R T + +++ ++ GD+ +FG ET GLPPE L E
Sbjct: 63 SFQEVEEKY----AGSRFFFATTKAKKRYTDFKFQDGDFFVFGKETKGLPPEIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T+R+PM + VR LNLS S I VYEA RQL++
Sbjct: 114 AHPDTTMRMPMTDK-VRSLNLSNSAAIIVYEALRQLDF 150
>gi|428220567|ref|YP_007104737.1| putative rRNA methylase SpoU family [Synechococcus sp. PCC 7502]
gi|427993907|gb|AFY72602.1| putative rRNA methylase SpoU family [Synechococcus sp. PCC 7502]
Length = 146
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 94/158 (59%), Gaps = 13/158 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
LQV LV PQIP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYW Y +++H
Sbjct: 1 MLQVALVYPQIPPNTGNIARTCAATKTRLHLVEPLGFEISDRALKRAGLDYWQYTDLQIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ R + F+ RG + + + D L+FGSETSGLPPE L
Sbjct: 61 ANLESLAAV------AGRWVCFSARGKHDFRKFEFTEQDILLFGSETSGLPPEVLAQ--- 111
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
T+ IPM VR LNLSVSV IA++EA RQLN
Sbjct: 112 ----NLTVAIPMDHPKVRSLNLSVSVAIALFEARRQLN 145
>gi|402818744|ref|ZP_10868324.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR
[Paenibacillus alvei DSM 29]
gi|402503657|gb|EJW14192.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR
[Paenibacillus alvei DSM 29]
Length = 154
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 102/162 (62%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V I +
Sbjct: 3 FNIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLKRAGLDYWYAVTIHYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ ++ + R TK+ + +S+ S++ GD+ +FG ET GLP E ++D E
Sbjct: 63 SFQELQEKYK----DGRFFYATKKADNCYSDFSFQDGDFFVFGKETKGLPQE-IIDANPE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +R+PM + VR LNLS + I VYEA RQ ++ L+
Sbjct: 118 T----CMRMPMTDK-VRSLNLSNAAAIVVYEALRQADFMNLR 154
>gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
gi|416894205|ref|ZP_11925001.1| rRNA methylase [Aggregatibacter aphrophilus ATCC 33389]
gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
gi|347813554|gb|EGY30221.1| rRNA methylase [Aggregatibacter aphrophilus ATCC 33389]
Length = 158
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFADIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+ + GDYL+FG ET G+P + L +
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVKFELGDYLMFGPETRGIPMDILNSMPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYQ 151
>gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
Length = 159
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + C LHL+ PLGF +D+ LKRAGLDYW Y+ ++V+
Sbjct: 7 LNIVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEVYE 66
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + + E+ +++GD+++FG E+ GLP D E
Sbjct: 67 SYEELREKYK----DSTFYFSTTHGDNFYHEVEFKEGDFIVFGRESCGLP-----DSVRE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V I YEA RQ+++ +K
Sbjct: 118 SDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 159
>gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
A2-165]
gi|257198398|gb|EEU96682.1| putative RNA methyltransferase, TrmH family, group 2
[Faecalibacterium prausnitzii A2-165]
Length = 174
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 103/168 (61%), Gaps = 11/168 (6%)
Query: 72 GLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPY 131
+S+ L +VLV P+IP NTG +ARTCA +AC LHLVGP+GF +DD KLK AGLDYW Y
Sbjct: 6 AMSEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHY 65
Query: 132 VVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ I + D+F + +G FT + +++I Y G YL+FG E +GL PEA
Sbjct: 66 LDINYYDG---LEDFFARNKGP--FYYFTTKAPQRYTDIQYPDGAYLVFGREDAGL-PEA 119
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
LL E IR+PM +T R LNLS SV + VYE RQ ++ +L
Sbjct: 120 LLAANQEH----CIRMPMRDT-CRSLNLSNSVAVGVYEVLRQWDFPEL 162
>gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88]
gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88]
Length = 162
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ LKRAGLDYW + +++H
Sbjct: 10 LNIVLFQPEIPQNTGNIARTCVLTDSKLHLIKPLGFSLDEKHLKRAGLDYWSQLSLEIHE 69
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ + R ++ + + T T T+S++ + +GD+++FG ETSGLP D E
Sbjct: 70 SYEDLRKKYK----DGKFYFSTTHSTKTYSDVEFEEGDFIVFGRETSGLP-----DYVRE 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
I++PM+++ R LNLS +V I YEA RQ+N+ +K
Sbjct: 121 DNRDTCIKVPMIKSSTRSLNLSNTVAIVTYEALRQMNFPNMK 162
>gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 168
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 11/167 (6%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+++ L +VLV P+IP NTG +ARTCA +AC LHLVGP+GF +DD KLK AGLDYW Y+
Sbjct: 1 MNEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
I + + EF F + G FT + ++++SY G YL+FG E +GL PEAL
Sbjct: 61 DISYYDSLDEF---FAKNSGP--YYYFTTKAPQRYTDVSYPDGAYLVFGREDAGL-PEAL 114
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
L E IR+PM +T R LNLS SV + VYE RQ ++ +L
Sbjct: 115 LAANQEH----CIRMPMRDT-CRSLNLSNSVAVGVYEVLRQWDFPEL 156
>gi|443314155|ref|ZP_21043739.1| rRNA methylase, putative, group 2 [Leptolyngbya sp. PCC 6406]
gi|442786243|gb|ELR95999.1| rRNA methylase, putative, group 2 [Leptolyngbya sp. PCC 6406]
Length = 153
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 104/156 (66%), Gaps = 8/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+++VLV+P+IP NTG IARTCAA+A LHLV PLGF++ D LKRAGLDYWPYV ++VH
Sbjct: 1 MVRIVLVNPEIPPNTGNIARTCAATATTLHLVQPLGFELSDRYLKRAGLDYWPYVDLQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
TW F R + G+ + F+ GTS+++ ++Y D+LIFG ET GLPP L C
Sbjct: 61 ETWNAFAQEARDRGGQ--WIGFSTSGTSSYTALAYTPEDWLIFGPETRGLPPAILTACDQ 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
T RIPM + VR LNL+ SV I ++EA RQ
Sbjct: 119 ------TARIPMAQPGVRSLNLASSVAIGLFEALRQ 148
>gi|373494789|ref|ZP_09585388.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium infirmum
F0142]
gi|371967833|gb|EHO85301.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium infirmum
F0142]
Length = 156
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +V V P+IP NTG IARTCAA+ LHLV PLGF + + +KRAGLDYWPYV I+VH
Sbjct: 3 LHIVFVEPEIPPNTGNIARTCAATNTKLHLVKPLGFDISEKAVKRAGLDYWPYVDIEVHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ +F + ++ + ++ LA TK G ++E YR D +FG ET GLP + + +E
Sbjct: 63 SLNDFMEKYKNK---RKFLATTK-GGHLYTEFEYRDDDMFMFGRETRGLPRDFI--AKNE 116
Query: 199 TFGGGTIRIPMVE-TYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+IRIPM E T +R NLS S I ++EA RQL + +LK
Sbjct: 117 EM---SIRIPMSENTRLRSFNLSNSANIILFEALRQLGFPELK 156
>gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365966649|ref|YP_004948211.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|415770616|ref|ZP_11484959.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416081365|ref|ZP_11586429.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416107971|ref|ZP_11590809.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444346331|ref|ZP_21154299.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|444348026|ref|ZP_21155792.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004595|gb|EGY45093.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348011038|gb|EGY51029.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348656789|gb|EGY74396.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365745562|gb|AEW76467.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443541783|gb|ELT52185.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443547809|gb|ELT57234.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 158
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+ + GDYL+FG ET G+P + L
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPMDILNSMPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|402573300|ref|YP_006622643.1| rRNA methylase SpoU family [Desulfosporosinus meridiei DSM 13257]
gi|402254497|gb|AFQ44772.1| putative rRNA methylase SpoU family [Desulfosporosinus meridiei DSM
13257]
Length = 182
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 103/164 (62%), Gaps = 10/164 (6%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
NK L +V+V P+IP NTG +AR CAA+ LHLV PLGF +DD LKRAGLDYW + I
Sbjct: 28 NKRLNIVMVEPEIPPNTGNVARLCAATGAALHLVKPLGFSIDDKHLKRAGLDYWHLLDIY 87
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
++ +AEF + + R LA TK G+ ++++ISY G YL+FG ET GL PE +LD
Sbjct: 88 IYENFAEFEE---KNPVGPRYLATTK-GSRSYTDISYEPGGYLLFGKETKGLAPE-ILDR 142
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
ET IR+PM + R LNLS SV + VYE RQ + L
Sbjct: 143 YPET----KIRLPM-RSDARSLNLSNSVAVIVYEVLRQWGFPDL 181
>gi|342217892|ref|ZP_08710530.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera sp. UPII
135-E]
gi|341592879|gb|EGS35739.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera sp. UPII
135-E]
Length = 161
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +V+V P+IPGNTG +AR CAA+ LHLV PLGF ++D LKRAGLDYWP V ++VH
Sbjct: 1 MHIVMVEPEIPGNTGNVARLCAANHMTLHLVKPLGFSLEDKYLKRAGLDYWPLVDVRVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
AE D + + T + +++IS+ + D L FG ET GLP E L
Sbjct: 61 NVAEVLDAY----AGHNMYYLTTKSDQCYADISFAQDDLLFFGKETKGLPEEMLKAHPER 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
F RIPMVE R LNLS SV I YEA RQL + QL
Sbjct: 117 CF-----RIPMVEA-ARSLNLSNSVAIVAYEALRQLQFPQL 151
>gi|387121327|ref|YP_006287210.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415764214|ref|ZP_11482314.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416031614|ref|ZP_11572572.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416046187|ref|ZP_11575633.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|429732450|ref|ZP_19267062.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans Y4]
gi|347994794|gb|EGY36041.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001341|gb|EGY42090.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348654339|gb|EGY69971.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875819|gb|AFI87378.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429156160|gb|EKX98798.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans Y4]
Length = 158
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIPMSILNTMPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|345861629|ref|ZP_08813885.1| spoU rRNA Methylase family protein [Desulfosporosinus sp. OT]
gi|344325329|gb|EGW36851.1| spoU rRNA Methylase family protein [Desulfosporosinus sp. OT]
Length = 180
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 16/182 (8%)
Query: 64 RGVGEAVNGLSQ------NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVD 117
R V E G+++ NK L +VLV P+IP NTG +AR CAA+ LHLV PLGF +D
Sbjct: 8 RDVVETAQGVTERGTKVLNKRLNIVLVEPEIPPNTGNVARLCAATGATLHLVKPLGFSID 67
Query: 118 DTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY 177
D LKRAGLDYW ++ I ++ ++EF + + EG R LA TK G H++I+Y+ G Y
Sbjct: 68 DKHLKRAGLDYWHFLDIVIYENFSEFEE--KNPEG-PRYLATTK-GGRAHTDIAYQPGGY 123
Query: 178 LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
L+FG ET GL PE L + IR+PM+ R LNLS +V + VYE RQ +
Sbjct: 124 LLFGKETKGLAPEIL-----ARYPDTAIRLPMLAE-ARSLNLSNTVAVVVYEVLRQWGFS 177
Query: 238 QL 239
L
Sbjct: 178 GL 179
>gi|416066648|ref|ZP_11582053.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002643|gb|EGY43322.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 158
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIPVSILNTMPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
reducens MI-1]
Length = 152
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 99/161 (61%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTC+ + LHLV PLGF DD LKRAGLDYW + + H
Sbjct: 1 MHIVLVEPEIPANTGNIARTCSVTGASLHLVEPLGFSTDDRYLKRAGLDYWHLLDLHYHK 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A +QQ E R FT +G + E S+ + D+L+FG ET+GLP E LL +
Sbjct: 61 SFAA----LQQQYPEGRFWYFTTKGGRPYHEASFEENDFLVFGKETAGLPKE-LLAANPD 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM+ VR LNLS SV IAVYEA RQ N+ +
Sbjct: 116 N----CLRIPMLGQ-VRSLNLSNSVAIAVYEALRQHNFPNM 151
>gi|416053388|ref|ZP_11578853.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|418464100|ref|ZP_13035042.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|347991163|gb|EGY32662.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|359757441|gb|EHK91595.1| TrmH family RNA methyltransferase [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 158
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIPMAILNTMPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|416074683|ref|ZP_11584612.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337280|ref|ZP_21151280.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006686|gb|EGY47081.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443547209|gb|ELT56749.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 158
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HSE+ + GDYL+FG ET G+P + L
Sbjct: 61 KTF----EAFLQSEQPKRLFALTTKGTPAHSEVKFLLGDYLLFGPETRGIPMDILNSMPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|392393500|ref|YP_006430102.1| rRNA methylase SpoU family [Desulfitobacterium dehalogenans ATCC
51507]
gi|390524578|gb|AFM00309.1| putative rRNA methylase SpoU family [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 153
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 99/156 (63%), Gaps = 10/156 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VLV P+IP NTG +AR CAA+ LHLV PLGF++ D LKRAGLDYW + I+V+
Sbjct: 1 MLNIVLVEPEIPPNTGNVARLCAATGATLHLVKPLGFEISDKHLKRAGLDYWDMLDIRVY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+AEF + + EG R LA TK H++I Y++G YL+FG ET GL PE L
Sbjct: 61 ENYAEFEE--KNPEG-PRYLATTK-AQRLHTDIQYQQGGYLLFGKETKGLSPEIL----- 111
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ T+R+PM+ R LNLS SV + VYEA RQ
Sbjct: 112 ARYPESTLRLPMIAG-ARSLNLSNSVAVVVYEALRQ 146
>gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236]
gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236]
Length = 162
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60
Query: 138 STWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F D + + RL A T +GT HS +SY+ DYL+FG ET GLPP L
Sbjct: 61 HDYHAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDYLLFGPETRGLPPTVLDALP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 121 AQQ----KIRIPMLAA-SRSMNLSNAVSVVVYEAWRQLGY 155
>gi|337750930|ref|YP_004645092.1| protein CspR [Paenibacillus mucilaginosus KNP414]
gi|379723979|ref|YP_005316110.1| protein CspR [Paenibacillus mucilaginosus 3016]
gi|386726711|ref|YP_006193037.1| protein CspR [Paenibacillus mucilaginosus K02]
gi|336302119|gb|AEI45222.1| CspR [Paenibacillus mucilaginosus KNP414]
gi|378572651|gb|AFC32961.1| CspR [Paenibacillus mucilaginosus 3016]
gi|384093836|gb|AFH65272.1| protein CspR [Paenibacillus mucilaginosus K02]
Length = 154
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG I+RTCAA+ LHLV PLGF DD LKRAGLDYW V ++ H
Sbjct: 3 FHIVLVEPEIPANTGNISRTCAATGTWLHLVRPLGFDTDDRTLKRAGLDYWHSVKLEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E +D Q + R T + ++++ +R GD+L+FG ET GLPP+ L E
Sbjct: 63 SFQEVKD----QYPDARFFFATTKAQKLYTDVEFRDGDFLVFGKETKGLPPDIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IR+PM E VR LNLS S I ++E RQ ++ L+
Sbjct: 114 AHPEQLIRMPMTEA-VRSLNLSNSAAIVLFEGLRQTGFQGLR 154
>gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
Length = 158
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F Q E KRL A T +GT HS++ + GDYL+FG E+ G+P L +
Sbjct: 61 KTF----EAFLQSERPKRLFALTTKGTPAHSQVQFELGDYLMFGPESRGIPMSILNSLAA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM E R +NLS SV + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMTEN-SRSMNLSNSVAVTVYEAWRQLGY 150
>gi|381403312|ref|ZP_09927996.1| putative rRNA methylase [Pantoea sp. Sc1]
gi|380736511|gb|EIB97574.1| putative rRNA methylase [Pantoea sp. Sc1]
Length = 157
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANSGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIRFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS ++Y+ GDYL+FG E+ GLP E L +
Sbjct: 61 ADYAA----FLASEAPERLFALTTKGTPAHSAVTYQAGDYLLFGPESRGLPAEILAALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-RAESRSMNLSNAVSVVVYEAWRQLDY 150
>gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|386318904|ref|YP_006015067.1| TrmH family RNA methyltransferase [Staphylococcus pseudintermedius
ED99]
gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
pseudintermedius HKU10-03]
gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
pseudintermedius ED99]
Length = 156
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 95/165 (57%), Gaps = 14/165 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD L+RAGLDYW YV I +
Sbjct: 3 IHVVLYQPEIPANTGNIARTCAATDTHLHLIRPLGFSTDDKMLRRAGLDYWKYVSITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
F F Q EG+ LL TK G+ H+ + D Y IFG ET+GLP D
Sbjct: 63 NIESF---FEQTEGQYFLL--TKFGSKNHTSQDFSDVDQNYYFIFGKETTGLP-----DW 112
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ + +RIPM E VR LNLS + I VYEA RQ NY L+
Sbjct: 113 VKDKYDNTALRIPMNEN-VRALNLSNTAAILVYEALRQQNYPNLQ 156
>gi|251798741|ref|YP_003013472.1| TrmH family RNA methyltransferase [Paenibacillus sp. JDR-2]
gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
JDR-2]
Length = 154
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 93/155 (60%), Gaps = 10/155 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG IARTCAA+ LHLV PLGFQ DD LKRAGLDYW V ++ H
Sbjct: 3 FHIVLVEPEIPANTGNIARTCAATGAHLHLVRPLGFQTDDRTLKRAGLDYWHAVHVEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E +D R + R T ++E +R GD+ +FG ET GLP E L+D +
Sbjct: 63 SFKELQD----ANPNGRFFYASTRATKVYTEFDFRDGDFFVFGKETKGLPQE-LIDANLD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
T +R+PM VR LNLS S I VYEA RQ
Sbjct: 118 T----CMRMPMTGD-VRSLNLSNSAAIIVYEALRQ 147
>gi|269140796|ref|YP_003297497.1| tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
gi|387869243|ref|YP_005700712.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda
FL6-60]
gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda
FL6-60]
Length = 156
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 98/161 (60%), Gaps = 13/161 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDYHEFASIRRH 60
Query: 138 STWAEFRDYFRQQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
++ F D GEK RL A T +GT HSE++YR GDYL+FG ET GL P +LD
Sbjct: 61 HDYSAFLD------GEKPTRLFALTTKGTPAHSEVTYRDGDYLLFGPETRGL-PSTILDS 113
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ + R +NLS +V + VYEA RQL Y
Sbjct: 114 LP---AAQKIRIPMLAS-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|365836963|ref|ZP_09378347.1| RNA methyltransferase, TrmH family, group 2 [Hafnia alvei ATCC
51873]
gi|364563160|gb|EHM40980.1| RNA methyltransferase, TrmH family, group 2 [Hafnia alvei ATCC
51873]
Length = 167
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 9/165 (5%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
L L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY +
Sbjct: 6 LGAYHMLNIVLFEPEIPPNTGNIIRLCANTGFKLHLIEPLGFTWDDKRLRRAGLDYHEFA 65
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
+K H + F D E +RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 66 TLKKHHDYQAFLD----SEKPERLFALTTKGTPAHSAVSYQAGDYLVFGPETRGLPAYIL 121
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
++ IRIPM+ + R +NLS +V + VYEA RQL YE
Sbjct: 122 DALPAQQ----KIRIPMLAS-SRSMNLSNAVSVVVYEAWRQLGYE 161
>gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans
568]
gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia
proteamaculans 568]
Length = 157
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ P+GF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDYHEFASIRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP E L +
Sbjct: 61 ADYAA----FIASENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEILEALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-QAQSRSMNLSNAVAVVVYEAWRQLDY 150
>gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
Length = 157
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP + L +
Sbjct: 61 ADYAA----FLSAEAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPADILNALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-QPDSRSMNLSNAVSVVVYEAWRQLDY 150
>gi|440233034|ref|YP_007346827.1| rRNA methylase, putative, group 2 [Serratia marcescens FGI94]
gi|440054739|gb|AGB84642.1| rRNA methylase, putative, group 2 [Serratia marcescens FGI94]
Length = 157
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFPWDDKRLRRAGLDYHEFASIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 ADYAA----FVASEKPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 EQ----KIRIPM-QAQSRSMNLSNAVSVVVYEAWRQLDY 150
>gi|333929731|ref|YP_004503310.1| TrmH family RNA methyltransferase [Serratia sp. AS12]
gi|333934684|ref|YP_004508262.1| TrmH family RNA methyltransferase [Serratia plymuthica AS9]
gi|386331554|ref|YP_006027724.1| TrmH family RNA methyltransferase [Serratia sp. AS13]
gi|386823249|ref|ZP_10110402.1| putative rRNA methylase [Serratia plymuthica PRI-2C]
gi|421786212|ref|ZP_16222621.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Serratia plymuthica
A30]
gi|333476291|gb|AEF48001.1| RNA methyltransferase, TrmH family, group 2 [Serratia plymuthica
AS9]
gi|333493791|gb|AEF52953.1| RNA methyltransferase, TrmH family, group 2 [Serratia sp. AS12]
gi|333963887|gb|AEG30660.1| RNA methyltransferase, TrmH family, group 2 [Serratia sp. AS13]
gi|386379810|gb|EIJ20594.1| putative rRNA methylase [Serratia plymuthica PRI-2C]
gi|407751558|gb|EKF61732.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Serratia plymuthica
A30]
Length = 157
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ P+GF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDYHEFANIRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP E L +
Sbjct: 61 ADYAA----FIASENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEILEALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-QAQSRSMNLSNAVAVVVYEAWRQLDY 150
>gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
Length = 157
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ P+GF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDYHEFANIRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP E L +
Sbjct: 61 ADYAA----FIASENPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPAEILEALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-QAQSRSMNLSNAVAVVVYEAWRQLDY 150
>gi|359414801|ref|ZP_09207266.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium sp. DL-VIII]
gi|357173685|gb|EHJ01860.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium sp. DL-VIII]
Length = 153
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +++ ++KRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTGSKLHLIKPLGFDINEKQVKRAGLDYWKDLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ +F + + G+K++ T G + EIS+++GD+++FG ETSG+P E E
Sbjct: 63 SYEDFMNKY----GDKKIYLSTTHGETHFDEISFKEGDFIMFGRETSGVPQEV-----HE 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G RIPM+++ R LNLS +V I YEA RQ+ + +K
Sbjct: 114 KHIG--FRIPMIKSSTRSLNLSNTVAIVAYEALRQIGFPNMK 153
>gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
gi|419802818|ref|ZP_14327998.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Haemophilus
parainfluenzae HK262]
gi|419845612|ref|ZP_14368879.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Haemophilus
parainfluenzae HK2019]
gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
gi|385189058|gb|EIF36527.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Haemophilus
parainfluenzae HK262]
gi|386415480|gb|EIJ30012.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Haemophilus
parainfluenzae HK2019]
Length = 158
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HSE+ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGGPAHSEVQFELGDYLMFGPETRGIPMSILDKMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV +AVYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVAVYEAWRQLGYE 151
>gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
modesticaldum Ice1]
gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
modesticaldum Ice1]
Length = 153
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG +AR CA + C LHL+ PLGF +DD +LKRAGLDYW V + VH
Sbjct: 1 MFHIVLVEPEIPPNTGNVARLCAGTGCELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
WA F ++ G+ LL + +G + E +YR GD+ +FG ET GL E L +
Sbjct: 61 DNWAA----FLEKHGQANLLLLSTKGKKAYHEFAYRPGDFFVFGKETKGLSEEILSEWPE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
RIP+V R LNLS +V + V+E RQ
Sbjct: 117 R-----VARIPLVAD-ARSLNLSNAVAVVVFEGLRQ 146
>gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 157
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + +K H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFKLHLIEPLGFTWDDKRLRRAGLDYHEFATLKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F D E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYQAFLD----SEQPERLFALTTKGTPAHSAVSYQAGDYLVFGPETRGLPAYILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ IRIPM+ + R +NLS +V + VYEA RQL YE
Sbjct: 117 QQ----KIRIPMLAS-SRSMNLSNAVSVVVYEAWRQLGYE 151
>gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
17244]
gi|169259085|gb|EDS73051.1| RNA methyltransferase, TrmH family, group 2 [Anaerofustis
stercorihominis DSM 17244]
Length = 155
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VL +P+IP NTG I RTCA + LHL+ PLGF + D LKRAGLDYW I V+
Sbjct: 2 FNIVLFNPEIPQNTGNIVRTCAVTDTKLHLIKPLGFSIKDKYLKRAGLDYWDEATISVYE 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ +F D + K L T +G +++ + + DY +FG+ET GLP D +
Sbjct: 62 NFEDFLD----KNDVKNLYLLTTKGDKNYTDFKFEENDYFMFGAETKGLP-----DYIHQ 112
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM+ + RCLNLS SV + +YEA RQ N+E +K
Sbjct: 113 KYPSTRLRIPMIPKENARCLNLSNSVAVLLYEALRQHNFESMK 155
>gi|403387790|ref|ZP_10929847.1| rRNA methyltransferase [Clostridium sp. JC122]
Length = 155
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + C LHL+ PLGF +D+ LKRAGLDYWP + I++H
Sbjct: 3 LNIVLFQPEIPQNTGNIGRTCVLTDCKLHLIKPLGFSLDEKSLKRAGLDYWPLLDIEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ R+ + T + T ++++ ++GD+L+FG E+SGLP D
Sbjct: 63 SYEALREKYNN----GNFYFCTTKATKFYTDVQLKQGDFLVFGRESSGLP-----DYIRN 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IR+PMVET R LNLS +V + YE RQ+ ++ +K
Sbjct: 114 ENANNLIRVPMVETTTRSLNLSNTVAVIAYEGLRQIGFKGMK 155
>gi|383815781|ref|ZP_09971189.1| TrmH family RNA methyltransferase [Serratia sp. M24T3]
gi|383295359|gb|EIC83685.1| TrmH family RNA methyltransferase [Serratia sp. M24T3]
Length = 162
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ P+GF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPMGFAWDDKRLRRAGLDYHEFTNIKHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F E +RL A T +GT HS +SY+ DYL+FG E+ GLP L +
Sbjct: 61 ENY----DAFLASEAPQRLFALTTKGTPAHSAVSYQDNDYLLFGPESRGLPATILDNLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 117 EH----KIRIPM-QPDSRSMNLSNAVSVVVYEAWRQLGY 150
>gi|322835014|ref|YP_004215041.1| TrmH family RNA methyltransferase [Rahnella sp. Y9602]
gi|384260236|ref|YP_005404170.1| TrmH family RNA methyltransferase [Rahnella aquatilis HX2]
gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
gi|380756212|gb|AFE60603.1| TrmH family RNA methyltransferase [Rahnella aquatilis HX2]
Length = 157
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFGWDDKRLRRAGLDYHEFAHIKHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + D F E +RL A T +GT HS +SY+ D+L+FG ET GLP L + +
Sbjct: 61 ANY----DAFLSSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLPASILDNLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM R +NLS +V + VYEA RQL Y
Sbjct: 117 QQ----KIRIPM-RAESRSMNLSNAVSVVVYEAWRQLGY 150
>gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund
17B]
gi|188589587|ref|YP_001922195.1| tRNA/rRNA methyltransferase [Clostridium botulinum E3 str. Alaska
E43]
gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
B str. Eklund 17B]
gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
botulinum E3 str. Alaska E43]
gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 153
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ ++RAGLDYW Y+ +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTDSKLHLIKPLGFDIDEKHVRRAGLDYWKYLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ F + ++ E+ L+ T G +SEIS++KGD+++FG E+SG+P + E
Sbjct: 63 SYEAFMEKYK---NERIFLSSTHAG-DYYSEISFQKGDFIMFGRESSGVP-----ESIHE 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G +RIPM+++ R LNLS +V I YEA RQ + +K
Sbjct: 114 VITG--MRIPMIQSSTRSLNLSNTVSIVAYEALRQFGFPNMK 153
>gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
gi|156868892|gb|EDO62264.1| RNA methyltransferase, TrmH family, group 2 [Clostridium leptum DSM
753]
Length = 168
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +V+V P+IP NTG +ARTCAA+ LHLVGP+GF +DD KLKRAGLDYW + I +
Sbjct: 4 LNIVMVEPEIPQNTGNVARTCAATGARLHLVGPMGFTIDDKKLKRAGLDYWHLLDITYYE 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF F + +G F+ + H++++Y YL+FG ET+GLP + L D
Sbjct: 64 NLEEF---FEKNKG-GNFYYFSTKAPHRHTDLAYPDNCYLLFGKETAGLPEKLLFDNPDT 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T+RIPM++ R LNLS SV + VYE RQ Y +L+
Sbjct: 120 -----TVRIPMIDE-ARSLNLSNSVAVGVYEVLRQWGYPELQ 155
>gi|374996126|ref|YP_004971625.1| rRNA methylase SpoU family [Desulfosporosinus orientis DSM 765]
gi|357214492|gb|AET69110.1| putative rRNA methylase SpoU family [Desulfosporosinus orientis DSM
765]
Length = 182
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 64 RGVGEAVNGLSQ------NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVD 117
RG E V + + +K L +V+V P+IP NTG +AR CAA+ LHLV PLGF +D
Sbjct: 10 RGAAEIVQAVIERRTIFLSKQLNIVMVEPEIPPNTGNVARLCAATGATLHLVKPLGFSID 69
Query: 118 DTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY 177
D +LKRAGLDYW + I V+ +AEF + + R LA TK G S ++++SY +G Y
Sbjct: 70 DKQLKRAGLDYWHLLDIYVYENFAEFEE---KNPVGPRYLATTKGGRS-YTDVSYEEGGY 125
Query: 178 LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
L+FG ET GL PE +L ET TIR+PM + R LNLS SV + VYE RQ +
Sbjct: 126 LLFGKETKGLAPE-ILGRYPET----TIRLPM-RSGARSLNLSNSVAVVVYEVLRQWGFP 179
Query: 238 QL 239
L
Sbjct: 180 DL 181
>gi|334138325|ref|ZP_08511744.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
HGF7]
gi|333603974|gb|EGL15369.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
HGF7]
Length = 154
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG I+RTCAA+ LHLV PLGF DD LKRAGLDYW V ++ H
Sbjct: 3 FHIVLVEPEIPANTGNISRTCAATGTYLHLVRPLGFSTDDKTLKRAGLDYWHSVKLEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + R T + +++ +R GD+ +FG ET GLPPE L E
Sbjct: 63 SFDEVKEKY----ARNRFFFATTKTDKRYTDFEFRDGDFFVFGRETKGLPPEIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G T+R+PM + VR LNLS S I ++EA RQ ++ L+
Sbjct: 114 AHPGQTMRMPMSDA-VRSLNLSNSAAIVLFEALRQNDFPGLR 154
>gi|300721214|ref|YP_003710484.1| tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
19061]
Length = 167
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60
Query: 138 STWAEFRD------YFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q RL A T +GT HS +SYR GDYL+FG ET GLP
Sbjct: 61 HDYNAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDYLMFGPETRGLPSYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + E IRIPM+ R +NLS +V + V+EA RQL Y
Sbjct: 121 LDNMPPEQ----KIRIPMLSD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|386347712|ref|YP_006045961.1| TrmH family RNA methyltransferase [Spirochaeta thermophila DSM
6578]
gi|339412679|gb|AEJ62244.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta
thermophila DSM 6578]
Length = 154
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 95/154 (61%), Gaps = 10/154 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF ++D L+RAGLDYWP V +++HS
Sbjct: 3 IHVVLHEPEIPQNTGNIARTCAATGAVLHLIEPLGFSLEDRYLRRAGLDYWPMVDLRLHS 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W D F ++E L + RGT ++ S+ YL+FG ET+GLPP L E
Sbjct: 63 SW----DAFLEEERPSSLFLLSTRGTRSYHTCSFPDETYLVFGKETAGLPPRIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAAR 232
F +RIPM R LNLS +V I VYEA R
Sbjct: 114 AFPDRVVRIPM-RAGARSLNLSNAVAILVYEALR 146
>gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans
2-40]
gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40]
Length = 177
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 100/165 (60%), Gaps = 11/165 (6%)
Query: 74 SQNKF--LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPY 131
QN+ +VL P+IP NTG I R CA + C LHL+ PLGF++DD +L+RAGLDY +
Sbjct: 18 QQNRLNMFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEW 77
Query: 132 VVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ H+ W D F +Q+ +RL A + +GT H E+S +GDYL+FG ET GLP E
Sbjct: 78 QSVVTHANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEI 133
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L T + +RIPM+ R +NLS + + VYEA RQL +
Sbjct: 134 LEYITFDN----VLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 173
>gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
turnerae T7901]
gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
turnerae T7901]
Length = 155
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVL P+IP NTG I R CA + C LHLV PLGF +DD +L+RAGLDY + +K+H
Sbjct: 1 MFNVVLYQPEIPPNTGNIIRLCANTGCQLHLVKPLGFVLDDKRLRRAGLDYSEWQNLKIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W RD G + A + +GT+THSE + GDYL+FG ET GLP +
Sbjct: 61 ENWQSLRD----AAGTATIWALSTKGTATHSEARFSAGDYLVFGPETRGLPADIRESLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + R +NLS + + VYEA RQL Y K
Sbjct: 117 EQ----VLRIPM-QAQSRSMNLSNAAAVMVYEAWRQLGYPSAK 154
>gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
UMN179]
gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
UMN179]
Length = 161
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA LHL+ PLGFQ DD +L+R+GLDY Y IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANCGFRLHLIHPLGFQWDDKRLRRSGLDYHEYTTIKHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++AEF + E KRL A T +G HS++ ++ GDYL+FG ET G+P L
Sbjct: 61 QSYAEFLE----SEQPKRLFALTTKGGPAHSQVKFQLGDYLMFGPETRGIPMAILNTMPI 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMCAN-SRSMNLSNSVAVTVYEAWRQLGYQ 151
>gi|451980745|ref|ZP_21929131.1| putative rRNA methylase [Nitrospina gracilis 3/211]
gi|451762081|emb|CCQ90370.1| putative rRNA methylase [Nitrospina gracilis 3/211]
Length = 154
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 8/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL+ P+IP NTG I R C A+ LHLV PLGF++ D++LKRAGLDYW ++ + H+
Sbjct: 5 LNVVLLEPEIPSNTGSIGRLCLATQSTLHLVEPLGFEITDSRLKRAGLDYWQHLDVVRHA 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F + + + F+K+ +SE Y+ G YLIFG ET GL PE L++ E
Sbjct: 65 DWNAF---LQTLPPDAPCIFFSKKAKKLYSEHRYQPGSYLIFGKETLGL-PEELINAHPE 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T +R+P + VR LNLS V IAVYEA RQL Y
Sbjct: 121 T----AVRVPQYDDRVRSLNLSNVVSIAVYEALRQLGY 154
>gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
Length = 190
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 11/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG I+RTCAA+ LHL+ PLGF DD LKRAGLDYW V I H +
Sbjct: 24 HIVLYEPLIPANTGNISRTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWDAVDITYHKS 83
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
A+F Y GE+ L TK T+SE++Y + + +FG ET+GLP + + +
Sbjct: 84 LADFLTYL----GERPLHLVTKFANQTYSEVNYADNQEHFFLFGKETTGLPEDFMRENVE 139
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ IRIPM + +VR LNLS +V + +YEA RQ ++ +L+ A D+
Sbjct: 140 K-----CIRIPMNDEHVRSLNLSNTVALVLYEALRQQDFPKLEKAHHYTNDK 186
>gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 162
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 97/167 (58%), Gaps = 18/167 (10%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60
Query: 138 STWAEFRDYFRQQEGE-------KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE 190
DYF E E RL A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 ------HDYFAFLENEGLTGASSARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPPY 114
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
L + + IRIPM+ R +NLS SV + V+EA RQL+Y+
Sbjct: 115 VLDNMPPQQ----KIRIPMLAN-SRSMNLSNSVAVVVFEAWRQLDYQ 156
>gi|345429263|ref|YP_004822381.1| rRNA methylase [Haemophilus parainfluenzae T3T1]
gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1]
Length = 158
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HSE+ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSEVQFELGDYLMFGPETRGIPMSILDKMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + +YEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTIYEAWRQLGYE 151
>gi|387816444|ref|YP_005676788.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
H04402 065]
gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
H04402 065]
Length = 155
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++++ YR GD+++FG E+SGLP E +
Sbjct: 63 SYEELREKYK----DSNFYFSTTHGNNFYTDVKYRDGDFIVFGRESSGLPDE-----IRD 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM+ T R LNLS +V + YEA RQ+ + +K
Sbjct: 114 SDPSKCIRIPMINTTTRSLNLSNTVAVVTYEALRQVGFPDMK 155
>gi|431793571|ref|YP_007220476.1| rRNA methylase SpoU family [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430783797|gb|AGA69080.1| putative rRNA methylase SpoU family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 153
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 98/156 (62%), Gaps = 10/156 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VLV P+IP NTG +AR CAA+ LHLV PLGF++ D +LKRAGLDYW + I ++
Sbjct: 1 MLNIVLVEPEIPPNTGNVARLCAATGATLHLVKPLGFEISDKQLKRAGLDYWHLLDICLY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+AEF + + +G R LA TK H+EI Y +G Y +FG ET GL PE L
Sbjct: 61 ENFAEFEE--KNPDG-PRYLATTK-AKCLHTEIQYEQGGYFLFGKETKGLAPEIL----- 111
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E + G IR+PM E R LNLS SV + VYEA RQ
Sbjct: 112 ERYPDGAIRLPMREE-ARSLNLSNSVAVVVYEALRQ 146
>gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
Length = 159
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAHIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HSE+ + GDYL+FG ET G+ P A+LD
Sbjct: 61 KTF----EVFLESEKPKRLFALTTKGGPAHSEVKFELGDYLMFGPETRGI-PMAILDSMP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM E R +NLS SV + VYEA RQL+Y
Sbjct: 116 ME---QKIRIPMTEN-SRSMNLSNSVAVTVYEAWRQLDY 150
>gi|354580120|ref|ZP_08999025.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus lactis
154]
gi|353202551|gb|EHB68000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus lactis
154]
Length = 154
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 97/158 (61%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + + R T + + ++ ++ D+L+FG ET GLPPE LL E
Sbjct: 63 SFEELKAKY----PDGRYFYATTKAKKRYMDVQFQDEDFLVFGKETKGLPPE-LLAANPE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IR+PM + VR LNLS S I VYEA RQL++
Sbjct: 118 S----CIRMPMTDK-VRSLNLSNSAAIIVYEALRQLDF 150
>gi|339629687|ref|YP_004721330.1| TrmH family RNA methyltransferase [Sulfobacillus acidophilus TPY]
gi|379007197|ref|YP_005256648.1| tRNA/rRNA methyltransferase SpoU [Sulfobacillus acidophilus DSM
10332]
gi|339287476|gb|AEJ41587.1| RNA methyltransferase, TrmH family, group 2 [Sulfobacillus
acidophilus TPY]
gi|361053459|gb|AEW04976.1| tRNA/rRNA methyltransferase (SpoU) [Sulfobacillus acidophilus DSM
10332]
Length = 163
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 9/161 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ V+LV P+IP NTG IARTCAA+ LHLV PLGFQ+ D L+RAG+DYW V ++VH+
Sbjct: 1 MHVILVEPEIPPNTGNIARTCAATGTVLHLVEPLGFQISDRYLRRAGVDYWHLVDVQVHA 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W + R E RL FT G +S++ Y D L+FG E++GL P+ALL +
Sbjct: 61 SWDQLPLDLRDPE---RLHLFTSHGGRVYSDVPYGPDDVLVFGRESTGL-PDALLHQYPQ 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ +IPM E VR LNLS +V IAVYEA RQ N+ L
Sbjct: 117 AWR----QIPMREG-VRSLNLSNAVAIAVYEAFRQWNFPGL 152
>gi|238898865|ref|YP_002924547.1| tRNA/rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 170
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 97/167 (58%), Gaps = 14/167 (8%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
+ L +VL P+IP NTG I R CA S C LHL+ PLGF + D +L+RAGLDY + +
Sbjct: 2 RKNLLNIVLFEPEIPANTGNIIRLCANSGCQLHLIKPLGFDLSDKRLRRAGLDYHEFTAV 61
Query: 135 KVHSTWAEFRDYFRQQEG-----EKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPP 189
K H + F + EG L A T +G S HS+++Y+K DYL+FG ET GLP
Sbjct: 62 KHHDDYQAFLN----NEGFYNTCVASLFALTTKGYSAHSDVNYQKNDYLLFGPETRGLPS 117
Query: 190 EALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L +E I+IPM + R +NLS +V I VYEA RQLNY
Sbjct: 118 RLLDSLPAEK----KIKIPM-QPNSRSMNLSNAVSIVVYEAWRQLNY 159
>gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
HTCC2170]
gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
HTCC2170]
Length = 150
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I R A+ LHLV P GF++DD +LKRAGLDYWP++ + +
Sbjct: 3 LNIVLFEPEIPNNTGNIGRLALATGSNLHLVKPFGFELDDKRLKRAGLDYWPHISLFTYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E F +Q +K L+ F+ G H I Y+ YLIFG E+ GLP E L + + +
Sbjct: 63 NIEE----FYKQHNDKNLVYFSSHGEKNHWSIDYKDDMYLIFGKESVGLPKEILQNNSDK 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ +IP+ + +R LNL+ +VG+ +YE RQL
Sbjct: 119 LY-----KIPLFSSKIRSLNLANAVGVTIYEGLRQL 149
>gi|313471789|sp|Q21LN7.2|TRML_SACD2 RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
Length = 154
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + C LHL+ PLGF++DD +L+RAGLDY + + H
Sbjct: 1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W D F +Q+ +RL A + +GT H E+S +GDYL+FG ET GLP E L T
Sbjct: 61 ANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEILEYITF 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ +RIPM+ R +NLS + + VYEA RQL +
Sbjct: 117 DN----VLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 150
>gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
Length = 160
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL+YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLSYE 151
>gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase SpoU [Meiothermus ruber DSM 1279]
gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
Length = 160
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 99/159 (62%), Gaps = 10/159 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VVL P+IP N G IARTCAA+ LHL+ PLGFQ + KL+RAGLDYWP V +H
Sbjct: 1 MFKVVLYQPEIPQNAGNIARTCAATGAELHLIRPLGFQWNSAKLRRAGLDYWPEVDYVLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W R + + R+ AF+ + + ++E+ Y+ GDYL+FG E+ GLP E L
Sbjct: 61 DSW---RAFLETLPPDGRIWAFSSKVSRLYTEVRYQPGDYLLFGPESRGLPSEVL----- 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F G + IPM R LNL+V+VG+ +YEA RQ+ +
Sbjct: 113 ERFPG--VTIPMPGRGGRSLNLAVAVGVGLYEALRQVGW 149
>gi|417842243|ref|ZP_12488337.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M19501]
gi|341947458|gb|EGT74107.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M19501]
Length = 160
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRLLA T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPMLILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|188532254|ref|YP_001906051.1| tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis Et1/99]
gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis
Et1/99]
Length = 157
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+++ + F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 ASY----EAFAASETPRRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLDY 150
>gi|372277161|ref|ZP_09513197.1| putative rRNA methylase [Pantoea sp. SL1_M5]
Length = 157
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F E +RL A T +GT HS ++Y+ GDYL+FG E+ GLP E L +
Sbjct: 61 ADY----QAFIASESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-KAESRSMNLSNAVSVVVYEAWRQLDY 150
>gi|292486593|ref|YP_003529461.1| tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946]
gi|428783515|ref|ZP_19001011.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ACW56400]
gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946]
gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
BAA-2158]
gi|426278006|gb|EKV55728.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ACW56400]
Length = 156
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 9/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + I+ H+
Sbjct: 1 MHIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHA 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ + F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L ++
Sbjct: 61 SY----EAFTASEAPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARVLNALPAQ 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 Q----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLDY 149
>gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
2032]
gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
2032]
Length = 157
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 94/156 (60%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IAR C A+ L LV PLGFQ+DD LKRAGLDYWP+V I +
Sbjct: 9 LHIVLVEPEIPPNTGSIARLCGATDTVLDLVHPLGFQIDDKHLKRAGLDYWPHVRI---N 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W D F QQ E+ L T + +++E + GD LIFG ET GLP E L
Sbjct: 66 HWDSL-DAFLQQADERHLHFLTTKTKRSYTEARFCPGDRLIFGKETKGLPEEIL-----T 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ + IPM ++R LNL+++ GI +YEA RQ+
Sbjct: 120 LYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQI 155
>gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0470]
gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0470]
Length = 168
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H
Sbjct: 4 HIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+F + K L TK T+SE++Y G+ Y +FG ET+GL PE +
Sbjct: 64 LADFLAHV----AGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGL-PETFMRENE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E IRIPM + +VR LNLS + + VYEA RQ N+ L+
Sbjct: 119 E----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLE 157
>gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
Length = 161
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 9/156 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV+P+IP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWPYV + +H +
Sbjct: 4 IVLVNPEIPPNTGNIARTCAATETPLHLVMPLGFELSDRYLKRAGLDYWPYVDLHIHQSI 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+F + + + G +L+ ++ + T+ +++++YR+ D+L+FG E+ GL E L C T
Sbjct: 64 EDFWQHAQAKGG--KLIGYSAKATAVYTQLTYRRDDWLLFGCESKGLSAEVLEQCDVVT- 120
Query: 201 GGGTIRIPMVE-TYVRCLNLSVSVGIAVYEAARQLN 235
IPM + +VR LNLSV + ++EA RQ +
Sbjct: 121 -----TIPMSDRRHVRSLNLSVCAAVGLFEAIRQTD 151
>gi|421074663|ref|ZP_15535691.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans JBW45]
gi|392527262|gb|EIW50360.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans JBW45]
Length = 152
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CAA+ LHLV PLGF ++D LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAATNTELHLVKPLGFSIEDKYLKRAGLDYWNLVKVHSHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+AE + ++ E T + +S+I ++ D+L+FG ET+GLP + L++
Sbjct: 61 NFAEVIELYK----EHNFYFNTTKADQHYSDIQFKADDFLVFGKETAGLPEQLLIE---- 112
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPMV R LNLS S I VYEA RQ + LK
Sbjct: 113 -HKDSCIRIPMVSD-ARSLNLSNSAAIVVYEALRQQQFVGLK 152
>gi|311277468|ref|YP_003939699.1| TrmH family RNA methyltransferase [Enterobacter cloacae SCF1]
gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
SCF1]
Length = 157
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F D E +RL A T +GT HS +SYR GDYL+FG ET GLP L +
Sbjct: 61 HDYAAFAD----AEKPQRLFALTTKGTPAHSAVSYRDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine.
gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine
Length = 165
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
N L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK
Sbjct: 2 NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIK 61
Query: 136 VHSTWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
H + F D + + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 62 HHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDA 121
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 122 LPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 158
>gi|395234070|ref|ZP_10412301.1| rRNA methylase [Enterobacter sp. Ag1]
gi|394731436|gb|EJF31217.1| rRNA methylase [Enterobacter sp. Ag1]
Length = 157
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 96/162 (59%), Gaps = 13/162 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFPWDDKRLRRAGLDYHEFTTVLRH 60
Query: 138 STWAEFRDY--FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
RDY F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP E L
Sbjct: 61 ------RDYNAFLEAENPQRLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPAEILNAM 114
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM+ R +NLS SV + VYEA RQL Y+
Sbjct: 115 PPEQ----KIRIPMMPD-SRSMNLSNSVSVVVYEAWRQLGYQ 151
>gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
Length = 153
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 8/161 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L+VVL P+IP N G IARTCAA+A LHL+ PLGF+ D KLKRAGLDYW ++ +H
Sbjct: 1 MLKVVLYQPEIPQNAGNIARTCAAAAAELHLIRPLGFRWGDPKLKRAGLDYWDHLHYVLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W F + + R+ AF+ + T ++ + Y+ GDYL+FG ET GLP E L
Sbjct: 61 DSWEAFVEKALAGARQSRVWAFSSKATQDYTRVPYQPGDYLLFGPETRGLPKEVL----- 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
E F TI +P VR LNL+VSVGI ++EA RQL ++
Sbjct: 116 EQFPSVTIPMP---GKVRSLNLAVSVGIGLFEALRQLRMQE 153
>gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
43531]
gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
43531]
Length = 165
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A QQ E + + ++ +ISY+ D+L+FG E++GLP L D
Sbjct: 61 SFAA----LHQQYYEHTFYFCSTKAHHSYCDISYKTDDFLVFGKESAGLPESLLTD---- 112
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ TIRIPM E R LNLS +V + +EA RQ + L+ + C R
Sbjct: 113 -YEANTIRIPMREE-ARSLNLSNAVAVVAFEALRQHRFADLRIYGNGCHGR 161
>gi|378581633|ref|ZP_09830278.1| putative rRNA methylase [Pantoea stewartii subsp. stewartii DC283]
gi|377815803|gb|EHT98913.1| putative rRNA methylase [Pantoea stewartii subsp. stewartii DC283]
Length = 157
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A+F+ F E RL A T +GT HS +++++GDYL+FG E+ GLP E L +
Sbjct: 61 ---ADFQA-FMTTEQPARLFALTTKGTPAHSAVAWQQGDYLLFGPESRGLPAEVLQTLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM R +NLS +V + VYEA RQL+Y
Sbjct: 117 EQ----KIRIPM-RAESRSMNLSNAVSVVVYEAWRQLDY 150
>gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 165
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A QQ E + + ++ +ISY+ D+L+FG E++GLP L D
Sbjct: 61 SFAA----LHQQYHEHTFYFCSTKARHSYCDISYKIDDFLVFGKESAGLPESLLTD---- 112
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ TIRIPM E R LNLS +V + +EA RQ + L+ + C R
Sbjct: 113 -YEANTIRIPMREE-ARSLNLSNAVAVVAFEALRQHRFADLRIYGNGCHGR 161
>gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435]
gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 156
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 95/163 (58%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
D+F +GE LL TK G T+S+ + K D Y IFG ET+GLP D
Sbjct: 64 ---IEDFFDATQGEYYLL--TKFGKQTYSDFDFSKEDTDYYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ + +RIPM E +R LNLS + + +YEA RQ N+ L
Sbjct: 114 KDKYADTALRIPMSEN-IRSLNLSNTAALLIYEALRQQNFPGL 155
>gi|348026736|ref|YP_004766541.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase HMPREF0889_0049
[Megasphaera elsdenii DSM 20460]
gi|341822790|emb|CCC73714.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
HMPREF0889_0049 [Megasphaera elsdenii DSM 20460]
Length = 161
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +V+V P+IPGNTG +AR CAA+ LHLV PLGF +DD LKRAGLDYW V +++H
Sbjct: 1 MHIVMVEPEIPGNTGNVARLCAANHITLHLVKPLGFSIDDKHLKRAGLDYWSLVDVQIHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E D ++ + R T + +++I ++ D L+FG ET GL PE LL E
Sbjct: 61 NFQEVLDKYK----DHRFFYLTTKSEQCYADIQFQYDDMLVFGKETKGL-PEDLLKANPE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
R+PMVE R LNLS +V I YEA RQL +
Sbjct: 116 R----CFRVPMVEQ-ARSLNLSNTVAIVSYEAMRQLGF 148
>gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
Length = 157
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + +K H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHVIEPMGFPWDDKRLRRAGLDYHEFTRVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS ++Y++GDYL+FG ET GLP E L
Sbjct: 61 ADYAA----FMASEQPQRLFALTTKGTPAHSAVNYQQGDYLLFGPETRGLPAEILNALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-QAQSRSMNLSNAVAVVVYEAWRQLDY 150
>gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
DSM 5476]
gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
DSM 5476]
Length = 172
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV PQIP NTG IARTCAA+ LHLV PLGF +DD KLKRAGLDYW Y+ I +
Sbjct: 4 LNIVLVEPQIPQNTGNIARTCAATGARLHLVKPLGFAIDDKKLKRAGLDYWHYLDITYYD 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+D+F Q G FT +G + +SE++Y Y++FG E +GL PE LL E
Sbjct: 64 G---LKDFFAQNSG-GNFYYFTTKGQANYSEVAYPDNAYIVFGREDAGL-PEDLLFHNPE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T +R+PM +R LNLS +V +A YE RQ + L++ +
Sbjct: 119 T----CVRLPM-RGGIRSLNLSNTVAVATYEVLRQWGFPALESQGN 159
>gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
Length = 158
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 95/158 (60%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VL P+IP N G +ART AA LHL+ PLGF++ LKRAGLDYWPYV ++VH
Sbjct: 1 MVHLVLFQPEIPQNAGNVARTAAALGFPLHLIRPLGFRLSHPGLKRAGLDYWPYVDLRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
TW F R+LAF+ RG + +++GDYL+FG ET GLPPE L S
Sbjct: 61 DTWEAF---LAALPPGARVLAFSARGERNLYQARFQEGDYLLFGPETRGLPPEVLGRFPS 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ IPM VR LNL+V+VG+A YEA RQL
Sbjct: 118 -------LYIPMPGP-VRSLNLAVAVGVAAYEAYRQLR 147
>gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
Length = 157
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F E +RL A T +GT HS ++Y+ GDYL+FG E+ GLP E L +
Sbjct: 61 ADY----QAFIAAESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-RAESRSMNLSNAVSVVVYEAWRQLDY 150
>gi|342903367|ref|ZP_08725178.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M21621]
gi|341955471|gb|EGT81927.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M21621]
Length = 160
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
Length = 167
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60
Query: 138 STWAEFRDYFR----QQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F D + Q G RL A T +GT HS + Y+ DYL+FG ET GLPP
Sbjct: 61 HDYQAFLDSEKLDGAQSTGANAARLFALTTKGTPAHSAVEYQLNDYLLFGPETRGLPPNV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L ++ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 121 LEALPAQQ----KIRIPMLAA-SRSMNLSNAVSVVVYEAWRQLGY 160
>gi|417838928|ref|ZP_12485148.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M19107]
gi|341956082|gb|EGT82522.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M19107]
Length = 160
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b]
Length = 157
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIHPLGFGWDDKRLRRAGLDYHEFTAIKHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS + Y+ GDYL+FG E+ GLP + L
Sbjct: 61 DNYAA----FVAAEAPQRLFALTTKGTPAHSAVRYQAGDYLVFGPESRGLPADILNALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 EQ----KIRIPMMPE-SRSMNLSNAVSVVVYEAWRQLDY 150
>gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia
rustigianii DSM 4541]
gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia
rustigianii DSM 4541]
Length = 233
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 31 NNFSFSSPLSSFSSFRFSPICSLPERENGGFMPRGVGEAVNGLSQNKFL-----QVVLVS 85
NN F R I LP NG + + + + K+L +VL
Sbjct: 15 NNLLFKYEFLGEPPARLFYIPQLPAPRNGCILTKLRVNSASSFYSEKYLINAMPHIVLFE 74
Query: 86 PQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRD 145
P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H + F +
Sbjct: 75 PEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHDYYAFLE 134
Query: 146 Y------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
Q E R+ A T +G +HS +SYR+ DYL+FG ET GLPP L + E
Sbjct: 135 SEGLNPDNNQSESGTRVFALTTKGKPSHSNVSYREDDYLMFGPETRGLPPYVLDNMPMEQ 194
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 195 ----KIRIPMLAE-SRSMNLSNSVAVVVFEAWRQLGY 226
>gi|334339914|ref|YP_004544894.1| TrmH family RNA methyltransferase [Desulfotomaculum ruminis DSM
2154]
gi|334091268|gb|AEG59608.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
ruminis DSM 2154]
Length = 152
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTC+ + LHLV PLGF DD LKRAGLDYW + + H
Sbjct: 1 MHIVLVEPEIPANTGNIARTCSVTGASLHLVKPLGFSTDDRYLKRAGLDYWHQLDLHYHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ R+Q + R + + ++ ++ Y++ D+L+FG ET+GL P+ALL E
Sbjct: 61 DFSA----LRRQYPDGRFWYLSTKAAKSYHQVEYQEDDFLVFGKETAGL-PKALLAQNPE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+E+ VR LNLS S + +YEA RQL + Q+K
Sbjct: 116 Y----CLRIPMLES-VRSLNLSNSAAVVLYEALRQLEFPQMK 152
>gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
gi|440758807|ref|ZP_20937963.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pantoea agglomerans
299R]
gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
gi|436427451|gb|ELP25132.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pantoea agglomerans
299R]
Length = 157
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F E +RL A T +GT HS ++Y+ GDYL+FG E+ GLP E L +
Sbjct: 61 ADY----QAFIATESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-RAESRSMNLSNAVSVVVYEAWRQLDY 150
>gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
SL3/3]
Length = 168
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 100/161 (62%), Gaps = 11/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG +ARTCA +AC LHLVGP+GF +DD KLK AGLDYW Y+ I +
Sbjct: 7 LNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDITYYD 66
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
A+F F + G FT + ++++ Y G YL+FG E +GL PEALL E
Sbjct: 67 GLADF---FARNNGP--YYYFTTKAPQRYTDVQYPDGAYLVFGREDAGL-PEALLAENQE 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IR+PM +T R LNLS SV + VYE RQ ++ +L
Sbjct: 121 H----CIRMPMRDT-CRSLNLSNSVAVGVYEVLRQWDFPEL 156
>gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus]
Length = 144
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 96/152 (63%), Gaps = 10/152 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IARTCAA+ LHLV PLGF DD LKRAGLDYW V I+ H
Sbjct: 3 LHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E +Q+ E R + + T + +I+++ GD+L+FG ET GLPPE LL +
Sbjct: 63 SFEE----LQQKYPEGRFFYTSTKATKRYCDIAFQDGDFLVFGKETKGLPPE-LLAANPD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA 230
+ IR+PM + VR LNLS S I VYEA
Sbjct: 118 S----CIRMPMTDK-VRSLNLSNSAAIIVYEA 144
>gi|453065691|gb|EMF06651.1| rRNA methylase [Serratia marcescens VGH107]
Length = 157
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHLIEPLGFPWDDKRLRRAGLDYHEFTRVSRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP + L +
Sbjct: 61 ADYAA----FLAAENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPADILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPM-QAQSRSMNLSNAVSVVVYEAWRQLDY 150
>gi|392531838|ref|ZP_10278975.1| putative rRNA methylase [Carnobacterium maltaromaticum ATCC 35586]
gi|414083189|ref|YP_006991897.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase SMU_1707c
[Carnobacterium maltaromaticum LMA28]
gi|412996773|emb|CCO10582.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase SMU_1707c
[Carnobacterium maltaromaticum LMA28]
Length = 170
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 97/164 (59%), Gaps = 12/164 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD +LKRAGLDYW V I+ HS
Sbjct: 4 HIVLFEPQIPANTGNIARTCAATNSTLHLIEPLGFSTDDKQLKRAGLDYWNDVAIRYHSD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
A F + G+ L+ TK G +S++ + Y IFG ET+GLP E +
Sbjct: 64 LAAFLKV--AESGQLHLI--TKFGHEVYSDVDLTDSKLDHYFIFGKETTGLPEEFMRQYE 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + I VYEA RQ N+E ++
Sbjct: 120 QE-----CLRIPMNDEHVRSLNLSNTAAILVYEALRQQNFENME 158
>gi|403379919|ref|ZP_10921976.1| protein CspR [Paenibacillus sp. JC66]
Length = 154
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG I+RTCAA+ LHLV PLGF DD LKRAGLDYW V ++ H
Sbjct: 3 FHIVLVEPEIPANTGNISRTCAATGAHLHLVRPLGFNTDDKTLKRAGLDYWHSVKLEYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + E R T + + +++E YR GD+ +FG ET+GLPP A+L+ S+
Sbjct: 63 SFEEVKVKYP----EGRFFCATTKASKSYTEFQYRDGDFFVFGKETAGLPP-AILEAHSD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T I+IP+ + VR LNLS + I +YE RQ + +L
Sbjct: 118 T----CIKIPL-SSAVRSLNLSNAAAIILYEGLRQTGFGEL 153
>gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 156
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVLV P+IP NTG I R CA S LHL+ PLGF +DD K++RAGLDY + +KV+
Sbjct: 2 FHVVLVEPEIPPNTGNIIRLCANSGAQLHLIEPLGFPLDDAKMRRAGLDYHEFATMKVYK 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W +F + + R+ AFT RG+S S + +R GD IFGSET GL PE +
Sbjct: 62 NWNDFLE--KMTPDPSRMFAFTTRGSSIFSTLEFRPGDMFIFGSETKGLSPE----IHAF 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G +R+PM R LNLS SV IAVYEA RQ
Sbjct: 116 FQDGHRVRLPMRPDN-RSLNLSNSVAIAVYEAWRQ 149
>gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter acetatoxydans
Re1]
gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter
acetatoxydans Re1]
Length = 167
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 10/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL+ P+IP NTG IARTCAA+ LHL+GPLGF +DD LKRAGLDYW + ++ +
Sbjct: 8 MLHVVLLEPEIPQNTGNIARTCAATDSVLHLIGPLGFSLDDKYLKRAGLDYWSLLDVRYY 67
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ EF + + G K L T + ++++SY YL+FG ET+GL P LL
Sbjct: 68 GSYLEFEE--KNPGGCKYFL--TTKAKQCYADVSYEPDCYLVFGKETAGL-PVPLLKANR 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
E IRIPM + R LNLS SV I VYEA RQ+ + LKTA
Sbjct: 123 ER----CIRIPMTDE-ARSLNLSNSVAIVVYEALRQMGFNGLKTA 162
>gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
Length = 169
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 98/164 (59%), Gaps = 12/164 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+ L PQIP NTG IARTCAA+ LHL+ PLGFQ DD LKRAGLDYW V I H
Sbjct: 4 HIALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITYHKN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
A F + + G+ L+ TK G +S++ Y + Y +FG ET+GLP E + +
Sbjct: 64 LAAFMEVAKN--GQLHLI--TKFGNRVYSDVDYAAIEEDHYFLFGKETTGLPEEFMREHE 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM + +VR LNLS + I ++EA RQ N+++L+
Sbjct: 120 ED-----CLRIPMNDEHVRSLNLSNTAAILIFEALRQQNFKELE 158
>gi|414161169|ref|ZP_11417432.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410876848|gb|EKS24746.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 156
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 95/163 (58%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I + +
Sbjct: 4 HVVLYQPQIPANTGNIARTCAGTDAHLHLIKPLGFSTDDKMLKRAGLDYWVHVNITYYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
EF F + +G L+ TK G +T ++ Y D Y +FG ET+GLP D
Sbjct: 64 IEEF---FEKTDGHYYLI--TKFGQTTFTDFDYSNSDEDHYFVFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + ++R LNLS + I VYEA RQ NY L
Sbjct: 114 KEKYAETALRIPMND-HIRSLNLSNTAAILVYEALRQQNYPHL 155
>gi|381189891|ref|ZP_09897416.1| RNA methyltransferase [Thermus sp. RL]
gi|380452468|gb|EIA40067.1| RNA methyltransferase [Thermus sp. RL]
Length = 150
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 11/157 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP N G IART AA LHL+ PLGF + KLKRAGLDYWP+V +++H
Sbjct: 3 LHLVLYQPEIPQNVGNIARTAAALGWPLHLIRPLGFLLSSPKLKRAGLDYWPHVDLRLHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A F + + R+ AF+ RG ++ E +R+GDYL+FG E+ GLP E L
Sbjct: 63 SFAAFLEALPRG---ARVFAFSARGEASLYEARFREGDYLLFGPESRGLPEEVLARFP-- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
T++IPM VR LNL+V+VG+A YEA RQL
Sbjct: 118 -----TLKIPMPGP-VRSLNLAVAVGVAAYEAYRQLT 148
>gi|377578584|ref|ZP_09807561.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia hermannii
NBRC 105704]
gi|377540170|dbj|GAB52726.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia hermannii
NBRC 105704]
Length = 157
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFKLHIIEPMGFTWDDKRLRRAGLDYHEFAAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+++ D F + + RL A T +GT HS +SY GDYL+FG ET GLPP L +
Sbjct: 61 ASY----DAFLKAQKPARLFALTTKGTPAHSAVSYAPGDYLLFGPETRGLPPTVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 QQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLDY 150
>gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0860]
gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0635]
gi|422687674|ref|ZP_16745845.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0630]
gi|422701151|ref|ZP_16758992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1342]
gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0860]
gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0635]
gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1342]
gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0630]
Length = 168
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H
Sbjct: 4 HIVLFEPQIPANTGNIARTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F + K L TK T+SE++Y G+ Y +FG ET+GL PE +
Sbjct: 64 LAAFLAHV----AGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGL-PETFMRENE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E IRIPM + +VR LNLS + + VYEA RQ N+ L+
Sbjct: 119 EK----CIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLE 157
>gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI]
gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI]
Length = 152
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 100/162 (61%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVLV P+IP NTG IARTCAA+ LHL+ PLGF +D LKRAGLDYW V + H
Sbjct: 1 MHVVLVEPEIPANTGNIARTCAATGATLHLIKPLGFSTEDRYLKRAGLDYWNLVRVLYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ EF +R G + LA TK ++E+SY G L+FG ET GLPPE L +
Sbjct: 61 SFGEFAASYR---GCRFYLATTK-ARRLYTEVSYEPGSCLVFGKETKGLPPEIL-----D 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ G IR+PM++ R LNL+ +V + +YEA RQ + LK
Sbjct: 112 GYPDGQIRVPMIDG-ARSLNLANAVAVVLYEALRQQGFPGLK 152
>gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
M21/2]
gi|158445672|gb|EDP22675.1| putative RNA methyltransferase, TrmH family, group 2
[Faecalibacterium prausnitzii M21/2]
Length = 168
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 100/161 (62%), Gaps = 11/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG +ARTCA +AC LHLVGP+GF +DD KLK AGLDYW Y+ I +
Sbjct: 7 LNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDITYYD 66
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
A+F F + G FT + ++++ Y G YL+FG E +GL PEALL E
Sbjct: 67 GLADF---FARNNGP--YYYFTTKAPQRYTDVQYPDGAYLVFGREDAGL-PEALLVENQE 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IR+PM +T R LNLS SV + VYE RQ ++ +L
Sbjct: 121 H----CIRMPMRDT-CRSLNLSNSVAVGVYEVLRQWDFPEL 156
>gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
Length = 171
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 97/166 (58%), Gaps = 14/166 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LHL+ PLGF+ DD LKRAGLDYW V I H+
Sbjct: 4 HIVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFKTDDKHLKRAGLDYWNAVDITYHAN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD-----YLIFGSETSGLPPEALLD 194
F +Y G+ +L TK +S+I Y D +L+FG ET+GL PEA +
Sbjct: 64 LDAFMEYL----GDNQLYLVTKFANHVYSDIDYGNNDQDQDIFLMFGKETTGL-PEAFMR 118
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM +T+VR LNLS + +YE RQ ++ +L+
Sbjct: 119 AHEDQ----CIRIPMDDTHVRSLNLSNCAALVIYEVQRQQSFNKLE 160
>gi|358447736|ref|ZP_09158252.1| RNA methyltransferase [Marinobacter manganoxydans MnI7-9]
gi|357228089|gb|EHJ06538.1| RNA methyltransferase [Marinobacter manganoxydans MnI7-9]
Length = 154
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG I R CA + C LHL+ PLGF ++D +++RAGLDY Y +++H
Sbjct: 1 MLHVVLYEPEIPPNTGNIIRLCANTGCQLHLIEPLGFNLEDKQMRRAGLDYSEYATVRIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ + F E RL FT +G++ + E+SY+ GDYL+FG ET GLP +
Sbjct: 61 KSYQD----FLASEQPGRLFGFTTKGSAHYHEVSYQDGDYLMFGPETRGLPADVREGLLP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM + + R LNLS + +AVYEA RQL +
Sbjct: 117 EH----RLRVPM-QPHSRSLNLSNTAALAVYEAWRQLGF 150
>gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE]
gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittEE]
Length = 160
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPL 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
Length = 167
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 96/165 (58%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60
Query: 138 STWAEFRDYFR----QQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F D Q G + RL A T +GT HS +SY+ DYL+FG ET GLPP
Sbjct: 61 HDYQAFLDSENLDGAQSTGPQSARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPPFV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L ++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 LDALPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 160
>gi|395228954|ref|ZP_10407272.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Citrobacter
sp. A1]
gi|424732367|ref|ZP_18160945.1| major facilitator transporter [Citrobacter sp. L17]
gi|394717660|gb|EJF23344.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Citrobacter
sp. A1]
gi|422893026|gb|EKU32875.1| major facilitator transporter [Citrobacter sp. L17]
Length = 157
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLPP L +
Sbjct: 61 PDYAS----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPPSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH]
gi|378696965|ref|YP_005178923.1| rRNA methylase [Haemophilus influenzae 10810]
gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH]
gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810]
Length = 160
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ ++ GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
29200]
gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
R712]
gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
S613]
gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
PC1.1]
gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TUSoD Ef11]
gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4248]
gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0855]
gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2134]
gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0109]
gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0411]
gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 512]
gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0102]
gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 516]
gi|384513999|ref|YP_005709092.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|384519460|ref|YP_005706765.1| SpoU rRNA methylase family protein [Enterococcus faecalis 62]
gi|397700794|ref|YP_006538582.1| SpoU rRNA Methylase family protein [Enterococcus faecalis D32]
gi|421514570|ref|ZP_15961258.1| tRNA (cytosine34-2'-O-)-methyltransferase [Enterococcus faecalis
ATCC 29212]
gi|422684900|ref|ZP_16743125.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4000]
gi|422693445|ref|ZP_16751459.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0031]
gi|422693958|ref|ZP_16751963.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4244]
gi|422697708|ref|ZP_16755640.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1346]
gi|422703497|ref|ZP_16761317.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1302]
gi|422707181|ref|ZP_16764878.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0043]
gi|422710821|ref|ZP_16767756.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0027]
gi|422714697|ref|ZP_16771423.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0309A]
gi|422717835|ref|ZP_16774508.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0309B]
gi|422720069|ref|ZP_16776692.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0017]
gi|422724555|ref|ZP_16781031.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2137]
gi|422725759|ref|ZP_16782216.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0312]
gi|422729355|ref|ZP_16785756.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0012]
gi|422731753|ref|ZP_16788104.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0645]
gi|422734421|ref|ZP_16790710.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1341]
gi|422741514|ref|ZP_16795539.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2141]
gi|422867450|ref|ZP_16914030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1467]
gi|424672148|ref|ZP_18109129.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
599]
gi|424677693|ref|ZP_18114544.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV103]
gi|424679555|ref|ZP_18116377.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV116]
gi|424684280|ref|ZP_18121004.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV129]
gi|424688286|ref|ZP_18124899.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV25]
gi|424690782|ref|ZP_18127311.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV31]
gi|424693758|ref|ZP_18130170.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV37]
gi|424698306|ref|ZP_18134603.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV41]
gi|424699447|ref|ZP_18135664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV62]
gi|424705314|ref|ZP_18141366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV63]
gi|424706401|ref|ZP_18142404.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV65]
gi|424715751|ref|ZP_18145077.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV68]
gi|424719352|ref|ZP_18148499.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV72]
gi|424723915|ref|ZP_18152869.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV73]
gi|424727955|ref|ZP_18156577.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV81]
gi|424734778|ref|ZP_18163259.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV85]
gi|424750850|ref|ZP_18178905.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV93]
gi|424757812|ref|ZP_18185540.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
R508]
gi|428767815|ref|YP_007153926.1| RNA methyltransferase, TrmH family [Enterococcus faecalis str.
Symbioflor 1]
gi|430358142|ref|ZP_19425246.1| SpoU family RNA methyltransferase [Enterococcus faecalis OG1X]
gi|430366444|ref|ZP_19427512.1| SpoU family RNA methyltransferase [Enterococcus faecalis M7]
gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
29200]
gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
R712]
gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
S613]
gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
PC1.1]
gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TUSoD Ef11]
gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0411]
gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0109]
gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2134]
gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0855]
gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4248]
gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 512]
gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0102]
gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
DAPTO 516]
gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2137]
gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4000]
gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0017]
gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0027]
gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX2141]
gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX4244]
gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0012]
gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0031]
gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0043]
gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0312]
gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0645]
gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1302]
gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1341]
gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1346]
gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0309B]
gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX0309A]
gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62]
gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
TX1467]
gi|397337433|gb|AFO45105.1| SpoU rRNA Methylase family protein [Enterococcus faecalis D32]
gi|401672358|gb|EJS78828.1| tRNA (cytosine34-2'-O-)-methyltransferase [Enterococcus faecalis
ATCC 29212]
gi|402353755|gb|EJU88578.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV103]
gi|402356774|gb|EJU91500.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV116]
gi|402357193|gb|EJU91907.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
599]
gi|402361337|gb|EJU95904.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV25]
gi|402362385|gb|EJU96917.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV129]
gi|402363379|gb|EJU97866.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV31]
gi|402372642|gb|EJV06753.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV37]
gi|402372894|gb|EJV06991.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV41]
gi|402376264|gb|EJV10219.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV62]
gi|402379550|gb|EJV13347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV63]
gi|402387829|gb|EJV21291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV65]
gi|402389639|gb|EJV23029.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV68]
gi|402395097|gb|EJV28221.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV81]
gi|402396513|gb|EJV29570.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV73]
gi|402396715|gb|EJV29765.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV72]
gi|402405917|gb|EJV38492.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV85]
gi|402406211|gb|EJV38770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
ERV93]
gi|402406277|gb|EJV38835.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
R508]
gi|427185988|emb|CCO73212.1| RNA methyltransferase, TrmH family [Enterococcus faecalis str.
Symbioflor 1]
gi|429513948|gb|ELA03522.1| SpoU family RNA methyltransferase [Enterococcus faecalis OG1X]
gi|429517086|gb|ELA06555.1| SpoU family RNA methyltransferase [Enterococcus faecalis M7]
Length = 168
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H
Sbjct: 4 HIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F + K L TK T+SE++Y G+ Y +FG ET+GL PE +
Sbjct: 64 LAAFLAHV----AGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGL-PETFMRENE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E IRIPM + +VR LNLS + + VYEA RQ N+ L+
Sbjct: 119 E----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLE 157
>gi|390437275|ref|ZP_10225813.1| putative rRNA methylase [Pantoea agglomerans IG1]
Length = 157
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F E +RL A T +GT HS ++Y+ GDYL+FG E+ GLP E L +
Sbjct: 61 ADY----QAFIASESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL++
Sbjct: 117 QQ----KIRIPM-KAESRSMNLSNAVSVVVYEAWRQLDF 150
>gi|302390100|ref|YP_003825921.1| TrmH family RNA methyltransferase [Thermosediminibacter oceani DSM
16646]
gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
oceani DSM 16646]
Length = 160
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 10/163 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG IARTCAA+ LHLVGPLGF ++D LKRAGLDYW V ++ +
Sbjct: 1 MFHIVLVEPEIPQNTGNIARTCAATGAVLHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S ++EF + R + T + ++++ Y G YL+FG ET+GLP E LL
Sbjct: 61 SNYSEFEEKNRGMP----MFFLTTKAEKCYTDVIYEPGSYLVFGKETAGLPLE-LLKANW 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPMV+ R LNLS + I +YEA RQ N++ LK
Sbjct: 116 ER----CVRIPMVDD-ARSLNLSNAAAIVLYEALRQNNFKGLK 153
>gi|290477269|ref|YP_003470190.1| tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
Length = 167
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60
Query: 138 STWAEF------RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F Q RL A T +GT HS +SY+ GDYL+FG ET GLP
Sbjct: 61 HDFHAFLVSEGLSPVNSQSPSGARLFALTTKGTPAHSNVSYQDGDYLMFGPETRGLPAYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + +E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 121 LDNMPTEQ----KIRIPMLSD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 157
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD S
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQNGDYLMFGPETRGL-PASILDALS 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPN-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|326791033|ref|YP_004308854.1| TrmH family RNA methyltransferase [Clostridium lentocellum DSM
5427]
gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
lentocellum DSM 5427]
Length = 163
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 104/162 (64%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VL P+IP NTG IARTCAA+ LHL+ PLGF +D+ ++KRAGLDYW V ++
Sbjct: 1 MMHIVLHEPEIPQNTGNIARTCAATGATLHLIEPLGFSLDEKQIKRAGLDYWHLVNVQ-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ ++ ++ + K +A TK T++++SY + Y++FG ET+G+P E LLD
Sbjct: 59 -TYKDYEEFLEKNNYPKVYMATTK-SRQTYTDVSYEEECYIMFGKETAGIPEEILLD-NK 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
ET IR+PM+ + R LNLS SV I +YEA RQ +E L
Sbjct: 116 ET----CIRVPMI-SEARSLNLSNSVAIVIYEALRQHQFEHL 152
>gi|83590714|ref|YP_430723.1| RNA methyl transferase TrmH [Moorella thermoacetica ATCC 39073]
gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
39073]
Length = 155
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 98/161 (60%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCA + LHL+ PLGF++D+ LKRAGLDYW V I HS
Sbjct: 3 LHVVLYQPEIPQNTGNIARTCALTGTFLHLIHPLGFRLDEKHLKRAGLDYWEEVNILEHS 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
TWA FR+ + + + +G ++++ YR D+L+FG ET GLP L E
Sbjct: 63 TWAAFREAY----PDANCYYLSTKGQRRYTKVDYRPDDFLVFGPETRGLPASIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
G +R+PM +R LNL+ SV I +YEA RQL++ L
Sbjct: 114 PAGDRVLRVPM-RPGLRSLNLANSVAIVLYEALRQLDFPGL 153
>gi|438001887|ref|YP_007271630.1| tRNA (cytosine34-2'-O-)-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|432178681|emb|CCP25654.1| tRNA (cytosine34-2'-O-)-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 160
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 10/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL+ P+IP NTG IARTCAA+ LHL+GPLGF +DD LKRAGLDYW + ++ +
Sbjct: 1 MLHVVLLEPEIPQNTGNIARTCAATDSVLHLIGPLGFSLDDKYLKRAGLDYWSLLDVRYY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ EF + + G K L T + ++++SY YL+FG ET+GL P LL
Sbjct: 61 GSYLEFEE--KNPGGCKYFL--TTKAKQCYADVSYEPDCYLVFGKETAGL-PVPLLKANR 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
E IRIPM + R LNLS SV I VYEA RQ+ + LKTA
Sbjct: 116 ER----CIRIPMTDE-ARSLNLSNSVAIVVYEALRQMGFNGLKTA 155
>gi|345016683|ref|YP_004819036.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032026|gb|AEM77752.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 156
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV P+IP NTG IARTC + LHLV PLGF +D+ +KRAGLDYWP + + V+
Sbjct: 3 LNVVLVEPEIPQNTGNIARTCVLTGSSLHLVKPLGFSIDEKYVKRAGLDYWPLLNLTVYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F Q +G+K LA TK H E+ Y Y++FG ET+GLP + E
Sbjct: 63 NLEQF---LEQNKGKKFYLATTKAKKYYH-EVKYEDNSYILFGKETAGLPKWLI-----E 113
Query: 199 TFGGGTIRIPMVETY-VRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM E R LNLS SV I +YEA RQL + +K
Sbjct: 114 KYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|373467785|ref|ZP_09559074.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus sp. oral
taxon 851 str. F0397]
gi|371757443|gb|EHO46232.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus sp. oral
taxon 851 str. F0397]
Length = 160
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNKMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|387927561|ref|ZP_10130240.1| rRNA methylase [Bacillus methanolicus PB1]
gi|387589705|gb|EIJ82025.1| rRNA methylase [Bacillus methanolicus PB1]
Length = 157
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 99/165 (60%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVIYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF F++ EG + TK G H+ Y + D Y +FG ET+GLP + L+D
Sbjct: 63 SLEEF---FKKNEGGE-FFYLTKFGLRLHTSFDYSRMDKDYYFVFGRETTGLPKD-LIDQ 117
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ ++RIPM + VR LNLS + I +YEA RQ NY LK
Sbjct: 118 NKDR----SLRIPMNDN-VRSLNLSNTAAILIYEALRQQNYPGLK 157
>gi|416900120|ref|ZP_11929431.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v]
gi|417116735|ref|ZP_11967596.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
1.2741]
gi|422783796|ref|ZP_16836579.1| RNA methyltransferase [Escherichia coli TW10509]
gi|422801561|ref|ZP_16850057.1| RNA methyltransferase [Escherichia coli M863]
gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863]
gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509]
gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v]
gi|386139279|gb|EIG80434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
1.2741]
Length = 157
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HNYAA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|417843909|ref|ZP_12489974.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M21127]
gi|341948372|gb|EGT75002.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M21127]
Length = 160
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFEIGDYLMFGPETRGIPMSILNKMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
JCSC5402]
gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
JCSC5402]
Length = 157
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 14/165 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IAR+CAA+ LHL+ PLGF DD L+RAGLDYW +V I +
Sbjct: 4 INIVLYQPEIPANTGNIARSCAATDTDLHLIRPLGFSTDDKMLRRAGLDYWKFVNITYYD 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF F + +G LL TK G H+ Y D Y IFG ET+GLP D
Sbjct: 64 SIEEF---FEKNKGHYYLL--TKFGKKPHTTFDYSNTDEKHYFIFGKETTGLP-----DW 113
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + +RIPM + VR LNLS + I +YEA RQ NY LK
Sbjct: 114 VKEKYMDTALRIPMNDN-VRSLNLSNTAAILIYEALRQQNYPGLK 157
>gi|416284310|ref|ZP_11647156.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC
9905]
gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC
9905]
Length = 160
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT THS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPTHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 7P49H1]
gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 7P49H1]
Length = 160
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+A F + E +RLLA T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTFAAFLE----SEKPQRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPL 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|46200254|ref|YP_005921.1| RNA methyltransferase [Thermus thermophilus HB27]
gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8]
gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8]
Length = 149
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 99/158 (62%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N G +ART AA LHL+ PLGF + KLKRAGLDYWP+V +++H
Sbjct: 1 MLHLVLYQPEIPQNAGNVARTAAALGWPLHLIRPLGFLLSSPKLKRAGLDYWPHVDLRLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++A F + + R+ AF+ RG ++ E +R+GDYL+FG E+ GLP E L
Sbjct: 61 DSFAAFLEALPRG---ARVFAFSARGEASLYEARFREGDYLLFGPESRGLPEEVLARFP- 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
T++IPM VR LNL+V+VG+A YEA RQL
Sbjct: 117 ------TLKIPMPGP-VRSLNLAVAVGVAAYEAYRQLT 147
>gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021]
gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21]
Length = 160
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ ++ GDYL+FG ET G+P + +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIP----MSILN 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 113 EMPMKQKIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
Length = 168
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H
Sbjct: 4 HIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F + K L TK T+SE++Y G+ Y +FG ET+GL PE +
Sbjct: 64 SAAFLAHV----AGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGL-PETFMRENE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E IRIPM + +VR LNLS + + VYEA RQ N+ L+
Sbjct: 119 E----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLE 157
>gi|291619429|ref|YP_003522171.1| hypothetical protein PANA_3876 [Pantoea ananatis LMG 20103]
gi|378765131|ref|YP_005193590.1| TrmH family RNA methyltransferase [Pantoea ananatis LMG 5342]
gi|386017671|ref|YP_005935969.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355]
gi|386077393|ref|YP_005990918.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis PA13]
gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103]
gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355]
gi|354986573|gb|AER30697.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis PA13]
gi|365184603|emb|CCF07553.1| TrmH family RNA methyltransferase [Pantoea ananatis LMG 5342]
Length = 157
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKFH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F E +RL A T +GT HS ++Y+ GDYL+FG E+ GLP E L +
Sbjct: 61 ADY----QAFIATEQPERLFALTTKGTPAHSAVNYQSGDYLLFGPESRGLPAEILQALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 ----AQKIRIPMMAE-SRSMNLSNAVSVVVYEAWRQLDY 150
>gi|338533244|ref|YP_004666578.1| RNA methyltransferase [Myxococcus fulvus HW-1]
gi|337259340|gb|AEI65500.1| RNA methyltransferase [Myxococcus fulvus HW-1]
Length = 157
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 99/158 (62%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLVSPQIP NTG +AR CA + C L LV PLGF +DD +LKRAGLDYW V ++++
Sbjct: 9 LHLVLVSPQIPPNTGNVARLCAVTGCRLILVEPLGFSIDDRQLKRAGLDYWDKVFLRLYP 68
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+A Y +R L F+ R ++ E + +GD+L+FGSE SGL PE + E
Sbjct: 69 TYAA---YVADHPDARRWL-FSARAATSLYEARFEEGDHLVFGSEVSGLAPEVM-----E 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G + IPM+E R LNLS SVG+ YEA RQ+ +
Sbjct: 120 GGTGTPVTIPMLEDR-RSLNLSTSVGVGTYEALRQVRF 156
>gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase SpoU [Clostridium cellulovorans 743B]
gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
cellulovorans 743B]
gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
Length = 160
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I RTC + LHL+ PLGF+V D +L+RAGLDYW I +
Sbjct: 8 INIVLYQPEIPQNTGNIVRTCVLTNSKLHLIRPLGFEVTDKQLRRAGLDYWKDADISYYD 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ F+ ++ T + T + E+ +++GD+++FG E+SGLP E
Sbjct: 68 SFEELREKFK----DRTFYYSTTKATKYYDEVDFKQGDFIVFGRESSGLPDEI-----RN 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPMV+T +R LNLS +V I YEA RQ+ + +K
Sbjct: 119 SEPDNLIRIPMVKTSLRSLNLSNTVSIVSYEATRQIGFPNMK 160
>gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus
succinogenes 130Z]
Length = 158
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HSE+ + GD+L+FG ET G+P L +
Sbjct: 61 KTF----ERFIESEKPKRLFALTTKGGPAHSEVRFESGDFLMFGPETRGIPMSILDNMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV +AVYEA RQL Y+
Sbjct: 117 ER----KIRIPMTAN-SRSMNLSNSVAVAVYEAWRQLGYQ 151
>gi|424828168|ref|ZP_18252909.1| hypothetical protein IYC_08130 [Clostridium sporogenes PA 3679]
gi|365979651|gb|EHN15704.1| hypothetical protein IYC_08130 [Clostridium sporogenes PA 3679]
Length = 155
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTNSKLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTIYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++++ Y GD+++FG E+SGLP E +
Sbjct: 63 SYEELREKYK----DSNFYFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI-----RD 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 114 SDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQVGFPDMK 155
>gi|403235612|ref|ZP_10914198.1| rRNA methylase (SpoU class) [Bacillus sp. 10403023]
Length = 157
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 101/163 (61%), Gaps = 11/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P++P NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V K+HS
Sbjct: 3 LHVVLYQPELPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFV--KIHS 60
Query: 139 TWAEFRDYF-RQQEGEKRLLA-FTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ +D F + Q+GE L+ + KR S+ RK +LIFGSET+GLP + + +
Sbjct: 61 -YGSIQDLFDKYQDGEFYLITNYGKRTYSSADFRDLRKDHFLIFGSETTGLPMDLIENNI 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
TF R+PM E V LNLS + I VYEA RQ NY +L
Sbjct: 120 DRTF-----RLPMTEN-VGSLNLSNTAAILVYEALRQQNYPEL 156
>gi|383192198|ref|YP_005202326.1| rRNA methylase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371590456|gb|AEX54186.1| rRNA methylase, putative, group 2 [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 157
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFGWDDKRLRRAGLDYHEFANIKHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + + F E +RL A T +GT HS +SY+ D+L+FG ET GLP L +
Sbjct: 61 ANY----EAFLSSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLPASILGSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM R +NLS +V + VYEA RQL Y
Sbjct: 117 QQ----KIRIPM-RAESRSMNLSNAVSVVVYEAWRQLGY 150
>gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase SpoU [Clostridium beijerinckii NCIMB
8052]
gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
Length = 162
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 107/176 (60%), Gaps = 18/176 (10%)
Query: 65 GVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRA 124
G G+ +N L +VL P+IP NTG IARTC + LHL+ PLGF++++ +++RA
Sbjct: 5 GEGDVLN-------LNIVLYEPEIPQNTGNIARTCVLTGSKLHLIKPLGFEINEKQVRRA 57
Query: 125 GLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSET 184
GLDYW + +++H ++ EF + GEK + T G + EIS+++GD+++FG E+
Sbjct: 58 GLDYWKDLDLEIHDSYEEFLKKY----GEKTIYLSTTHGETHFDEISFKEGDFIMFGRES 113
Query: 185 SGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
SG+P E + G R+PM+++ R LNLS +V I YEA RQ+ + +K
Sbjct: 114 SGVPEE----VHNRHIG---FRVPMIKSSTRSLNLSNTVAIVAYEALRQIGFPNMK 162
>gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
Length = 157
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTWDDKRLRRAGLDYHEFASIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F D E RL A T +GT HS ++Y+ D+L+FG ET GLP L +
Sbjct: 61 HDYQAFLD----SEKPDRLFALTTKGTPAHSAVNYQDNDFLLFGPETRGLPASILEALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 117 QQ----KIRIPM-QPNSRSMNLSNAVSVVVYEAWRQLGY 150
>gi|448244496|ref|YP_007408549.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445214860|gb|AGE20530.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 157
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHLIEPLGFPWDDKRLRRAGLDYHEFTRVSRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP + L +
Sbjct: 61 ADYAA----FLAAENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPADILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 117 QQ----KIRIPM-QAQSRSMNLSNAVSVVVYEAWRQLGY 150
>gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
carboxydivorans Nor1]
gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
carboxydivorans Nor1]
Length = 153
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 94/169 (55%), Gaps = 24/169 (14%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VLV P+IPGNTG IAR CAA+ C LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MLHIVLVEPEIPGNTGNIARLCAATCCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYH 60
Query: 138 STWAEFRD-------YFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE 190
+ E D YF + +KR +++I Y GD L+FG ET+GLP E
Sbjct: 61 ENFQEVADRYAGHNFYFNTTKAQKR-----------YTDIRYTAGDVLVFGKETAGLPEE 109
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
L IRIPM+E R LNLS +V + YEA RQL + L
Sbjct: 110 LL-----RANWPNCIRIPMLED-ARSLNLSNAVAVVAYEALRQLGFPGL 152
>gi|424818135|ref|ZP_18243286.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227]
gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227]
Length = 157
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HNYAA----FLKAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|417851575|ref|ZP_12497296.1| hypothetical protein GEW_09222, partial [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
gi|338219162|gb|EGP04857.1| hypothetical protein GEW_09222 [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 173
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 16 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRH 75
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F E KRL A T +G+ HS++ + GDYL+FG E+ G+ P ++LD
Sbjct: 76 KTF----ETFLATEQAKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGI-PMSILDSLP 130
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM E R +NLS SV +AVYEA RQL Y
Sbjct: 131 M---AQKIRIPMTEN-SRSMNLSNSVAVAVYEAWRQLGY 165
>gi|417854314|ref|ZP_12499629.1| hypothetical protein AAUPMG_08916, partial [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|338218211|gb|EGP04000.1| hypothetical protein AAUPMG_08916 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 172
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 15 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRH 74
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F E KRL A T +G+ HS++ + GDYL+FG E+ G+ P ++LD
Sbjct: 75 KTF----ETFLATEQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGI-PMSILDSLP 129
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T IRIPM E R +NLS SV + VYEA RQL Y
Sbjct: 130 MT---QKIRIPMTEN-SRSMNLSNSVAVTVYEAWRQLGY 164
>gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
Length = 155
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 14/158 (8%)
Query: 82 VLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWA 141
+L PQIP NTG +ARTCAA+A LHLVGPLGF++ D L+RAGLDYWPYV + +H+ W
Sbjct: 1 MLYQPQIPPNTGNVARTCAATAQELHLVGPLGFEISDRTLRRAGLDYWPYVPLTLHADWP 60
Query: 142 EFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFG 201
F +Q G RL+A + G + ++ ++ D+L+FG E+ GLP E L +
Sbjct: 61 AFTGVQGRQGG--RLVALSAHGITPYTAFRFQPDDWLLFGRESDGLPAEPLQRADA---- 114
Query: 202 GGTIRIPM------VETYVRCLNLSVSVGIAVYEAARQ 233
+ IPM E VR LNLSV+VG+ ++EA RQ
Sbjct: 115 --VLTIPMRRSRHHPEGGVRSLNLSVAVGVVLFEALRQ 150
>gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cytotoxicus NVH 391-98]
gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus
NVH 391-98]
Length = 162
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 95/164 (57%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ GLHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 3 VNVVLYQPEIPANTGNIARTCAATGAGLHLIRPLGFSTDDKMLKRAGLDYWEHVKITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
+ EF Y + Q+GE TK G H+ Y K Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNQDGE--FFYLTKYGEKAHTAFDYSNPEKNYYFVFGRETNGLPA----NI 114
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E F +RIPM + VR LNLS + I VYEA RQ NY L
Sbjct: 115 IQENF-DHCLRIPMTDK-VRSLNLSNTAAILVYEAFRQQNYPGL 156
>gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909]
gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909]
Length = 165
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60
Query: 138 STWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F D + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 61 HDYQAFLDCENLDSAQPARLFALTTKGTPAHSAVSYQADDYLLFGPETRGLPASVLDALP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 AQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155
>gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
15176]
gi|282571380|gb|EFB76915.1| putative RNA methyltransferase, TrmH family, group 2
[Subdoligranulum variabile DSM 15176]
Length = 169
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV PQIP N+G IARTCA + LH+VGP+GF +DD KLKRAGLDYW + I +
Sbjct: 4 VNIVLVEPQIPQNSGNIARTCAVTGARLHMVGPMGFAIDDKKLKRAGLDYWHQLDI---T 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ + D+F + +G FT +G H ++ Y G YL+FG E +GLP E L+ ++
Sbjct: 61 YYKDLADFFSKNKGP--FFYFTSKGPRRHVDVQYPDGAYLVFGREDAGLPEELLVRHEAD 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+R+PM RCLNLS +V + VYE RQ ++ L+T
Sbjct: 119 -----CVRMPMRRGE-RCLNLSNAVAVGVYEVLRQWDFAGLET 155
>gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
ATCC 49175]
gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
ATCC 49175]
Length = 169
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H +
Sbjct: 5 HIVLFEPQIPANTGNIARTCAATNSPLHLIEPLGFSTDDKHLKRAGLDYWHDVDITYHKS 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F DY GE+ L TK T+ E+ + + + +FG ET+GLP E + +
Sbjct: 65 MEAFLDYL----GERPLYLITKFANHTYDEVDLARDEEQFFMFGKETTGLPEEFMRENEE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +R+PM +T+VR LNLS + I VYEA RQ + L+
Sbjct: 121 K-----CLRLPMNDTHVRSLNLSNTAAIVVYEALRQQRFAGLE 158
>gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
Bf]
gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657]
gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
Bf]
gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
Length = 155
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++++ Y GD+++FG E+SGLP E +
Sbjct: 63 SYEELREKYK----DSNFYFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI-----RD 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 114 SDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQVGFPDMK 155
>gi|428219616|ref|YP_007104081.1| tRNA/rRNA methyltransferase SpoU [Pseudanabaena sp. PCC 7367]
gi|427991398|gb|AFY71653.1| tRNA/rRNA methyltransferase (SpoU) [Pseudanabaena sp. PCC 7367]
Length = 154
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 13/160 (8%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
N+ L VVLV P+IP NTG IARTCAAS LHLV P+ F + D +KRAGLDYWPYV +
Sbjct: 5 NNQMLNVVLVYPEIPPNTGNIARTCAASQTPLHLVEPINFDISDRAVKRAGLDYWPYVDL 64
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
H +D R + F+ GT SE +Y+ D+L+FGSE+SGLP L
Sbjct: 65 HTH------KDLDALAAVSGRWICFSAHGTQHFSEFNYQPNDWLLFGSESSGLPKSVLA- 117
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
++ IP+ VR LNLSV V + ++EA RQL
Sbjct: 118 ------AHESVYIPIAHPKVRSLNLSVCVALGLFEAKRQL 151
>gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
Length = 165
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV PQIP NTG I+RTCA + LHLV PLGF+V D LKRAGLDYW + I +
Sbjct: 4 LNIVLVEPQIPQNTGNISRTCAVTGARLHLVRPLGFEVSDKHLKRAGLDYWDKLDITYYD 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++F D + ++G FT +G HS+I Y YLIFG E GLP L D
Sbjct: 64 DLSDFFD--KNKDGH--FYYFTTKGLHVHSDIDYPDNSYLIFGREDKGLPESLLHDNP-- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
G RIPM +R LNLS SV IAVYE RQ +Y L
Sbjct: 118 ---GFCARIPM-RNELRSLNLSNSVAIAVYEVLRQWDYPDL 154
>gi|417845058|ref|ZP_12491091.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M21639]
gi|341955950|gb|EGT82395.1| putative methyltransferase-like protein [Haemophilus haemolyticus
M21639]
Length = 160
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS + + GDYL+FG ET G+P L +
Sbjct: 61 KTF----ETFLESEKPKRLFALTTKGSPAHSLVKFELGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL YE
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYE 151
>gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittAA]
gi|419838803|ref|ZP_14362223.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus
haemolyticus HK386]
gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittAA]
gi|386910031|gb|EIJ74693.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus
haemolyticus HK386]
Length = 160
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|429098647|ref|ZP_19160753.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter dublinensis
582]
gi|426284987|emb|CCJ86866.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter dublinensis
582]
Length = 157
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F++ E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 RDYAA----FKEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDVLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 PEL---KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|383311368|ref|YP_005364178.1| RNA methyltransferase [Pasteurella multocida subsp. multocida str.
HN06]
gi|425066396|ref|ZP_18469516.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pasteurella multocida
subsp. gallicida P1059]
gi|380872640|gb|AFF25007.1| RNA methyltransferase [Pasteurella multocida subsp. multocida str.
HN06]
gi|404381612|gb|EJZ78081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pasteurella multocida
subsp. gallicida P1059]
Length = 158
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F E KRL A T +G+ HS++ + GDYL+FG E+ G+ P ++LD
Sbjct: 61 KTF----EIFLATEQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGI-PMSILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM E R +NLS SV +AVYEA RQL Y
Sbjct: 116 M---AQKIRIPMTEN-SRSMNLSNSVAVAVYEAWRQLGY 150
>gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str.
Langeland]
gi|384460659|ref|YP_005673254.1| TrmH family RNA methyltransferase [Clostridium botulinum F str.
230613]
gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
F str. Langeland]
gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
F str. 230613]
Length = 155
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++++ Y GD+++FG E+SGLP E +
Sbjct: 63 SYEELREKYK----DSNFYFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDE-----IKD 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V + YEA RQ+ + +K
Sbjct: 114 SDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQVGFPDMK 155
>gi|68249362|ref|YP_248474.1| RNA methyltransferase [Haemophilus influenzae 86-028NP]
gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittII]
gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
gi|386266502|ref|YP_005829994.1| Putative RNA methylase [Haemophilus influenzae R2846]
gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 86-028NP]
gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittII]
gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866]
gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846]
gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
Length = 160
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|384550672|ref|YP_005739924.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 156
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FETTNGEYYLL--TKFGKKTYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E ++R LNLS + + +YEA RQ N+ L
Sbjct: 114 KEKYQDTALRIPMSE-HIRSLNLSNTAALLIYEALRQQNFPGL 155
>gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9719]
gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819]
gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796]
gi|415691672|ref|ZP_11453762.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus CGS03]
gi|417651019|ref|ZP_12300782.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21172]
gi|418434676|ref|ZP_13006566.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS4]
gi|418437473|ref|ZP_13009262.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS5]
gi|418443383|ref|ZP_13014980.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS7]
gi|418446451|ref|ZP_13017920.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS8]
gi|418455273|ref|ZP_13026528.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418458148|ref|ZP_13029344.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418638853|ref|ZP_13201128.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654883|ref|ZP_13216775.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-99]
gi|418881541|ref|ZP_13435757.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418920880|ref|ZP_13474811.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418991787|ref|ZP_13539447.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419784810|ref|ZP_14310572.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus IS-M]
gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus JH9]
gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus JH1]
gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9719]
gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819]
gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796]
gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus CGS03]
gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21172]
gi|375014189|gb|EHS07886.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-99]
gi|375020330|gb|EHS13866.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-3]
gi|377721923|gb|EHT46052.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377730882|gb|EHT54948.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377763735|gb|EHT87590.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC348]
gi|383363779|gb|EID41106.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus IS-M]
gi|387724248|gb|EIK11913.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS4]
gi|387726382|gb|EIK13947.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS5]
gi|387733872|gb|EIK21031.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS8]
gi|387736140|gb|EIK23243.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS7]
gi|387743916|gb|EIK30699.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387745951|gb|EIK32698.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS11b]
Length = 156
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 95/163 (58%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FEATNGEYYLL--TKFGKKTYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + T+RIPM E ++R LNLS + + +YEA RQ ++ L
Sbjct: 114 KEKYQDTTLRIPMSE-HIRSLNLSNTAALLIYEALRQQDFPGL 155
>gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
Length = 153
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVLV P+IP NTG IAR C A+ LHLV PLGF DD LKRAGLDYW +V I VH W
Sbjct: 8 VVLVEPEIPPNTGSIARLCGATDTVLHLVHPLGFDTDDKHLKRAGLDYWQHVRI-VH--W 64
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+ ++ Q+ E RL +K+ ++ IS+ GD+LIFG ET GLP E L E +
Sbjct: 65 SNLEEFLAAQD-ENRLYFLSKKTQRPYTAISFTPGDFLIFGRETKGLPAEIL-----ELY 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ IPM ++R LNL+ + I +YEA RQ
Sbjct: 119 ADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQ 151
>gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
gi|392939170|ref|ZP_10304814.1| rRNA methylase, putative, group 2 [Thermoanaerobacter siderophilus
SR4]
gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
gi|392290920|gb|EIV99363.1| rRNA methylase, putative, group 2 [Thermoanaerobacter siderophilus
SR4]
Length = 156
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV P+IP NTG IARTC + LHLV PLGF +D+ +KRAGLDYWP + + V+
Sbjct: 3 LNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F Q +G+K LA TK H E+ Y Y++FG ET+GLP + E
Sbjct: 63 NLEQF---LEQNKGKKFYLATTKAKKYYH-EVKYEDNSYILFGKETAGLPKWLI-----E 113
Query: 199 TFGGGTIRIPMVETY-VRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM E R LNLS SV I +YEA RQL + +K
Sbjct: 114 KYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
15579]
gi|187774123|gb|EDU37925.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sporogenes
ATCC 15579]
Length = 160
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 8 LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTIYE 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++++ Y GD+++FG E+SGLP E +
Sbjct: 68 SYEELREKYK----DSNFYFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEI-----RD 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 119 SDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQVGFPDMK 160
>gi|197251230|ref|YP_002148627.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440765785|ref|ZP_20944797.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|440767347|ref|ZP_20946326.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|440773428|ref|ZP_20952323.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|436411436|gb|ELP09387.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|436415914|gb|ELP13828.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|436420299|gb|ELP18165.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
Length = 157
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS SV + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPD-SRSMNLSNSVSVVVYEAWRQLGY 150
>gi|45439935|ref|NP_991474.1| methyltransferase [Yersinia pestis biovar Microtus str. 91001]
gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua]
gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516]
gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F]
gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola]
gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1]
gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
gi|218927290|ref|YP_002345165.1| methyltransferase [Yersinia pestis CO92]
gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516]
gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
D27]
gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003]
gi|384120657|ref|YP_005503277.1| putative methyltransferase [Yersinia pestis D106004]
gi|384124536|ref|YP_005507150.1| putative methyltransferase [Yersinia pestis D182038]
gi|384137946|ref|YP_005520648.1| putative methyltransferase [Yersinia pestis A1122]
gi|384412919|ref|YP_005622281.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420544220|ref|ZP_15042482.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-01]
gi|420549770|ref|ZP_15047431.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-02]
gi|420554922|ref|ZP_15052040.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-03]
gi|420560638|ref|ZP_15056990.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-04]
gi|420565903|ref|ZP_15061734.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-05]
gi|420571333|ref|ZP_15066679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-06]
gi|420576474|ref|ZP_15071327.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-07]
gi|420582224|ref|ZP_15076552.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-08]
gi|420587348|ref|ZP_15081188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-09]
gi|420592660|ref|ZP_15085961.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-10]
gi|420598334|ref|ZP_15091050.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-11]
gi|420603895|ref|ZP_15096001.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-12]
gi|420609228|ref|ZP_15100846.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-13]
gi|420614494|ref|ZP_15105538.1| spoU rRNA Methylase family protein [Yersinia pestis PY-14]
gi|420619923|ref|ZP_15110271.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-15]
gi|420624995|ref|ZP_15114866.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-16]
gi|420630141|ref|ZP_15119539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-19]
gi|420635270|ref|ZP_15124127.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-25]
gi|420640633|ref|ZP_15128961.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-29]
gi|420651020|ref|ZP_15138388.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-32]
gi|420651678|ref|ZP_15138965.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-34]
gi|420657095|ref|ZP_15143858.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-36]
gi|420662445|ref|ZP_15148630.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-42]
gi|420672369|ref|ZP_15157634.1| spoU rRNA Methylase family protein [Yersinia pestis PY-45]
gi|420672761|ref|ZP_15157983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-46]
gi|420678261|ref|ZP_15162988.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-47]
gi|420683492|ref|ZP_15167690.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-48]
gi|420693988|ref|ZP_15176958.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-52]
gi|420694461|ref|ZP_15177364.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-53]
gi|420705627|ref|ZP_15186611.1| spoU rRNA Methylase family protein [Yersinia pestis PY-54]
gi|420705900|ref|ZP_15186852.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-55]
gi|420711161|ref|ZP_15191632.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-56]
gi|420716530|ref|ZP_15196395.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-58]
gi|420722183|ref|ZP_15201202.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-59]
gi|420727847|ref|ZP_15206236.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-60]
gi|420737795|ref|ZP_15215219.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-61]
gi|420738395|ref|ZP_15215749.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-63]
gi|420743614|ref|ZP_15220433.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-64]
gi|420749521|ref|ZP_15225378.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-65]
gi|420754536|ref|ZP_15229898.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-66]
gi|420760701|ref|ZP_15234776.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-71]
gi|420765687|ref|ZP_15239292.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-72]
gi|420770889|ref|ZP_15243945.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-76]
gi|420776209|ref|ZP_15248751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-88]
gi|420781679|ref|ZP_15253553.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-89]
gi|420787145|ref|ZP_15258335.1| spoU rRNA Methylase family protein [Yersinia pestis PY-90]
gi|420792588|ref|ZP_15263244.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-91]
gi|420797717|ref|ZP_15267847.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-92]
gi|420803107|ref|ZP_15272700.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-93]
gi|420808276|ref|ZP_15277384.1| spoU rRNA Methylase family protein [Yersinia pestis PY-94]
gi|420814064|ref|ZP_15282558.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-95]
gi|420818819|ref|ZP_15286901.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-96]
gi|420829229|ref|ZP_15296242.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-98]
gi|420829912|ref|ZP_15296841.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-99]
gi|420834937|ref|ZP_15301373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-100]
gi|420844996|ref|ZP_15310500.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-101]
gi|420845678|ref|ZP_15311104.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-102]
gi|420850993|ref|ZP_15315862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-103]
gi|420856464|ref|ZP_15320445.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-113]
gi|421761494|ref|ZP_16198294.1| putative rRNA methylase [Yersinia pestis INS]
gi|123777848|sp|Q74Y93.1|TRML_YERPE RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
91001]
gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516]
gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua]
gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92]
gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F]
gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
pseudotuberculosis IP 31758]
gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis
Angola]
gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
pseudotuberculosis YPIII]
gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516]
gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004]
gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038]
gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
D27]
gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003]
gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853075|gb|AEL71628.1| putative methyltransferase [Yersinia pestis A1122]
gi|391434439|gb|EIQ95633.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-01]
gi|391434485|gb|EIQ95672.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-02]
gi|391439047|gb|EIQ99738.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-03]
gi|391450230|gb|EIR09882.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-05]
gi|391450477|gb|EIR10109.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-04]
gi|391452345|gb|EIR11756.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-06]
gi|391467029|gb|EIR25052.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-07]
gi|391467124|gb|EIR25139.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-08]
gi|391469421|gb|EIR27201.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-09]
gi|391483098|gb|EIR39492.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-10]
gi|391483612|gb|EIR39956.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-12]
gi|391484075|gb|EIR40378.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-11]
gi|391497919|gb|EIR52734.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-13]
gi|391498718|gb|EIR53449.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-15]
gi|391502139|gb|EIR56466.1| spoU rRNA Methylase family protein [Yersinia pestis PY-14]
gi|391513471|gb|EIR66682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-16]
gi|391514960|gb|EIR68024.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-19]
gi|391516387|gb|EIR69286.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-25]
gi|391517390|gb|EIR70202.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-32]
gi|391529633|gb|EIR81302.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-29]
gi|391531938|gb|EIR83386.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-34]
gi|391535135|gb|EIR86242.1| spoU rRNA Methylase family protein [Yersinia pestis PY-45]
gi|391546182|gb|EIR96198.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-36]
gi|391547910|gb|EIR97759.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-42]
gi|391562076|gb|EIS10528.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-46]
gi|391563036|gb|EIS11390.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-52]
gi|391563217|gb|EIS11552.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-47]
gi|391565378|gb|EIS13497.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-48]
gi|391567014|gb|EIS14930.1| spoU rRNA Methylase family protein [Yersinia pestis PY-54]
gi|391578220|gb|EIS24523.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-53]
gi|391589452|gb|EIS34343.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-55]
gi|391593665|gb|EIS37941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-56]
gi|391606563|gb|EIS49283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-60]
gi|391608385|gb|EIS50875.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-58]
gi|391608427|gb|EIS50911.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-61]
gi|391609074|gb|EIS51508.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-59]
gi|391621995|gb|EIS62974.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-63]
gi|391630469|gb|EIS70228.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-64]
gi|391632427|gb|EIS71949.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-65]
gi|391643874|gb|EIS81997.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-71]
gi|391646964|gb|EIS84653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-72]
gi|391650267|gb|EIS87567.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-66]
gi|391656451|gb|EIS93091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-76]
gi|391663421|gb|EIS99260.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-88]
gi|391668537|gb|EIT03763.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-89]
gi|391669970|gb|EIT05057.1| spoU rRNA Methylase family protein [Yersinia pestis PY-90]
gi|391673274|gb|EIT08012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-91]
gi|391687540|gb|EIT20837.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-93]
gi|391689332|gb|EIT22474.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-92]
gi|391690449|gb|EIT23475.1| spoU rRNA Methylase family protein [Yersinia pestis PY-94]
gi|391692142|gb|EIT25007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-98]
gi|391701793|gb|EIT33753.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-95]
gi|391705727|gb|EIT37239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-96]
gi|391706898|gb|EIT38295.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-101]
gi|391716977|gb|EIT47385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-99]
gi|391721050|gb|EIT51025.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-100]
gi|391731927|gb|EIT60559.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-102]
gi|391734856|gb|EIT63080.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-103]
gi|391737863|gb|EIT65714.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Yersinia
pestis PY-113]
gi|411177816|gb|EKS47828.1| putative rRNA methylase [Yersinia pestis INS]
Length = 162
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60
Query: 138 STWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F D + + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 61 HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 AQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155
>gi|357011110|ref|ZP_09076109.1| CspR [Paenibacillus elgii B69]
Length = 154
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 10/160 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLV P+IP NTG I+RTCAA+ LHLV PLGF DD LKRAGLDYW V ++ H +
Sbjct: 4 HIVLVEPEIPANTGNISRTCAATGTWLHLVRPLGFNTDDRTLKRAGLDYWHAVKLEYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ E +D ++ + R T + + +++++++ GD+L+FG ET GL PE L +
Sbjct: 64 FQEVKDKYK----DGRFFFATTKASKVYTDLTFQDGDFLVFGKETKGLAPEILAEHPD-- 117
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+R+PM + VR LNLS + I ++EA RQ + +L
Sbjct: 118 ---SLMRLPMTDA-VRSLNLSNAAAIVLFEALRQSGFPEL 153
>gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
curdlanolyticus YK9]
gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
curdlanolyticus YK9]
Length = 155
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 93/158 (58%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG IARTCAA+ LHLV PLGF+ DD LKRAGLDYW V + +
Sbjct: 3 FHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLKRAGLDYWYAVNLTYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+++E + F+ R + R +S+ Y+ GD +FG ET GLP E LLD
Sbjct: 63 SFSEVEERFKGH----RFFYASTRANKRYSDFEYKDGDLFVFGKETKGLPQE-LLDANPN 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IR+PM + VR LNL+ S I VYEA RQ ++
Sbjct: 118 QL----IRMPMTDK-VRSLNLANSAAIVVYEALRQTDF 150
>gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
Length = 167
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 10/166 (6%)
Query: 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKV 136
K L +VL+ P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYWP V +
Sbjct: 3 KPLHIVLIEPEIPGNTGNIARLCAGTGIELHLVRPLGFSTDDKHLKRAGLDYWPLVKVHY 62
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
H +AE ++ + + + +++E+ Y D L+FG E++G+ PE +L
Sbjct: 63 HDNFAEVQERY----AGHNFYYLSTKAPRSYTEVHYTMDDMLVFGKESAGI-PEPILKAN 117
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
E +RIPM+ R LNLS SV + YEA RQ++++ L A
Sbjct: 118 WEH----CVRIPMIPE-ARSLNLSNSVAVVAYEAMRQMDFQNLAEA 158
>gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953]
gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
pseudotuberculosis PB1/+]
Length = 162
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60
Query: 138 STWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F D + + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 61 HDYQAFLDSEKLDSTQLARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 AQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155
>gi|259906785|ref|YP_002647141.1| tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae Ep1/96]
gi|385786723|ref|YP_005817832.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617]
gi|387869488|ref|YP_005800858.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae
Ep1/96]
gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617]
Length = 156
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 9/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I R CA + LH++ PLGF DD +L+RAGLDY + I+ H+
Sbjct: 1 MHIVLFEPEIPPNTGNIIRLCANTGFQLHVIEPLGFAWDDKRLRRAGLDYHEFAAIRHHA 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ + F E +RL A T +GT HS +S++ GDYL+FG ET GLP L ++
Sbjct: 61 SY----EAFAASEAPQRLFALTTKGTPAHSAVSFQAGDYLLFGPETRGLPARVLDALPAQ 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL+Y
Sbjct: 117 Q----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLDY 149
>gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378775366|ref|YP_005177609.1| putative tRNA/rRNA methyltransferase [Pasteurella multocida 36950]
gi|386835388|ref|YP_006240706.1| TrmH family RNA methyltransferase [Pasteurella multocida subsp.
multocida str. 3480]
gi|425064235|ref|ZP_18467360.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pasteurella multocida
subsp. gallicida X73]
gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597914|gb|AET16640.1| putative tRNA/rRNA methyltransferase [Pasteurella multocida 36950]
gi|385202092|gb|AFI46947.1| RNA methyltransferase, TrmH family, group 2 [Pasteurella multocida
subsp. multocida str. 3480]
gi|404381409|gb|EJZ77883.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pasteurella multocida
subsp. gallicida X73]
Length = 158
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F E KRL A T +G+ HS++ + GDYL+FG E+ G+ P ++LD
Sbjct: 61 KTF----ETFLATEQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGI-PMSILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM E R +NLS SV +AVYEA RQL Y
Sbjct: 116 M---AQKIRIPMTEN-SRSMNLSNSVAVAVYEAWRQLGY 150
>gi|420263199|ref|ZP_14765838.1| TrmH family RNA methyltransferase [Enterococcus sp. C1]
gi|394769833|gb|EJF49667.1| TrmH family RNA methyltransferase [Enterococcus sp. C1]
Length = 167
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD +LKRAGLDYW V I H
Sbjct: 3 HIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F D+ GE+ L +K +S++ Y D + IFG ET+GL PE+ + +
Sbjct: 63 LATFMDFL----GERPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL-PESFMREHA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + +YE RQ + QL+
Sbjct: 118 EK----CLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQLE 156
>gi|440781376|ref|ZP_20959718.1| tRNA-methylase [Clostridium pasteurianum DSM 525]
gi|440220981|gb|ELP60187.1| tRNA-methylase [Clostridium pasteurianum DSM 525]
Length = 160
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 101/162 (62%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ LKRAGLDYW + +KV+
Sbjct: 8 LNIVLFQPEIPQNTGNIARTCVLTNSKLHLIRPLGFSLDEKHLKRAGLDYWDQLDMKVYE 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R ++ + T +G + + ++ +++GD+++FG E+ GLP E + D E
Sbjct: 68 SFEELRQLYKNSD----FYFSTTKGKNYYDDVHFKQGDFIVFGRESCGLPDE-IRDSDPE 122
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IR+PM++T +R LNLS +V I YE RQ+ ++ +K
Sbjct: 123 K----CIRVPMIKTSLRSLNLSNTVAIVAYEGLRQIGFKNMK 160
>gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
ATCC 23685]
gi|451966250|ref|ZP_21919504.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Edwardsiella tarda NBRC
105688]
gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
ATCC 23685]
gi|451315029|dbj|GAC64866.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Edwardsiella tarda NBRC
105688]
Length = 157
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDYHEFADIRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L + +
Sbjct: 61 HDYAT----FLASECPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPATILDNLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ + R +NLS +V + VYEA RQL Y
Sbjct: 117 QQ----KIRIPMLAS-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|385799717|ref|YP_005836121.1| TrmH family RNA methyltransferase [Halanaerobium praevalens DSM
2228]
gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
praevalens DSM 2228]
Length = 161
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTCA + LHLV PLGF D LKRAGLDYW + +K +
Sbjct: 1 MNIVLVEPEIPQNTGNIARTCAVTNSTLHLVRPLGFSTSDKYLKRAGLDYWDKLDVKYYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F + + ++G R T + +++S++ Y DY +FG ET+GL PE+LL+ +
Sbjct: 61 NLTDF--FIKNKDG--RFFYATTKAPNSYSDLEYEADDYFLFGKETAGL-PESLLESNLD 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IRIPM + +R LNLS SV I +YEA RQ N+ L
Sbjct: 116 K----AIRIPMKDD-LRSLNLSNSVSIIIYEALRQNNFINL 151
>gi|297616863|ref|YP_003702022.1| TrmH family RNA methyltransferase [Syntrophothermus lipocalidus DSM
12680]
gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
lipocalidus DSM 12680]
Length = 152
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVLV P+IP NTG +ARTCA + LHLV PLGF ++D LKRAGLDYW V +KV
Sbjct: 1 MHVVLVEPEIPQNTGNVARTCALTQTTLHLVKPLGFSLEDRYLKRAGLDYWDKVEVKV-- 58
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F + G LA TK ++++ Y+KGD+++FG ET GLP E L E
Sbjct: 59 -WDSFDNLLAVYPGRSYFLATTK-SKQRYTDVRYKKGDFIVFGKETQGLPGELL-----E 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
F IRIPMV+ R LNLS +V + ++EA RQ + L+
Sbjct: 112 RFSQSLIRIPMVDIG-RSLNLSNAVAVVLFEALRQQGFPGLR 152
>gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380]
gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380]
Length = 172
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 94/170 (55%), Gaps = 16/170 (9%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60
Query: 138 STWAEFRDYFRQQEGEK-----------RLLAFTKRGTSTHSEISYRKGDYLIFGSETSG 186
+ F D + RL A T +GT HS +SY+ DYL+FG ET G
Sbjct: 61 HDYQAFLDSENLDGAQSVSNESTGTESARLFALTTKGTPAHSAVSYQINDYLLFGPETRG 120
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
LPP L ++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 LPPNVLDALPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 165
>gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 3655]
gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG]
gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 3655]
gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae PittGG]
Length = 160
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPL 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia
psychrerythraea 34H]
Length = 154
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL PQIP NTG I R CA S LHL+ PLGF +DD KL+RAGLDY + I+ H
Sbjct: 1 MLDVVLFQPQIPPNTGNIIRLCANSGFRLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + + F ++E KR+LA T + + + +IS+ GDYL+FGSET+GLP E
Sbjct: 61 ANF----NAFLEKEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEVRAQIPD 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +RIPM++ R +NLS + + VY+A RQL +
Sbjct: 117 EN----KLRIPMLKE-SRSMNLSNATAVIVYDAWRQLGF 150
>gi|405365052|ref|ZP_11026498.1| tRNA (cytosine34-2'-O-)-methyltransferase [Chondromyces apiculatus
DSM 436]
gi|397089617|gb|EJJ20526.1| tRNA (cytosine34-2'-O-)-methyltransferase [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 157
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 99/159 (62%), Gaps = 12/159 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLVSPQIP NTG +AR CA + L LV PLGF +DD +LKRAGLDYW V ++++
Sbjct: 9 LHLVLVSPQIPPNTGNVARLCAVTGSRLILVEPLGFSIDDRQLKRAGLDYWDKVFLRLYP 68
Query: 139 TWAEF-RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+A + DY E R F+ R ++ E + +GD+L+FGSE SGL PE + T
Sbjct: 69 TYAAYVADY-----PEARRWLFSARAATSLYEARFEEGDHLVFGSEVSGLAPEVMEGGT- 122
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G + IPM+E R LNLS SVGI YEA RQ+ +
Sbjct: 123 ----GTAVTIPMLEDR-RSLNLSTSVGIGTYEALRQVRF 156
>gi|422807541|ref|ZP_16855971.1| RNA methyltransferase [Escherichia fergusonii B253]
gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253]
Length = 157
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HNYAA----FLKAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|388544543|ref|ZP_10147830.1| RNA-methyltransferase [Pseudomonas sp. M47T1]
gi|388277240|gb|EIK96815.1| RNA-methyltransferase [Pseudomonas sp. M47T1]
Length = 151
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+GF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPIGFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ E+S+ GD +FG E+ GLPPE L S
Sbjct: 61 ADLASCLESL----GNPRLFAFTTKGSKPFHEVSFADGDAFLFGPESRGLPPEVLDPLGS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ +R+PM E R LNLS +V IAVYEA RQL +
Sbjct: 117 DQ----RLRLPMREG-CRSLNLSNTVAIAVYEAWRQLGF 150
>gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
Length = 236
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD +LKRAGLDYW V I H
Sbjct: 72 HIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 131
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F D+ GE+ L +K +S++ Y D + IFG ET+GL PE+ + +
Sbjct: 132 LATFMDFL----GERPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL-PESFMREHA 186
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + +YE RQ + QL+
Sbjct: 187 E----KCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQLE 225
>gi|238921657|ref|YP_002935172.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella ictaluri
93-146]
gi|238871226|gb|ACR70937.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella ictaluri
93-146]
Length = 157
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 97/161 (60%), Gaps = 13/161 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFIWDDKRLRRAGLDYHEFASIRRH 60
Query: 138 STWAEFRDYFRQQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
++ F GEK RL A T +GT HS+++YR GDYL+FG ET GL P +LD
Sbjct: 61 HDYSSF------LSGEKPTRLFALTTKGTPAHSDVTYRDGDYLLFGPETRGL-PSTILDS 113
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ + R +NLS +V + VYEA RQL Y
Sbjct: 114 LPT---AQKIRIPMLAS-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC
3502]
gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC
19397]
gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall]
gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra]
gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch
Maree]
gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto]
gi|421839312|ref|ZP_16272920.1| hypothetical protein CFSAN001627_26403 [Clostridium botulinum
CFSAN001627]
gi|429243991|ref|ZP_19207473.1| hypothetical protein CFSAN001628_000780 [Clostridium botulinum
CFSAN001628]
gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
19397]
gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
Maree]
gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str.
Kyoto]
gi|409735000|gb|EKN36657.1| hypothetical protein CFSAN001627_26403 [Clostridium botulinum
CFSAN001627]
gi|428758911|gb|EKX81302.1| hypothetical protein CFSAN001628_000780 [Clostridium botulinum
CFSAN001628]
Length = 155
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++++ Y GD+++FG E+SGLP E +
Sbjct: 63 SYEELREKYK----DSNFYFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDE-----IRD 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PM+ T R LNLS +V + YEA RQ+ + +K
Sbjct: 114 SDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQVGFPDMK 155
>gi|399546258|ref|YP_006559566.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Marinobacter sp.
BSs20148]
gi|399161590|gb|AFP32153.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Marinobacter sp.
BSs20148]
Length = 154
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 15/162 (9%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF ++D +++RAGLDY Y +KVH
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGCKLHLIEPLGFTLEDKQMRRAGLDYSEYASVKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPP---EALLD 194
++ F Q E +RL T +G+ + E+SY +GDYL+FG ET GLP +AL D
Sbjct: 61 KSYPA----FLQSEQPQRLFGLTTKGSHYYHEVSYHEGDYLMFGPETRGLPAPVRDALAD 116
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G +R+PM + R LNLS + + VYEA RQL +
Sbjct: 117 -------GHCLRVPMC-AHSRSLNLSNTAALVVYEAWRQLAF 150
>gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 157
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT+ HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTAAHSAVSYQDGDYLMFGPETRGLPASILDALPK 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|16272707|ref|NP_438925.1| RNA methyltransferase [Haemophilus influenzae Rd KW20]
gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021]
gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW]
gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127]
gi|1176303|sp|P44868.1|TRML_HAEIN RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
Methyltransferase (Spou)
gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
Methyltransferase With A Cofactor Bound At A Site Formed
By A Knot
gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021]
gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW]
gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127]
Length = 160
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HS++ ++ GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21]
gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21]
Length = 160
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HS++ ++ GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|424799288|ref|ZP_18224830.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter sakazakii
696]
gi|429106769|ref|ZP_19168638.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter malonaticus
681]
gi|423235009|emb|CCK06700.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter sakazakii
696]
gi|426293492|emb|CCJ94751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter malonaticus
681]
Length = 157
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 ADYAA----FLEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 QE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 6P18H1]
gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
influenzae 6P18H1]
Length = 160
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G+ HS++ + GDYL+FG ET G+P + +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIP----MSILN 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 113 EMPMKQKIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>gi|410457346|ref|ZP_11311159.1| hypothetical protein BABA_25656 [Bacillus bataviensis LMG 21833]
gi|409925254|gb|EKN62472.1| hypothetical protein BABA_25656 [Bacillus bataviensis LMG 21833]
Length = 157
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 94/164 (57%), Gaps = 13/164 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW YV I + +
Sbjct: 4 HVVLYQPQIPSNTGNIARTCAGTDTSLHLIRPLGFSTDDKMLKRAGLDYWEYVNITYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
EF F + G TK G +S Y K Y IFG ET+GLP E +++
Sbjct: 64 LEEF---FEKNAG-GEFFYITKFGEKQYSSFDYSNPSKDYYFIFGRETTGLPKE-VIEKN 118
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
ET +RIPM E ++R LNLS + I +YEA RQ N+ LK
Sbjct: 119 KET----ALRIPMTE-HIRSLNLSNTAAILIYEALRQQNFAHLK 157
>gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
Length = 190
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG I+RTCA + LH+V P GF++DD KLKRAGLDYW + I +
Sbjct: 27 LNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAGLDYWDKLDIYYYD 86
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCT 196
D+F + EGE FT +G HS+ +Y K Y++FG E +GLP E L
Sbjct: 87 N---LEDFFAKNEGE--FYFFTTKGRKVHSDAAYPEDKPVYIVFGREDAGLPEELLYAHP 141
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM T +R LNLS SV IA YE RQ +Y L
Sbjct: 142 EE-----CVRIPMRNT-LRSLNLSNSVAIATYEVLRQWDYPDL 178
>gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4]
gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4]
Length = 169
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 101/173 (58%), Gaps = 12/173 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+ L PQIP NTG IARTCAA+ LHL+ PLGFQ DD LKRAGLDYW V I H
Sbjct: 4 HIALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITYHKN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGD-YLIFGSETSGLPPEALLDCT 196
A F + Q G+ L+ TK G +S++ Y +GD Y +FG ET+GLP E + +
Sbjct: 64 LAAFMEV--AQNGQLHLI--TKFGHRVYSDVDYATTEGDHYFLFGKETTGLPEEFMREHE 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LNLS + I +YEA RQ ++ ++ + D+
Sbjct: 120 ED-----CLRIPMNDEHVRSLNLSNTAAILIYEALRQQGFKDMELSHHYDNDK 167
>gi|312143853|ref|YP_003995299.1| TrmH family RNA methyltransferase [Halanaerobium hydrogeniformans]
gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
hydrogeniformans]
Length = 168
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 97/161 (60%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTCA + LHL+ PLGF D LKRAGLDYW + I +
Sbjct: 1 MNIVLVEPEIPQNTGNIARTCAVTDSALHLIRPLGFSTSDKHLKRAGLDYWHKLDINYYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ EF F++ + + A TK S H E+ Y+ DY +FG ET+GL PE LL E
Sbjct: 61 SLDEF---FKKNKDGRFFYATTKAANSYH-ELDYQADDYFLFGKETAGL-PETLLKDNLE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IRIPM ++ +R LNL+ SV I +YEA RQ N+ L
Sbjct: 116 Y----CIRIPMKDS-LRSLNLANSVSIIIYEALRQNNFNNL 151
>gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
Length = 167
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60
Query: 138 STWAEFRDYFR----QQEGE--KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F D + Q G RL A T +GT HS +SY+ DYL+FG ET GLP
Sbjct: 61 HDYQAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPATV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L ++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 LDALPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 160
>gi|340001203|ref|YP_004732087.1| RNA-methyltransferase [Salmonella bongori NCTC 12419]
gi|339514565|emb|CCC32331.1| putative RNA-methyltransferase [Salmonella bongori NCTC 12419]
Length = 157
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FIAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLEY 150
>gi|386361163|ref|YP_006059408.1| rRNA methylase SpoU family [Thermus thermophilus JL-18]
gi|383510190|gb|AFH39622.1| putative rRNA methylase SpoU family [Thermus thermophilus JL-18]
Length = 149
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N G +ART AA LHL+ PLGF + KLKRAGLDYWP+V +++H
Sbjct: 1 MLHLVLYQPEIPQNAGNVARTAAALGWPLHLIRPLGFLLSSPKLKRAGLDYWPHVDLRLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++A F + + R+ AF+ RG ++ E +R+GDY +FG E+ GLP E L
Sbjct: 61 DSFAAFLEALPRG---ARVFAFSARGEASLYEARFREGDYFLFGPESRGLPEEVLARFP- 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
T++IPM VR LNL+V+VG+A YEA RQL
Sbjct: 117 ------TLKIPMPGP-VRSLNLAVAVGVAAYEAYRQLR 147
>gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM10+]
gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM10+]
Length = 194
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 33 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 92
Query: 138 STWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F D + + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 93 HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 152
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 153 AQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 187
>gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii
ATCC BAA-894]
gi|429120588|ref|ZP_19181257.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter sakazakii
680]
gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894]
gi|426324858|emb|CCK11994.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter sakazakii
680]
Length = 157
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 ADYAA----FLEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDVLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 QE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|429764977|ref|ZP_19297284.1| RNA methyltransferase, TrmH family, group 2 [Clostridium celatum
DSM 1785]
gi|429187247|gb|EKY28164.1| RNA methyltransferase, TrmH family, group 2 [Clostridium celatum
DSM 1785]
Length = 156
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +DD ++R+GLDYW + ++VH
Sbjct: 6 LNIVLYQPEIPQNTGNIARTCVLTDSTLHLIKPLGFSIDDKAVRRSGLDYWKDLKLEVHE 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ +F + G++R+ T G + +S+ ++ GD+++FG E+SG+P E
Sbjct: 66 SYEDFMAKY----GDRRIFLSTTHGGNIYSDEKFQDGDFIMFGRESSGVPEEV-----HN 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G IR+PMV+T R LNLS +V I YEA +Q+ + +K
Sbjct: 117 AHSG--IRVPMVQTSTRSLNLSNTVAIIAYEALKQIGFPNMK 156
>gi|365128051|ref|ZP_09340399.1| RNA methyltransferase, TrmH family, group 2 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363623630|gb|EHL74741.1| RNA methyltransferase, TrmH family, group 2 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 165
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKV 136
K L +VLV PQIP NTG I+RTCAA+ LHLVGP+GF VDD KLKRAGLDYW + I
Sbjct: 2 KPLNIVLVEPQIPQNTGNISRTCAATGARLHLVGPMGFTVDDKKLKRAGLDYWHLLDITY 61
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ D+F + EG FT + +++++Y G YL+FG E +GL PEALL
Sbjct: 62 YEG---LTDFFARNEGP--FYYFTTKAPQRYTDVAYPDGAYLVFGREDAGL-PEALLVEN 115
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM+ R LNLS +V + VYEA RQ ++ L
Sbjct: 116 QE----ACVRLPMIPD-ARSLNLSNTVAVGVYEALRQRDFAGL 153
>gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a]
Length = 168
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV PQIP NTG IARTCA + LH+V P+GFQ+DD KLK AGLDYW Y+ I +
Sbjct: 3 LNIVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F + R ++GE FT +G +T+ + Y+ Y++FG E GLP E L
Sbjct: 63 GLDDF--FERNKDGE--FFYFTTKGRNTYCDAEYKDKTYIVFGREDKGLPEELLFHNKQH 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+RIPM +R LNLS SV I YE RQ + +L+
Sbjct: 119 -----CVRIPMGSN-MRSLNLSNSVAIGAYEVLRQWGFPELQN 155
>gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
Length = 167
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60
Query: 138 STWAEFRDYFR----QQEGE--KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F D + Q G RL A T +GT HS +SY+ DYL+FG ET GLP
Sbjct: 61 HDYQAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPARV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L ++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 LDVLPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 160
>gi|432950285|ref|ZP_20144574.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE196]
gi|433045156|ref|ZP_20232630.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE117]
gi|431452591|gb|ELH33003.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE196]
gi|431552553|gb|ELI26506.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE117]
Length = 157
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|82779099|ref|YP_405448.1| tRNA/rRNA methyltransferase YibK [Shigella dysenteriae Sd197]
gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185]
gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
gi|417631049|ref|ZP_12281283.1| spoU rRNA Methylase family protein [Escherichia coli STEC_MHI813]
gi|422836131|ref|ZP_16884180.1| hypothetical protein ESOG_03781 [Escherichia coli E101]
gi|432451866|ref|ZP_19694120.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE193]
gi|433035525|ref|ZP_20223214.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE112]
gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185]
gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
gi|345370328|gb|EGX02306.1| spoU rRNA Methylase family protein [Escherichia coli STEC_MHI813]
gi|371609692|gb|EHN98226.1| hypothetical protein ESOG_03781 [Escherichia coli E101]
gi|430977016|gb|ELC93867.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE193]
gi|431546488|gb|ELI20884.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE112]
Length = 157
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|397906298|ref|ZP_10507111.1| tRNA (cytosine34-2'-O-)-methyltransferase [Caloramator australicus
RC3]
gi|397160647|emb|CCJ34448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Caloramator australicus
RC3]
Length = 155
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LHL+ PLGF + D LKRAG+DYW + + +
Sbjct: 3 LNIVLYQPEIPQNTGNIGRTCVLTNSSLHLIKPLGFLLTDKYLKRAGMDYWKDLDVHYYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ EF + + +G KR+ T RG ++++ Y GD++IFG E+SG+P D +
Sbjct: 63 SFEEF---YEKHKG-KRMFLSTTRGKKLYTDVQYNVGDFIIFGRESSGVP-----DYIRD 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPMVET R LNLS S I ++EA RQ+ + +K
Sbjct: 114 LLKENLIRIPMVETTDRSLNLSNSAAIIMFEALRQIGFPNMK 155
>gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
1012]
gi|417675123|ref|ZP_12324548.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74]
gi|420345781|ref|ZP_14847210.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
boydii 965-58]
gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
1012]
gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74]
gi|391275833|gb|EIQ34616.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
boydii 965-58]
Length = 160
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC
35316]
gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter
cancerogenus ATCC 35316]
Length = 159
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F D E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 PDYAAFLD----AEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum DSM 2360]
gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum JW20]
gi|385779431|ref|YP_005688596.1| TrmH family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419721875|ref|ZP_14249029.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum AD2]
gi|419725573|ref|ZP_14252613.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum YS]
gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum ATCC 27405]
gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum DSM 2360]
gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum JW20]
gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum DSM 1313]
gi|380770959|gb|EIC04839.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum YS]
gi|380782134|gb|EIC11778.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
thermocellum AD2]
Length = 164
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 98/161 (60%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVLV P+IP NTG IARTCAA LHLV PLGF V+D LKRAGLDYW V IK +
Sbjct: 3 INVVLVEPEIPQNTGNIARTCAAVGANLHLVKPLGFSVEDRYLKRAGLDYWDKVNIKYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+++E RD ++ E T + ++++ Y +++FG ET+GLP E L++
Sbjct: 63 SFSELRDKYK----EHIFYYSTTKAQKLYTDVKYPDDCFIVFGKETAGLPEELLVENKE- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IRIPM + +R LNLS SV I VYEA RQ N+ L
Sbjct: 118 ----WCIRIPMRDD-IRSLNLSNSVAIIVYEALRQNNFAGL 153
>gi|417691987|ref|ZP_12341192.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82]
gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82]
Length = 160
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9]
gi|418040495|ref|ZP_12678738.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli W26]
gi|432482928|ref|ZP_19724877.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE210]
gi|432829233|ref|ZP_20062848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE135]
gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9]
gi|383476646|gb|EID68582.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli W26]
gi|431003946|gb|ELD19179.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE210]
gi|431382176|gb|ELG66516.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE135]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFR-AFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
JA-3-3Ab]
Length = 151
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 12/154 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVLV+P+IP NTG IARTCAA+ LHLV PLGF++ D L+RAGLDYW +V + + +
Sbjct: 4 HVVLVAPEIPANTGNIARTCAATRTPLHLVDPLGFRLSDRYLRRAGLDYWEHVQLHRYPS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W+ Q E R F+ RG + ++E++Y+ GD+L+FGSE+ GL P L ET
Sbjct: 64 WSA----LVQAHPEARFWCFSVRGKALYTEVAYQPGDWLVFGSESRGLDPMFL-----ET 114
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ ++RIP+ VR LNLS +V IA++EA RQ
Sbjct: 115 Y--PSVRIPLSGP-VRSLNLSNAVAIALFEALRQ 145
>gi|157163090|ref|YP_001460408.1| tRNA/rRNA methyltransferase YibK [Escherichia coli HS]
gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC
8739]
gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
53638]
gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
101-1]
gi|251786857|ref|YP_003001161.1| rRNA methylase [Escherichia coli BL21(DE3)]
gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str.
REL606]
gi|254290286|ref|YP_003056034.1| rRNA methylase [Escherichia coli BL21(DE3)]
gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088]
gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
119-7]
gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
187-1]
gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA271]
gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
gi|386706876|ref|YP_006170723.1| putative rRNA methylase (SpoU class) [Escherichia coli P12b]
gi|416342113|ref|ZP_11676479.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
EC4100B]
gi|417222019|ref|ZP_12025459.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
96.154]
gi|417267336|ref|ZP_12054697.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
3.3884]
gi|418945869|ref|ZP_13498556.1| putative rRNA methylase [Escherichia coli O157:H43 str. T22]
gi|419280699|ref|ZP_13822936.1| spoU rRNA Methylase family protein [Escherichia coli DEC10E]
gi|419347385|ref|ZP_13888753.1| spoU rRNA Methylase family protein [Escherichia coli DEC13A]
gi|419351846|ref|ZP_13893174.1| spoU rRNA Methylase family protein [Escherichia coli DEC13B]
gi|419357315|ref|ZP_13898561.1| spoU rRNA Methylase family protein [Escherichia coli DEC13C]
gi|419362291|ref|ZP_13903497.1| spoU rRNA Methylase family protein [Escherichia coli DEC13D]
gi|419367334|ref|ZP_13908483.1| spoU rRNA Methylase family protein [Escherichia coli DEC13E]
gi|419377703|ref|ZP_13918719.1| spoU rRNA Methylase family protein [Escherichia coli DEC14B]
gi|419383041|ref|ZP_13923983.1| spoU rRNA Methylase family protein [Escherichia coli DEC14C]
gi|419388337|ref|ZP_13929204.1| spoU rRNA Methylase family protein [Escherichia coli DEC14D]
gi|419394156|ref|ZP_13934951.1| spoU rRNA Methylase family protein [Escherichia coli DEC15A]
gi|419398888|ref|ZP_13939650.1| spoU rRNA Methylase family protein [Escherichia coli DEC15B]
gi|419404162|ref|ZP_13944879.1| spoU rRNA Methylase family protein [Escherichia coli DEC15C]
gi|419409322|ref|ZP_13950005.1| spoU rRNA Methylase family protein [Escherichia coli DEC15D]
gi|419414874|ref|ZP_13955507.1| spoU rRNA Methylase family protein [Escherichia coli DEC15E]
gi|422768603|ref|ZP_16822327.1| RNA methyltransferase [Escherichia coli E1520]
gi|422773259|ref|ZP_16826944.1| RNA methyltransferase [Escherichia coli E482]
gi|422788454|ref|ZP_16841190.1| RNA methyltransferase [Escherichia coli H489]
gi|422792200|ref|ZP_16844901.1| RNA methyltransferase [Escherichia coli TA007]
gi|423707900|ref|ZP_17682280.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli B799]
gi|425307413|ref|ZP_18697083.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli N1]
gi|432367096|ref|ZP_19610210.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE10]
gi|432378786|ref|ZP_19621767.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE12]
gi|432577872|ref|ZP_19814318.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE56]
gi|432811341|ref|ZP_20045197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE101]
gi|432836557|ref|ZP_20070087.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE136]
gi|432877976|ref|ZP_20095425.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE154]
gi|433200371|ref|ZP_20384254.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE94]
gi|442600228|ref|ZP_21017920.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS]
gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC
8739]
gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
53638]
gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
101-1]
gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606]
gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088]
gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
187-1]
gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
119-7]
gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
EC4100B]
gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520]
gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482]
gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489]
gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007]
gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA271]
gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
gi|375318814|gb|EHS65173.1| putative rRNA methylase [Escherichia coli O157:H43 str. T22]
gi|378123801|gb|EHW85218.1| spoU rRNA Methylase family protein [Escherichia coli DEC10E]
gi|378182918|gb|EHX43566.1| spoU rRNA Methylase family protein [Escherichia coli DEC13A]
gi|378196023|gb|EHX56513.1| spoU rRNA Methylase family protein [Escherichia coli DEC13C]
gi|378196244|gb|EHX56732.1| spoU rRNA Methylase family protein [Escherichia coli DEC13B]
gi|378198863|gb|EHX59332.1| spoU rRNA Methylase family protein [Escherichia coli DEC13D]
gi|378209991|gb|EHX70358.1| spoU rRNA Methylase family protein [Escherichia coli DEC13E]
gi|378215242|gb|EHX75541.1| spoU rRNA Methylase family protein [Escherichia coli DEC14B]
gi|378224982|gb|EHX85183.1| spoU rRNA Methylase family protein [Escherichia coli DEC14C]
gi|378228335|gb|EHX88493.1| spoU rRNA Methylase family protein [Escherichia coli DEC14D]
gi|378233257|gb|EHX93347.1| spoU rRNA Methylase family protein [Escherichia coli DEC15A]
gi|378240790|gb|EHY00760.1| spoU rRNA Methylase family protein [Escherichia coli DEC15B]
gi|378242979|gb|EHY02926.1| spoU rRNA Methylase family protein [Escherichia coli DEC15C]
gi|378251957|gb|EHY11852.1| spoU rRNA Methylase family protein [Escherichia coli DEC15D]
gi|378256429|gb|EHY16280.1| spoU rRNA Methylase family protein [Escherichia coli DEC15E]
gi|383105044|gb|AFG42553.1| putative rRNA methylase (SpoU class) [Escherichia coli P12b]
gi|385708813|gb|EIG45815.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli B799]
gi|386201821|gb|EII00812.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
96.154]
gi|386229694|gb|EII57049.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
3.3884]
gi|408225545|gb|EKI49225.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli N1]
gi|430890911|gb|ELC13459.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE10]
gi|430895736|gb|ELC17989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE12]
gi|431111839|gb|ELE15729.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE56]
gi|431359797|gb|ELG46422.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE101]
gi|431381953|gb|ELG66302.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE136]
gi|431417216|gb|ELG99679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE154]
gi|431717385|gb|ELJ81483.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE94]
gi|441650942|emb|CCQ03388.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFR-AFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|378961990|ref|YP_005219476.1| putative tRNA/rRNA methyltransferase yibK [Salmonella enterica
subsp. enterica serovar Typhi str. P-stx-12]
gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374355862|gb|AEZ47623.1| putative tRNA/rRNA methyltransferase yibK [Salmonella enterica
subsp. enterica serovar Typhi str. P-stx-12]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 156
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV P+IP NTG IARTC + LHLV PLGF +D+ +KRAGLDYWP + + V+
Sbjct: 3 LNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
F Q +G+K LA TK H E+ Y Y++FG ET+GLP + E
Sbjct: 63 NLERF---LEQNKGKKFYLATTKAKKYYH-EVKYEDNSYILFGKETAGLPKWLI-----E 113
Query: 199 TFGGGTIRIPMVETY-VRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM E R LNLS SV I +YEA RQL + +K
Sbjct: 114 KYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 152
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 101/154 (65%), Gaps = 12/154 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVLV+P+IP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYW +V + + +
Sbjct: 4 HVVLVAPEIPANTGNIARTCAATDTPLHLVDPLGFRLSDRYLKRAGLDYWQHVQLYRYPS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W+ Q E R F+ RG + ++E++Y+ GD+L+FGSE+ GL P L ET
Sbjct: 64 WSA----LVQAHPEARFWCFSVRGKALYTEVTYQPGDWLVFGSESRGLDPLFL-----ET 114
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ ++RIP+ VR LNLS +V IA++EA RQ
Sbjct: 115 Y--PSVRIPL-RGPVRSLNLSNAVAIALFEALRQ 145
>gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
700633]
gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
700633]
Length = 169
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHLVG LGF DD LKRAGLDYW V I H +
Sbjct: 5 HIVLFEPQIPANTGNIARTCAATNSPLHLVGQLGFSTDDKHLKRAGLDYWNDVDITYHDS 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F +Y G + + TK T+ E+ K + + IFG ET+GLP E + +
Sbjct: 65 LEAFMEYL----GNRPIYLITKFANHTYDEVDLAKDEEQFFIFGKETTGLPEEFMREHEE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM +T+VR LNLS + I VYEA RQ ++ L+
Sbjct: 121 -----SCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQQFKGLE 158
>gi|375086946|ref|ZP_09733338.1| RNA methyltransferase, TrmH family, group 2 [Megamonas funiformis
YIT 11815]
gi|374563661|gb|EHR34972.1| RNA methyltransferase, TrmH family, group 2 [Megamonas funiformis
YIT 11815]
Length = 160
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IP NTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLIEPEIPANTGNIARLCANTGIELHLVKPLGFSTDDKYLKRAGLDYWHLVKVHYHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
F + + +G K A TK HS+++Y D L+FG ET+G+P L + +
Sbjct: 61 N---FDEVLEKYKGHKFHYATTK-ANHVHSDVTYGMDDMLVFGKETAGIPESILKEHWDD 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM+ + R LNLS SV + YEA RQL+Y LK
Sbjct: 117 -----CIRIPMI-SESRSLNLSNSVAVIAYEAMRQLDYANLK 152
>gi|389839095|ref|YP_006341179.1| tRNA/rRNA methyltransferase [Cronobacter sakazakii ES15]
gi|387849571|gb|AFJ97668.1| putative tRNA/rRNA methyltransferase [Cronobacter sakazakii ES15]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 ADYAA----FLEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 154
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 101/162 (62%), Gaps = 12/162 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTC + C LHL+ PLGF +++ ++KRAGLDYW + +++H +
Sbjct: 4 NIVLYQPEIPQNTGNIARTCVLTDCKLHLIKPLGFDINEKQVKRAGLDYWSELNLEIHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTH-SEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ +F + + G +R+ T T TH EI ++ GD+++FG ET G+P D +
Sbjct: 64 YEDFLEKY----GNERIFLATTHETGTHYDEIEFKSGDFIMFGRETCGVPE----DVHNR 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G +R+PM+++ R LNLS +V I YEA RQ+ + +K
Sbjct: 116 HKG---LRVPMIKSSTRSLNLSNTVAIVAYEALRQIGFPNMK 154
>gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194442768|ref|YP_002042944.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194734332|ref|YP_002116632.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|374978334|ref|ZP_09719677.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375003553|ref|ZP_09727892.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
gi|378447064|ref|YP_005234696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452574|ref|YP_005239934.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378701582|ref|YP_005183540.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378986292|ref|YP_005249448.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|378990997|ref|YP_005254161.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|379702956|ref|YP_005244684.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|383498329|ref|YP_005399018.1| RNA-methyltransferase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|409247379|ref|YP_006888078.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416427380|ref|ZP_11693515.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416432592|ref|ZP_11696271.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416437548|ref|ZP_11698898.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416443399|ref|ZP_11703012.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416450298|ref|ZP_11707427.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416460293|ref|ZP_11714676.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416463525|ref|ZP_11716009.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416482266|ref|ZP_11723728.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416490018|ref|ZP_11726596.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|416501914|ref|ZP_11732462.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416508248|ref|ZP_11735952.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416517151|ref|ZP_11739356.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416525338|ref|ZP_11741551.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|416538899|ref|ZP_11749663.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416541365|ref|ZP_11750952.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416552829|ref|ZP_11757390.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|416562259|ref|ZP_11762016.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416571057|ref|ZP_11766456.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|416579942|ref|ZP_11771516.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416586363|ref|ZP_11775447.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416589535|ref|ZP_11777120.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416597580|ref|ZP_11782161.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416607022|ref|ZP_11788236.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416611552|ref|ZP_11790926.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416624736|ref|ZP_11798262.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|416631246|ref|ZP_11801113.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416645068|ref|ZP_11807234.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416648128|ref|ZP_11808841.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416661351|ref|ZP_11815525.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|416668044|ref|ZP_11818670.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416681193|ref|ZP_11823603.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416695656|ref|ZP_11827733.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|416709012|ref|ZP_11833816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416712907|ref|ZP_11836569.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416721082|ref|ZP_11842613.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416722810|ref|ZP_11843636.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416729544|ref|ZP_11848121.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416741408|ref|ZP_11855102.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416747947|ref|ZP_11858402.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416755305|ref|ZP_11861966.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|416764969|ref|ZP_11868392.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416771792|ref|ZP_11872971.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417329610|ref|ZP_12114413.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417337307|ref|ZP_12119493.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|417344621|ref|ZP_12124922.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417361467|ref|ZP_12135349.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|417368472|ref|ZP_12140014.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417376662|ref|ZP_12145784.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|417394222|ref|ZP_12156469.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417432991|ref|ZP_12161430.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417470735|ref|ZP_12166854.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417514332|ref|ZP_12178158.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|417521394|ref|ZP_12183100.1| tRNA (cytosine34-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Uganda str. R8-3404]
gi|417542515|ref|ZP_12193933.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|418484977|ref|ZP_13053964.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418491120|ref|ZP_13057647.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418494676|ref|ZP_13061127.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418499817|ref|ZP_13066218.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418505183|ref|ZP_13071532.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418510415|ref|ZP_13076696.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418514617|ref|ZP_13080815.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418525111|ref|ZP_13091094.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418761386|ref|ZP_13317530.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418765371|ref|ZP_13321456.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418770276|ref|ZP_13326299.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418777762|ref|ZP_13333688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418781831|ref|ZP_13337706.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418784935|ref|ZP_13340769.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418790476|ref|ZP_13346250.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418793987|ref|ZP_13349711.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418799748|ref|ZP_13355413.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|418803989|ref|ZP_13359600.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|418806887|ref|ZP_13362457.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418811049|ref|ZP_13366586.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418814705|ref|ZP_13370218.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418822508|ref|ZP_13377920.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418824303|ref|ZP_13379670.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|418831363|ref|ZP_13386320.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418837717|ref|ZP_13392588.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418839398|ref|ZP_13394233.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418843252|ref|ZP_13398050.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418849982|ref|ZP_13404703.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418855622|ref|ZP_13410276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|418856997|ref|ZP_13411630.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|418861617|ref|ZP_13416172.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418867909|ref|ZP_13422361.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|419789812|ref|ZP_14315489.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419794605|ref|ZP_14320214.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421885091|ref|ZP_16316293.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|422027937|ref|ZP_16374261.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422032980|ref|ZP_16379070.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427555590|ref|ZP_18929567.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427573122|ref|ZP_18934171.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427594497|ref|ZP_18939079.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427619052|ref|ZP_18943994.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427642511|ref|ZP_18948851.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427657966|ref|ZP_18953593.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427663196|ref|ZP_18958472.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427679210|ref|ZP_18963376.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427801198|ref|ZP_18968814.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|437834784|ref|ZP_20845091.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|452122508|ref|YP_007472756.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301160231|emb|CBW19753.1| hypothetical RNA-methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|353074468|gb|EHB40229.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
gi|353564463|gb|EHC30529.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353565022|gb|EHC30930.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353583930|gb|EHC44174.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353586572|gb|EHC46106.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353592345|gb|EHC50385.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353606259|gb|EHC60532.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353614058|gb|EHC66003.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353624533|gb|EHC73547.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353634133|gb|EHC80780.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353641562|gb|EHC86263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Uganda str. R8-3404]
gi|353658489|gb|EHC98660.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|357953936|gb|EHJ80307.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|363552437|gb|EHL36726.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363558999|gb|EHL43177.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|363561261|gb|EHL45389.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363561396|gb|EHL45516.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363564001|gb|EHL48066.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|363573341|gb|EHL57227.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|363574554|gb|EHL58421.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|366056620|gb|EHN20932.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366061437|gb|EHN25683.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366063364|gb|EHN27583.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366068804|gb|EHN32938.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366070005|gb|EHN34122.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366076921|gb|EHN40954.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366078345|gb|EHN42347.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366829758|gb|EHN56633.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372207058|gb|EHP20559.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|379985288|emb|CCF88566.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|380465150|gb|AFD60553.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|392614179|gb|EIW96628.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392614639|gb|EIW97084.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392737645|gb|EIZ94799.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392740274|gb|EIZ97395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392740387|gb|EIZ97507.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392743219|gb|EJA00293.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392745596|gb|EJA02620.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392753110|gb|EJA10048.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392757842|gb|EJA14723.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392762900|gb|EJA19711.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392762930|gb|EJA19740.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|392771821|gb|EJA28533.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|392780735|gb|EJA37387.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392782045|gb|EJA38683.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392787418|gb|EJA43959.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392794078|gb|EJA50505.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392798164|gb|EJA54448.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392799835|gb|EJA56083.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392812579|gb|EJA68562.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392816944|gb|EJA72862.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392819659|gb|EJA75520.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392821167|gb|EJA76997.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|392823728|gb|EJA79523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|392835534|gb|EJA91128.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392838495|gb|EJA94058.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392838972|gb|EJA94520.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|414013172|gb|EKS97069.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414014027|gb|EKS97882.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414014594|gb|EKS98435.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414028013|gb|EKT11215.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414029289|gb|EKT12450.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414031582|gb|EKT14636.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414042582|gb|EKT25118.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414043237|gb|EKT25750.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414047700|gb|EKT29969.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414056072|gb|EKT37917.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414062639|gb|EKT43924.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|435300954|gb|ELO77011.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|451911512|gb|AGF83318.1| rRNA methylase [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
gi|167656330|gb|EDS00460.1| putative RNA methyltransferase, TrmH family, group 2 [Eubacterium
siraeum DSM 15702]
Length = 168
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL+ PQIP NTG IARTCA + LH+V P+GFQ+DD KLK AGLDYW Y+ I +
Sbjct: 3 LNIVLIEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F + R ++GE FT +G +T+ + Y+ Y++FG E GLP E L
Sbjct: 63 GLDDF--FERNKDGE--FFYFTTKGRNTYCDAEYKDKTYIVFGREDKGLPEELLFHNKQH 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+RIPM +R LNLS SV I YE RQ + +L+
Sbjct: 119 -----CVRIPMGSN-MRSLNLSNSVAIGAYEVLRQWGFPELQN 155
>gi|366158068|ref|ZP_09457930.1| putative rRNA methylase [Escherichia sp. TW09308]
gi|432374422|ref|ZP_19617453.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE11]
gi|430893844|gb|ELC16168.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE11]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|423110916|ref|ZP_17098611.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5243]
gi|423116918|ref|ZP_17104609.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5245]
gi|376376787|gb|EHS89562.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5245]
gi|376377396|gb|EHS90165.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5243]
Length = 157
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + Q RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 RDYAAFVESAKPQ----RLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPGSILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|62182189|ref|YP_218606.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194451947|ref|YP_002047725.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|198243676|ref|YP_002217657.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375116531|ref|ZP_09761701.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|375121174|ref|ZP_09766341.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|375125591|ref|ZP_09770755.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|378957449|ref|YP_005214936.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|386593368|ref|YP_006089768.1| tRNA (cytosine34-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|419728852|ref|ZP_14255815.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419735103|ref|ZP_14261987.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419740844|ref|ZP_14267562.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743552|ref|ZP_14270217.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419746705|ref|ZP_14273281.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421360105|ref|ZP_15810391.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421363687|ref|ZP_15813927.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421368651|ref|ZP_15818836.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421370720|ref|ZP_15820883.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421378378|ref|ZP_15828466.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421382985|ref|ZP_15833030.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387213|ref|ZP_15837218.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421391917|ref|ZP_15841882.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421396387|ref|ZP_15846315.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400735|ref|ZP_15850620.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421405439|ref|ZP_15855273.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421406992|ref|ZP_15856802.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421414489|ref|ZP_15864233.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421418851|ref|ZP_15868551.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421421129|ref|ZP_15870804.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427650|ref|ZP_15877269.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421432500|ref|ZP_15882072.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437663|ref|ZP_15887179.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441663|ref|ZP_15891128.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421443540|ref|ZP_15892981.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421448522|ref|ZP_15897915.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421569656|ref|ZP_16015357.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421573839|ref|ZP_16019471.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421579176|ref|ZP_16024746.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582745|ref|ZP_16028277.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|436612034|ref|ZP_20513975.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436803427|ref|ZP_20525857.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436808077|ref|ZP_20527714.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436812502|ref|ZP_20530933.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436845662|ref|ZP_20538900.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436853610|ref|ZP_20543438.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436855171|ref|ZP_20544480.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866485|ref|ZP_20552002.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436869347|ref|ZP_20553563.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436882547|ref|ZP_20561301.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889719|ref|ZP_20565433.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436894863|ref|ZP_20568067.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436904823|ref|ZP_20574784.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913994|ref|ZP_20579196.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436921601|ref|ZP_20583902.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436928668|ref|ZP_20587905.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436934655|ref|ZP_20590615.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436941632|ref|ZP_20595138.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436952994|ref|ZP_20601459.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436965541|ref|ZP_20606617.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436967687|ref|ZP_20607441.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436978251|ref|ZP_20612393.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436995909|ref|ZP_20619609.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437003081|ref|ZP_20621507.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437013894|ref|ZP_20625255.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437032643|ref|ZP_20632023.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437043950|ref|ZP_20637024.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437051810|ref|ZP_20641551.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437057269|ref|ZP_20644544.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437063912|ref|ZP_20648227.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437078133|ref|ZP_20655979.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437082616|ref|ZP_20658458.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437095966|ref|ZP_20664764.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437114848|ref|ZP_20669232.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437119847|ref|ZP_20671094.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129868|ref|ZP_20676324.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437136360|ref|ZP_20679825.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437148161|ref|ZP_20687329.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437150758|ref|ZP_20688817.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437161386|ref|ZP_20695422.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437169780|ref|ZP_20699993.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437174733|ref|ZP_20702320.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437184010|ref|ZP_20708008.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437189261|ref|ZP_20710611.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437262865|ref|ZP_20719195.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437271399|ref|ZP_20723663.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274066|ref|ZP_20725097.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437291522|ref|ZP_20731586.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437304221|ref|ZP_20733934.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437331834|ref|ZP_20742023.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437344342|ref|ZP_20746250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437351994|ref|ZP_20747637.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437430608|ref|ZP_20755811.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437449650|ref|ZP_20759389.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437464199|ref|ZP_20763562.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437479499|ref|ZP_20768012.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437491140|ref|ZP_20771366.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437506678|ref|ZP_20775867.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437530489|ref|ZP_20780590.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437560233|ref|ZP_20786001.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437572874|ref|ZP_20789298.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437585876|ref|ZP_20793067.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437605932|ref|ZP_20799555.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437620132|ref|ZP_20803918.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437646696|ref|ZP_20809041.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437661295|ref|ZP_20812905.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437677672|ref|ZP_20817338.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697493|ref|ZP_20822982.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437709226|ref|ZP_20826084.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437724246|ref|ZP_20829606.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437746242|ref|ZP_20833544.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437814080|ref|ZP_20842202.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437878572|ref|ZP_20848765.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438043771|ref|ZP_20855875.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438091767|ref|ZP_20861172.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438097209|ref|ZP_20862225.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438115318|ref|ZP_20870441.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438120740|ref|ZP_20871989.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445133211|ref|ZP_21382507.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445143096|ref|ZP_21386377.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445149139|ref|ZP_21388964.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445175084|ref|ZP_21397215.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445186262|ref|ZP_21399174.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445233045|ref|ZP_21406263.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445239494|ref|ZP_21407373.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445333541|ref|ZP_21414823.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445345861|ref|ZP_21418463.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445356476|ref|ZP_21421761.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|357208060|gb|AET56106.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|381293500|gb|EIC34653.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381295924|gb|EIC37033.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381298545|gb|EIC39623.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381312037|gb|EIC52847.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381320988|gb|EIC61516.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383800409|gb|AFH47491.1| tRNA (cytosine34-2'-O-)-methyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|395982794|gb|EJH91991.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395983739|gb|EJH92930.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395985717|gb|EJH94883.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395996887|gb|EJI05931.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|395997003|gb|EJI06046.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396006004|gb|EJI14975.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396009613|gb|EJI18537.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396009991|gb|EJI18905.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396010353|gb|EJI19266.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396023039|gb|EJI31841.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396024124|gb|EJI32914.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396032467|gb|EJI41190.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396036531|gb|EJI45191.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396037231|gb|EJI45881.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396043375|gb|EJI51979.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396049801|gb|EJI58339.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396050226|gb|EJI58758.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396050907|gb|EJI59426.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396063260|gb|EJI71659.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396070222|gb|EJI78551.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396073176|gb|EJI81482.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402523147|gb|EJW30466.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402526656|gb|EJW33926.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402527033|gb|EJW34299.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402532641|gb|EJW39830.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|434943451|gb|ELL49569.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434956571|gb|ELL50300.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434967827|gb|ELL60610.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434969331|gb|ELL62043.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434976073|gb|ELL68330.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434978276|gb|ELL70316.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434983720|gb|ELL75501.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993115|gb|ELL84553.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434994112|gb|ELL85485.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435003023|gb|ELL94061.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435003246|gb|ELL94266.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435007304|gb|ELL98158.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435015507|gb|ELM06035.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435017574|gb|ELM08064.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435023794|gb|ELM14034.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435025269|gb|ELM15438.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435034453|gb|ELM24336.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435040697|gb|ELM30452.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435044853|gb|ELM34521.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435046983|gb|ELM36586.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435048657|gb|ELM38215.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435061007|gb|ELM50244.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435062744|gb|ELM51925.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435070171|gb|ELM59167.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435073306|gb|ELM62184.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435078691|gb|ELM67412.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435082052|gb|ELM70678.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435086187|gb|ELM74731.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435091672|gb|ELM80053.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435095759|gb|ELM84044.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435101579|gb|ELM89724.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435102135|gb|ELM90250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435109299|gb|ELM97253.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435109368|gb|ELM97321.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435115729|gb|ELN03490.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435126223|gb|ELN13627.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435128769|gb|ELN16096.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435133059|gb|ELN20240.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435136181|gb|ELN23273.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435145275|gb|ELN32094.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435145507|gb|ELN32319.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435148167|gb|ELN34903.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435157401|gb|ELN43853.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435161440|gb|ELN47668.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435161881|gb|ELN48094.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435169873|gb|ELN55631.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435176826|gb|ELN62192.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435181716|gb|ELN66769.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435188347|gb|ELN73064.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435188630|gb|ELN73319.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435190778|gb|ELN75353.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435199016|gb|ELN83136.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435208997|gb|ELN92382.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435213082|gb|ELN96012.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435217687|gb|ELO00103.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435219804|gb|ELO02135.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435229635|gb|ELO10994.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435233510|gb|ELO14509.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435234313|gb|ELO15178.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435238737|gb|ELO19362.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435244063|gb|ELO24295.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435247238|gb|ELO27209.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435256556|gb|ELO35860.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435257823|gb|ELO37101.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435260438|gb|ELO39633.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435268738|gb|ELO47318.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435271430|gb|ELO49892.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435274912|gb|ELO53006.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435276085|gb|ELO54110.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435290180|gb|ELO67122.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435293375|gb|ELO70079.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435296008|gb|ELO72431.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435312374|gb|ELO86307.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435315708|gb|ELO88933.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435321076|gb|ELO93529.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|435327013|gb|ELO98789.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435328237|gb|ELO99815.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435333963|gb|ELP04692.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|444848082|gb|ELX73215.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444848823|gb|ELX73944.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444858434|gb|ELX83420.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444858635|gb|ELX83614.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444861568|gb|ELX86442.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444869688|gb|ELX94259.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444875821|gb|ELY00015.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444878795|gb|ELY02909.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444886954|gb|ELY10690.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444891316|gb|ELY14577.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 157
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPK 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 156
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase SpoU [Truepera radiovictrix DSM 17093]
gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
17093]
Length = 157
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V L P+I GN G IARTCA LHL+ P GF++ D ++RAG+DYW V + H
Sbjct: 1 MFHVALFEPEIAGNVGNIARTCAVVGAPLHLIRPYGFRLSDAAVRRAGMDYWEAVQLTQH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+++A+F +F + R+ AFT + T +SE+ YR GD L+FG E+ GL PEA+ S
Sbjct: 61 ASFAQFEAHFARAFEAGRVFAFTTKATVGYSEVRYRPGDVLLFGPESRGL-PEAVRALAS 119
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIPM + R LNL+VSVG+ +YEA RQL +
Sbjct: 120 ------PVRIPM-QGGARSLNLAVSVGVGLYEAWRQLGF 151
>gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 155
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 96/165 (58%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I H
Sbjct: 1 MHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQFVKIVYHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDC 195
+ D+F EG + TK GT HS Y K Y IFG ET+GL P+ +++
Sbjct: 61 S---LDDFFNSSEGGE-YFYLTKYGTKPHSTFDYSNVGKDYYFIFGKETTGL-PKNIIEI 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +R+PM + VR LNLS + I VYEA RQ +Y LK
Sbjct: 116 NKER----ALRVPMNDK-VRSLNLSNTAAILVYEALRQQDYLHLK 155
>gi|342216964|ref|ZP_08709611.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341587854|gb|EGS31254.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 153
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L ++L P+IP NTG IARTCA + LHLV PLGF VDD+ LKRAGLDYWP V I
Sbjct: 1 MLNIILYQPEIPYNTGAIARTCALTKTRLHLVKPLGFSVDDSHLKRAGLDYWPLVDI--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S + F D EGE + + G +++++Y+ GD ++FG ETSGLP E +
Sbjct: 58 SYYDSFEDVVDLMEGE--IYFASTHGHKRYTDVTYKDGDAIVFGRETSGLPKEIM----- 110
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ + IR+PM R LNL+ S I ++EA RQ ++ L
Sbjct: 111 DKYQDQLIRVPMRTELRRSLNLANSANIVLFEALRQNDFFDL 152
>gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC
BAA-895]
gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895]
Length = 157
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|423105433|ref|ZP_17093135.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5242]
gi|376380750|gb|EHS93493.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5242]
Length = 157
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L +
Sbjct: 61 GDYAAFIESAKPQ----RLFALTTKGTPAHSAVSYQDGDFLLFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3]
Length = 168
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV PQIP NTG IARTCA + LH+V P+GFQ+DD KLK AGLDYW Y+ I
Sbjct: 3 LNIVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDI---- 58
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ + D F ++ + FT +G +T+ + Y+ Y++FG E GLP E L
Sbjct: 59 TYYDGLDDFFERNKDSEFFYFTTKGRNTYCDAEYKDKTYIVFGREDKGLPEELLFHNKQH 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+RIPM +R LNLS SV I YE RQ + +L+
Sbjct: 119 -----CVRIPMGSN-MRSLNLSNSVAIGAYEVLRQWGFPELQN 155
>gi|387609342|ref|YP_006098198.1| putative RNA-methyltransferase [Escherichia coli 042]
gi|432720756|ref|ZP_19955717.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE9]
gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042]
gi|431259385|gb|ELF51750.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE9]
Length = 157
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLVFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|398303935|ref|ZP_10507521.1| rRNA methylase [Bacillus vallismortis DV1-F-3]
Length = 157
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + + Q+G+ TK G H+ Y D + +FG ETSGLP E + +
Sbjct: 63 SLEELFEAY--QKGQ--FFFITKFGEQPHTSFDYTDLDEDYFFVFGRETSGLPKELIQNN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 119 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|392425086|ref|YP_006466080.1| putative rRNA methylase SpoU family [Desulfosporosinus acidiphilus
SJ4]
gi|391355049|gb|AFM40748.1| putative rRNA methylase SpoU family [Desulfosporosinus acidiphilus
SJ4]
Length = 156
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 95/165 (57%), Gaps = 10/165 (6%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
N L +V+V P+IP NTG +AR CAA+ LHLV PLGF +DD LKRAGLDYW + I
Sbjct: 1 MNNRLNIVMVEPEIPPNTGNVARLCAATGAALHLVKPLGFSIDDKHLKRAGLDYWHLLDI 60
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
+ + EF + + R LA TK G S +S+I Y G YLIFG ET GL PE L
Sbjct: 61 YYYENFNEFEE---KNPHGLRYLATTKGGRS-YSDIVYEPGGYLIFGKETKGLSPEIL-- 114
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ TIR+PM R LNLS SV + VYE RQ + L
Sbjct: 115 ---ARYPDKTIRLPM-RAEARSLNLSNSVAVVVYEVLRQWGFPSL 155
>gi|387770483|ref|ZP_10126663.1| RNA methyltransferase, TrmH family, group 2 [Pasteurella bettyae
CCUG 2042]
gi|386904294|gb|EIJ69090.1| RNA methyltransferase, TrmH family, group 2 [Pasteurella bettyae
CCUG 2042]
Length = 159
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANCGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKKH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HSE+ + GDYL+FG ET G+P L
Sbjct: 61 KTY----EAFLESEQPKRLFALTTKGGPAHSEVKFELGDYLMFGPETRGIPMSILDKMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYQ 151
>gi|423122692|ref|ZP_17110376.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5246]
gi|376391973|gb|EHT04640.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5246]
Length = 157
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + R Q RL A T +GT HS +SY+ GD+L+FG ET GL P ++LD
Sbjct: 61 RDYAAFVESARPQ----RLFALTTKGTPAHSAVSYQDGDFLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 ---AQQKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|451821920|ref|YP_007458121.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451787899|gb|AGF58867.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 153
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 101/162 (62%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF++++ ++KRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTNSKLHLIKPLGFEINEKQVKRAGLDYWKDLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ D F ++ G+K++ T + EI +++GD+++FG ET G+P E E
Sbjct: 63 SY----DDFMKKYGDKKIYLSTTHAEAHFDEICFQEGDFIMFGRETCGVPEEV----HKE 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G RIPM+++ R LNLS +V I YEA RQ+ + +K
Sbjct: 115 NIG---FRIPMIKSSTRSLNLSNTVAIVAYEALRQIGFPNMK 153
>gi|432555700|ref|ZP_19792417.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE47]
gi|432618877|ref|ZP_19854974.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE75]
gi|431080823|gb|ELD87609.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE47]
gi|431150392|gb|ELE51442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE75]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPT 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|24114875|ref|NP_709385.1| rRNA methylase [Shigella flexneri 2a str. 301]
gi|30065118|ref|NP_839289.1| tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a str. 2457T]
gi|74314157|ref|YP_312576.1| tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046]
gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227]
gi|110807718|ref|YP_691238.1| tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str. 8401]
gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC
3083-94]
gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
84-1]
gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
124-1]
gi|383180877|ref|YP_005458882.1| putative rRNA methylase [Shigella sonnei 53G]
gi|384545181|ref|YP_005729245.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri
2002017]
gi|414578506|ref|ZP_11435672.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
sonnei 3233-85]
gi|415847875|ref|ZP_11525989.1| spoU rRNA Methylase family protein [Shigella sonnei 53G]
gi|415858479|ref|ZP_11532994.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str.
2457T]
gi|415865541|ref|ZP_11538354.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
85-1]
gi|416264329|ref|ZP_11641011.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC
74-1112]
gi|416293879|ref|ZP_11650593.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC
796-83]
gi|417641528|ref|ZP_12291654.1| spoU rRNA Methylase family protein [Escherichia coli TX1999]
gi|417704785|ref|ZP_12353878.1| spoU rRNA Methylase family protein [Shigella flexneri K-218]
gi|417709942|ref|ZP_12358956.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6]
gi|417714911|ref|ZP_12363860.1| spoU rRNA Methylase family protein [Shigella flexneri K-272]
gi|417719852|ref|ZP_12368729.1| spoU rRNA Methylase family protein [Shigella flexneri K-227]
gi|417725585|ref|ZP_12374366.1| spoU rRNA Methylase family protein [Shigella flexneri K-304]
gi|417730866|ref|ZP_12379547.1| spoU rRNA Methylase family protein [Shigella flexneri K-671]
gi|417736041|ref|ZP_12384676.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71]
gi|417740745|ref|ZP_12389310.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70]
gi|417745795|ref|ZP_12394312.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
gi|417830278|ref|ZP_12476814.1| spoU rRNA Methylase family protein [Shigella flexneri J1713]
gi|418259867|ref|ZP_12882514.1| spoU rRNA Methylase family protein [Shigella flexneri 6603-63]
gi|418269426|ref|ZP_12887841.1| spoU rRNA Methylase family protein [Shigella sonnei str. Moseley]
gi|419172463|ref|ZP_13716338.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC7A]
gi|419183030|ref|ZP_13726638.1| spoU rRNA Methylase family protein [Escherichia coli DEC7C]
gi|419188646|ref|ZP_13732150.1| spoU rRNA Methylase family protein [Escherichia coli DEC7D]
gi|419194029|ref|ZP_13737466.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC7E]
gi|419929082|ref|ZP_14446771.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 541-1]
gi|420322925|ref|ZP_14824742.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri 2850-71]
gi|420328080|ref|ZP_14829818.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri CCH060]
gi|420334073|ref|ZP_14835702.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri K-1770]
gi|420338618|ref|ZP_14840172.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri K-315]
gi|420355142|ref|ZP_14856216.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
boydii 4444-74]
gi|420361061|ref|ZP_14862009.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
sonnei 3226-85]
gi|420365607|ref|ZP_14866470.1| spoU rRNA Methylase family protein [Shigella sonnei 4822-66]
gi|420382921|ref|ZP_14882346.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
dysenteriae 225-75]
gi|420387888|ref|ZP_14887221.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli EPECa12]
gi|421685078|ref|ZP_16124855.1| spoU rRNA Methylase family protein [Shigella flexneri 1485-80]
gi|424840091|ref|ZP_18264728.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5a
str. M90T]
gi|425424621|ref|ZP_18805769.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
0.1288]
gi|427806805|ref|ZP_18973872.1| hypothetical protein BN16_42411 [Escherichia coli chi7122]
gi|427811392|ref|ZP_18978457.1| hypothetical protein BN17_35511 [Escherichia coli]
gi|433132173|ref|ZP_20317595.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE163]
gi|433136869|ref|ZP_20322192.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE166]
gi|443619680|ref|YP_007383536.1| rRNA methylase [Escherichia coli APEC O78]
gi|24054114|gb|AAN45092.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T]
gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC
3083-94]
gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri
2002017]
gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
84-1]
gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
124-1]
gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str.
2457T]
gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
85-1]
gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC
74-1112]
gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC
796-83]
gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G]
gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671]
gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70]
gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71]
gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6]
gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218]
gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272]
gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304]
gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227]
gi|335572933|gb|EGM59296.1| spoU rRNA Methylase family protein [Shigella flexneri J1713]
gi|345390492|gb|EGX20290.1| spoU rRNA Methylase family protein [Escherichia coli TX1999]
gi|378012039|gb|EHV74974.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC7A]
gi|378021242|gb|EHV83955.1| spoU rRNA Methylase family protein [Escherichia coli DEC7C]
gi|378024666|gb|EHV87319.1| spoU rRNA Methylase family protein [Escherichia coli DEC7D]
gi|378034450|gb|EHV97015.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC7E]
gi|383469143|gb|EID64164.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5a
str. M90T]
gi|388404173|gb|EIL64661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 541-1]
gi|391243509|gb|EIQ02802.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri K-1770]
gi|391244484|gb|EIQ03768.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri 2850-71]
gi|391245745|gb|EIQ05012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri CCH060]
gi|391257933|gb|EIQ17041.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
flexneri K-315]
gi|391273580|gb|EIQ32404.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
boydii 4444-74]
gi|391277957|gb|EIQ36681.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
sonnei 3226-85]
gi|391281121|gb|EIQ39774.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
sonnei 3233-85]
gi|391291929|gb|EIQ50289.1| spoU rRNA Methylase family protein [Shigella sonnei 4822-66]
gi|391297787|gb|EIQ55826.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Shigella
dysenteriae 225-75]
gi|391301906|gb|EIQ59783.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli EPECa12]
gi|397894038|gb|EJL10490.1| spoU rRNA Methylase family protein [Shigella flexneri 6603-63]
gi|397895533|gb|EJL11961.1| spoU rRNA Methylase family protein [Shigella sonnei str. Moseley]
gi|404335044|gb|EJZ61519.1| spoU rRNA Methylase family protein [Shigella flexneri 1485-80]
gi|408340746|gb|EKJ55226.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
0.1288]
gi|412964987|emb|CCK48917.1| hypothetical protein BN16_42411 [Escherichia coli chi7122]
gi|412971571|emb|CCJ46233.1| hypothetical protein BN17_35511 [Escherichia coli]
gi|431642916|gb|ELJ10621.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE163]
gi|431653066|gb|ELJ20178.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE166]
gi|443424188|gb|AGC89092.1| rRNA methylase [Escherichia coli APEC O78]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli str. K-12 substr. MG1655]
gi|26250250|ref|NP_756290.1| tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073]
gi|91213120|ref|YP_543106.1| tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89]
gi|110643850|ref|YP_671580.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 536]
gi|117625884|ref|YP_859207.1| tRNA/rRNA methyltransferase YibK [Escherichia coli APEC O1]
gi|170083114|ref|YP_001732434.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli str.
K-12 substr. DH10B]
gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
SMS-3-5]
gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
gi|215488886|ref|YP_002331317.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6 str.
E2348/69]
gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88]
gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a]
gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39]
gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli
UMN026]
gi|222158312|ref|YP_002558451.1| tRNA/rRNA methyltransferase yibK [Escherichia coli LF82]
gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|238902697|ref|YP_002928493.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli BW2952]
gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354]
gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
198-1]
gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
21-1]
gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
116-1]
gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
175-1]
gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
200-1]
gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
45-1]
gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
69-1]
gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
196-1]
gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
185-1]
gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
146-1]
gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA206]
gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA143]
gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
gi|378710949|ref|YP_005275842.1| TrmH family RNA methyltransferase [Escherichia coli KO11FL]
gi|386593686|ref|YP_006090086.1| TrmH family RNA methyltransferase [Escherichia coli DH1]
gi|386601642|ref|YP_006103148.1| TrmH family RNA methyltransferase [Escherichia coli IHE3034]
gi|386606199|ref|YP_006112499.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146]
gi|386610980|ref|YP_006126466.1| rRNA methylase [Escherichia coli W]
gi|386616408|ref|YP_006136074.1| hypothetical protein UMNK88_4393 [Escherichia coli UMNK88]
gi|386621293|ref|YP_006140873.1| tRNA cytosine34-2'-O-methyltransferase [Escherichia coli NA114]
gi|386626428|ref|YP_006146156.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli O7:K1 str. CE10]
gi|386631522|ref|YP_006151242.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli str.
'clone D i2']
gi|386636442|ref|YP_006156161.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli str.
'clone D i14']
gi|386641216|ref|YP_006108014.1| RNA methyltransferase [Escherichia coli ABU 83972]
gi|386699432|ref|YP_006163269.1| putative rRNA methylase [Escherichia coli KO11FL]
gi|386711504|ref|YP_006175225.1| putative rRNA methylase [Escherichia coli W]
gi|387614274|ref|YP_006117390.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407]
gi|387618909|ref|YP_006121931.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1
str. NRG 857C]
gi|387623264|ref|YP_006130892.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1]
gi|387831495|ref|YP_003351432.1| putative RNA methyltransferase [Escherichia coli SE15]
gi|388479633|ref|YP_491827.1| rRNA methylase [Escherichia coli str. K-12 substr. W3110]
gi|404377003|ref|ZP_10982145.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
sp. 1_1_43]
gi|415774030|ref|ZP_11486577.1| spoU rRNA Methylase family protein [Escherichia coli 3431]
gi|415838673|ref|ZP_11520615.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1]
gi|416338214|ref|ZP_11674448.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
WV_060327]
gi|417087496|ref|ZP_11954424.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli cloneA_i1]
gi|417142300|ref|ZP_11984875.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
97.0259]
gi|417264545|ref|ZP_12051939.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
2.3916]
gi|417273328|ref|ZP_12060675.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
2.4168]
gi|417279224|ref|ZP_12066534.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
3.2303]
gi|417282413|ref|ZP_12069713.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 3003]
gi|417286146|ref|ZP_12073437.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TW07793]
gi|417294073|ref|ZP_12081352.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B41]
gi|417310155|ref|ZP_12096975.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli PCN033]
gi|417588743|ref|ZP_12239505.1| spoU rRNA Methylase family protein [Escherichia coli STEC_C165-02]
gi|417615198|ref|ZP_12265648.1| spoU rRNA Methylase family protein [Escherichia coli STEC_EH250]
gi|417620272|ref|ZP_12270675.1| spoU rRNA Methylase family protein [Escherichia coli G58-1]
gi|417636578|ref|ZP_12286786.1| spoU rRNA Methylase family protein [Escherichia coli STEC_S1191]
gi|417664200|ref|ZP_12313780.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86]
gi|417757965|ref|ZP_12406029.1| spoU rRNA Methylase family protein [Escherichia coli DEC2B]
gi|417945570|ref|ZP_12588801.1| putative rRNA methylase [Escherichia coli XH140A]
gi|417978877|ref|ZP_12619630.1| putative rRNA methylase [Escherichia coli XH001]
gi|418305245|ref|ZP_12917039.1| spoU rRNA Methylase family protein [Escherichia coli UMNF18]
gi|418955986|ref|ZP_13507919.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli J53]
gi|418999013|ref|ZP_13546595.1| spoU rRNA Methylase family protein [Escherichia coli DEC1A]
gi|419004337|ref|ZP_13551847.1| spoU rRNA Methylase family protein [Escherichia coli DEC1B]
gi|419010016|ref|ZP_13557431.1| spoU rRNA Methylase family protein [Escherichia coli DEC1C]
gi|419015656|ref|ZP_13562992.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC1D]
gi|419020650|ref|ZP_13567947.1| spoU rRNA Methylase family protein [Escherichia coli DEC1E]
gi|419026107|ref|ZP_13573324.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC2A]
gi|419031244|ref|ZP_13578388.1| spoU rRNA Methylase family protein [Escherichia coli DEC2C]
gi|419036845|ref|ZP_13583919.1| spoU rRNA Methylase family protein [Escherichia coli DEC2D]
gi|419041945|ref|ZP_13588962.1| spoU rRNA Methylase family protein [Escherichia coli DEC2E]
gi|419144714|ref|ZP_13689441.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC6A]
gi|419150480|ref|ZP_13695128.1| spoU rRNA Methylase family protein [Escherichia coli DEC6B]
gi|419156111|ref|ZP_13700666.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC6C]
gi|419161454|ref|ZP_13705947.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC6D]
gi|419166495|ref|ZP_13710944.1| spoU rRNA Methylase family protein [Escherichia coli DEC6E]
gi|419177287|ref|ZP_13721096.1| spoU rRNA Methylase family protein [Escherichia coli DEC7B]
gi|419702448|ref|ZP_14230041.1| putative rRNA methylase [Escherichia coli SCI-07]
gi|419810670|ref|ZP_14335549.1| putative rRNA methylase [Escherichia coli O32:H37 str. P4]
gi|419912147|ref|ZP_14430606.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli KD1]
gi|419917479|ref|ZP_14435724.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli KD2]
gi|419934152|ref|ZP_14451296.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 576-1]
gi|419939967|ref|ZP_14456736.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 75]
gi|419943853|ref|ZP_14460366.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HM605]
gi|421777600|ref|ZP_16214194.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli AD30]
gi|422334723|ref|ZP_16415728.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli 4_1_47FAA]
gi|422360821|ref|ZP_16441450.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
110-3]
gi|422364293|ref|ZP_16444811.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
153-1]
gi|422371202|ref|ZP_16451583.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
16-3]
gi|422376079|ref|ZP_16456337.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
60-1]
gi|422380634|ref|ZP_16460808.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
57-2]
gi|422751463|ref|ZP_16805372.1| RNA methyltransferase [Escherichia coli H252]
gi|422756720|ref|ZP_16810542.1| RNA methyltransferase [Escherichia coli H263]
gi|422818773|ref|ZP_16866985.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli M919]
gi|422829782|ref|ZP_16877946.1| hypothetical protein ESNG_02451 [Escherichia coli B093]
gi|422841628|ref|ZP_16889597.1| hypothetical protein ESPG_04283 [Escherichia coli H397]
gi|422977694|ref|ZP_16977438.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli TA124]
gi|423703126|ref|ZP_17677558.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli H730]
gi|425117216|ref|ZP_18518993.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0566]
gi|425121946|ref|ZP_18523621.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0569]
gi|425274832|ref|ZP_18666218.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli TW15901]
gi|425280018|ref|ZP_18671236.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli ARS4.2123]
gi|425285470|ref|ZP_18676483.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli TW00353]
gi|425302476|ref|ZP_18692356.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli 07798]
gi|432355634|ref|ZP_19598899.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE2]
gi|432360072|ref|ZP_19603284.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE4]
gi|432364871|ref|ZP_19608025.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE5]
gi|432383514|ref|ZP_19626439.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE15]
gi|432389422|ref|ZP_19632301.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE16]
gi|432394213|ref|ZP_19637033.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE21]
gi|432399559|ref|ZP_19642332.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE25]
gi|432404007|ref|ZP_19646751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE26]
gi|432408681|ref|ZP_19651383.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE28]
gi|432413845|ref|ZP_19656498.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE39]
gi|432419138|ref|ZP_19661729.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE44]
gi|432424017|ref|ZP_19666554.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE178]
gi|432428275|ref|ZP_19670755.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE181]
gi|432433831|ref|ZP_19676254.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE187]
gi|432438430|ref|ZP_19680812.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE188]
gi|432458743|ref|ZP_19700917.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE201]
gi|432462974|ref|ZP_19705106.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE204]
gi|432467935|ref|ZP_19710012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE205]
gi|432472959|ref|ZP_19714995.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE206]
gi|432477969|ref|ZP_19719955.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE208]
gi|432491391|ref|ZP_19733252.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE213]
gi|432497738|ref|ZP_19739529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE214]
gi|432502170|ref|ZP_19743920.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE216]
gi|432506493|ref|ZP_19748211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE220]
gi|432516007|ref|ZP_19753222.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE224]
gi|432519827|ref|ZP_19757006.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE228]
gi|432525949|ref|ZP_19763064.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE230]
gi|432539990|ref|ZP_19776881.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE235]
gi|432545354|ref|ZP_19782183.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE236]
gi|432550838|ref|ZP_19787591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE237]
gi|432560880|ref|ZP_19797533.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE49]
gi|432565999|ref|ZP_19802555.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE51]
gi|432570849|ref|ZP_19807354.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE53]
gi|432575860|ref|ZP_19812329.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE55]
gi|432585147|ref|ZP_19821538.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE57]
gi|432590047|ref|ZP_19826398.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE58]
gi|432594815|ref|ZP_19831126.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE60]
gi|432599872|ref|ZP_19836141.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE62]
gi|432604442|ref|ZP_19840671.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE66]
gi|432605040|ref|ZP_19841249.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE67]
gi|432613621|ref|ZP_19849778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE72]
gi|432623976|ref|ZP_19859989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE76]
gi|432629241|ref|ZP_19865206.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE77]
gi|432633508|ref|ZP_19869426.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE80]
gi|432638819|ref|ZP_19874682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE81]
gi|432643205|ref|ZP_19879027.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE83]
gi|432648288|ref|ZP_19884073.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE86]
gi|432653214|ref|ZP_19888958.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE87]
gi|432657853|ref|ZP_19893549.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE93]
gi|432662821|ref|ZP_19898451.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE111]
gi|432668198|ref|ZP_19903769.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE116]
gi|432682490|ref|ZP_19917846.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE143]
gi|432687430|ref|ZP_19922718.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE156]
gi|432688880|ref|ZP_19924149.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE161]
gi|432696480|ref|ZP_19931671.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE162]
gi|432701133|ref|ZP_19936277.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE169]
gi|432706348|ref|ZP_19941442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE171]
gi|432707955|ref|ZP_19943030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE6]
gi|432715465|ref|ZP_19950489.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE8]
gi|432725077|ref|ZP_19959990.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE17]
gi|432729658|ref|ZP_19964531.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE18]
gi|432734373|ref|ZP_19969195.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE45]
gi|432739115|ref|ZP_19973843.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE42]
gi|432743348|ref|ZP_19978062.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE23]
gi|432747593|ref|ZP_19982254.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE43]
gi|432756550|ref|ZP_19991093.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE22]
gi|432761458|ref|ZP_19995946.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE46]
gi|432767982|ref|ZP_20002373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE50]
gi|432772384|ref|ZP_20006696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE54]
gi|432780626|ref|ZP_20014845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE59]
gi|432785587|ref|ZP_20019763.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE63]
gi|432789619|ref|ZP_20023745.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE65]
gi|432794834|ref|ZP_20028912.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE78]
gi|432796350|ref|ZP_20030387.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE79]
gi|432803811|ref|ZP_20037762.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE84]
gi|432817386|ref|ZP_20051141.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE115]
gi|432823055|ref|ZP_20056742.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE118]
gi|432824514|ref|ZP_20058177.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE123]
gi|432841420|ref|ZP_20074877.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE140]
gi|432846736|ref|ZP_20079339.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE141]
gi|432855473|ref|ZP_20083309.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE144]
gi|432865932|ref|ZP_20088782.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE146]
gi|432871212|ref|ZP_20091532.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE147]
gi|432889090|ref|ZP_20102679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE158]
gi|432891162|ref|ZP_20103920.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE165]
gi|432901160|ref|ZP_20111272.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE192]
gi|432907319|ref|ZP_20115795.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE194]
gi|432915207|ref|ZP_20120534.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE190]
gi|432922869|ref|ZP_20125592.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE173]
gi|432929478|ref|ZP_20130528.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE175]
gi|432940425|ref|ZP_20138339.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE183]
gi|432957556|ref|ZP_20148962.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE197]
gi|432964326|ref|ZP_20153485.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE202]
gi|432973891|ref|ZP_20162734.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE207]
gi|432975825|ref|ZP_20164657.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE209]
gi|432983059|ref|ZP_20171828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE211]
gi|432987464|ref|ZP_20176175.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE215]
gi|432992718|ref|ZP_20181366.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE217]
gi|432997384|ref|ZP_20185964.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE218]
gi|433001979|ref|ZP_20190496.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE223]
gi|433007204|ref|ZP_20195626.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE227]
gi|433009820|ref|ZP_20198231.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE229]
gi|433020858|ref|ZP_20208944.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE105]
gi|433030545|ref|ZP_20218391.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE109]
gi|433040626|ref|ZP_20228214.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE113]
gi|433050068|ref|ZP_20237391.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE120]
gi|433055281|ref|ZP_20242438.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE122]
gi|433060125|ref|ZP_20247156.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE124]
gi|433065077|ref|ZP_20251980.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE125]
gi|433069969|ref|ZP_20256736.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE128]
gi|433074880|ref|ZP_20261517.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE129]
gi|433079806|ref|ZP_20266322.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE131]
gi|433084545|ref|ZP_20270990.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE133]
gi|433089328|ref|ZP_20275686.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE137]
gi|433098435|ref|ZP_20284602.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE139]
gi|433103216|ref|ZP_20289285.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE145]
gi|433107873|ref|ZP_20293832.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE148]
gi|433112853|ref|ZP_20298703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE150]
gi|433117532|ref|ZP_20303311.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE153]
gi|433122236|ref|ZP_20307891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE157]
gi|433127234|ref|ZP_20312775.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE160]
gi|433141308|ref|ZP_20326545.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE167]
gi|433146255|ref|ZP_20331385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE168]
gi|433151260|ref|ZP_20336256.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE174]
gi|433155797|ref|ZP_20340724.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE176]
gi|433160764|ref|ZP_20345581.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE177]
gi|433165636|ref|ZP_20350361.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE179]
gi|433170631|ref|ZP_20355247.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE180]
gi|433180483|ref|ZP_20364859.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE82]
gi|433185342|ref|ZP_20369576.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE85]
gi|433190424|ref|ZP_20374510.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE88]
gi|433205349|ref|ZP_20389094.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE95]
gi|433209756|ref|ZP_20393419.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE97]
gi|433214603|ref|ZP_20398180.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE99]
gi|442605631|ref|ZP_21020447.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli Nissle
1917]
gi|450194462|ref|ZP_21892385.1| putative rRNA methylase [Escherichia coli SEPT362]
gi|450252498|ref|ZP_21902084.1| rRNA methylase [Escherichia coli S17]
gi|84028007|sp|P0AGJ8.1|TRML_ECOL6 RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
gi|84028008|sp|P0AGJ7.1|TRML_ECOLI RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli
CFT073]
gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr.
MG1655]
gi|1790034|gb|AAC76630.1| tRNA Leu mC34,mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli str. K-12 substr. MG1655]
gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110]
gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89]
gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli
536]
gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1]
gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
SMS-3-5]
gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69]
gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88]
gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39]
gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a]
gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026]
gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli
LF82]
gi|226838771|gb|EEH70798.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
sp. 1_1_43]
gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952]
gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1]
gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15]
gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354]
gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
IHE3034]
gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
196-1]
gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
185-1]
gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
200-1]
gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
175-1]
gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
198-1]
gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
69-1]
gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
45-1]
gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
116-1]
gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
21-1]
gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
146-1]
gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972]
gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146]
gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407]
gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1
str. NRG 857C]
gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W]
gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1]
gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
110-3]
gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
153-1]
gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
16-3]
gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431]
gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
WV_060327]
gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1]
gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
KO11FL]
gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252]
gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263]
gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
57-2]
gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
60-1]
gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86]
gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA206]
gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TA143]
gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333971794|gb|AEG38599.1| tRNA cytosine34-2'-O-methyltransferase [Escherichia coli NA114]
gi|338768205|gb|EGP23005.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli PCN033]
gi|339417343|gb|AEJ59015.1| spoU rRNA Methylase family protein [Escherichia coli UMNF18]
gi|342362641|gb|EGU26757.1| putative rRNA methylase [Escherichia coli XH140A]
gi|344191482|gb|EGV45599.1| putative rRNA methylase [Escherichia coli XH001]
gi|345331742|gb|EGW64201.1| spoU rRNA Methylase family protein [Escherichia coli STEC_C165-02]
gi|345358476|gb|EGW90662.1| spoU rRNA Methylase family protein [Escherichia coli STEC_EH250]
gi|345370677|gb|EGX02653.1| spoU rRNA Methylase family protein [Escherichia coli G58-1]
gi|345385083|gb|EGX14931.1| spoU rRNA Methylase family protein [Escherichia coli STEC_S1191]
gi|349740164|gb|AEQ14870.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli O7:K1 str. CE10]
gi|355349596|gb|EHF98799.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
[Escherichia coli cloneA_i1]
gi|355422421|gb|AER86618.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli str.
'clone D i2']
gi|355427341|gb|AER91537.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli str.
'clone D i14']
gi|359333753|dbj|BAL40200.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. MDS42]
gi|371593066|gb|EHN81955.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli TA124]
gi|371603946|gb|EHN92580.1| hypothetical protein ESPG_04283 [Escherichia coli H397]
gi|371607734|gb|EHN96299.1| hypothetical protein ESNG_02451 [Escherichia coli B093]
gi|373244332|gb|EHP63819.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli 4_1_47FAA]
gi|377839682|gb|EHU04762.1| spoU rRNA Methylase family protein [Escherichia coli DEC1C]
gi|377839957|gb|EHU05036.1| spoU rRNA Methylase family protein [Escherichia coli DEC1A]
gi|377842826|gb|EHU07875.1| spoU rRNA Methylase family protein [Escherichia coli DEC1B]
gi|377853295|gb|EHU18195.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC1D]
gi|377856611|gb|EHU21470.1| spoU rRNA Methylase family protein [Escherichia coli DEC1E]
gi|377859656|gb|EHU24486.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC2A]
gi|377870893|gb|EHU35566.1| spoU rRNA Methylase family protein [Escherichia coli DEC2B]
gi|377873224|gb|EHU37862.1| spoU rRNA Methylase family protein [Escherichia coli DEC2C]
gi|377875299|gb|EHU39913.1| spoU rRNA Methylase family protein [Escherichia coli DEC2D]
gi|377886657|gb|EHU51138.1| spoU rRNA Methylase family protein [Escherichia coli DEC2E]
gi|377989144|gb|EHV52312.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC6A]
gi|377989771|gb|EHV52937.1| spoU rRNA Methylase family protein [Escherichia coli DEC6B]
gi|377993180|gb|EHV56318.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC6C]
gi|378004254|gb|EHV67278.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC6D]
gi|378006719|gb|EHV69692.1| spoU rRNA Methylase family protein [Escherichia coli DEC6E]
gi|378029469|gb|EHV92080.1| spoU rRNA Methylase family protein [Escherichia coli DEC7B]
gi|380346276|gb|EIA34571.1| putative rRNA methylase [Escherichia coli SCI-07]
gi|383390959|gb|AFH15917.1| putative rRNA methylase [Escherichia coli KO11FL]
gi|383407196|gb|AFH13439.1| putative rRNA methylase [Escherichia coli W]
gi|384381377|gb|EIE39236.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli J53]
gi|385156305|gb|EIF18302.1| putative rRNA methylase [Escherichia coli O32:H37 str. P4]
gi|385537576|gb|EIF84446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli M919]
gi|385708683|gb|EIG45688.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli H730]
gi|386155324|gb|EIH11679.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
97.0259]
gi|386222254|gb|EII44683.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
2.3916]
gi|386234505|gb|EII66483.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
2.4168]
gi|386238001|gb|EII74941.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
3.2303]
gi|386246742|gb|EII88472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli 3003]
gi|386251387|gb|EII97554.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
TW07793]
gi|386252261|gb|EIJ01953.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B41]
gi|388392246|gb|EIL53673.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli KD1]
gi|388393943|gb|EIL55283.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli KD2]
gi|388404729|gb|EIL65176.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 75]
gi|388409715|gb|EIL69987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 576-1]
gi|388420050|gb|EIL79755.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HM605]
gi|408190109|gb|EKI15784.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli TW15901]
gi|408198092|gb|EKI23336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli ARS4.2123]
gi|408198139|gb|EKI23382.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli TW00353]
gi|408210813|gb|EKI35370.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli 07798]
gi|408457364|gb|EKJ81161.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli AD30]
gi|408563596|gb|EKK39727.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0566]
gi|408564691|gb|EKK40792.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0569]
gi|430872473|gb|ELB96077.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE2]
gi|430873206|gb|ELB96781.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE4]
gi|430883161|gb|ELC06165.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE5]
gi|430903413|gb|ELC25150.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE16]
gi|430903899|gb|ELC25635.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE15]
gi|430912721|gb|ELC33893.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE25]
gi|430914362|gb|ELC35458.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE21]
gi|430923420|gb|ELC44157.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE26]
gi|430926055|gb|ELC46643.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE28]
gi|430932871|gb|ELC53289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE39]
gi|430936194|gb|ELC56477.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE44]
gi|430941645|gb|ELC61787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE178]
gi|430950101|gb|ELC69489.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE187]
gi|430950504|gb|ELC69733.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE181]
gi|430960452|gb|ELC78607.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE188]
gi|430979268|gb|ELC96053.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE201]
gi|430985554|gb|ELD02151.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE204]
gi|430990877|gb|ELD07297.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE205]
gi|430995406|gb|ELD11699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE206]
gi|431001998|gb|ELD17564.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE208]
gi|431017877|gb|ELD31330.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE213]
gi|431020746|gb|ELD34081.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE214]
gi|431025838|gb|ELD38924.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE216]
gi|431035313|gb|ELD46703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE220]
gi|431038702|gb|ELD49598.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE224]
gi|431048079|gb|ELD58064.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE228]
gi|431048243|gb|ELD58226.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE230]
gi|431066817|gb|ELD75438.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE235]
gi|431071203|gb|ELD79346.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE236]
gi|431076326|gb|ELD83822.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE237]
gi|431088375|gb|ELD94253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE49]
gi|431089567|gb|ELD95373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE51]
gi|431097015|gb|ELE02464.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE53]
gi|431104633|gb|ELE09006.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE55]
gi|431115047|gb|ELE18574.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE57]
gi|431117559|gb|ELE20787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE58]
gi|431125716|gb|ELE28113.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE60]
gi|431127747|gb|ELE30041.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE62]
gi|431137081|gb|ELE38929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE66]
gi|431144062|gb|ELE45769.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE67]
gi|431146643|gb|ELE48079.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE72]
gi|431155761|gb|ELE56503.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE76]
gi|431160177|gb|ELE60692.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE77]
gi|431167195|gb|ELE67476.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE80]
gi|431168295|gb|ELE68541.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE81]
gi|431177376|gb|ELE77307.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE83]
gi|431178261|gb|ELE78174.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE86]
gi|431187096|gb|ELE86610.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE87]
gi|431187964|gb|ELE87463.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE93]
gi|431196756|gb|ELE95661.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE111]
gi|431197540|gb|ELE96387.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE116]
gi|431217464|gb|ELF15043.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE143]
gi|431219081|gb|ELF16499.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE156]
gi|431231124|gb|ELF26892.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE162]
gi|431235602|gb|ELF30851.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE161]
gi|431240244|gb|ELF34706.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE169]
gi|431240538|gb|ELF34989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE171]
gi|431251721|gb|ELF45727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE8]
gi|431254909|gb|ELF48170.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE6]
gi|431262296|gb|ELF54286.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE17]
gi|431270799|gb|ELF61942.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE18]
gi|431270986|gb|ELF62128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE45]
gi|431279215|gb|ELF70183.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE42]
gi|431281505|gb|ELF72408.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE23]
gi|431289493|gb|ELF80234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE43]
gi|431299438|gb|ELF89009.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE22]
gi|431305394|gb|ELF93717.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE46]
gi|431321872|gb|ELG09468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE50]
gi|431323473|gb|ELG10966.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE54]
gi|431324467|gb|ELG11919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE59]
gi|431325909|gb|ELG13272.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE63]
gi|431334788|gb|ELG21932.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE65]
gi|431336431|gb|ELG23541.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE78]
gi|431345559|gb|ELG32475.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE84]
gi|431348411|gb|ELG35268.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE79]
gi|431360526|gb|ELG47129.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE115]
gi|431365264|gb|ELG51778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE118]
gi|431377456|gb|ELG62582.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE123]
gi|431385883|gb|ELG69848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE140]
gi|431392269|gb|ELG75868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE141]
gi|431397485|gb|ELG80939.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE144]
gi|431401861|gb|ELG85193.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE146]
gi|431408212|gb|ELG91403.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE147]
gi|431413417|gb|ELG96183.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE158]
gi|431422201|gb|ELH04394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE192]
gi|431428285|gb|ELH10227.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE194]
gi|431430277|gb|ELH12109.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE165]
gi|431434789|gb|ELH16403.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE173]
gi|431436275|gb|ELH17882.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE190]
gi|431440886|gb|ELH22214.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE175]
gi|431460319|gb|ELH40608.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE183]
gi|431463434|gb|ELH43624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE197]
gi|431468475|gb|ELH48409.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE202]
gi|431479238|gb|ELH58981.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE207]
gi|431485491|gb|ELH65150.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE209]
gi|431488817|gb|ELH68447.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE211]
gi|431490736|gb|ELH70344.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE217]
gi|431494222|gb|ELH73811.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE215]
gi|431502076|gb|ELH80968.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE218]
gi|431504251|gb|ELH82877.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE223]
gi|431509811|gb|ELH88059.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE227]
gi|431521202|gb|ELH98450.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE229]
gi|431526851|gb|ELI03586.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE105]
gi|431540177|gb|ELI15804.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE109]
gi|431548463|gb|ELI22744.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE113]
gi|431561915|gb|ELI35251.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE120]
gi|431565730|gb|ELI38805.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE124]
gi|431565982|gb|ELI39027.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE122]
gi|431577967|gb|ELI50583.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE125]
gi|431578871|gb|ELI51458.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE128]
gi|431583395|gb|ELI55400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE129]
gi|431593853|gb|ELI64144.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE131]
gi|431597949|gb|ELI67850.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE133]
gi|431600616|gb|ELI70283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE137]
gi|431612435|gb|ELI81682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE139]
gi|431615979|gb|ELI85047.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE145]
gi|431623771|gb|ELI92397.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE148]
gi|431625191|gb|ELI93784.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE150]
gi|431630492|gb|ELI98821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE153]
gi|431638754|gb|ELJ06632.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE157]
gi|431640110|gb|ELJ07871.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE160]
gi|431655731|gb|ELJ22761.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE167]
gi|431657440|gb|ELJ24404.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE168]
gi|431667051|gb|ELJ33643.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE174]
gi|431670228|gb|ELJ36582.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE176]
gi|431673673|gb|ELJ39865.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE177]
gi|431683532|gb|ELJ49161.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE179]
gi|431683956|gb|ELJ49577.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE180]
gi|431697911|gb|ELJ62994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE82]
gi|431702064|gb|ELJ66865.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE88]
gi|431702312|gb|ELJ67112.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE85]
gi|431716148|gb|ELJ80285.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE95]
gi|431728036|gb|ELJ91757.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE97]
gi|431731761|gb|ELJ95223.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE99]
gi|441713313|emb|CCQ06424.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli Nissle
1917]
gi|449314573|gb|EMD04736.1| rRNA methylase [Escherichia coli S17]
gi|449316693|gb|EMD06801.1| putative rRNA methylase [Escherichia coli SEPT362]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|393775325|ref|ZP_10363639.1| rrna methylase ( class) [Ralstonia sp. PBA]
gi|392717902|gb|EIZ05462.1| rrna methylase ( class) [Ralstonia sp. PBA]
Length = 156
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHLV PLGF +DD +L+RAGLDY Y +KVH
Sbjct: 1 MFHVVLVAPEIPPNTGNVIRLCANTGAQLHLVKPLGFDIDDARLRRAGLDYHEYATMKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W +Q R+ A T RG++ + ++++ GD+ IFGSETSGL P L D
Sbjct: 61 DDWEAL--LAAEQPDTARMFAMTTRGSTPFANLAFQPGDWFIFGSETSGL-PATLRDSFP 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
IR+PM R LNLS SV + VYEA RQ Y+
Sbjct: 118 P---AQRIRLPM-RPGNRSLNLSNSVAVVVYEAWRQAGYD 153
>gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans
MPOB]
gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans
MPOB]
Length = 164
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 103/175 (58%), Gaps = 15/175 (8%)
Query: 72 GLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPY 131
G QVVL P+IP NTG IARTCAA+ LHLV PLGF++ D LKRAGLDYWP+
Sbjct: 3 GHGGKSVFQVVLYQPEIPQNTGNIARTCAATHTPLHLVEPLGFRITDRGLKRAGLDYWPH 62
Query: 132 VVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
V +KVH + ++ G++R + F+ + + ++ GD L FGSE+ GLP +
Sbjct: 63 VRLKVHPDL----ESLCREIGDRRWVYFSAHADRRYCDFRFQPGDCLFFGSESFGLPNDL 118
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
L+ + G I IP+ VR LNL+ SVGIA++EA RQL T+ D C
Sbjct: 119 LV-----SRPGFVINIPINRARVRSLNLATSVGIALFEALRQL------TSHDDC 162
>gi|432443107|ref|ZP_19685441.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE189]
gi|432448225|ref|ZP_19690520.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE191]
gi|433015933|ref|ZP_20204262.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE104]
gi|433025497|ref|ZP_20213466.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE106]
gi|433321777|ref|ZP_20399335.1| rRNA methylase [Escherichia coli J96]
gi|430963310|gb|ELC80897.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE189]
gi|430970610|gb|ELC87655.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE191]
gi|431526501|gb|ELI03249.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE104]
gi|431531225|gb|ELI07893.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE106]
gi|432349580|gb|ELL44007.1| rRNA methylase [Escherichia coli J96]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRT----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|397162949|ref|ZP_10486414.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Enterobacter
radicincitans DSM 16656]
gi|396095096|gb|EJI92641.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Enterobacter
radicincitans DSM 16656]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + +K H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFAAVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + + +RL A T +GT HS +S++ GDYL+FG ET GL P +LD
Sbjct: 61 ADYAA----FVEAQQPQRLFALTTKGTPAHSAVSFQDGDYLMFGPETRGL-PATILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 PQ---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 156
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV P+IP NTG IARTC + LHLV PLGF +D+ +KRAGLDYWP + + V+
Sbjct: 3 LNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F Q +G+K LA TK H ++ Y Y++FG ET+GLP + E
Sbjct: 63 NLEQF---LEQNKGKKFYLATTKARKYYH-DVKYEDNSYILFGKETAGLPKWLI-----E 113
Query: 199 TFGGGTIRIPMVETY-VRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM E R LNLS SV I +YEA RQL + +K
Sbjct: 114 KYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|15924845|ref|NP_372379.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus
N315]
gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus
MW2]
gi|49484097|ref|YP_041321.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122]
gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M876]
gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9635]
gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300]
gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5937]
gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A8117]
gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C160]
gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M899]
gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus D139]
gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus C427]
gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C101]
gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A10102]
gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus H19]
gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M809]
gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M1015]
gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|379021615|ref|YP_005298277.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|384548075|ref|YP_005737328.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus
ED133]
gi|384865060|ref|YP_005750419.1| spoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384867175|ref|YP_005747371.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
gi|385782120|ref|YP_005758291.1| spoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386729543|ref|YP_006195926.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
71193]
gi|386831442|ref|YP_006238096.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387150996|ref|YP_005742560.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus
04-02981]
gi|387603188|ref|YP_005734709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus ST398]
gi|387780919|ref|YP_005755717.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|404479199|ref|YP_006710629.1| SpoU rRNA methylase family protein [Staphylococcus aureus
08BA02176]
gi|415682667|ref|ZP_11447983.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp.
aureus CGS00]
gi|416842211|ref|ZP_11904894.1| rRNA methylase-like protein [Staphylococcus aureus O11]
gi|416848351|ref|ZP_11907711.1| rRNA methylase-like protein [Staphylococcus aureus O46]
gi|417653632|ref|ZP_12303362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21193]
gi|417797164|ref|ZP_12444363.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21305]
gi|417799825|ref|ZP_12446958.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21310]
gi|417802057|ref|ZP_12449130.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21318]
gi|417887709|ref|ZP_12531832.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21195]
gi|417891194|ref|ZP_12535260.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21200]
gi|417893390|ref|ZP_12537420.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21201]
gi|417899159|ref|ZP_12543066.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21259]
gi|417900381|ref|ZP_12544267.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21266]
gi|417903583|ref|ZP_12547424.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21269]
gi|418281696|ref|ZP_12894498.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21202]
gi|418307541|ref|ZP_12919240.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21194]
gi|418310793|ref|ZP_12922326.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21331]
gi|418313915|ref|ZP_12925399.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21334]
gi|418315678|ref|ZP_12927133.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21340]
gi|418322065|ref|ZP_12933403.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VCU006]
gi|418425038|ref|ZP_12998143.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427990|ref|ZP_13000988.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS2]
gi|418431716|ref|ZP_13004605.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418440385|ref|ZP_13012080.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS6]
gi|418449473|ref|ZP_13020852.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS9]
gi|418452273|ref|ZP_13023605.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS10]
gi|418560178|ref|ZP_13124699.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21252]
gi|418562321|ref|ZP_13126779.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21262]
gi|418564723|ref|ZP_13129144.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21264]
gi|418567945|ref|ZP_13132302.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21272]
gi|418573297|ref|ZP_13137495.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21333]
gi|418582797|ref|ZP_13146873.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418596503|ref|ZP_13160062.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21342]
gi|418601971|ref|ZP_13165385.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21345]
gi|418643821|ref|ZP_13205977.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-55]
gi|418656104|ref|ZP_13217925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-105]
gi|418661063|ref|ZP_13222666.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-122]
gi|418875787|ref|ZP_13430041.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418878773|ref|ZP_13433007.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418884513|ref|ZP_13438702.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418887217|ref|ZP_13441359.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418889644|ref|ZP_13443775.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418891088|ref|ZP_13445206.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418894821|ref|ZP_13448917.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418898506|ref|ZP_13452575.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901374|ref|ZP_13455429.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418909780|ref|ZP_13463772.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG149]
gi|418914944|ref|ZP_13468914.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418917772|ref|ZP_13471730.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418923558|ref|ZP_13477472.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418932173|ref|ZP_13486005.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418934808|ref|ZP_13488629.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418951830|ref|ZP_13503900.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-160]
gi|418980572|ref|ZP_13528350.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
DR10]
gi|418982882|ref|ZP_13530589.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418986544|ref|ZP_13534227.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1500]
gi|418988903|ref|ZP_13536574.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418994566|ref|ZP_13542201.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG290]
gi|421148247|ref|ZP_15607907.1| rRNA methylase-like protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443635229|ref|ZP_21119361.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|443638942|ref|ZP_21122968.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus 21196]
gi|448740458|ref|ZP_21722436.1| rRNA methylase [Staphylococcus aureus KT/314250]
gi|448744302|ref|ZP_21726197.1| rRNA methylase [Staphylococcus aureus KT/Y21]
gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122]
gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M876]
gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9635]
gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300]
gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5937]
gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C101]
gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus C427]
gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
aureus subsp. aureus D139]
gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M899]
gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A10102]
gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus C160]
gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A8117]
gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
subsp. aureus H19]
gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus ST398]
gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus
04-02981]
gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M1015]
gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus M809]
gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp.
aureus CGS00]
gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11]
gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46]
gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21193]
gi|334267408|gb|EGL85869.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21305]
gi|334272602|gb|EGL90964.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21310]
gi|334275638|gb|EGL93924.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21318]
gi|341845963|gb|EGS87161.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21259]
gi|341848255|gb|EGS89421.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21266]
gi|341849580|gb|EGS90721.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21269]
gi|341852571|gb|EGS93459.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21200]
gi|341854971|gb|EGS95830.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21201]
gi|341857349|gb|EGS98164.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21195]
gi|344178021|emb|CCC88503.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|359830924|gb|AEV78902.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|364523109|gb|AEW65859.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365172528|gb|EHM63212.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21202]
gi|365223973|gb|EHM65245.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VCU006]
gi|365234948|gb|EHM75871.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21334]
gi|365235951|gb|EHM76857.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21331]
gi|365242812|gb|EHM83509.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21340]
gi|365245555|gb|EHM86186.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21194]
gi|371972721|gb|EHO90094.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21252]
gi|371973900|gb|EHO91244.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21262]
gi|371975860|gb|EHO93152.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21264]
gi|371981056|gb|EHO98248.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21272]
gi|371982565|gb|EHO99717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21333]
gi|374397005|gb|EHQ68223.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21345]
gi|374397724|gb|EHQ68931.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21342]
gi|375027591|gb|EHS20953.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-55]
gi|375034552|gb|EHS27712.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-105]
gi|375039642|gb|EHS32564.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-122]
gi|375371301|gb|EHS75083.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-160]
gi|377693659|gb|EHT18029.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695309|gb|EHT19671.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377702043|gb|EHT26369.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377703648|gb|EHT27962.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377703927|gb|EHT28239.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377709540|gb|EHT33793.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377712274|gb|EHT36494.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377713168|gb|EHT37380.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377716924|gb|EHT41102.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723735|gb|EHT47859.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377733000|gb|EHT57048.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377733435|gb|EHT57478.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377744363|gb|EHT68341.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG290]
gi|377749837|gb|EHT73781.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377751034|gb|EHT74969.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG149]
gi|377751949|gb|EHT75874.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIG1524]
gi|377755600|gb|EHT79499.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377759963|gb|EHT83843.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|377769338|gb|EHT93110.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377770107|gb|EHT93872.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CIGC128]
gi|379991679|gb|EIA13146.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
DR10]
gi|384230836|gb|AFH70083.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
71193]
gi|385196834|emb|CCG16471.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387714974|gb|EIK03083.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387717197|gb|EIK05216.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS2]
gi|387718208|gb|EIK06193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS1]
gi|387729488|gb|EIK16930.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735596|gb|EIK22708.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744020|gb|EIK30798.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus VRS10]
gi|394331390|gb|EJE57473.1| rRNA methylase-like protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|404440688|gb|AFR73881.1| SpoU rRNA methylase family protein [Staphylococcus aureus
08BA02176]
gi|443408040|gb|ELS66569.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus 21196]
gi|443409803|gb|ELS68293.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|445548787|gb|ELY17035.1| rRNA methylase [Staphylococcus aureus KT/314250]
gi|445562362|gb|ELY18537.1| rRNA methylase [Staphylococcus aureus KT/Y21]
Length = 156
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FEATNGEYYLL--TKFGKKTYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E ++R LNLS + + +YEA RQ ++ L
Sbjct: 114 KEKYQDTALRIPMSE-HIRSLNLSNTAALLIYEALRQQDFPGL 155
>gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17]
gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17]
Length = 154
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 15/162 (9%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG I R CA + C LHL+ PLGF ++D +++RAGLDY Y +KVH
Sbjct: 1 MLNVVLYEPEIPPNTGNIIRLCANTGCKLHLIEPLGFTLEDKRMRRAGLDYSEYASVKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPP---EALLD 194
++ F E +RL T +G+ + E+SY++GDYL+FG ET GLP +AL D
Sbjct: 61 KSYPA----FLHSEQPQRLFGLTTKGSHYYHEVSYQEGDYLMFGPETRGLPAPVRDALPD 116
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G +R+PM + R LNLS + + VYEA RQL +
Sbjct: 117 -------GHRLRVPMC-AHSRSLNLSNTAALVVYEAWRQLAF 150
>gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673592|ref|YP_003865264.1| rRNA methylase [Bacillus subtilis subsp. spizizenii str. W23]
gi|350265163|ref|YP_004876470.1| TrmH family RNA methyltransferase [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|443633508|ref|ZP_21117686.1| putative rRNA methylase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|349598050|gb|AEP85838.1| RNA methyltransferase, TrmH family, group 2 [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|443347242|gb|ELS61301.1| putative rRNA methylase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 96/166 (57%), Gaps = 15/166 (9%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAE-FRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLD 194
+ E F +Y Q+G+ TK G H+ Y D + +FG ETSGLP + + +
Sbjct: 63 SLEELFEEY---QKGQ--FFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQN 117
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 118 NMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|392961183|ref|ZP_10326645.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans DSM 17108]
gi|421055173|ref|ZP_15518137.1| RNA methyltransferase, TrmH family, group 2 [Pelosinus fermentans
B4]
gi|421057286|ref|ZP_15520149.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans B3]
gi|421063901|ref|ZP_15525835.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans A12]
gi|421072053|ref|ZP_15533166.1| RNA methyltransferase, TrmH family, group 2 [Pelosinus fermentans
A11]
gi|392440276|gb|EIW17964.1| RNA methyltransferase, TrmH family, group 2 [Pelosinus fermentans
B4]
gi|392446641|gb|EIW23926.1| RNA methyltransferase, TrmH family, group 2 [Pelosinus fermentans
A11]
gi|392454109|gb|EIW30954.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans DSM 17108]
gi|392462054|gb|EIW38173.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans A12]
gi|392463485|gb|EIW39418.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU
[Pelosinus fermentans B3]
Length = 152
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CAA+ LHLV PLGF ++D LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAATDTELHLVKPLGFSIEDKYLKRAGLDYWNLVKVHSHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+AE + ++ T + +S+I ++ D+L+FG ET+GL PE+LL E
Sbjct: 61 NFAEVIELYKGH----NFYFNTTKADQHYSQIQFKADDFLVFGKETAGL-PESLLTEHKE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPMV R LNLS S I +YEA RQ + LK
Sbjct: 116 ----NCIRIPMVSD-ARSLNLSNSAAIVIYEALRQQQFIGLK 152
>gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase SpoU [Desulfitobacterium hafniense
DCB-2]
gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
Length = 155
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG +AR CAA+ LHLV PLGF++ D LKRAGLDYW + I ++
Sbjct: 4 LNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIHIYE 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+AEF + +G R LA TK H++I Y++G Y++FG ET GL PE +L E
Sbjct: 64 NYAEFEA--KNPQG-PRYLATTK-AQRLHTDIHYQQGGYILFGKETKGLSPE-ILARYPE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
T T+R+PM R LNLS SV + VYEA RQ
Sbjct: 119 T----TLRLPM-RADARSLNLSNSVAVVVYEALRQ 148
>gi|311067376|ref|YP_003972299.1| rRNA methylase [Bacillus atrophaeus 1942]
gi|419822644|ref|ZP_14346221.1| putative rRNA methylase [Bacillus atrophaeus C89]
gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942]
gi|388473231|gb|EIM09977.1| putative rRNA methylase [Bacillus atrophaeus C89]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 97/165 (58%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + + Q+G+ L+ TK G H+ Y D + +FG ETSGLP + +
Sbjct: 63 SLEELFEAY--QKGQFFLI--TKFGQKPHTSFDYTDIDEDYFFVFGRETSGLPKDLI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 116 --EKNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51]
gi|423075639|ref|ZP_17064356.1| RNA methyltransferase, TrmH family, group 2 [Desulfitobacterium
hafniense DP7]
gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361853413|gb|EHL05569.1| RNA methyltransferase, TrmH family, group 2 [Desulfitobacterium
hafniense DP7]
Length = 155
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG +AR CAA+ LHLV PLGF++ D LKRAGLDYW + I ++
Sbjct: 4 LNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIHIYE 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+AEF + +G R LA TK H++I Y++G Y++FG ET GL PE +L E
Sbjct: 64 NYAEFEA--KNPQG-PRYLATTK-AQRLHTDIHYQQGGYILFGKETKGLSPE-ILARYPE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
T T+R+PM R LNLS SV + VYEA RQ
Sbjct: 119 T----TLRLPM-RADARSLNLSNSVAVVVYEALRQ 148
>gi|386743547|ref|YP_006216726.1| methyltransferase [Providencia stuartii MRSN 2154]
gi|384480240|gb|AFH94035.1| methyltransferase [Providencia stuartii MRSN 2154]
Length = 167
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHD 62
Query: 140 WAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
+ F D Q R+ A T +G +HS +SYR+ DYL+FG ET GLPP L
Sbjct: 63 YYAFLDSEGLSPDNNQSASGARVFALTTKGKPSHSNVSYRQDDYLMFGPETRGLPPYVLD 122
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 123 NMPIEQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|417229156|ref|ZP_12030914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
5.0959]
gi|419867036|ref|ZP_14389374.1| putative rRNA methylase [Escherichia coli O103:H25 str. CVM9340]
gi|386208491|gb|EII12996.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
5.0959]
gi|388333237|gb|EIK99873.1| putative rRNA methylase [Escherichia coli O103:H25 str. CVM9340]
Length = 157
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS ++Y+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFR-AFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|421844877|ref|ZP_16278033.1| rRNA methylase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|411773740|gb|EKS57268.1| rRNA methylase [Citrobacter freundii ATCC 8090 = MTCC 1658]
Length = 157
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH+V P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIVEPMGFTWDDKRLRRAGLDYHEFTAVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 PDYAS----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|15804150|ref|NP_290189.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
EDL933]
gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
Sakai]
gi|157158942|ref|YP_001465089.1| tRNA/rRNA methyltransferase YibK [Escherichia coli E24377A]
gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4113]
gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4401]
gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4501]
gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4486]
gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4196]
gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4076]
gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC869]
gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC508]
gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
E110019]
gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. EC4024]
gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4206]
gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4045]
gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4042]
gi|209400099|ref|YP_002273088.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
EC4115]
gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11]
gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. TW14588]
gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1]
gi|218697330|ref|YP_002404997.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 55989]
gi|254795564|ref|YP_003080401.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
TW14359]
gi|260846626|ref|YP_003224404.1| rRNA methylase [Escherichia coli O103:H2 str. 12009]
gi|260857996|ref|YP_003231887.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O26:H11 str.
11368]
gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128]
gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000]
gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966]
gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O55:H7 str. CB9615]
gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
107-1]
gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
115-1]
gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
182-1]
gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
78-1]
gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
145-7]
gi|387509014|ref|YP_006161270.1| putative rRNA methylase [Escherichia coli O55:H7 str. RM12579]
gi|387884785|ref|YP_006315087.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
Xuzhou21]
gi|407471602|ref|YP_006781955.1| rRNA methylase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407479746|ref|YP_006776895.1| putative rRNA methylase [Escherichia coli O104:H4 str. 2011C-3493]
gi|410480304|ref|YP_006767850.1| rRNA methylase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|415785746|ref|ZP_11493097.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14]
gi|415800602|ref|ZP_11499335.1| spoU rRNA Methylase family protein [Escherichia coli E128010]
gi|415810824|ref|ZP_11503174.1| spoU rRNA Methylase family protein [Escherichia coli LT-68]
gi|415819663|ref|ZP_11508996.1| spoU rRNA Methylase family protein [Escherichia coli OK1180]
gi|415831246|ref|ZP_11516993.1| spoU rRNA Methylase family protein [Escherichia coli OK1357]
gi|415873279|ref|ZP_11540534.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
79-10]
gi|416315729|ref|ZP_11659542.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. 1044]
gi|416319982|ref|ZP_11662534.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. EC1212]
gi|416330199|ref|ZP_11669236.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. 1125]
gi|416778339|ref|ZP_11875840.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101]
gi|416789637|ref|ZP_11880685.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89]
gi|416801524|ref|ZP_11885625.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687]
gi|416812379|ref|ZP_11890543.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97]
gi|416822653|ref|ZP_11895057.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905]
gi|416833083|ref|ZP_11900155.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61]
gi|417133644|ref|ZP_11978429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
5.0588]
gi|417146658|ref|ZP_11987505.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
1.2264]
gi|417157226|ref|ZP_11994850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
96.0497]
gi|417165453|ref|ZP_11999515.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
99.0741]
gi|417174363|ref|ZP_12004159.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
3.2608]
gi|417185502|ref|ZP_12010903.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
93.0624]
gi|417202296|ref|ZP_12018546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
4.0522]
gi|417219904|ref|ZP_12024133.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
JB1-95]
gi|417243791|ref|ZP_12038189.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
9.0111]
gi|417249839|ref|ZP_12041623.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
4.0967]
gi|417297036|ref|ZP_12084283.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
900105 (10e)]
gi|417583231|ref|ZP_12234030.1| spoU rRNA Methylase family protein [Escherichia coli STEC_B2F1]
gi|417594039|ref|ZP_12244725.1| spoU rRNA Methylase family protein [Escherichia coli 2534-86]
gi|417599026|ref|ZP_12249650.1| spoU rRNA Methylase family protein [Escherichia coli 3030-1]
gi|417604507|ref|ZP_12255070.1| spoU rRNA Methylase family protein [Escherichia coli STEC_94C]
gi|417610302|ref|ZP_12260795.1| spoU rRNA Methylase family protein [Escherichia coli STEC_DG131-3]
gi|417625722|ref|ZP_12276012.1| spoU rRNA Methylase family protein [Escherichia coli STEC_H.1.8]
gi|417669109|ref|ZP_12318647.1| spoU rRNA Methylase family protein [Escherichia coli STEC_O31]
gi|417807287|ref|ZP_12454217.1| putative rRNA methylase [Escherichia coli O104:H4 str. LB226692]
gi|417835031|ref|ZP_12481471.1| putative rRNA methylase [Escherichia coli O104:H4 str. 01-09591]
gi|417866174|ref|ZP_12511216.1| hypothetical protein C22711_3104 [Escherichia coli O104:H4 str.
C227-11]
gi|419047614|ref|ZP_13594545.1| spoU rRNA Methylase family protein [Escherichia coli DEC3A]
gi|419053422|ref|ZP_13600288.1| spoU rRNA Methylase family protein [Escherichia coli DEC3B]
gi|419059371|ref|ZP_13606172.1| spoU rRNA Methylase family protein [Escherichia coli DEC3C]
gi|419064920|ref|ZP_13611640.1| spoU rRNA Methylase family protein [Escherichia coli DEC3D]
gi|419071855|ref|ZP_13617461.1| spoU rRNA Methylase family protein [Escherichia coli DEC3E]
gi|419077747|ref|ZP_13623247.1| spoU rRNA Methylase family protein [Escherichia coli DEC3F]
gi|419082853|ref|ZP_13628296.1| spoU rRNA Methylase family protein [Escherichia coli DEC4A]
gi|419088728|ref|ZP_13634079.1| spoU rRNA Methylase family protein [Escherichia coli DEC4B]
gi|419094657|ref|ZP_13639934.1| spoU rRNA Methylase family protein [Escherichia coli DEC4C]
gi|419100518|ref|ZP_13645706.1| spoU rRNA Methylase family protein [Escherichia coli DEC4D]
gi|419106266|ref|ZP_13651387.1| spoU rRNA Methylase family protein [Escherichia coli DEC4E]
gi|419111648|ref|ZP_13656699.1| spoU rRNA Methylase family protein [Escherichia coli DEC4F]
gi|419113619|ref|ZP_13658652.1| spoU rRNA Methylase family protein [Escherichia coli DEC5A]
gi|419122911|ref|ZP_13667851.1| spoU rRNA Methylase family protein [Escherichia coli DEC5B]
gi|419128387|ref|ZP_13673257.1| spoU rRNA Methylase family protein [Escherichia coli DEC5C]
gi|419133774|ref|ZP_13678598.1| spoU rRNA Methylase family protein [Escherichia coli DEC5D]
gi|419138910|ref|ZP_13683700.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC5E]
gi|419199347|ref|ZP_13742636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC8A]
gi|419205747|ref|ZP_13748905.1| spoU rRNA Methylase family protein [Escherichia coli DEC8B]
gi|419212099|ref|ZP_13755163.1| spoU rRNA Methylase family protein [Escherichia coli DEC8C]
gi|419218031|ref|ZP_13761022.1| spoU rRNA Methylase family protein [Escherichia coli DEC8D]
gi|419223786|ref|ZP_13766696.1| spoU rRNA Methylase family protein [Escherichia coli DEC8E]
gi|419229485|ref|ZP_13772319.1| spoU rRNA Methylase family protein [Escherichia coli DEC9A]
gi|419234978|ref|ZP_13777742.1| spoU rRNA Methylase family protein [Escherichia coli DEC9B]
gi|419240350|ref|ZP_13783052.1| spoU rRNA Methylase family protein [Escherichia coli DEC9C]
gi|419245700|ref|ZP_13788330.1| spoU rRNA Methylase family protein [Escherichia coli DEC9D]
gi|419251712|ref|ZP_13794276.1| spoU rRNA Methylase family protein [Escherichia coli DEC9E]
gi|419257623|ref|ZP_13800118.1| spoU rRNA Methylase family protein [Escherichia coli DEC10A]
gi|419263747|ref|ZP_13806150.1| spoU rRNA Methylase family protein [Escherichia coli DEC10B]
gi|419269706|ref|ZP_13812046.1| spoU rRNA Methylase family protein [Escherichia coli DEC10C]
gi|419275146|ref|ZP_13817431.1| spoU rRNA Methylase family protein [Escherichia coli DEC10D]
gi|419286834|ref|ZP_13828991.1| spoU rRNA Methylase family protein [Escherichia coli DEC10F]
gi|419291827|ref|ZP_13833910.1| spoU rRNA Methylase family protein [Escherichia coli DEC11A]
gi|419297108|ref|ZP_13839143.1| spoU rRNA Methylase family protein [Escherichia coli DEC11B]
gi|419302680|ref|ZP_13844671.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC11C]
gi|419308641|ref|ZP_13850530.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC11D]
gi|419313663|ref|ZP_13855521.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC11E]
gi|419319092|ref|ZP_13860887.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC12A]
gi|419325587|ref|ZP_13867268.1| spoU rRNA Methylase family protein [Escherichia coli DEC12B]
gi|419331299|ref|ZP_13872892.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC12C]
gi|419337020|ref|ZP_13878529.1| spoU rRNA Methylase family protein [Escherichia coli DEC12D]
gi|419342183|ref|ZP_13883636.1| spoU rRNA Methylase family protein [Escherichia coli DEC12E]
gi|419372210|ref|ZP_13913319.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC14A]
gi|419804950|ref|ZP_14330098.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli AI27]
gi|419872308|ref|ZP_14394345.1| putative rRNA methylase [Escherichia coli O103:H2 str. CVM9450]
gi|419879343|ref|ZP_14400781.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9534]
gi|419881034|ref|ZP_14402388.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9545]
gi|419890013|ref|ZP_14410321.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9570]
gi|419894970|ref|ZP_14414843.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9574]
gi|419902030|ref|ZP_14421311.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM9942]
gi|419907388|ref|ZP_14426222.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O26:H11 str. CVM10026]
gi|419924708|ref|ZP_14442583.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 541-15]
gi|419949671|ref|ZP_14465910.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CUMT8]
gi|420087565|ref|ZP_14599524.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9602]
gi|420097328|ref|ZP_14608631.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9634]
gi|420099443|ref|ZP_14610673.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9455]
gi|420107464|ref|ZP_14617801.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9553]
gi|420113817|ref|ZP_14623527.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM10021]
gi|420120462|ref|ZP_14629671.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM10030]
gi|420127014|ref|ZP_14635694.1| rRNA methylase [Escherichia coli O26:H11 str. CVM10224]
gi|420133978|ref|ZP_14642137.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM9952]
gi|420271981|ref|ZP_14774331.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA22]
gi|420277683|ref|ZP_14779962.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA40]
gi|420282630|ref|ZP_14784862.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW06591]
gi|420289123|ref|ZP_14791304.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW10246]
gi|420294799|ref|ZP_14796908.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW11039]
gi|420300652|ref|ZP_14802695.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW09109]
gi|420306508|ref|ZP_14808496.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW10119]
gi|420311572|ref|ZP_14813501.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1738]
gi|420317642|ref|ZP_14819511.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1734]
gi|420393742|ref|ZP_14892986.1| spoU rRNA Methylase family protein [Escherichia coli EPEC C342-62]
gi|421814597|ref|ZP_16250298.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0416]
gi|421820342|ref|ZP_16255827.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
10.0821]
gi|421826486|ref|ZP_16261839.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK920]
gi|421827660|ref|ZP_16262998.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA7]
gi|422352225|ref|ZP_16433016.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
117-3]
gi|422764218|ref|ZP_16817970.1| RNA methyltransferase [Escherichia coli E1167]
gi|422778177|ref|ZP_16831827.1| RNA methyltransferase [Escherichia coli H120]
gi|422961957|ref|ZP_16972693.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli H494]
gi|422989825|ref|ZP_16980597.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. C227-11]
gi|422996720|ref|ZP_16987483.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. C236-11]
gi|423001872|ref|ZP_16992625.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 09-7901]
gi|423005528|ref|ZP_16996273.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 04-8351]
gi|423012034|ref|ZP_17002766.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-3677]
gi|423021261|ref|ZP_17011968.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4404]
gi|423026428|ref|ZP_17017123.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4522]
gi|423032249|ref|ZP_17022935.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4623]
gi|423035120|ref|ZP_17025798.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C1]
gi|423040246|ref|ZP_17030915.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C2]
gi|423046930|ref|ZP_17037589.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C3]
gi|423055469|ref|ZP_17044275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C4]
gi|423057461|ref|ZP_17046260.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C5]
gi|423727655|ref|ZP_17701526.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA31]
gi|424079863|ref|ZP_17816820.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA505]
gi|424086270|ref|ZP_17822751.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA517]
gi|424092677|ref|ZP_17828599.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1996]
gi|424099351|ref|ZP_17834615.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1985]
gi|424105556|ref|ZP_17840290.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1990]
gi|424112203|ref|ZP_17846425.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
93-001]
gi|424118144|ref|ZP_17851972.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA3]
gi|424124334|ref|ZP_17857631.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA5]
gi|424130476|ref|ZP_17863374.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA9]
gi|424136808|ref|ZP_17869246.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA10]
gi|424143361|ref|ZP_17875216.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA14]
gi|424149751|ref|ZP_17881117.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA15]
gi|424155604|ref|ZP_17886528.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA24]
gi|424255870|ref|ZP_17892075.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA25]
gi|424334608|ref|ZP_17897984.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA28]
gi|424452045|ref|ZP_17903703.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA32]
gi|424458230|ref|ZP_17909331.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA33]
gi|424464709|ref|ZP_17915060.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA39]
gi|424471000|ref|ZP_17920801.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA41]
gi|424477498|ref|ZP_17926805.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA42]
gi|424483259|ref|ZP_17932230.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW07945]
gi|424489440|ref|ZP_17937979.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW09098]
gi|424496144|ref|ZP_17943712.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW09195]
gi|424502791|ref|ZP_17949670.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4203]
gi|424509053|ref|ZP_17955422.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4196]
gi|424516415|ref|ZP_17961023.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW14313]
gi|424522594|ref|ZP_17966697.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW14301]
gi|424528468|ref|ZP_17972175.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4421]
gi|424534619|ref|ZP_17977956.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4422]
gi|424540675|ref|ZP_17983609.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4013]
gi|424546822|ref|ZP_17989170.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4402]
gi|424553032|ref|ZP_17994862.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4439]
gi|424559218|ref|ZP_18000615.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4436]
gi|424565553|ref|ZP_18006547.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4437]
gi|424571686|ref|ZP_18012221.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4448]
gi|424577841|ref|ZP_18017881.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1845]
gi|424583656|ref|ZP_18023292.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1863]
gi|424749749|ref|ZP_18177828.1| rRNA methylase [Escherichia coli O26:H11 str. CFSAN001629]
gi|424763514|ref|ZP_18190985.1| rRNA methylase [Escherichia coli O111:H11 str. CFSAN001630]
gi|424773537|ref|ZP_18200597.1| rRNA methylase [Escherichia coli O111:H8 str. CFSAN001632]
gi|425100326|ref|ZP_18503048.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
3.4870]
gi|425106430|ref|ZP_18508736.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
5.2239]
gi|425112435|ref|ZP_18514346.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
6.0172]
gi|425128365|ref|ZP_18529523.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0586]
gi|425134106|ref|ZP_18534947.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.2524]
gi|425140724|ref|ZP_18541095.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
10.0833]
gi|425146394|ref|ZP_18546376.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
10.0869]
gi|425152511|ref|ZP_18552115.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
88.0221]
gi|425158383|ref|ZP_18557638.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA34]
gi|425164729|ref|ZP_18563607.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA506]
gi|425170477|ref|ZP_18568940.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA507]
gi|425176525|ref|ZP_18574635.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA504]
gi|425182583|ref|ZP_18580268.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1999]
gi|425188854|ref|ZP_18586116.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1997]
gi|425195612|ref|ZP_18592372.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
NE1487]
gi|425202088|ref|ZP_18598286.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli NE037]
gi|425208468|ref|ZP_18604255.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK2001]
gi|425214225|ref|ZP_18609616.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA4]
gi|425220351|ref|ZP_18615303.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA23]
gi|425226990|ref|ZP_18621447.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA49]
gi|425233154|ref|ZP_18627183.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA45]
gi|425239077|ref|ZP_18632787.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli TT12B]
gi|425245310|ref|ZP_18638607.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli MA6]
gi|425251506|ref|ZP_18644438.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli 5905]
gi|425257288|ref|ZP_18649787.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
CB7326]
gi|425263555|ref|ZP_18655541.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC96038]
gi|425269543|ref|ZP_18661162.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli 5412]
gi|425290815|ref|ZP_18681627.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli 3006]
gi|425297006|ref|ZP_18687151.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA38]
gi|425313684|ref|ZP_18702851.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1735]
gi|425319664|ref|ZP_18708442.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1736]
gi|425325778|ref|ZP_18714118.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1737]
gi|425332130|ref|ZP_18719953.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1846]
gi|425338306|ref|ZP_18725650.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1847]
gi|425344622|ref|ZP_18731502.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1848]
gi|425350459|ref|ZP_18736914.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1849]
gi|425356731|ref|ZP_18742787.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1850]
gi|425362690|ref|ZP_18748326.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1856]
gi|425368925|ref|ZP_18754023.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1862]
gi|425375224|ref|ZP_18759854.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1864]
gi|425381927|ref|ZP_18765911.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1865]
gi|425388112|ref|ZP_18771661.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1866]
gi|425394805|ref|ZP_18777903.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1868]
gi|425400900|ref|ZP_18783596.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1869]
gi|425406995|ref|ZP_18789206.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1870]
gi|425413379|ref|ZP_18795131.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli NE098]
gi|425419690|ref|ZP_18800950.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK523]
gi|425430965|ref|ZP_18811564.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
0.1304]
gi|428949402|ref|ZP_19021664.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
88.1467]
gi|428955471|ref|ZP_19027253.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
88.1042]
gi|428961469|ref|ZP_19032750.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
89.0511]
gi|428968079|ref|ZP_19038780.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
90.0091]
gi|428973844|ref|ZP_19044156.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
90.0039]
gi|428980287|ref|ZP_19050091.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
90.2281]
gi|428986022|ref|ZP_19055403.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
93.0055]
gi|428992186|ref|ZP_19061164.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
93.0056]
gi|428998078|ref|ZP_19066660.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
94.0618]
gi|429004428|ref|ZP_19072505.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.0183]
gi|429010435|ref|ZP_19077870.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.1288]
gi|429016965|ref|ZP_19083836.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.0943]
gi|429022848|ref|ZP_19089354.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0428]
gi|429028877|ref|ZP_19094854.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0427]
gi|429035035|ref|ZP_19100547.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0939]
gi|429046992|ref|ZP_19111694.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0107]
gi|429052338|ref|ZP_19116897.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.0003]
gi|429057853|ref|ZP_19122114.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.1742]
gi|429063392|ref|ZP_19127366.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.0007]
gi|429069583|ref|ZP_19133024.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0672]
gi|429075389|ref|ZP_19138634.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0678]
gi|429080593|ref|ZP_19143721.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0713]
gi|429721296|ref|ZP_19256215.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-9450]
gi|429773194|ref|ZP_19305210.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02030]
gi|429778557|ref|ZP_19310525.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02033-1]
gi|429782393|ref|ZP_19314319.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02092]
gi|429787809|ref|ZP_19319698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02093]
gi|429793606|ref|ZP_19325450.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02281]
gi|429800187|ref|ZP_19331977.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02318]
gi|429803798|ref|ZP_19335556.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02913]
gi|429808445|ref|ZP_19340162.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-03439]
gi|429814144|ref|ZP_19345817.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-04080]
gi|429819348|ref|ZP_19350979.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-03943]
gi|429828784|ref|ZP_19359786.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0109]
gi|429835223|ref|ZP_19365497.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.0010]
gi|429905698|ref|ZP_19371674.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-9990]
gi|429909836|ref|ZP_19375798.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-9941]
gi|429915702|ref|ZP_19381648.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4984]
gi|429920750|ref|ZP_19386677.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-5604]
gi|429926558|ref|ZP_19392469.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4986]
gi|429930491|ref|ZP_19396390.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4987]
gi|429937027|ref|ZP_19402912.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4988]
gi|429942711|ref|ZP_19408583.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-5603]
gi|429945391|ref|ZP_19411251.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-6006]
gi|429952949|ref|ZP_19418794.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec12-0465]
gi|429956306|ref|ZP_19422136.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec12-0466]
gi|432487380|ref|ZP_19729286.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE212]
gi|432528454|ref|ZP_19765526.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE233]
gi|432672713|ref|ZP_19908231.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE119]
gi|432676733|ref|ZP_19912177.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE142]
gi|432752070|ref|ZP_19986646.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE29]
gi|432767002|ref|ZP_20001415.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE48]
gi|432807848|ref|ZP_20041761.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE91]
gi|432931109|ref|ZP_20131381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE184]
gi|432965373|ref|ZP_20154296.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE203]
gi|433094011|ref|ZP_20280259.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE138]
gi|433175514|ref|ZP_20360018.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE232]
gi|433195666|ref|ZP_20379635.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE90]
gi|444927287|ref|ZP_21246550.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
09BKT078844]
gi|444932874|ref|ZP_21251889.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0814]
gi|444938354|ref|ZP_21257097.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0815]
gi|444943947|ref|ZP_21262439.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0816]
gi|444949414|ref|ZP_21267709.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0839]
gi|444955107|ref|ZP_21273177.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0848]
gi|444960496|ref|ZP_21278323.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1753]
gi|444965711|ref|ZP_21283277.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1775]
gi|444971703|ref|ZP_21289046.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1793]
gi|444977003|ref|ZP_21294091.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1805]
gi|444982375|ref|ZP_21299275.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli ATCC
700728]
gi|444987789|ref|ZP_21304559.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA11]
gi|444993097|ref|ZP_21309731.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA19]
gi|444998330|ref|ZP_21314822.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA13]
gi|445003867|ref|ZP_21320248.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA2]
gi|445009249|ref|ZP_21325480.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA47]
gi|445014379|ref|ZP_21330477.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA48]
gi|445020290|ref|ZP_21336249.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA8]
gi|445031121|ref|ZP_21346782.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1781]
gi|445036514|ref|ZP_21352035.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1762]
gi|445042219|ref|ZP_21357583.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA35]
gi|445047411|ref|ZP_21362652.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
3.4880]
gi|445053000|ref|ZP_21368015.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.0083]
gi|445061030|ref|ZP_21373540.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0670]
gi|450225321|ref|ZP_21897319.1| rRNA methylase [Escherichia coli O08]
gi|452968909|ref|ZP_21967136.1| rRNA methylase [Escherichia coli O157:H7 str. EC4009]
gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
E24377A]
gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4196]
gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4113]
gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4076]
gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4401]
gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4486]
gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4501]
gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC869]
gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC508]
gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
E110019]
gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4206]
gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4045]
gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4042]
gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. EC4115]
gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli]
gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11]
gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O157:H7 str. TW14588]
gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989]
gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1]
gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359]
gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368]
gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009]
gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128]
gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O55:H7 str. CB9615]
gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
115-1]
gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
182-1]
gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
107-1]
gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
78-1]
gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
145-7]
gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. EC1212]
gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101]
gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89]
gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687]
gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905]
gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61]
gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14]
gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010]
gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68]
gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli OK1180]
gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli OK1357]
gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120]
gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
117-3]
gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167]
gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. 1044]
gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
str. 1125]
gi|340732260|gb|EGR61398.1| putative rRNA methylase [Escherichia coli O104:H4 str. 01-09591]
gi|340738015|gb|EGR72266.1| putative rRNA methylase [Escherichia coli O104:H4 str. LB226692]
gi|341919463|gb|EGT69074.1| hypothetical protein C22711_3104 [Escherichia coli O104:H4 str.
C227-11]
gi|342930890|gb|EGU99612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
79-10]
gi|345331146|gb|EGW63606.1| spoU rRNA Methylase family protein [Escherichia coli 2534-86]
gi|345334293|gb|EGW66737.1| spoU rRNA Methylase family protein [Escherichia coli STEC_B2F1]
gi|345347383|gb|EGW79693.1| spoU rRNA Methylase family protein [Escherichia coli STEC_94C]
gi|345348522|gb|EGW80815.1| spoU rRNA Methylase family protein [Escherichia coli 3030-1]
gi|345354309|gb|EGW86534.1| spoU rRNA Methylase family protein [Escherichia coli STEC_DG131-3]
gi|345372970|gb|EGX04932.1| spoU rRNA Methylase family protein [Escherichia coli STEC_H.1.8]
gi|354858960|gb|EHF19409.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. C236-11]
gi|354862847|gb|EHF23284.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. C227-11]
gi|354863414|gb|EHF23847.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 04-8351]
gi|354871451|gb|EHF31849.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 09-7901]
gi|354877986|gb|EHF38344.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-3677]
gi|354886002|gb|EHF46293.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4404]
gi|354890209|gb|EHF50452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4522]
gi|354893845|gb|EHF54043.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4623]
gi|354905152|gb|EHF65236.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C1]
gi|354908818|gb|EHF68860.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C2]
gi|354910701|gb|EHF70718.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C3]
gi|354913402|gb|EHF73394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C4]
gi|354920803|gb|EHF80729.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-4632 C5]
gi|371592699|gb|EHN81596.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli H494]
gi|374361008|gb|AEZ42715.1| putative rRNA methylase [Escherichia coli O55:H7 str. RM12579]
gi|377889564|gb|EHU54024.1| spoU rRNA Methylase family protein [Escherichia coli DEC3A]
gi|377889812|gb|EHU54271.1| spoU rRNA Methylase family protein [Escherichia coli DEC3B]
gi|377903300|gb|EHU67598.1| spoU rRNA Methylase family protein [Escherichia coli DEC3C]
gi|377907418|gb|EHU71654.1| spoU rRNA Methylase family protein [Escherichia coli DEC3D]
gi|377908058|gb|EHU72279.1| spoU rRNA Methylase family protein [Escherichia coli DEC3E]
gi|377917795|gb|EHU81851.1| spoU rRNA Methylase family protein [Escherichia coli DEC3F]
gi|377923499|gb|EHU87463.1| spoU rRNA Methylase family protein [Escherichia coli DEC4A]
gi|377927790|gb|EHU91705.1| spoU rRNA Methylase family protein [Escherichia coli DEC4B]
gi|377937925|gb|EHV01696.1| spoU rRNA Methylase family protein [Escherichia coli DEC4D]
gi|377938860|gb|EHV02622.1| spoU rRNA Methylase family protein [Escherichia coli DEC4C]
gi|377944141|gb|EHV07846.1| spoU rRNA Methylase family protein [Escherichia coli DEC4E]
gi|377954671|gb|EHV18230.1| spoU rRNA Methylase family protein [Escherichia coli DEC4F]
gi|377962216|gb|EHV25677.1| spoU rRNA Methylase family protein [Escherichia coli DEC5B]
gi|377965169|gb|EHV28594.1| spoU rRNA Methylase family protein [Escherichia coli DEC5A]
gi|377970015|gb|EHV33387.1| spoU rRNA Methylase family protein [Escherichia coli DEC5C]
gi|377970478|gb|EHV33837.1| spoU rRNA Methylase family protein [Escherichia coli DEC5D]
gi|377981034|gb|EHV44294.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC5E]
gi|378043415|gb|EHW05850.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC8A]
gi|378043968|gb|EHW06392.1| spoU rRNA Methylase family protein [Escherichia coli DEC8B]
gi|378049121|gb|EHW11468.1| spoU rRNA Methylase family protein [Escherichia coli DEC8C]
gi|378058252|gb|EHW20470.1| spoU rRNA Methylase family protein [Escherichia coli DEC8D]
gi|378061487|gb|EHW23671.1| spoU rRNA Methylase family protein [Escherichia coli DEC8E]
gi|378068366|gb|EHW30469.1| spoU rRNA Methylase family protein [Escherichia coli DEC9A]
gi|378073668|gb|EHW35714.1| spoU rRNA Methylase family protein [Escherichia coli DEC9B]
gi|378079425|gb|EHW41402.1| spoU rRNA Methylase family protein [Escherichia coli DEC9C]
gi|378086837|gb|EHW48707.1| spoU rRNA Methylase family protein [Escherichia coli DEC9D]
gi|378089395|gb|EHW51238.1| spoU rRNA Methylase family protein [Escherichia coli DEC9E]
gi|378096130|gb|EHW57906.1| spoU rRNA Methylase family protein [Escherichia coli DEC10A]
gi|378101682|gb|EHW63367.1| spoU rRNA Methylase family protein [Escherichia coli DEC10B]
gi|378106399|gb|EHW68028.1| spoU rRNA Methylase family protein [Escherichia coli DEC10C]
gi|378112758|gb|EHW74332.1| spoU rRNA Methylase family protein [Escherichia coli DEC10D]
gi|378124511|gb|EHW85918.1| spoU rRNA Methylase family protein [Escherichia coli DEC10F]
gi|378125270|gb|EHW86671.1| spoU rRNA Methylase family protein [Escherichia coli DEC11A]
gi|378138435|gb|EHW99689.1| spoU rRNA Methylase family protein [Escherichia coli DEC11B]
gi|378144412|gb|EHX05584.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC11D]
gi|378146521|gb|EHX07672.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC11C]
gi|378155582|gb|EHX16641.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC11E]
gi|378161062|gb|EHX22047.1| spoU rRNA Methylase family protein [Escherichia coli DEC12B]
gi|378165228|gb|EHX26164.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC12A]
gi|378166063|gb|EHX26991.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC12C]
gi|378178941|gb|EHX39686.1| spoU rRNA Methylase family protein [Escherichia coli DEC12D]
gi|378183096|gb|EHX43742.1| spoU rRNA Methylase family protein [Escherichia coli DEC12E]
gi|378213837|gb|EHX74149.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli DEC14A]
gi|384472033|gb|EIE56096.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli AI27]
gi|386151498|gb|EIH02787.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
5.0588]
gi|386162598|gb|EIH24394.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
1.2264]
gi|386165976|gb|EIH32496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
96.0497]
gi|386172433|gb|EIH44463.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
99.0741]
gi|386177055|gb|EIH54534.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
3.2608]
gi|386182802|gb|EIH65558.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
93.0624]
gi|386187183|gb|EIH76006.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
4.0522]
gi|386192815|gb|EIH87129.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
JB1-95]
gi|386211343|gb|EII21808.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
9.0111]
gi|386220160|gb|EII36624.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
4.0967]
gi|386260480|gb|EIJ15954.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
900105 (10e)]
gi|386798243|gb|AFJ31277.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
Xuzhou21]
gi|388332229|gb|EIK98911.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9534]
gi|388334702|gb|EIL01284.1| putative rRNA methylase [Escherichia coli O103:H2 str. CVM9450]
gi|388355576|gb|EIL20399.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9570]
gi|388362609|gb|EIL26608.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9574]
gi|388366619|gb|EIL30343.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9545]
gi|388374879|gb|EIL37969.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM9942]
gi|388377262|gb|EIL40088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
O26:H11 str. CVM10026]
gi|388388967|gb|EIL50511.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 541-15]
gi|388418772|gb|EIL78554.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CUMT8]
gi|390638043|gb|EIN17564.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1996]
gi|390639074|gb|EIN18561.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA505]
gi|390639453|gb|EIN18927.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA517]
gi|390656947|gb|EIN34783.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1985]
gi|390657246|gb|EIN35070.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
93-001]
gi|390660493|gb|EIN38195.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1990]
gi|390674589|gb|EIN50765.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA3]
gi|390678080|gb|EIN54075.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA5]
gi|390681640|gb|EIN57432.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA9]
gi|390692878|gb|EIN67533.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA10]
gi|390697158|gb|EIN71588.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA14]
gi|390698061|gb|EIN72452.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA15]
gi|390711656|gb|EIN84617.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA22]
gi|390718828|gb|EIN91570.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA25]
gi|390719788|gb|EIN92505.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA24]
gi|390724839|gb|EIN97374.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA28]
gi|390738032|gb|EIO09263.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA31]
gi|390738817|gb|EIO10020.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA32]
gi|390742017|gb|EIO13037.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA33]
gi|390755880|gb|EIO25401.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA40]
gi|390761045|gb|EIO30352.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA39]
gi|390763696|gb|EIO32925.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA41]
gi|390765682|gb|EIO34839.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA42]
gi|390779421|gb|EIO47135.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW06591]
gi|390786478|gb|EIO53990.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW07945]
gi|390787097|gb|EIO54589.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW10246]
gi|390793395|gb|EIO60732.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW11039]
gi|390801261|gb|EIO68325.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW09098]
gi|390805023|gb|EIO71971.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW09109]
gi|390814223|gb|EIO80803.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW10119]
gi|390823008|gb|EIO89081.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4203]
gi|390823804|gb|EIO89830.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW09195]
gi|390827982|gb|EIO93679.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4196]
gi|390841702|gb|EIP05603.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW14313]
gi|390843399|gb|EIP07196.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
TW14301]
gi|390848186|gb|EIP11666.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4421]
gi|390858560|gb|EIP20939.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4422]
gi|390862995|gb|EIP25152.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4013]
gi|390867224|gb|EIP29065.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4402]
gi|390875515|gb|EIP36528.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4439]
gi|390881094|gb|EIP41729.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4436]
gi|390890778|gb|EIP50432.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4437]
gi|390892470|gb|EIP52056.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC4448]
gi|390898929|gb|EIP58190.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1738]
gi|390905956|gb|EIP64870.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1734]
gi|390916242|gb|EIP74715.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1863]
gi|390916772|gb|EIP75214.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1845]
gi|391309821|gb|EIQ67484.1| spoU rRNA Methylase family protein [Escherichia coli EPEC C342-62]
gi|394384860|gb|EJE62413.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9634]
gi|394390258|gb|EJE67277.1| rRNA methylase [Escherichia coli O26:H11 str. CVM10224]
gi|394392878|gb|EJE69612.1| putative rRNA methylase [Escherichia coli O111:H8 str. CVM9602]
gi|394410957|gb|EJE85274.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM10021]
gi|394412755|gb|EJE86870.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9553]
gi|394423046|gb|EJE96333.1| putative rRNA methylase [Escherichia coli O111:H11 str. CVM9455]
gi|394423510|gb|EJE96756.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM9952]
gi|394429225|gb|EJF01664.1| putative rRNA methylase [Escherichia coli O26:H11 str. CVM10030]
gi|397783202|gb|EJK94062.1| spoU rRNA Methylase family protein [Escherichia coli STEC_O31]
gi|406775466|gb|AFS54890.1| putative rRNA methylase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407052043|gb|AFS72094.1| putative rRNA methylase [Escherichia coli O104:H4 str. 2011C-3493]
gi|407067637|gb|AFS88684.1| putative rRNA methylase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408064870|gb|EKG99351.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK920]
gi|408066586|gb|EKH01036.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA34]
gi|408074248|gb|EKH08533.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA7]
gi|408076706|gb|EKH10927.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA506]
gi|408080530|gb|EKH14595.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA507]
gi|408088747|gb|EKH22094.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FDA504]
gi|408094830|gb|EKH27830.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1999]
gi|408101264|gb|EKH33724.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK1997]
gi|408106042|gb|EKH38163.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
NE1487]
gi|408112773|gb|EKH44390.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli NE037]
gi|408119057|gb|EKH50151.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK2001]
gi|408125299|gb|EKH55910.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA4]
gi|408135014|gb|EKH64819.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA23]
gi|408137280|gb|EKH66985.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA49]
gi|408144115|gb|EKH73363.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA45]
gi|408152437|gb|EKH80870.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli TT12B]
gi|408157527|gb|EKH85671.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli MA6]
gi|408161550|gb|EKH89497.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli 5905]
gi|408170811|gb|EKH97963.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
CB7326]
gi|408177643|gb|EKI04414.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC96038]
gi|408180835|gb|EKI07431.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli 5412]
gi|408209236|gb|EKI33837.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli 3006]
gi|408213949|gb|EKI38417.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA38]
gi|408224250|gb|EKI47971.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1735]
gi|408235620|gb|EKI58559.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1736]
gi|408239067|gb|EKI61829.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1737]
gi|408244025|gb|EKI66495.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1846]
gi|408252624|gb|EKI74256.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1847]
gi|408256673|gb|EKI78040.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1848]
gi|408263137|gb|EKI84009.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1849]
gi|408271541|gb|EKI91664.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1850]
gi|408274478|gb|EKI94478.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1856]
gi|408282998|gb|EKJ02234.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1862]
gi|408288907|gb|EKJ07698.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1864]
gi|408293315|gb|EKJ11759.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1865]
gi|408304226|gb|EKJ21656.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1868]
gi|408305150|gb|EKJ22556.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1866]
gi|408316346|gb|EKJ32624.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1869]
gi|408321664|gb|EKJ37679.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
EC1870]
gi|408324078|gb|EKJ40030.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli NE098]
gi|408334318|gb|EKJ49208.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
FRIK523]
gi|408342934|gb|EKJ57347.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
0.1304]
gi|408545574|gb|EKK23002.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
5.2239]
gi|408546040|gb|EKK23459.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
3.4870]
gi|408546841|gb|EKK24245.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
6.0172]
gi|408564266|gb|EKK40377.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0586]
gi|408576046|gb|EKK51666.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
10.0833]
gi|408578957|gb|EKK54442.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.2524]
gi|408588865|gb|EKK63418.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
10.0869]
gi|408594026|gb|EKK68321.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
88.0221]
gi|408599208|gb|EKK73126.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
8.0416]
gi|408609517|gb|EKK82895.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
10.0821]
gi|421936306|gb|EKT93973.1| rRNA methylase [Escherichia coli O111:H8 str. CFSAN001632]
gi|421939871|gb|EKT97374.1| rRNA methylase [Escherichia coli O111:H11 str. CFSAN001630]
gi|421941499|gb|EKT98892.1| rRNA methylase [Escherichia coli O26:H11 str. CFSAN001629]
gi|427201814|gb|EKV72181.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
88.1042]
gi|427202394|gb|EKV72724.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
89.0511]
gi|427205330|gb|EKV75580.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
88.1467]
gi|427218263|gb|EKV87278.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
90.0091]
gi|427221619|gb|EKV90443.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
90.2281]
gi|427225040|gb|EKV93705.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
90.0039]
gi|427238782|gb|EKW06286.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
93.0056]
gi|427238969|gb|EKW06467.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
93.0055]
gi|427243205|gb|EKW10590.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
94.0618]
gi|427256788|gb|EKW22937.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.0183]
gi|427258281|gb|EKW24374.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.0943]
gi|427260624|gb|EKW26598.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.1288]
gi|427273552|gb|EKW38233.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0428]
gi|427276027|gb|EKW40609.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0427]
gi|427280917|gb|EKW45257.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0939]
gi|427296117|gb|EKW59180.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0107]
gi|427298243|gb|EKW61259.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.0003]
gi|427308574|gb|EKW70944.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.1742]
gi|427311679|gb|EKW73863.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.0007]
gi|427316471|gb|EKW78415.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0672]
gi|427325357|gb|EKW86799.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0678]
gi|427326857|gb|EKW88262.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0713]
gi|429251356|gb|EKY35962.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0109]
gi|429252311|gb|EKY36850.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
97.0010]
gi|429356076|gb|EKY92758.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02030]
gi|429357014|gb|EKY93689.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02033-1]
gi|429358705|gb|EKY95373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02092]
gi|429371626|gb|EKZ08179.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02093]
gi|429373705|gb|EKZ10248.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02281]
gi|429376117|gb|EKZ12647.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02318]
gi|429388984|gb|EKZ25409.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-02913]
gi|429390541|gb|EKZ26952.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-03439]
gi|429390992|gb|EKZ27398.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-03943]
gi|429401421|gb|EKZ37723.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. 11-04080]
gi|429402344|gb|EKZ38635.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-9990]
gi|429406284|gb|EKZ42544.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-9450]
gi|429413970|gb|EKZ50149.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4984]
gi|429416428|gb|EKZ52584.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4986]
gi|429424186|gb|EKZ60289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4987]
gi|429428567|gb|EKZ64643.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-4988]
gi|429432621|gb|EKZ68659.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-5603]
gi|429439690|gb|EKZ75671.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-5604]
gi|429443854|gb|EKZ79801.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec12-0465]
gi|429448605|gb|EKZ84515.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-6006]
gi|429455078|gb|EKZ90936.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec12-0466]
gi|429458701|gb|EKZ94523.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli O104:H4 str. Ec11-9941]
gi|431013212|gb|ELD26945.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE212]
gi|431060031|gb|ELD69369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE233]
gi|431207414|gb|ELF05670.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE119]
gi|431210641|gb|ELF08695.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE142]
gi|431293000|gb|ELF83380.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE29]
gi|431307002|gb|ELF95303.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE48]
gi|431352705|gb|ELG39470.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE91]
gi|431460544|gb|ELH40832.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE184]
gi|431476865|gb|ELH56652.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE203]
gi|431606735|gb|ELI76107.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE138]
gi|431688196|gb|ELJ53735.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE232]
gi|431713114|gb|ELJ77371.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE90]
gi|444535470|gb|ELV15549.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0814]
gi|444536919|gb|ELV16893.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
09BKT078844]
gi|444545717|gb|ELV24547.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0815]
gi|444555059|gb|ELV32548.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0839]
gi|444555084|gb|ELV32572.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0816]
gi|444560202|gb|ELV37380.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0848]
gi|444569621|gb|ELV46197.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1753]
gi|444573327|gb|ELV49706.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1775]
gi|444576616|gb|ELV52774.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1793]
gi|444589811|gb|ELV65133.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1805]
gi|444589844|gb|ELV65165.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli ATCC
700728]
gi|444589915|gb|ELV65234.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA11]
gi|444603870|gb|ELV78561.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA13]
gi|444604031|gb|ELV78714.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA19]
gi|444612851|gb|ELV87131.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA2]
gi|444620298|gb|ELV94306.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA47]
gi|444620946|gb|ELV94935.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA48]
gi|444627370|gb|ELW01134.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA8]
gi|444638260|gb|ELW11607.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1781]
gi|444642620|gb|ELW15802.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.1762]
gi|444651995|gb|ELW24774.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli PA35]
gi|444657367|gb|ELW29847.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
3.4880]
gi|444660390|gb|ELW32760.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
95.0083]
gi|444667204|gb|ELW39243.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
99.0670]
gi|449313868|gb|EMD04054.1| rRNA methylase [Escherichia coli O08]
Length = 157
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS ++Y+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFR-AFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
Length = 156
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF ++D +KRAGLDYW Y +K+H
Sbjct: 1 MFNVVLVHPEIPPNTGNVIRLCANTGASLHLIRPLGFSLEDKHMKRAGLDYWEYATLKIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + +R+ A T +G++ S++ + GD+ IFG+E SGLP D S
Sbjct: 61 DNWEAF--LAAEHPNPERMFAMTTKGSTVFSQLKFIPGDWFIFGAEGSGLPD----DIRS 114
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IR+PM R LNLS +V + V+EA RQ NY
Sbjct: 115 AFSAQNRIRLPMRPDN-RSLNLSNAVAVTVFEAWRQQNY 152
>gi|429088683|ref|ZP_19151415.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter universalis
NCTC 9529]
gi|426508486|emb|CCK16527.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter universalis
NCTC 9529]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 ADYAA----FLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDVLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 PE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|418599043|ref|ZP_13162540.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21343]
gi|374398231|gb|EHQ69417.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21343]
Length = 156
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FEATNGEYYLL--TKFGEKTYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E ++R LNLS + + +YEA RQ ++ L
Sbjct: 114 KEKYQDTALRIPMSE-HIRSLNLSNTAALLIYEALRQQDFPGL 155
>gi|423142180|ref|ZP_17129818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379050109|gb|EHY68002.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS ++Y+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FIAAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
SmR1]
Length = 160
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 97/163 (59%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHLV PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
Query: 138 STWAEFRDYFRQQE--GEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
W +F + RQ+ E R+ A T G++ + +++R GD +FGSET GL PE
Sbjct: 61 QDWDQFLAHRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPE----- 115
Query: 196 TSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E+F IR+PM R +NLS +V + VYEA RQ YE
Sbjct: 116 RRESFPTSQRIRLPM-RPGNRSINLSNTVAVVVYEAWRQNGYE 157
>gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|418329447|ref|ZP_12940513.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418613738|ref|ZP_13176738.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU118]
gi|418630804|ref|ZP_13193279.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU128]
gi|418633976|ref|ZP_13196376.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU129]
gi|420174433|ref|ZP_14680883.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM061]
gi|420177330|ref|ZP_14683677.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM057]
gi|420180821|ref|ZP_14687031.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM053]
gi|420190412|ref|ZP_14696355.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM037]
gi|420192740|ref|ZP_14698598.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM023]
gi|420199871|ref|ZP_14705540.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM031]
gi|420204715|ref|ZP_14710273.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM015]
gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|365230375|gb|EHM71475.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374822729|gb|EHR86744.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU118]
gi|374836705|gb|EHS00286.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU128]
gi|374838161|gb|EHS01713.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU129]
gi|394244938|gb|EJD90265.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM061]
gi|394248644|gb|EJD93878.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM053]
gi|394249764|gb|EJD94975.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM057]
gi|394258857|gb|EJE03731.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM037]
gi|394260913|gb|EJE05717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM023]
gi|394271093|gb|EJE15592.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM031]
gi|394273725|gb|EJE18156.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM015]
Length = 156
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF +D LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
EF F EG LL TK G T+S+ ++ + Y IFG ET+GLP D
Sbjct: 64 IEEF---FANTEGHYYLL--TKFGKQTYSDFNFSNTNEDYYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ +Y L
Sbjct: 114 KEKYAKTALRIPMSDN-IRSLNLSNTAALLIYEALRQQDYPNL 155
>gi|429102391|ref|ZP_19164365.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter turicensis
564]
gi|426289040|emb|CCJ90478.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter turicensis
564]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRH 60
Query: 138 STWAEFRDY--FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
RDY F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 ------RDYAAFLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDAL 114
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 115 PPEQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|421264269|ref|ZP_15715267.1| hypothetical protein KCU_07930 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688475|gb|EJS84061.1| hypothetical protein KCU_07930 [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 158
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N G I R CA + LHL+ PLGF DD KL+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNAGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F E KRL A T +G+ HS + + GDYL+FG E+ G+ P ++LD
Sbjct: 61 KTF----EAFLATEQPKRLFALTTKGSPAHSHVQFELGDYLMFGPESRGI-PMSILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM E R +NLS SV +AVYEA RQL Y
Sbjct: 116 MS---QKIRIPMTEN-SRSMNLSNSVAVAVYEAWRQLGY 150
>gi|417353084|ref|ZP_12130112.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353564663|gb|EHC30683.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 HDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PVSILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|386282715|ref|ZP_10060362.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
sp. 4_1_40B]
gi|386120338|gb|EIG68968.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
sp. 4_1_40B]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|415884363|ref|ZP_11546291.1| putative rRNA methylase [Bacillus methanolicus MGA3]
gi|387590032|gb|EIJ82351.1| putative rRNA methylase [Bacillus methanolicus MGA3]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 95/165 (57%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVIYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF F + +G + TK G H+ Y D Y IFG ET+GLP + +
Sbjct: 63 SLEEF---FEKNKGGE-FFYLTKFGIQPHTTFDYSSMDKDYYFIFGRETTGLPKDLI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E ++RIPM E VR LNLS + I +YEA RQ NY LK
Sbjct: 116 --EQNKDRSLRIPMNEN-VRSLNLSNTAAILIYEALRQQNYPGLK 157
>gi|444354150|ref|YP_007390294.1| tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|443904980|emb|CCG32754.1| tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L +
Sbjct: 61 ADYAAFVASAKPQ----RLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|398309956|ref|ZP_10513430.1| rRNA methylase [Bacillus mojavensis RO-H-1]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + +++ + TK G H+ Y + + +FG ETSGLP E + +
Sbjct: 63 SLEELFEAYKKGQ----FFFITKFGQKPHTSFDYTDSNEDYFFVFGRETSGLPKELIQNN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 119 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase SpoU [Alkaliphilus metalliredigens
QYMF]
gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
QYMF]
Length = 165
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 11/164 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL+ P+IP NTG IARTC A+ LHL+GP+GF +D+ ++KRAGLDYW + + +
Sbjct: 11 LHVVLLEPEIPQNTGNIARTCVATGATLHLIGPMGFSIDEKQVKRAGLDYWELLDLNYYD 70
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD-YLIFGSETSGLPPEALLDCTS 197
+A+ F ++ ++ T + HSE++Y + D Y++FG ET+G+P E L D
Sbjct: 71 RYAD----FLEKNKHPKVYCATTKAQKNHSEVAYPQDDTYIMFGKETAGIPKEILKD-HE 125
Query: 198 ETFGGGTIRIPMVET-YVRCLNLSVSVGIAVYEAARQLNYEQLK 240
ET IRIPMV+ R LNLS +V I VYE RQ Y ++
Sbjct: 126 ET----CIRIPMVDIERARSLNLSNAVSIVVYEVLRQWGYSNMR 165
>gi|296133845|ref|YP_003641092.1| TrmH family RNA methyltransferase [Thermincola potens JR]
gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR]
Length = 152
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 10/155 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTCA + LHLV PLGF VDD LKRAGLDYW + I+ +
Sbjct: 1 MNIVLVEPEIPANTGNIARTCAVTGSVLHLVKPLGFSVDDKHLKRAGLDYWHLLDIRYYE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + + R T +G ++++ Y D+L+FG ET+GLP E LL+ +E
Sbjct: 61 NFQELKAKYPAS----RFYYVTTKGKKFYTDVPYSADDFLVFGKETAGLPKE-LLEENAE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
IRIPM+ VR LNLS SV I +YEA RQ
Sbjct: 116 F----CIRIPMINN-VRSLNLSNSVAIVLYEAWRQ 145
>gi|417895656|ref|ZP_12539636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21235]
gi|341841472|gb|EGS82931.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21235]
Length = 156
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FEATNGEYYLL--TKFGKRTYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E ++R LNLS + + +YEA RQ ++ L
Sbjct: 114 KEKYQDTALRIPMSE-HIRSLNLSNTAALLIYEALRQQDFPGL 155
>gi|340616775|ref|YP_004735228.1| tRNA/rRNA 2O-methyltransferase YibK [Zobellia galactanivorans]
gi|339731572|emb|CAZ94837.1| tRNA/rRNA 2O-methyltransferase YibK [Zobellia galactanivorans]
Length = 149
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 9/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLV P+IP NTG I R AS LHL+ P GF++DD +LKRAGLDYWP++ + ++ +
Sbjct: 4 NIVLVEPEIPNNTGNIGRLALASGAKLHLIKPFGFELDDKRLKRAGLDYWPHLDLYLYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D F +Q G+K L+ F+ + H I Y +L+FG E+ GLPP +
Sbjct: 64 ----LDDFLKQHGDKNLVLFSSHASKNHWSIPYEDEQFLVFGKESVGLPPSLVSRYEDHL 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ +IP+ +VR LNL+ +VGIAVYE + +
Sbjct: 120 Y-----KIPLYSEHVRSLNLANAVGIAVYEGLKHI 149
>gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
17241]
gi|167666779|gb|EDS10909.1| putative RNA methyltransferase, TrmH family, group 2 [Anaerotruncus
colihominis DSM 17241]
Length = 171
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 17/164 (10%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL+ PQIP NTG IARTCAA+ LHLVGP+GF++ D KLKRAGLDYW + I +
Sbjct: 4 LNIVLIEPQIPQNTGNIARTCAATGARLHLVGPMGFEITDAKLKRAGLDYWHLLDI---T 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL---DC 195
T+ + +F Q G FT + T++E Y G Y++FG E +GLP E L DC
Sbjct: 61 TYPDSASFFAQNRGP--FYFFTTKARRTYTEPQYPDGAYIVFGREDAGLPEELLFQNPDC 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+R+PM+ R LNLS +V +AVYE RQ ++ +L
Sbjct: 119 --------CVRLPMIAG-ARSLNLSNTVAVAVYEVLRQWDFPKL 153
>gi|375257962|ref|YP_005017132.1| putative rRNA methylase [Klebsiella oxytoca KCTC 1686]
gi|397660589|ref|YP_006501291.1| tRNA (cytosine34-2'-O-)-methyltransferase [Klebsiella oxytoca E718]
gi|365907440|gb|AEX02893.1| putative rRNA methylase [Klebsiella oxytoca KCTC 1686]
gi|394348594|gb|AFN34715.1| tRNA (cytosine34-2'-O-)-methyltransferase [Klebsiella oxytoca E718]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L +
Sbjct: 61 GDYAAFIESAKPQ----RLFALTTKGTPAHSAVSYQDGDFLLFGPETRGLPGSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310318|ref|YP_006006374.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|418242920|ref|ZP_12869419.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420261015|ref|ZP_14763675.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|433551656|ref|ZP_20507697.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Yersinia enterocolitica
IP 10393]
gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia
enterocolitica W22703]
gi|351777616|gb|EHB19818.1| putative methyltransferase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511519|gb|EKA25394.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|431787325|emb|CCO70737.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Yersinia enterocolitica
IP 10393]
Length = 167
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60
Query: 138 STWAEFRDYFR----QQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F D Q G RL A T +GT HS ++Y+ DYL+FG ET GLP
Sbjct: 61 HDYQAFLDSENLDGAQSAGTNPARLFALTTKGTPAHSAVNYQVNDYLLFGPETRGLPSNV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L ++ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 121 LDALPAQQ----KIRIPMLAA-SRSMNLSNAVSVVVYEAWRQLGY 160
>gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
SMY]
gi|452914557|ref|ZP_21963184.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Bacillus subtilis
MB73/2]
gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642]
gi|407956575|dbj|BAM49815.1| rRNA methylase [Bacillus subtilis BEST7613]
gi|407963845|dbj|BAM57084.1| rRNA methylase [Bacillus subtilis BEST7003]
gi|452116977|gb|EME07372.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Bacillus subtilis
MB73/2]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + +++ + TK G H+ Y D + +FG ETSGLP + + +
Sbjct: 63 SLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 119 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5948]
gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9765]
gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754]
gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379015058|ref|YP_005291294.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|384862435|ref|YP_005745155.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384870396|ref|YP_005753110.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|387143443|ref|YP_005731836.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|415688554|ref|ZP_11452217.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|417648771|ref|ZP_12298588.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21189]
gi|418281488|ref|ZP_12894297.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21178]
gi|418285425|ref|ZP_12898100.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21209]
gi|418319796|ref|ZP_12931167.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21232]
gi|418569337|ref|ZP_13133671.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21283]
gi|418579780|ref|ZP_13143872.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418640630|ref|ZP_13202852.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-24]
gi|418646507|ref|ZP_13208611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-88]
gi|418649073|ref|ZP_13211104.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-91]
gi|418659499|ref|ZP_13221170.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-111]
gi|418872817|ref|ZP_13427144.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-125]
gi|418904188|ref|ZP_13458228.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906794|ref|ZP_13460818.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418912482|ref|ZP_13466461.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG547]
gi|418926655|ref|ZP_13480547.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418929203|ref|ZP_13483089.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418948867|ref|ZP_13501148.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-157]
gi|418953254|ref|ZP_13505258.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-189]
gi|419773778|ref|ZP_14299766.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|422743143|ref|ZP_16797136.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745369|ref|ZP_16799310.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785739|ref|ZP_18212539.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus aureus
CN79]
gi|440707678|ref|ZP_20888365.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|440735293|ref|ZP_20914901.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus COL]
gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A5948]
gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
A9765]
gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754]
gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21189]
gi|365164797|gb|EHM56631.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21178]
gi|365170174|gb|EHM61200.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21209]
gi|365239716|gb|EHM80517.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21232]
gi|371985791|gb|EHP02844.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus 21283]
gi|374363755|gb|AEZ37860.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|375020675|gb|EHS14192.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-24]
gi|375030507|gb|EHS23820.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-91]
gi|375032825|gb|EHS26045.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-88]
gi|375035243|gb|EHS28374.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366846|gb|EHS70826.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-125]
gi|375370422|gb|EHS74229.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-157]
gi|375375497|gb|EHS79073.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
subsp. aureus IS-189]
gi|377694038|gb|EHT18405.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377721718|gb|EHT45848.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG547]
gi|377739115|gb|EHT63124.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377741100|gb|EHT65095.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377741245|gb|EHT65239.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377762430|gb|EHT86294.1| putative tRNA methyltransferase [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|383972423|gb|EID88467.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|421956033|gb|EKU08364.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus aureus
CN79]
gi|436430861|gb|ELP28218.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436505733|gb|ELP41612.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus 21282]
Length = 156
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FEVTNGEYYLL--TKFGKKTYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E ++R LNLS + + +YEA RQ ++ L
Sbjct: 114 KEKYQDTALRIPMSE-HIRSLNLSNTAALLIYEALRQQDFPGL 155
>gi|336247741|ref|YP_004591451.1| putative rRNA methylase [Enterobacter aerogenes KCTC 2190]
gi|334733797|gb|AEG96172.1| putative rRNA methylase [Enterobacter aerogenes KCTC 2190]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L +
Sbjct: 61 ADYAAFVASAKPQ----RLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|423126360|ref|ZP_17114039.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5250]
gi|376397932|gb|EHT10562.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
oxytoca 10-5250]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L
Sbjct: 61 RDYAAFIESAKPQ----RLFALTTKGTPAHSAVSYQDGDFLLFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|429041134|ref|ZP_19106217.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0932]
gi|445025664|ref|ZP_21341480.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
7.1982]
gi|427289385|gb|EKW52942.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
96.0932]
gi|444635660|gb|ELW09077.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
7.1982]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS ++Y+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFR-AFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
ATCC 35311]
gi|379727621|ref|YP_005319806.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
DAT561]
gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
ATCC 35311]
gi|376318524|dbj|BAL62311.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
DAT561]
Length = 168
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW KV T
Sbjct: 4 HIVLFEPQIPANTGNIARTCAATNTALHLIEPLGFSTDDKHLKRAGLDYWS----KVEIT 59
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
+ E F + G+K L TK +SEI+Y + Y IFG ET+GL PE +
Sbjct: 60 YYENLPSFLNELGDKPLHLITKFANQIYSEINYDDDQEHYFIFGKETTGL-PETFMRQNK 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
E +RIPM + +VR LNLS + + +YEA RQ + +L+ + D+
Sbjct: 119 E----KCLRIPMNDQHVRSLNLSNTAALVIYEALRQQRFPKLEKSHHYEQDK 166
>gi|401761682|ref|YP_006576689.1| rRNA methylase [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400173216|gb|AFP68065.1| rRNA methylase [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 157
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLESEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|417534781|ref|ZP_12188444.1| tRNA methyltransferase, partial [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|353658044|gb|EHC98339.1| tRNA methyltransferase, partial [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
Length = 151
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E RL A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 HDYAA----FVAAENPLRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 KE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|212640174|ref|YP_002316694.1| rRNA methylase (SpoU class) [Anoxybacillus flavithermus WK1]
gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus
WK1]
Length = 160
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 98/165 (59%), Gaps = 13/165 (7%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
+N L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW YV +
Sbjct: 2 KNVALHVVLYQPEIPANTGNIARTCAATGTSLHLIRPLGFSTDDKMLKRAGLDYWDYVDV 61
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEA 191
+ + E D + +EGE TK G + ++ Y K + +FG ETSGLP +
Sbjct: 62 HYYDSLQELFD--KYKEGE--FFFITKFGKTYYTSFDYSDQTKDYFFVFGRETSGLPKD- 116
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L++ E +RIPM E YVR LNLS + I VYEA RQ N+
Sbjct: 117 LIENNMER----CLRIPMNE-YVRSLNLSNTAAILVYEALRQQNF 156
>gi|365102481|ref|ZP_09332782.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Citrobacter
freundii 4_7_47CFAA]
gi|363646209|gb|EHL85457.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Citrobacter
freundii 4_7_47CFAA]
Length = 157
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 PDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
subsp. hominis C80]
gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
subsp. hominis C80]
Length = 156
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 94/164 (57%), Gaps = 14/164 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F G+ LL TK G T+S+ + + Y IFG ET+GLP D
Sbjct: 64 IESF---FEVTNGKYYLL--TKFGKQTYSDFDFSNTEIENYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + T+RIPM + ++R LNLS + + +YEA RQ N+ LK
Sbjct: 114 KEKYADTTLRIPMSD-HIRSLNLSNTAALLIYEALRQQNFPGLK 156
>gi|220931942|ref|YP_002508850.1| RNA methyltransferase [Halothermothrix orenii H 168]
gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
H 168]
Length = 162
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTCA + LHL+ PLGF +DD LKRAGLDYW + I +
Sbjct: 1 MNIVLVEPEIPQNTGNIARTCAVTGSSLHLIEPLGFSIDDRYLKRAGLDYWDKLDIYYYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E ++ + T + ++ +SY++ D+++FG ET+GL PE+LL E
Sbjct: 61 SLEELMKKYK----DSNFYFATTKAPKSYDIVSYQENDFIVFGKETAGL-PESLLKNNIE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM + R LNLS SV I +YEA RQLN+ LK
Sbjct: 116 N----CIRIPMKDN-TRSLNLSNSVAIILYEALRQLNFPGLK 152
>gi|399923932|ref|ZP_10781290.1| tRNA/rRNA methyltransferase SpoU [Peptoniphilus rhinitidis 1-13]
Length = 154
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +V P+IP NTG IARTC + LHL+ PLGF+VDD LKRAGLDYW V I +
Sbjct: 2 LNIVFYEPEIPFNTGAIARTCGLTHTRLHLIKPLGFKVDDKHLKRAGLDYWHLVDINYYD 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + LA TK +S++ Y+ GD++IFG ET GL PE L+ E
Sbjct: 62 SYDEL---LEKYPDSNFYLASTK-AKKKYSDVKYKDGDFIIFGPETRGL-PEDLIFSNYE 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM++ Y R LNLS S I ++EA RQL++ L+
Sbjct: 117 N----AIRIPMLKDYGRSLNLSNSANIILFEALRQLDFLDLE 154
>gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|402775118|ref|YP_006629062.1| 2'-O-methyltransferase TrmL [Bacillus subtilis QB928]
gi|269969434|sp|O31590.2|TRML_BACSU RecName: Full=Putative tRNA (cytidine(34)-2'-O)-methyltransferase;
AltName: Full=tRNA
(cytidine/uridine-2'-O-)-methyltransferase CspR
gi|225184835|emb|CAB12721.2| tRNA (cytidine(34)-2'-O)-methyltransferase TrmL [Bacillus subtilis
subsp. subtilis str. 168]
gi|402480303|gb|AFQ56812.1| 2'-O-methyltransferase TrmL [Bacillus subtilis QB928]
Length = 160
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + +++ + TK G H+ Y D + +FG ETSGLP + + +
Sbjct: 66 SLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNN 121
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 122 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160
>gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
gi|224955802|gb|EEG37011.1| putative RNA methyltransferase, TrmH family, group 2 [Eubacterium
hallii DSM 3353]
Length = 163
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 104/163 (63%), Gaps = 10/163 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VL P++P NTG I RTC A+ LHL+ PLGF+++D LKRAGLDYW + ++
Sbjct: 1 MVNIVLHEPEMPANTGNIGRTCVATGSILHLIEPLGFKINDKMLKRAGLDYWDKLDVR-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ F D+ + G K +A TK T++++ Y G Y++FG E++G+P E LL+
Sbjct: 59 -TYVNFEDFLAKNPGAKIYMATTK-SKQTYTDVEYEDGCYIMFGKESAGIPEEILLE-HK 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
ET +RIPM+E ++R LNL SV I +YEA RQ +++L+
Sbjct: 116 ET----AVRIPMLE-HIRSLNLGNSVAIVLYEALRQQGFKELE 153
>gi|399888685|ref|ZP_10774562.1| tRNA-methylase [Clostridium arbusti SL206]
Length = 160
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ LKRAGLDYW + I+++
Sbjct: 8 LNIVLFEPEIPQNTGNIARTCVLTNSKLHLIKPLGFSLDEKHLKRAGLDYWKDLDIQLYE 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R ++ + T +G + + + Y++GD+++FG E+ GLP E +
Sbjct: 68 SFDELRKKYK----DSTFYFSTTKGKNYYDDAKYKQGDFIVFGRESCGLPDE-----IRD 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PMV+T +R LNLS +V I YE RQ+ +E +K
Sbjct: 119 SDPQRCIRVPMVKTSLRSLNLSNTVAIVAYEGIRQIGFENMK 160
>gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
Length = 167
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD +LKRAGLDYW V I H
Sbjct: 3 HIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F D+ G + L +K +S++ Y D + IFG ET+GL PE+ + +
Sbjct: 63 LAAFMDFL----GARPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL-PESFMREHA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + +YE RQ + QL+
Sbjct: 118 EK----CLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQLE 156
>gi|358051263|ref|ZP_09145478.1| RNA methyltransferase [Staphylococcus simiae CCM 7213]
gi|357259244|gb|EHJ09086.1| RNA methyltransferase [Staphylococcus simiae CCM 7213]
Length = 156
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 14/164 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEFVNIIYHEN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRK---GDYLIFGSETSGLPPEALLDCT 196
D+F GE LL TK G T+S+ + +Y IFG ET+GLP D
Sbjct: 64 ---IEDFFDNTSGEYYLL--TKFGQKTYSDFDFSNTAVDNYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + +RIPM + ++R LNLS + + +YEA RQ ++ LK
Sbjct: 114 KEKYKETALRIPMSD-HIRSLNLSNTAALLIYEALRQQDFPGLK 156
>gi|392952098|ref|ZP_10317653.1| RNA methyltransferase, TrmH family, group 2 [Hydrocarboniphaga
effusa AP103]
gi|391861060|gb|EIT71588.1| RNA methyltransferase, TrmH family, group 2 [Hydrocarboniphaga
effusa AP103]
Length = 154
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ V L P+IP NTG + R CA S LHL+ PLGF +DD +++RAGLDY I +H
Sbjct: 1 MIDVALYQPEIPPNTGNVMRLCANSGARLHLIQPLGFTLDDARMRRAGLDYRDQATIVLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A FR G+ RLLA + RG+ H ++ YR GD L+FG ET GL P+ALLD
Sbjct: 61 ADFAAFRAAI----GDARLLALSTRGSRRHDQMPYRDGDVLLFGPETRGL-PQALLD--- 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IR+PM R LNLS SV I VYEA RQ ++
Sbjct: 113 ELGPERCIRLPM-RPGSRSLNLSNSVAITVYEAWRQRGFD 151
>gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
15470]
gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
15470]
Length = 170
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CAA LHLV PLGFQ+DD LKRAGLDYW + + VH
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAAEHLTLHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHP 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ R G L TK ++++ISY D L+FG ET GLP E L +
Sbjct: 61 NYDSV---VRMLAGHHFYLNTTK-AIRSYTDISYDGDDVLVFGKETKGLPEELLRSHKED 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTAS 243
IRIPM+E R LNLS +V I EA RQ+ + L S
Sbjct: 117 -----CIRIPMIEE-ARSLNLSNAVAIVAMEAMRQVGFPHLLKQS 155
>gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
Length = 154
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
LQ+ L P+IP NTG I R CA S LHL+ PLGF+ DD ++KRAGLDY + +K H
Sbjct: 1 MLQIALFEPEIPPNTGNIIRLCANSGFKLHLIEPLGFEWDDKRVKRAGLDYHEFADVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F D G+ R+ A T +GT H E Y+ GD L+FG ET GLPPE L
Sbjct: 61 ANYQAFLDCV----GDARIFACTTKGTKYHHEAQYQAGDVLLFGPETRGLPPEVLDTLPQ 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +RIPM+ R +NLS +V + +YE+ RQL +
Sbjct: 117 EQ----KVRIPMLPE-SRSMNLSNAVSVFIYESWRQLGF 150
>gi|253991816|ref|YP_003043172.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica]
gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica]
Length = 170
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+S L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY +
Sbjct: 4 ISGGHMLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFA 63
Query: 133 VIKVHSTWAEF-RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
IK H + F + E RL A T +GT HS +SY+ GDYL+FG ET GLP
Sbjct: 64 NIKQHHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 123
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + + IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 124 LDNMPPQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 163
>gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
gi|156864741|gb|EDO58172.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
sp. L2-50]
Length = 163
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 10/164 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P++P NTG I RTC A+ LHL+ PLGFQ+++ +LKRAGLDYW + + ++
Sbjct: 1 MLNIVLHEPEMPANTGNIGRTCVAAGARLHLIEPLGFQINEKQLKRAGLDYWDKLDVTIY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+F D+ ++ G K +A TK +++++Y + Y++FG E++G+P E LLD
Sbjct: 61 D---DFNDFLKKNPGAKIYMATTK-SKQKYTDVNYEEDAYIMFGKESAGIPEEILLD--- 113
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+ +RIPM +R LNL+ SV I +YEA RQ + +L+T
Sbjct: 114 --YKETAVRIPMFPE-IRSLNLANSVAIVLYEALRQQGFPELET 154
>gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2]
gi|404488233|ref|YP_006712339.1| tRNA(cytidine/uridine-2'-O-)-methyltransferase CspR [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423681330|ref|ZP_17656169.1| rRNA methylase-like protein [Bacillus licheniformis WX-02]
gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52347231|gb|AAU39865.1| putative tRNA(cytidine/uridine-2'-O-)-methyltransferase CspR
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2]
gi|383438104|gb|EID45879.1| rRNA methylase-like protein [Bacillus licheniformis WX-02]
Length = 157
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDY-LIFGSETSGLPPEALLDC 195
+ E D E R TK G H+ Y + DY +FG ET+GLP E +
Sbjct: 63 SLDELFD----AHPEGRFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPKELI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ NY L
Sbjct: 116 --EQNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDL 156
>gi|334121774|ref|ZP_08495822.1| RNA methyltransferase [Enterobacter hormaechei ATCC 49162]
gi|333392756|gb|EGK63853.1| RNA methyltransferase [Enterobacter hormaechei ATCC 49162]
Length = 157
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLEAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
stomatis DSM 17678]
gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
stomatis DSM 17678]
Length = 156
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 100/163 (61%), Gaps = 12/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTCA + LHLV PLGF +DD LKR GLDYW I+ +
Sbjct: 3 INIVLVEPEIPHNTGNIIRTCANTGAILHLVRPLGFSLDDKHLKRCGLDYWDIADIQYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E D + +G K + T G H+++ Y G +L+FG ET GLP + L++ +
Sbjct: 63 SFEELED---KHKGAKFFFS-TINGQKNHTDVKYEDGCFLVFGKETKGLPKD-LIEANMD 117
Query: 199 TFGGGTIRIPM--VETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T IRIPM +E RCLNLS +V I VYEA RQL+++ L
Sbjct: 118 T----CIRIPMRGIEG-ARCLNLSNAVAIVVYEAMRQLDFDGL 155
>gi|260599907|ref|YP_003212478.1| rRNA methylase [Cronobacter turicensis z3032]
gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter
turicensis z3032]
Length = 157
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRH 60
Query: 138 STWAEFRDY--FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
RDY F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 ------RDYAAFLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVL 114
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 115 PPEQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|307728345|ref|YP_003905569.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1003]
gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1003]
Length = 156
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF ++D KL+RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLEDAKLRRAGLDYHEYAQMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ WA F ++ R+ AFT RG+ E +++ GD+ +FG+ET GLP L T
Sbjct: 61 ANWAAF--IAKESPDASRMFAFTTRGSGRFHEHAFKPGDWFVFGAETRGLPDAVLDQFTG 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V I V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAIVVFEAWRQTGFE 153
>gi|452993618|emb|CCQ94902.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Clostridium
ultunense Esp]
Length = 155
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLV P+IP NTG I RTC+ + LHLV PLGF ++D LKRAGLDYW V I H +
Sbjct: 4 HIVLVEPEIPSNTGNIVRTCSVTGSVLHLVHPLGFSIEDRYLKRAGLDYWNEVEIHHHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+F D + G +R T + + E+S++ GDYL+FG ET GLP + +
Sbjct: 64 LQDFLD----RVGLERAYLATTKAKQGYHEVSFQDGDYLLFGKETKGLPEDLIFSHEER- 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ ++ R LNLS SV I +YEA RQ+ +
Sbjct: 119 ----AIRIPML-SHARSLNLSNSVAIVLYEALRQIGF 150
>gi|395760889|ref|ZP_10441558.1| tRNA/rRNA methyltransferase [Janthinobacterium lividum PAMC 25724]
Length = 156
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHLV PLGF +DD K+KRAGLDY Y +KVH
Sbjct: 1 MFHVVLVEPEIPPNTGNVIRLCANTGAQLHLVEPLGFPLDDAKMKRAGLDYHDYAKMKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
WA F Q R+ A T RG+ E+++ GD +FGSET GL P +
Sbjct: 61 KNWAAF--LLDTQPDPSRMFAMTTRGSRPFGEVAFLPGDVFVFGSETKGLDPALRDGFPA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IR+PM R LNLS +V + VYEA RQ Y+
Sbjct: 119 EQ----RIRLPMRPDN-RSLNLSNTVAVVVYEAWRQHGYQ 153
>gi|354725675|ref|ZP_09039890.1| putative rRNA methylase [Enterobacter mori LMG 25706]
Length = 157
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAT----FLEAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|300857062|ref|YP_003782046.1| rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM
13528]
Length = 155
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFQPEIPQNTGNIARTCVLTGSKLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ T G + + E ++ GD+++FG ET GLP E + D E
Sbjct: 63 SYEELREKYKGGT----FYFSTTHGKNFYHEAKFKDGDFIVFGRETCGLPDE-IRDSAPE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IR+PM++T R LNLS +V I YEA RQ+++ +K
Sbjct: 118 K----CIRVPMIKTSTRSLNLSNTVAIVAYEALRQIDFPDMK 155
>gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|392977035|ref|YP_006475623.1| putative rRNA methylase [Enterobacter cloacae subsp. dissolvens
SDM]
gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|392322968|gb|AFM57921.1| putative rRNA methylase [Enterobacter cloacae subsp. dissolvens
SDM]
Length = 157
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLESEKPERMFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|344200862|ref|YP_004785188.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrivorans
SS3]
gi|343776306|gb|AEM48862.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
ferrivorans SS3]
Length = 159
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
FL V+L P+IP NTG I R CA + LHLV PLGF DD +L+RAGLDY + + H
Sbjct: 6 FLHVILYEPEIPPNTGNIIRLCANTGATLHLVEPLGFAWDDHRLRRAGLDYHEFAQVHRH 65
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ WA R + G+ R+ AF+ +GT ++ +++Y+ GD L+FG ET GLP LLD
Sbjct: 66 ADWAACRAFL----GDARIFAFSTKGTQSYQQVAYQPGDALLFGPETRGLPAR-LLDSLP 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T +R+PM R LNLS + +AV+EA RQ++Y
Sbjct: 121 TT---QVLRLPM-RPGQRSLNLSNACAVAVFEAWRQMDY 155
>gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
gi|407712014|ref|YP_006832579.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Burkholderia
phenoliruptrix BR3459a]
gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1001]
gi|407234198|gb|AFT84397.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Burkholderia
phenoliruptrix BR3459a]
Length = 156
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD KL+RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ WA F ++ R+ AFT RG+ + ++ GD+ +FG+ET GLP D
Sbjct: 61 ANWAAF--IAKESPEPSRMFAFTTRGSGRFHDHAFAAGDWFVFGAETRGLP-----DSVL 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E FG +R+PM R LNLS +V I V+EA RQ+ +E
Sbjct: 114 EQFGSEERVRLPM-RPGNRSLNLSNTVAIVVFEAWRQMGFE 153
>gi|425070721|ref|ZP_18473827.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Proteus
mirabilis WGLW4]
gi|404599546|gb|EKA99998.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Proteus
mirabilis WGLW4]
Length = 166
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q RL A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + V+EA RQL Y
Sbjct: 121 LDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|417386619|ref|ZP_12151265.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417488005|ref|ZP_12172656.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353602735|gb|EHC58019.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353632353|gb|EHC79431.1| tRNA methyltransferase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
Length = 157
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 HDYAA----FVAAENPLRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPK 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320]
gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320]
gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis]
gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis]
Length = 167
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q RL A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + V+EA RQL Y
Sbjct: 121 LDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 156
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVLV P+IP NTG IARTC + LHLV PLGF + + LKR+GLDYWPY+ +KV+
Sbjct: 3 INVVLVEPEIPQNTGNIARTCVLTGSKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF +G K LA TK G + E+ Y Y++FG E++GLP E
Sbjct: 63 NIEEF---LESTKGSKYYLATTK-GKHFYHEVKYEDDSYILFGKESAGLP-----QWLRE 113
Query: 199 TFGGGTIRIPMVETYV-RCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM E R LNLS SV I VYEA +QL + +
Sbjct: 114 MYEDDCIRIPMNEVKAERSLNLSNSVAILVYEALKQLGFPNM 155
>gi|433656052|ref|YP_007299760.1| putative rRNA methylase SpoU family [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433294241|gb|AGB20063.1| putative rRNA methylase SpoU family [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 156
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVLV P+IP NTG IARTC + LHLV PLGF + + LKR+GLDYWPY+ +KV+
Sbjct: 3 INVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF +G K LA TK G + E+ Y Y++FG E++GLP E
Sbjct: 63 NIEEF---LNSTKGSKYYLATTK-GKHFYHEVKYEDDSYILFGKESAGLP-----QWLRE 113
Query: 199 TFGGGTIRIPMVETYV-RCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM E R LNLS SV I VYEA +QL + +
Sbjct: 114 MYEDDCIRIPMNEVKAERSLNLSNSVAIVVYEALKQLGFPNM 155
>gi|345297320|ref|YP_004826678.1| TrmH family RNA methyltransferase [Enterobacter asburiae LF7a]
gi|345091257|gb|AEN62893.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter asburiae
LF7a]
Length = 157
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLEAEQPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILGALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|402700293|ref|ZP_10848272.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fragi A22]
Length = 151
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+GF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPIGFELDDKRLRRAGLDYHEYAPLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + + +GD IFG E+ GLPPE L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDARFAEGDAFIFGPESRGLPPEVL----D 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
G +R+PM E R LNLS +V +AVYEA RQL+++
Sbjct: 113 ALDGDHRLRLPMREG-CRSLNLSNTVAVAVYEAWRQLDFK 151
>gi|374851054|dbj|BAL54025.1| RNA methyltransferase, TrmH family [uncultured planctomycete]
Length = 151
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 91/157 (57%), Gaps = 9/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVLV P+I N G IARTCAA+ C LHLVGPLGF++DD L+RAG+DYW V +
Sbjct: 1 MLHVVLVEPEIAPNVGNIARTCAATGCRLHLVGPLGFRLDDRALRRAGVDYWDVVDWVRY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W EFR G K++ FT RG + + YR D L+FG E+ GLP L +C +
Sbjct: 61 RNWEEFRGNI----GNKQMWLFTARGGQPYHRVPYRDEDCLVFGCESRGLPESLLAECRA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ IP+ VR LNL+ +VGIAV A L
Sbjct: 117 -----WQVCIPLPSGKVRSLNLATAVGIAVLRALESL 148
>gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis]
Length = 167
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 96/166 (57%), Gaps = 13/166 (7%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFR-------DYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE 190
+ F D + G RL A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLSPDNVQSPTG-ARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPY 119
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + V+EA RQL Y
Sbjct: 120 VLDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|383754021|ref|YP_005432924.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366073|dbj|BAL82901.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 163
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 92/162 (56%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IPGNTG IAR CAA+ LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLIEPEIPGNTGNIARLCAATGIELHLVKPLGFSTDDKHLKRAGLDYWHLVKVHYHK 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + + + + H+E+ Y D L+FG E++G+P E L
Sbjct: 61 NFDEVLEKYPNH----NFYYCSTKAPHAHTEVQYTSEDMLVFGKESAGIPEEIL-----N 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+E R LNLS +V + YEA RQL++ QL+
Sbjct: 112 EHWDSCVRIPMIED-ARSLNLSNAVAVVAYEALRQLDFGQLE 152
>gi|238917775|ref|YP_002931292.1| TrmH family RNA methyltransferase [Eubacterium eligens ATCC 27750]
gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
ATCC 27750]
Length = 165
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P++P NTG I RTC A+ LHL+GPLGF+++D LKRAGLDYW + +
Sbjct: 1 MLNIVLHEPEMPANTGNIGRTCVATGARLHLIGPLGFKINDKMLKRAGLDYWDKLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + ++ D+ + G K +A TK T++E++Y + Y++FG E++G+P E L+D
Sbjct: 58 TEYDDYNDFLAKNPGAKVYMATTK-AHKTYTEVNYEEDCYIMFGKESAGIPEEILVD-NE 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+T IRIPM+ +R LNLS SV I +YEA RQ ++ +
Sbjct: 116 DT----CIRIPMIGD-IRSLNLSNSVAIVLYEALRQHDFSHM 152
>gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus
oremlandii OhILAs]
Length = 156
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL+ P+IP NTG IARTCAA+ LHL+GP+GF +D+ +KRAGLDYW + ++ +
Sbjct: 1 MLHVVLLEPEIPQNTGNIARTCAATGSVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD-YLIFGSETSGLPPEALLDCT 196
++ E F + E + T + HSE+ Y + + Y++FG ET+G+ P+ +L+
Sbjct: 61 DSYEE----FLSKNPEATIYYATTKAEKAHSEMVYPEENCYIMFGKETAGI-PKNILNEN 115
Query: 197 SETFGGGTIRIPMVE-TYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
ET IRIPMV+ R LNLS SV I VYE RQ NY ++
Sbjct: 116 KET----CIRIPMVDLEKARSLNLSNSVAIVVYEVLRQYNYPNMR 156
>gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379]
gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM
2379]
Length = 157
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 92/153 (60%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VLV P+IP NTG IAR CAA+ LHLV PLGF +DD +LKRAGLDYW V +KV W
Sbjct: 9 IVLVEPEIPPNTGNIARLCAATGTVLHLVEPLGFSIDDRQLKRAGLDYWGSVTLKV---W 65
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+ Q+ R + + ++ +R GD+++FG ET GLP E +L+ SET
Sbjct: 66 QRLEQVW-QEFPRGRFFYLSTKAGRSYLAADFRPGDFIVFGKETKGLPAE-ILEWNSET- 122
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM VR LNLS S GI +YEA RQ
Sbjct: 123 ---AITIPMPANAVRSLNLSTSAGIVLYEALRQ 152
>gi|451948476|ref|YP_007469071.1| putative rRNA methylase SpoU family [Desulfocapsa sulfexigens DSM
10523]
gi|451907824|gb|AGF79418.1| putative rRNA methylase SpoU family [Desulfocapsa sulfexigens DSM
10523]
Length = 153
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
++ N+ +VLV P+IP NTG IAR C A+ LHLV PLGF DD LKRAGLDYW +V
Sbjct: 1 MNDNESFHIVLVEPEIPPNTGSIARLCGATNSVLHLVRPLGFSTDDKHLKRAGLDYWKFV 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
I+ W F D+ + Q+ E RL T + + ++ + ++ GDYL+FG ET GLP + L
Sbjct: 61 DIRY---WECFDDFLKAQD-ENRLYFLTTKTSRSYIDAPFKPGDYLVFGKETKGLPEDLL 116
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA-ARQ 233
+ + +PM + +R LNL+++ GI +Y A +RQ
Sbjct: 117 -----KLYSDRCFTLPMANSNIRSLNLAMTAGIVLYAALSRQ 153
>gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase SpoU [Dictyoglomus turgidum DSM 6724]
gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
Length = 153
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 10/156 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL+ PQIP NTG I R C A+ LHLVG +GF ++D LKRAGLDYW ++ +V+
Sbjct: 5 LHVVLIEPQIPYNTGNIGRLCVATNSKLHLVGKIGFSLNDKYLKRAGLDYWSFLDYEVYK 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ EF + R + G R + ++E+SY++GDYLIFGSE G+P E + E
Sbjct: 65 NFEEFVE--RNKNG--RFIFVESPAFKLYTEVSYQEGDYLIFGSEDYGIPSEII-----E 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ ++ IPM VR LNLS SV + VYEA RQ+
Sbjct: 116 KYWENSVTIPMFGP-VRSLNLSSSVAVVVYEALRQI 150
>gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
gi|387815499|ref|YP_005430989.1| tRNA/rRNA methyltransferase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei
VT8]
gi|381340519|emb|CCG96566.1| tRNA/rRNA methyltransferase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 154
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG I R CA + C LHL+ PLGF ++D +++RAGLDY Y +K+H
Sbjct: 1 MLHVVLYEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSLEDKQMRRAGLDYSEYATVKIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F E RL T +G+ + E+++R GDYL+FG ET GLP + +
Sbjct: 61 PDY----DSFLATEQPSRLFGLTTKGSRHYHEVAFRDGDYLMFGPETRGLPEDVRNGLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS + + VYEA RQL +E
Sbjct: 117 EH----RLRVPM-RPESRSLNLSNTAALVVYEAWRQLGFE 151
>gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 170
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 99/161 (61%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CAA+ C LHLV PLGF V+D LKRAGLDYW V I +
Sbjct: 12 MHIVLVEPEIPGNTGNIARLCAATGCHLHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYD 71
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + ++ + K L T + S+++++ Y + LIFG ET+GL PE LL E
Sbjct: 72 SVYEVLEKYK--DNPKYFL--TTKAHSSYADVQYAQDSLLIFGKETAGL-PETLLHEYPE 126
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM+E R LNLS SV I YEA RQ + L
Sbjct: 127 S----CIRIPMIED-ARSLNLSNSVAIVAYEALRQNGFADL 162
>gi|442595451|ref|ZP_21013297.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441604300|emb|CCP98431.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
Length = 157
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANIGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|422006952|ref|ZP_16353940.1| methyltransferase [Providencia rettgeri Dmel1]
gi|414098143|gb|EKT59793.1| methyltransferase [Providencia rettgeri Dmel1]
Length = 167
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 23/169 (13%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFDLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH-- 60
Query: 140 WAEFRDYF------------RQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGL 187
DYF Q E R+ A T +G +HS +SY++ DYL+FG ET GL
Sbjct: 61 ----HDYFTFLKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQQNDYLMFGPETRGL 116
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
PP L + E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 117 PPYVLDNMPMEQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|392972481|ref|ZP_10337872.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046182|ref|ZP_10901655.1| rRNA methylase [Staphylococcus sp. OJ82]
gi|392509527|emb|CCI61179.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763891|gb|EJX17980.1| rRNA methylase [Staphylococcus sp. OJ82]
Length = 156
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIPGNTG IARTCA + LHL+ PLGF DD LKRAGLDYW V I H +
Sbjct: 4 HIVLYQPQIPGNTGSIARTCAGTYTHLHLIKPLGFSTDDKMLKRAGLDYWETVNITYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDCT 196
D+F EG LL TK G T+S+ + + IFG ET+GLP D
Sbjct: 64 ---IEDFFEATEGTYYLL--TKFGKKTYSDFDFTDTAHDHFFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
ET+ +RIPM + +R LNLS + + +YEA RQ ++ +L
Sbjct: 114 KETYQETALRIPMNDN-IRSLNLSNTASLLIYEALRQQSFPEL 155
>gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 156
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 94/160 (58%), Gaps = 14/160 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 4 HVVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYYEN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
+F F Q +G L+ TK G++T ++ Y + Y +FG ET+GLP D
Sbjct: 64 IEQF---FDQTDGHYYLI--TKFGSTTFTDFDYSNPEEDHYFVFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E + +RIPM + ++R LNLS + I VYEA RQ NY
Sbjct: 114 KEKYHDTALRIPMND-HIRSLNLSNTAAILVYEALRQQNY 152
>gi|401678192|ref|ZP_10810160.1| putative tRNA/rRNA methyltransferase [Enterobacter sp. SST3]
gi|400214560|gb|EJO45478.1| putative tRNA/rRNA methyltransferase [Enterobacter sp. SST3]
Length = 157
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVIRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLEAEQPERMFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
gi|188023560|gb|EDU61600.1| RNA methyltransferase, TrmH family, group 2 [Providencia stuartii
ATCC 25827]
Length = 167
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHD 62
Query: 140 WAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
+ F D Q R+ A T +G +HS +SYR+ DYL+FG ET GLPP L
Sbjct: 63 YYAFLDSEGLSPDNNQSASCARVFALTTKGKPSHSNVSYRQDDYLMFGPETRGLPPYVLD 122
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 123 NMPIEQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4]
gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter
tengcongensis MB4]
Length = 156
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 99/163 (60%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV P+IP NTG IARTC + LHLV PLGF +D+ ++RAGLDYWP + + V+
Sbjct: 3 LNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKDVRRAGLDYWPLLDLTVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF + +G+K LA T R + E+ Y +LIFG ET+GL P+ L+D E
Sbjct: 63 NLQEF---LEKHKGKKFYLA-TTRANKYYHEVKYEDEAFLIFGKETTGL-PQWLIDEYYE 117
Query: 199 TFGGGTIRIPMVETYV-RCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM E + R LNLS SV I VYEA +QL + ++
Sbjct: 118 ----DCIRIPMHEKILWRSLNLSNSVAIIVYEALKQLGFPNMR 156
>gi|425070412|ref|ZP_18473525.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Proteus
mirabilis WGLW6]
gi|404594709|gb|EKA95265.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Proteus
mirabilis WGLW6]
Length = 167
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q RL A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + ++EA RQL Y
Sbjct: 121 LDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVIFEAWRQLGY 160
>gi|418326761|ref|ZP_12937940.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU071]
gi|365224844|gb|EHM66104.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU071]
Length = 156
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF +D LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWKHVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
EF F EG LL TK G T+S+ ++ + Y IFG ET+GLP +
Sbjct: 64 IEEF---FANTEGHYYLL--TKFGKQTYSDFNFSNTNEDYYFIFGKETTGLP-----EWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ +Y L
Sbjct: 114 KEKYANTALRIPMSDN-IRSLNLSNTAALLIYEALRQQDYPNL 155
>gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63]
gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07]
gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07]
Length = 156
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 97/163 (59%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG I RTCAA+ LHLV PLGF +DD LKR GLDYW I+ +
Sbjct: 3 LNIVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + + T + +HS++ Y + +++FG ET GL PE LL +
Sbjct: 63 SFEELQEKYPNS----KYFFSTTKAKQSHSDVKYEENCFIVFGKETKGL-PETLLKANMD 117
Query: 199 TFGGGTIRIPMVET-YVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T IR+PM++ R LNLS SV I VYEA RQ+ Y ++
Sbjct: 118 T----CIRVPMLDVEKARSLNLSNSVAIVVYEALRQIGYPNMR 156
>gi|365847255|ref|ZP_09387744.1| RNA methyltransferase, TrmH family, group 2 [Yokenella regensburgei
ATCC 43003]
gi|364572509|gb|EHM50049.1| RNA methyltransferase, TrmH family, group 2 [Yokenella regensburgei
ATCC 43003]
Length = 157
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + + F E +RL A T +GT HS +SY+ GD+L+FG ET GL P ++LD
Sbjct: 61 ANY----EAFFAAENPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGL-PASILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 QE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus champanellensis
18P13]
Length = 172
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 90/161 (55%), Gaps = 11/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV PQIP NTG IARTCA + LHL+ P+GF V D LKRAGLDYW + I +
Sbjct: 4 LNIVLVEPQIPQNTGNIARTCAVTGARLHLIRPMGFTVTDKHLKRAGLDYWDKLDITYYD 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++AEF FT +G HS+ Y YLIFG E GLP + L E
Sbjct: 64 SFAEF-----SARNPGAYFFFTTKGRKIHSDAVYPNNAYLIFGREDQGLPEDLLFAHPEE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM +R LNLS SV IAVYEA RQ +Y L
Sbjct: 119 -----CVRIPM-RNELRSLNLSNSVAIAVYEALRQWDYPDL 153
>gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens E str. JGS1987]
gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens B str. ATCC 3626]
gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens CPE str. F4969]
gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens NCTC 8239]
gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens C str. JGS1495]
gi|422874181|ref|ZP_16920666.1| RNA methyltransferase [Clostridium perfringens F262]
gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens ATCC 13124]
gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens C str. JGS1495]
gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens E str. JGS1987]
gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens B str. ATCC 3626]
gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens CPE str. F4969]
gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens NCTC 8239]
gi|380304932|gb|EIA17216.1| RNA methyltransferase [Clostridium perfringens F262]
Length = 153
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LH++ P+GF +DD LKRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ + F ++ G+K++ T + E+ Y +G +++FG E++G+P D +
Sbjct: 63 SYED----FMKKYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPE----DVHNA 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G I++PM+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 115 HHG---IKVPMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|417792828|ref|ZP_12440143.1| putative rRNA methylase [Cronobacter sakazakii E899]
gi|429117353|ref|ZP_19178271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter sakazakii
701]
gi|449310315|ref|YP_007442671.1| rRNA methylase [Cronobacter sakazakii SP291]
gi|333953111|gb|EGL71098.1| putative rRNA methylase [Cronobacter sakazakii E899]
gi|426320482|emb|CCK04384.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter sakazakii
701]
gi|449100348|gb|AGE88382.1| rRNA methylase [Cronobacter sakazakii SP291]
Length = 157
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + E + L A T +GT HS +SY+ GDYL+FG ET GL P ++LD
Sbjct: 61 ADYAA----FLEAEKPQSLFALTTKGTPAHSAVSYQDGDYLMFGPETRGL-PASILDVLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 QE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|146309796|ref|YP_001174870.1| tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638]
gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638]
Length = 157
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +R+ A T +GT HS +SY++GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FVAAENPQRMFALTTKGTPAHSAVSYQEGDYLMFGPETRGLPATILDVLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|206578587|ref|YP_002236029.1| tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae 342]
gi|288933036|ref|YP_003437095.1| TrmH family RNA methyltransferase [Klebsiella variicola At-22]
gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
342]
gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
At-22]
gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
Length = 157
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L
Sbjct: 61 ADYAAFLASAQPQ----RLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|444914721|ref|ZP_21234863.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cystobacter fuscus DSM
2262]
gi|444714580|gb|ELW55461.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cystobacter fuscus DSM
2262]
Length = 167
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 101/167 (60%), Gaps = 12/167 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLVSPQIP NTG IAR CA + C L LV PLGF +DD LKRAGLDYW V +K++
Sbjct: 10 HLVLVSPQIPPNTGNIARLCAVTGCRLILVEPLGFSIDDRHLKRAGLDYWDKVFLKLYP- 68
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
++ Y + +R L F+ R ++ +GD+L+FGSET GLPPE + T
Sbjct: 69 --DYGAYLAEWPSARRWL-FSARAATSLYAARLEEGDHLVFGSETQGLPPEVM------T 119
Query: 200 FGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
G GT + +PM+ R LNLS +VGIA YEA RQ+ + +DT
Sbjct: 120 GGSGTAVTLPMLPER-RSLNLSTAVGIAAYEALRQVGFGLPGGRADT 165
>gi|357237298|ref|ZP_09124641.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus criceti
HS-6]
gi|356885280|gb|EHI75480.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus criceti
HS-6]
Length = 182
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 98/162 (60%), Gaps = 12/162 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 19 HVVLFQPQIPANTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISFYDS 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
AEF Q +G L+ +K S +S+I Y + Y IFG E GLP + + + +
Sbjct: 79 LAEF---LVQCQGAIHLV--SKFAESIYSDIDYADDQDHYFIFGREDKGLPEDFMREHSE 133
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM + +VR LNLS +V + VYEA RQ N+ L
Sbjct: 134 Q-----AIRIPMNDQHVRSLNLSNTVCMIVYEALRQQNFNHL 170
>gi|387783366|ref|YP_006069449.1| tRNA/rRNA methyltransferase yibK [Streptococcus salivarius JIM8777]
gi|338744248|emb|CCB94614.1| uncharacterized tRNA/rRNA methyltransferase yibK [Streptococcus
salivarius JIM8777]
Length = 169
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 101/163 (61%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 5 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+F + Q+G RL TK T+SE +Y G+ Y +FG E +GLP + + + T
Sbjct: 65 LADFMS--KNQDG--RLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHTE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM + +VR LN+S +V + VYEA RQ +E L+
Sbjct: 121 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLE 158
>gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera versatilis 301]
gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera
versatilis 301]
Length = 154
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + LHLV PLGF +DD +LKRAGLDY Y ++VH
Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGAALHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W + KRL A T +G++ HSEI ++ D +FG ET GLP E + T+
Sbjct: 61 ENWEACKASLTG----KRLFAITTKGSTRHSEIQFKAEDVFVFGPETRGLPEEIRAEFTA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM+ R LNLS S + +YEA RQ+ +E
Sbjct: 117 EH----RLRLPMLPD-SRSLNLSNSAAVLLYEAWRQIGFE 151
>gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
Length = 156
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 95/160 (59%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ VVLV P+IP NTG + R CA + LHLV PLGF ++D +++RAGLDY Y + VH
Sbjct: 1 MINVVLVEPEIPPNTGNVIRLCANTGVQLHLVEPLGFPLEDARMRRAGLDYHEYANMLVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F D RQQ +R A T +G + ++ ++ GDYL+FGSET GL E
Sbjct: 61 PGWEAFLD--RQQPNPQRCFAMTTKGKHSPFDVKFQAGDYLMFGSETRGLSEEVRNWFAR 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E + +R+PM R LNLS SV + VYEA RQL +E
Sbjct: 119 ENW----LRLPM-RPESRSLNLSNSVAVMVYEAWRQLGFE 153
>gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
gi|225204684|gb|EEG87038.1| RNA methyltransferase, TrmH family, group 2 [Proteus penneri ATCC
35198]
Length = 167
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q R+ A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLNPDNAQSPSGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + V+EA RQL Y
Sbjct: 121 LDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|408423913|emb|CCJ11324.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408425902|emb|CCJ13289.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408427890|emb|CCJ15253.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408429879|emb|CCJ27044.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408431865|emb|CCJ19180.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408433860|emb|CCJ21145.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408435852|emb|CCJ23112.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
gi|408437835|emb|CCJ25078.1| Putative tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus
aureus subsp. aureus ST228]
Length = 156
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 93/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G +S+ + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FEATNGEYYLL--TKFGKKAYSDFDFSNHDKDFYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E ++R LNLS + + +YEA RQ ++ L
Sbjct: 114 KEKYQDTALRIPMSE-HIRSLNLSNTAALLIYEALRQQDFPGL 155
>gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
92-3]
gi|378981269|ref|YP_005229410.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|386037090|ref|YP_005957003.1| putative rRNA methylase [Klebsiella pneumoniae KCTC 2242]
gi|402778461|ref|YP_006634007.1| tRNA (cytosine34-2'-O-)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|419976035|ref|ZP_14491438.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419981811|ref|ZP_14497082.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419987342|ref|ZP_14502463.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419992912|ref|ZP_14507862.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419999137|ref|ZP_14513916.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420004908|ref|ZP_14519539.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420010501|ref|ZP_14524973.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420016659|ref|ZP_14530948.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420022143|ref|ZP_14536315.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420027804|ref|ZP_14541792.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420033494|ref|ZP_14547298.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420039244|ref|ZP_14552881.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420045126|ref|ZP_14558598.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420051056|ref|ZP_14564348.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420056688|ref|ZP_14569841.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420062430|ref|ZP_14575402.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420068019|ref|ZP_14580805.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420073436|ref|ZP_14586062.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420079182|ref|ZP_14591631.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420082665|ref|ZP_14594959.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421910234|ref|ZP_16340023.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|424832922|ref|ZP_18257650.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|428147695|ref|ZP_18995607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|428938067|ref|ZP_19011199.1| rRNA methylase [Klebsiella pneumoniae VA360]
gi|449060194|ref|ZP_21737861.1| rRNA methylase [Klebsiella pneumoniae hvKP1]
gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
92-3]
gi|339764218|gb|AEK00439.1| putative rRNA methylase [Klebsiella pneumoniae KCTC 2242]
gi|364520680|gb|AEW63808.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|397341530|gb|EJJ34707.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397342131|gb|EJJ35297.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397344882|gb|EJJ38011.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397358728|gb|EJJ51441.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397359784|gb|EJJ52473.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397363982|gb|EJJ56617.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397374628|gb|EJJ66953.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397378553|gb|EJJ70763.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397385396|gb|EJJ77497.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397392717|gb|EJJ84499.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397394862|gb|EJJ86581.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397403363|gb|EJJ94935.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397409988|gb|EJK01284.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397410359|gb|EJK01642.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397420336|gb|EJK11417.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397427107|gb|EJK17893.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397427982|gb|EJK18733.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397437917|gb|EJK28453.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397443983|gb|EJK34277.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397451982|gb|EJK42058.1| putative rRNA methylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402539432|gb|AFQ63581.1| tRNA (cytosine34-2'-O-)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|410115832|emb|CCM82648.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|414710368|emb|CCN32072.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426306257|gb|EKV68362.1| rRNA methylase [Klebsiella pneumoniae VA360]
gi|427542336|emb|CCM91745.1| tRNA (cytosine34-2'-O-)-methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|448874097|gb|EMB09157.1| rRNA methylase [Klebsiella pneumoniae hvKP1]
Length = 157
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L
Sbjct: 61 ADYAAFVASAQPQ----RLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
genomosp. type_1 str. 28L]
gi|335048777|ref|ZP_08541792.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera sp. UPII
199-6]
gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
genomosp. type_1 str. 28L]
gi|333765031|gb|EGL42403.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera sp. UPII
199-6]
Length = 161
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 94/161 (58%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +V+V P+IPGNTG +AR CAA+ LHLV PLGF ++D LKRAGLDYWP V ++VH
Sbjct: 1 MHIVMVEPEIPGNTGNVARLCAANHMTLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
A D + G + T + +++IS+ + D L FG ET GLP L +
Sbjct: 61 NVA---DVMAKYAGHA-MYYLTTKSRQCYADISFTEDDLLFFGKETKGLPESMLKEHPER 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
F RIPM+E R LNLS SV I YEA RQL + L
Sbjct: 117 CF-----RIPMIEA-ARSLNLSNSVAIVAYEALRQLQFPGL 151
>gi|226942627|ref|YP_002797700.1| RNA methyl transferase TrmH [Azotobacter vinelandii DJ]
gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
Length = 153
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA + C LHL+ PLGF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCSLHLIDPLGFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + G RL AFT +G+ + ++YR+GD +FG E+ GLP E
Sbjct: 61 ADLPSCLESL----GRPRLFAFTTKGSQPYHSVAYRRGDAFLFGPESRGLPQEVRESLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM + R LNLS +V +AVYEA RQL++
Sbjct: 117 EQ----RLRLPM-RSACRSLNLSNTVAVAVYEAWRQLDF 150
>gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
ATCC 29220]
gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
ATCC 29220]
Length = 157
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 PDYAA----FVAAEHPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|313471802|sp|C7BSD3.2|TRML_PHOAA RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
Length = 162
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60
Query: 138 STWAEF-RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F + E RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 121 PQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 155
>gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis
JLW8]
Length = 154
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + LHLV PLGF ++D +LKRAGLDY Y +KVH
Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGAQLHLVKPLGFSLEDKQLKRAGLDYHEYANLKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W + + RL A T +G++THS I ++ GD +FG ET GL E + T+
Sbjct: 61 ENWEDCKAALAGH----RLFAITTKGSTTHSHIQFKAGDAFVFGPETRGLSEEVRNEFTA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM+ R LNLS S I +YEA RQ+ +E
Sbjct: 117 EH----RVRLPMLPN-SRSLNLSNSAAILLYEAWRQIGFE 151
>gi|365968433|ref|YP_004949994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Enterobacter
cloacae EcWSU1]
gi|365747346|gb|AEW71573.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Enterobacter
cloacae EcWSU1]
Length = 157
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +R+ A T +GT HS + Y+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLESENPQRMFALTTKGTPAHSAVRYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|374581878|ref|ZP_09654972.1| putative rRNA methylase SpoU family [Desulfosporosinus youngiae DSM
17734]
gi|374417960|gb|EHQ90395.1| putative rRNA methylase SpoU family [Desulfosporosinus youngiae DSM
17734]
Length = 156
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 99/165 (60%), Gaps = 10/165 (6%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
N L +VLV P+IP NTG +AR CAA+ LHLV PLGF +DD LKRAGLDYW + I
Sbjct: 1 MNTRLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFSIDDKHLKRAGLDYWHLLDI 60
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
++ +AEF + + R LA TK G S +++++Y G YL+FG ET GL PE +L
Sbjct: 61 FLYENFAEFEE---KNPVGPRYLATTKGGRS-YTDVTYEPGGYLLFGKETKGLAPE-ILA 115
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
ET +R+PM R LNLS SV + VYE RQ + L
Sbjct: 116 RYPET----ALRLPM-RADARSLNLSNSVAVVVYEVLRQWGFPDL 155
>gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0465]
gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. CNEVA-9066]
gi|421641018|ref|ZP_16081585.1| TrmH family RNA methyltransferase [Bacillus anthracis str. BF1]
gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0465]
gi|403391864|gb|EJY89133.1| TrmH family RNA methyltransferase [Bacillus anthracis str. BF1]
Length = 162
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGIELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF Y + ++GE TK G H+ Y K + Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNKDGE--FFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPM + VR LNLS + I +YEA RQ NY
Sbjct: 116 -EENF-DHCLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNY 153
>gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
micronuciformis F0359]
gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
micronuciformis F0359]
Length = 160
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VV+V P+IPGNTG ++R CAA+ LHLV PLGF ++D LKRAGLDYW + + VH
Sbjct: 1 MHVVMVEPEIPGNTGNVSRLCAANHITLHLVKPLGFSLEDKYLKRAGLDYWDLLDLHVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E +QQ R T + ++++I +R+ D L+FG ET GLP + L
Sbjct: 61 NFEE----VQQQYPNSRYFYLTTKSDKSYTDIVFREDDMLVFGKETKGLPEDLLKRNADY 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
F RIPM++ R LNLS +V I YEA RQL +
Sbjct: 117 CF-----RIPMIDK-ARSLNLSNAVAIVSYEALRQLGF 148
>gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5]
gi|384174579|ref|YP_005555964.1| RNA methyltransferase, TrmH family, group 2 [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|428278385|ref|YP_005560120.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto
BEST195]
gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto
BEST195]
gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5]
gi|349593803|gb|AEP89990.1| RNA methyltransferase, TrmH family, group 2 [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 157
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 93/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + + + + TK G H+ Y D + +FG ETSGLP + + +
Sbjct: 63 SLEELFEAYEKGQ----FFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 119 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 157
>gi|440285617|ref|YP_007338382.1| rRNA methylase, putative, group 2 [Enterobacteriaceae bacterium
strain FGI 57]
gi|440045139|gb|AGB76197.1| rRNA methylase, putative, group 2 [Enterobacteriaceae bacterium
strain FGI 57]
Length = 157
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + +
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVTRY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 QNY----DAFFEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|334127874|ref|ZP_08501776.1| RNA methyltransferase [Centipeda periodontii DSM 2778]
gi|333388595|gb|EGK59769.1| RNA methyltransferase [Centipeda periodontii DSM 2778]
Length = 164
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 99/168 (58%), Gaps = 10/168 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMDLHLVRPLGFSTDDKYLKRAGLDYWHLVNVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A+ + +Q EG TK +++I+Y +L+FG ET+GL P++LL E
Sbjct: 61 SFADVQ---KQYEGHPFYFCTTK-AAHIYADIAYTTDVFLVFGKETAGL-PKSLLAANEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
TIRIPM E R LNLS +V + YEA RQ N+ L A C
Sbjct: 116 H----TIRIPMQEG-ARSLNLSNAVAVVAYEALRQNNFVDLCLAGIGC 158
>gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter italicus Ab9]
gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
Length = 156
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVLV P+IP NTG IARTC + LHLV PLGF +++ +KRAGLDYWP + + V+
Sbjct: 3 LNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIEEKYVKRAGLDYWPLLDLTVYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F + +G+K LA TK H E+ Y Y++FG ET+GLP + E
Sbjct: 63 NLEQF---LEENKGKKFYLATTKAKRYYH-EVKYEDNSYILFGKETAGLPKWLI-----E 113
Query: 199 TFGGGTIRIPMVETY-VRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM E R LNLS SV I +YEA RQL + +K
Sbjct: 114 KYYEDCIRIPMHEVISTRSLNLSNSVAIVLYEALRQLGFPNMK 156
>gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18]
gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18]
Length = 161
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 10/161 (6%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+S K +VLV P+IP NTG IAR C A+ LHLVG LGF DD LKRAGLDYW V
Sbjct: 1 MSLQKPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
I+ W + + ++ E RL+ +K+ ++ E+S+ GD+++FG ET GL PE L
Sbjct: 61 DIRY---WEDL-EALKRAFPEGRLIYTSKKAPKSYLELSFHPGDFIVFGKETKGL-PEEL 115
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
++ ET ++RIP++ VR LNLS S GI +YEA RQ
Sbjct: 116 IEAHPET----SVRIPII-GRVRSLNLSTSAGIVLYEALRQ 151
>gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
DSM 1131]
gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
DSM 1131]
Length = 167
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 23/169 (13%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFDLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH-- 60
Query: 140 WAEFRDYF------------RQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGL 187
DYF Q E R+ A T +G +HS +SY++ DYL+FG ET GL
Sbjct: 61 ----HDYFAFLKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQENDYLMFGPETRGL 116
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
PP L + E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 117 PPYVLDNMPIEQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|187922547|ref|YP_001894189.1| RNA methyltransferase [Burkholderia phytofirmans PsJN]
gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
phytofirmans PsJN]
Length = 156
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD KL+RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ WA F ++ R+ AFT RG+ E +++ GD+ +FG+ET GLP L +
Sbjct: 61 ADWAAF--VAKESPDPARMFAFTTRGSGRFHEHAFQSGDWFVFGAETRGLPDSVLDQFAN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ +R+PM R LNLS +V I V+EA RQ +E
Sbjct: 119 QQ----RVRLPM-RPGNRSLNLSNTVAIVVFEAWRQTGFE 153
>gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-44]
gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-44]
Length = 162
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 93/161 (57%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
+ EF Y + +GE TK G H++ Y K Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNSDGE--FFYLTKYGEKAHTQFDYSNVEKNYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPM + VR LNLS + I +YEA RQ NY
Sbjct: 116 -EENF-DHCLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNY 153
>gi|386757565|ref|YP_006230781.1| rRNA methylase [Bacillus sp. JS]
gi|418034015|ref|ZP_12672492.1| rRNA methylase [Bacillus subtilis subsp. subtilis str. SC-8]
gi|430759325|ref|YP_007210403.1| RRNA methylase - like protein [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449093599|ref|YP_007426090.1| putative rRNA methylase [Bacillus subtilis XF-1]
gi|351470163|gb|EHA30339.1| rRNA methylase [Bacillus subtilis subsp. subtilis str. SC-8]
gi|384930847|gb|AFI27525.1| rRNA methylase [Bacillus sp. JS]
gi|430023845|gb|AGA24451.1| RRNA methylase - like protein [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449027514|gb|AGE62753.1| putative rRNA methylase [Bacillus subtilis XF-1]
Length = 160
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 93/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + + + + TK G H+ Y D + +FG ETSGLP + + +
Sbjct: 66 SLEELFEAYEKGQ----FFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNN 121
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 122 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160
>gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
14579]
gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L]
gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis
str. A2012]
gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0488]
gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0442]
gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0193]
gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0389]
gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0174]
gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Tsiankovskii-I]
gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
NVH0597-99]
gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB108]
gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
AH1134]
gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
H3081.97]
gi|217958083|ref|YP_002336627.1| TrmH family RNA methyltransferase [Bacillus cereus AH187]
gi|218234183|ref|YP_002365344.1| TrmH family RNA methyltransferase [Bacillus cereus B4264]
gi|218895602|ref|YP_002444013.1| TrmH family RNA methyltransferase [Bacillus cereus G9842]
gi|218901687|ref|YP_002449521.1| TrmH family RNA methyltransferase [Bacillus cereus AH820]
gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1]
gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB102]
gi|227816581|ref|YP_002816590.1| TrmH family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 4222]
gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 200]
gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
F65185]
gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock4-2]
gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-42]
gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-15]
gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
95/8201]
gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST26]
gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST24]
gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
4342]
gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
172560W]
gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
6E1]
gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
10876]
gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0248]
gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A1055]
gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Western North America USA6153]
gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Kruger B]
gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Vollum]
gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Australia 94]
gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171]
gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus cereus biovar anthracis
str. CI]
gi|365163583|ref|ZP_09359689.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp.
7_6_55CFAA_CT2]
gi|375282619|ref|YP_005103056.1| TrmH family RNA methyltransferase [Bacillus cereus NC7401]
gi|376264509|ref|YP_005117221.1| tRNA (cytosine34-2'-O-)-methyltransferase [Bacillus cereus F837/76]
gi|384178499|ref|YP_005564261.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|384184556|ref|YP_005570452.1| TrmH family RNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|386734392|ref|YP_006207573.1| TrmH family RNA methyltransferase [Bacillus anthracis str. H9401]
gi|402553920|ref|YP_006595191.1| TrmH family RNA methyltransferase [Bacillus cereus FRI-35]
gi|402562426|ref|YP_006605150.1| TrmH family RNA methyltransferase [Bacillus thuringiensis HD-771]
gi|410672845|ref|YP_006925216.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR [Bacillus
thuringiensis Bt407]
gi|421511458|ref|ZP_15958327.1| TrmH family RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|423357032|ref|ZP_17334633.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus IS075]
gi|423363699|ref|ZP_17341196.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD022]
gi|423376133|ref|ZP_17353465.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
AND1407]
gi|423387692|ref|ZP_17364944.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG1X1-2]
gi|423398565|ref|ZP_17375766.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG2X1-1]
gi|423409469|ref|ZP_17386618.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG2X1-3]
gi|423415631|ref|ZP_17392751.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG3O-2]
gi|423422714|ref|ZP_17399745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG3X2-2]
gi|423428577|ref|ZP_17405581.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG4O-1]
gi|423434158|ref|ZP_17411139.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG4X12-1]
gi|423507136|ref|ZP_17483719.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus HD73]
gi|423531455|ref|ZP_17507900.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB1-1]
gi|423553599|ref|ZP_17529926.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
ISP3191]
gi|423565182|ref|ZP_17541458.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
MSX-A1]
gi|423570406|ref|ZP_17546652.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
MSX-A12]
gi|423577664|ref|ZP_17553783.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
MSX-D12]
gi|423578878|ref|ZP_17554989.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD014]
gi|423590305|ref|ZP_17566368.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD045]
gi|423607683|ref|ZP_17583576.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD102]
gi|423613913|ref|ZP_17589772.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD107]
gi|423632455|ref|ZP_17608201.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD154]
gi|423638528|ref|ZP_17614180.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD156]
gi|423645722|ref|ZP_17621316.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD166]
gi|423646610|ref|ZP_17622180.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD169]
gi|423653425|ref|ZP_17628724.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD200]
gi|434373595|ref|YP_006608239.1| TrmH family RNA methyltransferase [Bacillus thuringiensis HD-789]
gi|449087278|ref|YP_007419719.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|452196853|ref|YP_007476934.1| tRNA (cytidine(34)-2'-O)-methyltransferase TrmL [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Ames]
gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
10987]
gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. 'Ames Ancestor']
gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Sterne]
gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L]
gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
str. Al Hakam]
gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0488]
gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0193]
gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0442]
gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0389]
gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0174]
gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. Tsiankovskii-I]
gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB108]
gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
NVH0597-99]
gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
AH1134]
gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
H3081.97]
gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1]
gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
03BB102]
gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. CDC 684]
gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
10876]
gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
6E1]
gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
172560W]
gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
4342]
gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST24]
gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST26]
gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
95/8201]
gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-15]
gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-42]
gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock4-2]
gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
F65185]
gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 200]
gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
IBL 4222]
gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. A0248]
gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis
BMB171]
gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar
anthracis str. CI]
gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
serovar chinensis CT-43]
gi|358351144|dbj|BAL16316.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
NC7401]
gi|363615352|gb|EHL66818.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp.
7_6_55CFAA_CT2]
gi|364510309|gb|AEW53708.1| tRNA (cytosine34-2'-O-)-methyltransferase [Bacillus cereus F837/76]
gi|384384244|gb|AFH81905.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
str. H9401]
gi|401074683|gb|EJP83079.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD022]
gi|401076075|gb|EJP84434.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus IS075]
gi|401089475|gb|EJP97643.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
AND1407]
gi|401095796|gb|EJQ03851.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG3O-2]
gi|401118699|gb|EJQ26528.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG3X2-2]
gi|401124323|gb|EJQ32087.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG4O-1]
gi|401126885|gb|EJQ34616.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG4X12-1]
gi|401183584|gb|EJQ90698.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
ISP3191]
gi|401194509|gb|EJR01485.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
MSX-A1]
gi|401204012|gb|EJR10836.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
MSX-A12]
gi|401204368|gb|EJR11185.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
MSX-D12]
gi|401219572|gb|EJR26226.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD014]
gi|401220602|gb|EJR27232.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD045]
gi|401240057|gb|EJR46462.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD102]
gi|401240084|gb|EJR46488.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD107]
gi|401261333|gb|EJR67495.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD154]
gi|401266329|gb|EJR72405.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD166]
gi|401270844|gb|EJR76863.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD156]
gi|401287119|gb|EJR92924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD169]
gi|401300446|gb|EJS06037.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD200]
gi|401627886|gb|EJS45742.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG1X1-2]
gi|401647043|gb|EJS64655.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG2X1-1]
gi|401655411|gb|EJS72943.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG2X1-3]
gi|401791078|gb|AFQ17117.1| TrmH family RNA methyltransferase [Bacillus thuringiensis HD-771]
gi|401795130|gb|AFQ08989.1| TrmH family RNA methyltransferase [Bacillus cereus FRI-35]
gi|401818503|gb|EJT17704.1| TrmH family RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|401872152|gb|AFQ24319.1| TrmH family RNA methyltransferase [Bacillus thuringiensis HD-789]
gi|402444338|gb|EJV76225.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB1-1]
gi|402444998|gb|EJV76875.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus HD73]
gi|409171974|gb|AFV16279.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR [Bacillus
thuringiensis Bt407]
gi|449021035|gb|AGE76198.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|452102246|gb|AGF99185.1| tRNA (cytidine(34)-2'-O)-methyltransferase TrmL [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 162
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF Y + ++GE TK G H+ Y K + Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNKDGE--FFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPM + VR LNLS + I +YEA RQ NY
Sbjct: 116 -EENF-DHCLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNY 153
>gi|379796210|ref|YP_005326209.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873201|emb|CCE59540.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 156
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 92/160 (57%), Gaps = 14/160 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF+ DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F GE LL TK G T+S + D Y IFG ET+GLP D
Sbjct: 64 IEAF---FETTSGEYYLL--TKFGKKTYSHFDFSSQDKDYYFIFGKETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E + +RIPM E ++R LNLS + + +YEA RQ ++
Sbjct: 114 KEKYQETALRIPMSE-HIRSLNLSNTAALLIYEALRQQDF 152
>gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 166
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC A+ LHL+ PLGFQ+++ LKRAG+DYW + + +
Sbjct: 4 LNIVLFEPEIPANTGNIGRTCVATGTRLHLIEPLGFQLNEKALKRAGMDYWKDLDV---T 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ ++D+ + G K +A TK T+ ++ Y + Y++FG E++G+P E LL+ E
Sbjct: 61 TYINYQDFLDRNPGAKVYMATTK-APKTYVDVEYEEDCYIMFGKESAGIPEEILLE-NQE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T IRIPM+ +R LNLS SV I +YEA RQ N++ ++
Sbjct: 119 T----AIRIPMIGD-IRSLNLSNSVAIVLYEALRQNNFDHMR 155
>gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
TW07627]
gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
TW07627]
Length = 157
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTTVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F + E +RL A T +GT HS +SY+ DYL+FG ET GL P +LD
Sbjct: 61 HDYSA----FLEAENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGL-PATILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 116 ---ADQKIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
Length = 160
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 93/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD L+RAGLDYW +V I +
Sbjct: 3 IHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLRRAGLDYWQFVEINYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
+ EF F + EG + TK G + HS Y K Y IFG ET+GLP E +
Sbjct: 63 SIEEF---FEKNEGGE-FYYLTKYGENVHSGYDYSNKEKDYYFIFGRETTGLPDEVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM R LNLS + I VYEA RQ +Y QL
Sbjct: 116 --ENNKDRCLRIPMNNN-ARSLNLSNTAAILVYEALRQQDYLQLN 157
>gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
Length = 167
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD +LKRAGLDYW V I H
Sbjct: 3 HIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A F D+ G + L +K +S++ Y D + IFG ET+GL PE+ + +
Sbjct: 63 LAAFMDFL----GARPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL-PESFMREHA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + +YE RQ + +L+
Sbjct: 118 EK----CLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPELE 156
>gi|432536020|ref|ZP_19772975.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE234]
gi|431057393|gb|ELD66836.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Escherichia
coli KTE234]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+R GLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRTGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS ++Y+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFR-AFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|126698145|ref|YP_001087042.1| tRNA/rRNA methyltransferase [Clostridium difficile 630]
gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26]
gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932]
gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42]
gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255]
gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55]
gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34]
gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79]
gi|260682266|ref|YP_003213551.1| RNA methylase [Clostridium difficile CD196]
gi|260685865|ref|YP_003216998.1| RNA methylase [Clostridium difficile R20291]
gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58]
gi|384359833|ref|YP_006197685.1| RNA methylase [Clostridium difficile BI1]
gi|423083242|ref|ZP_17071817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium difficile
002-P50-2011]
gi|423086616|ref|ZP_17075015.1| RNA methyltransferase, TrmH family, group 2 [Clostridium difficile
050-P50-2011]
gi|423091166|ref|ZP_17079424.1| RNA methyltransferase, TrmH family, group 2 [Clostridium difficile
70-100-2010]
gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630]
gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196]
gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291]
gi|357546325|gb|EHJ28256.1| RNA methyltransferase, TrmH family, group 2 [Clostridium difficile
050-P50-2011]
gi|357546343|gb|EHJ28273.1| RNA methyltransferase, TrmH family, group 2 [Clostridium difficile
002-P50-2011]
gi|357555448|gb|EHJ37098.1| RNA methyltransferase, TrmH family, group 2 [Clostridium difficile
70-100-2010]
Length = 156
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 97/163 (59%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG I RTCAA+ LHLV PLGF +DD LKR GLDYW I+ +
Sbjct: 3 LNIVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + + T + +HS++ Y + +++FG ET GL PE LL +
Sbjct: 63 SFEELQEKYPNS----KYFFSTTKAKQSHSDVKYEENCFIVFGKETKGL-PEPLLKANMD 117
Query: 199 TFGGGTIRIPMVET-YVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T IR+PM++ R LNLS SV I VYEA RQ+ Y ++
Sbjct: 118 T----CIRVPMLDVEKARSLNLSNSVAIVVYEALRQIGYPNMR 156
>gi|27468455|ref|NP_765092.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis SK135]
gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|417647239|ref|ZP_12297082.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU144]
gi|417656097|ref|ZP_12305788.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU028]
gi|417660171|ref|ZP_12309761.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU045]
gi|417910071|ref|ZP_12553802.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU037]
gi|417911399|ref|ZP_12555106.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU105]
gi|417913634|ref|ZP_12557298.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU109]
gi|418412205|ref|ZP_12985470.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis BVS058A4]
gi|418604406|ref|ZP_13167757.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU041]
gi|418607059|ref|ZP_13170314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU057]
gi|418608643|ref|ZP_13171827.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU065]
gi|418612711|ref|ZP_13175736.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU117]
gi|418618280|ref|ZP_13181159.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU120]
gi|418622493|ref|ZP_13185243.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU123]
gi|418624793|ref|ZP_13187457.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU125]
gi|418625879|ref|ZP_13188514.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU126]
gi|418628654|ref|ZP_13191188.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU127]
gi|418665065|ref|ZP_13226520.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU081]
gi|419768395|ref|ZP_14294521.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus IS-250]
gi|419772368|ref|ZP_14298403.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus IS-K]
gi|420165318|ref|ZP_14672017.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM088]
gi|420170497|ref|ZP_14677058.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM070]
gi|420173816|ref|ZP_14680305.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM067]
gi|420183466|ref|ZP_14689597.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM049]
gi|420186993|ref|ZP_14693016.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM039]
gi|420194598|ref|ZP_14700406.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM021]
gi|420198336|ref|ZP_14704050.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM020]
gi|420202701|ref|ZP_14708290.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM018]
gi|420205874|ref|ZP_14711386.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM008]
gi|420209307|ref|ZP_14714745.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM003]
gi|420212867|ref|ZP_14718211.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM001]
gi|420215483|ref|ZP_14720750.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH05005]
gi|420217591|ref|ZP_14722740.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH05001]
gi|420219468|ref|ZP_14724486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH04008]
gi|420221405|ref|ZP_14726336.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH08001]
gi|420226004|ref|ZP_14730828.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH06004]
gi|420227596|ref|ZP_14732362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH05003]
gi|420229912|ref|ZP_14734613.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH04003]
gi|420232355|ref|ZP_14736995.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH051668]
gi|420235011|ref|ZP_14739566.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH051475]
gi|421606703|ref|ZP_16047959.1| RNA methyltransferase [Staphylococcus epidermidis AU12-03]
gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis RP62A]
gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis SK135]
gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU144]
gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU045]
gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU028]
gi|341651773|gb|EGS75568.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU037]
gi|341653722|gb|EGS77489.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU105]
gi|341655108|gb|EGS78843.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU109]
gi|374404881|gb|EHQ75841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU041]
gi|374406067|gb|EHQ76971.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU057]
gi|374409553|gb|EHQ80339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU081]
gi|374410006|gb|EHQ80772.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU065]
gi|374816522|gb|EHR80726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU120]
gi|374817946|gb|EHR82119.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU117]
gi|374826520|gb|EHR90414.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU125]
gi|374826756|gb|EHR90641.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU123]
gi|374834463|gb|EHR98105.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU126]
gi|374836179|gb|EHR99769.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU127]
gi|383359558|gb|EID36980.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus IS-K]
gi|383360005|gb|EID37410.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Staphylococcus aureus
subsp. aureus IS-250]
gi|394235960|gb|EJD81508.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM088]
gi|394239441|gb|EJD84883.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM067]
gi|394240835|gb|EJD86258.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM070]
gi|394249178|gb|EJD94399.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM049]
gi|394256740|gb|EJE01666.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM039]
gi|394264421|gb|EJE09109.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM021]
gi|394264611|gb|EJE09289.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM020]
gi|394269058|gb|EJE13599.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM018]
gi|394277822|gb|EJE22140.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM001]
gi|394279001|gb|EJE23312.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM008]
gi|394279535|gb|EJE23843.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM003]
gi|394282251|gb|EJE26458.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH05005]
gi|394287686|gb|EJE31641.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH05001]
gi|394289124|gb|EJE33016.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH04008]
gi|394290689|gb|EJE34540.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH08001]
gi|394292915|gb|EJE36649.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH06004]
gi|394296794|gb|EJE40413.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH05003]
gi|394298596|gb|EJE42163.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH04003]
gi|394301395|gb|EJE44853.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH051668]
gi|394303726|gb|EJE47141.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIH051475]
gi|406657617|gb|EKC84000.1| RNA methyltransferase [Staphylococcus epidermidis AU12-03]
gi|410890219|gb|EKS38019.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis BVS058A4]
Length = 156
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF +D LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
EF F EG LL TK G T+S+ ++ + Y IFG ET+GLP +
Sbjct: 64 IEEF---FANTEGHYYLL--TKFGKQTYSDFNFSNTNEDYYFIFGKETTGLP-----EWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ +Y L
Sbjct: 114 KEKYAKTALRIPMSDN-IRSLNLSNTAALLIYEALRQQDYPNL 155
>gi|296137027|ref|YP_003644269.1| TrmH family RNA methyltransferase [Thiomonas intermedia K12]
gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
K12]
Length = 156
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R CA + C LHLV PLGF +DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W Q +RL AFT RG+ + + GDY +FG+ET GL D
Sbjct: 61 ASWDALMQTL--QPRPERLFAFTTRGSRLIGSVRFEPGDYFVFGAETRGLS-----DAVR 113
Query: 198 ETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +R+PM E R LNLS SV +AV+EA RQ Y
Sbjct: 114 EQFAPAQRLRLPMREGQ-RSLNLSNSVAVAVFEAWRQNGY 152
>gi|375361571|ref|YP_005129610.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|384264457|ref|YP_005420164.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|394992268|ref|ZP_10385055.1| hypothetical protein BB65665_07517 [Bacillus sp. 916]
gi|421732430|ref|ZP_16171553.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|429504391|ref|YP_007185575.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|451347792|ref|YP_007446423.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
gi|452854863|ref|YP_007496546.1| Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|371567565|emb|CCF04415.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380497810|emb|CCG48848.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|393806880|gb|EJD68212.1| hypothetical protein BB65665_07517 [Bacillus sp. 916]
gi|407074643|gb|EKE47633.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|429485981|gb|AFZ89905.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|449851550|gb|AGF28542.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
gi|452079123|emb|CCP20876.1| Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E F E K TK G H+ Y + + +FG ETSGLP E +
Sbjct: 63 SLEEL---FEAYENGK-FFFITKFGQKPHTSFDYSNTEEDFFFVFGRETSGLPKELI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ NY L
Sbjct: 116 --ENNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDL 156
>gi|344942086|ref|ZP_08781374.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
tundripaludum SV96]
gi|344263278|gb|EGW23549.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
tundripaludum SV96]
Length = 158
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + LHL+ PLGF++DD KL+RAGLDY +V +K H
Sbjct: 1 MFHIVLYEPEIPANTGNIIRLCANTGMQLHLIKPLGFELDDKKLRRAGLDYHEWVAVKEH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A+F D + R+ A T +GT +SE+S++ D +FG ET GLP L D S
Sbjct: 61 DSLADFVDSIK----PGRIFALTTKGTQIYSEVSFQPEDAFLFGPETRGLPATVLADLGS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E + +PM + R LNLS +V I +YEA RQ+++
Sbjct: 117 ER----CLYLPM-QAESRSLNLSNTVSIVLYEAWRQMDF 150
>gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
pseudomycoides DSM 12442]
gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock3-17]
gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock1-4]
gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock1-4]
gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
Rock3-17]
gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
pseudomycoides DSM 12442]
Length = 162
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF Y + ++GE TK G H+ Y K + Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNKDGE--FFYLTKYGEKAHTAFDYSKVEKDYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPM + VR LNLS + I +YEA RQ NY
Sbjct: 116 -EENF-DHCLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNY 153
>gi|419958657|ref|ZP_14474719.1| putative rRNA methylase [Enterobacter cloacae subsp. cloacae GS1]
gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|388606464|gb|EIM35672.1| putative rRNA methylase [Enterobacter cloacae subsp. cloacae GS1]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +R+ A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYAAFLG----SEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581]
gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM
2581]
Length = 162
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 98/160 (61%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG + R CA + LHL+ PLGF++DD +L+RAGLDY + ++VH
Sbjct: 1 MLDVVLFQPEIPPNTGNLIRLCANTGFRLHLIEPLGFELDDKRLRRAGLDYHEWARVRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W D F + +R+ A + RG + + E +Y GD L+FG ET GL P+A+LD
Sbjct: 61 RDW----DAFIEAVSPRRVFAVSTRGRTGYHEPAYGPGDALVFGPETRGL-PQAMLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R LNLS + I VYEA RQL++E
Sbjct: 116 E---AQRLRIPMLPES-RSLNLSNACAILVYEAWRQLDFE 151
>gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris]
Length = 166
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q R+ A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + V+EA RQL Y
Sbjct: 121 LDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42]
gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E F E K TK G H+ Y + + +FG ETSGLP E +
Sbjct: 63 SLEEL---FEAYENGK-FFFITKFGQKPHTSFDYSNTEEDFFFVFGRETSGLPKELI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ NY L
Sbjct: 116 --ENNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDL 156
>gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST196]
gi|423515321|ref|ZP_17491802.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuA2-4]
gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
weihenstephanensis KBAB4]
gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
BDRD-ST196]
gi|401167337|gb|EJQ74623.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuA2-4]
Length = 162
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 95/161 (59%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF Y + ++GE TK G H+ +Y K + Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNKDGE--FFYLTKYGEKAHTAFNYSKREKDYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPM + VR LNLS + I +YEA RQ NY
Sbjct: 116 -EENF-DHCLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNY 153
>gi|421728027|ref|ZP_16167184.1| rRNA methylase [Klebsiella oxytoca M5al]
gi|410371209|gb|EKP25933.1| rRNA methylase [Klebsiella oxytoca M5al]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + Q RL A T +GT HS +SY+ GD+L+FG ET GL P +LD
Sbjct: 61 RDYAAFIESAKPQ----RLFALTTKGTPAHSAVSYQDGDFLLFGPETRGL-PACILDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 116 PE---QKIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
anaerobius 653-L]
gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
anaerobius 653-L]
Length = 168
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 12/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTCA + LHL+ PLGF +DD LKR GLDYW IK +
Sbjct: 15 INIVLVEPEIPHNTGNIIRTCANTGAQLHLIKPLGFSLDDKHLKRCGLDYWDIADIKYYD 74
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + E T + +++++ Y +G +L+FG ET GLP + + E
Sbjct: 75 SFEELQEKY----PEANYFYATTKTQKSYADVEYNEGCFLVFGKETKGLPKDLI-----E 125
Query: 199 TFGGGTIRIPM--VETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G IRIPM +E RCLNLS SV I VYEA RQL + LK
Sbjct: 126 KNEGHCIRIPMRGIEG-ARCLNLSNSVAIVVYEALRQLGFPDLK 168
>gi|455645479|gb|EMF24539.1| rRNA methylase [Citrobacter freundii GTC 09479]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 PDYTS----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|404416666|ref|ZP_10998481.1| rRNA methylase [Staphylococcus arlettae CVD059]
gi|403490870|gb|EJY96400.1| rRNA methylase [Staphylococcus arlettae CVD059]
Length = 156
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IPGNTG IARTCA + LHL+ PLGF DD LKRAGLDYW V I H +
Sbjct: 4 HIVLFQPEIPGNTGSIARTCAGTYTNLHLIKPLGFSTDDKMLKRAGLDYWDSVNITYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
F F EG LL TK G T+S + + Y +FG ET+GLP D
Sbjct: 64 IEAF---FESTEGHYYLL--TKFGQQTYSTFDFSNTEEDHYFVFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +R+PM +R LNLS + I +YEA RQ NY L
Sbjct: 114 KEKYKDTALRMPMNNN-IRSLNLSNTASILIYEALRQQNYPDL 155
>gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris]
Length = 167
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q R+ A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + ++ IR+PM+ R +NLS +V + V+EA RQL Y
Sbjct: 121 LDNMPTQQ----KIRVPMLAD-SRSMNLSNTVAVVVFEAWRQLGY 160
>gi|429728988|ref|ZP_19263679.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
anaerobius VPI 4330]
gi|429146589|gb|EKX89640.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
anaerobius VPI 4330]
Length = 156
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 12/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTCA + LHL+ PLGF +DD LKR GLDYW IK +
Sbjct: 3 INIVLVEPEIPHNTGNIIRTCANTGAQLHLIKPLGFSLDDKHLKRCGLDYWDIADIKYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + E T + +++++ Y +G +L+FG ET GLP + + E
Sbjct: 63 SFEELQEKY----PEANYFYATTKTQKSYADVEYNEGCFLVFGKETKGLPKDLI-----E 113
Query: 199 TFGGGTIRIPM--VETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G IRIPM +E RCLNLS SV I VYEA RQL + LK
Sbjct: 114 KNEGHCIRIPMRGIEG-ARCLNLSNSVAIVVYEALRQLGFPDLK 156
>gi|408373129|ref|ZP_11170827.1| RNA methyltransferase [Alcanivorax hongdengensis A-11-3]
gi|407766967|gb|EKF75406.1| RNA methyltransferase [Alcanivorax hongdengensis A-11-3]
Length = 158
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L + L P+IP NTG I R A + LHL+ PLGF +D+ KL+RAGLDY ++ H
Sbjct: 1 MLHIALFEPEIPPNTGNIIRLAANTGAALHLIEPLGFSLDEKKLRRAGLDYRELAALETH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A FR+ GE+RLLA T +G+ HS++ +R D L+FG ET GLP L +
Sbjct: 61 TDFAA----FRRAMGERRLLAMTTKGSRPHSDVQFRDEDVLLFGPETRGLPATILESLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PMV R LNLS +V + +YEA RQL Y
Sbjct: 117 SQ----RLRLPMVADS-RSLNLSNAVAVTLYEAWRQLGY 150
>gi|385264007|ref|ZP_10042094.1| SpoU rRNA Methylase family protein [Bacillus sp. 5B6]
gi|387897397|ref|YP_006327693.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|385148503|gb|EIF12440.1| SpoU rRNA Methylase family protein [Bacillus sp. 5B6]
gi|387171507|gb|AFJ60968.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
amyloliquefaciens Y2]
Length = 160
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E F E K TK G H+ Y + + +FG ETSGLP E +
Sbjct: 66 SLEEL---FEAYENGK-FFFITKFGQKPHTSFDYSNTEEDFFFVFGRETSGLPKELI--- 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ NY L
Sbjct: 119 --ENNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDL 159
>gi|389774161|ref|ZP_10192308.1| putative rRNA methylase SpoU family protein [Rhodanobacter
spathiphylli B39]
gi|388438576|gb|EIL95321.1| putative rRNA methylase SpoU family protein [Rhodanobacter
spathiphylli B39]
Length = 157
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L +P+IP NTG + R CA + GLHL+ PLGF++DD +L+RAGLDY Y + VH
Sbjct: 1 MLHVILFNPEIPPNTGNVIRLCANTGAGLHLIRPLGFELDDARLRRAGLDYHEYARLAVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A D G R+ AFT RG H E + GD L+FG ET+GLP L +
Sbjct: 61 DDLASCLDAI----GAPRVFAFTTRGRVAHVEARFADGDALLFGCETAGLPAAVLEAIPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM R LNLS +V +AVYEA RQL +
Sbjct: 117 EQ----RLRLPM-RPDSRSLNLSNTVAVAVYEAWRQLGF 150
>gi|407473546|ref|YP_006787946.1| RNA methyltransferase SpoU [Clostridium acidurici 9a]
gi|407050054|gb|AFS78099.1| RNA methyltransferase SpoU [Clostridium acidurici 9a]
Length = 156
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IAR+CAA+ LHL+ PLGF +DD LKRAGLDYW + + V+
Sbjct: 3 VNIVLYQPEIPQNTGNIARSCAATGASLHLIKPLGFSIDDKHLKRAGLDYWSLLDLHVY- 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E D F ++ T +G +S+ ++ + ++IFG ET+GLP E L E
Sbjct: 62 ---ENIDEFFEKNSSGSFYFSTTKGVKNYSDFAFEENSFIIFGKETAGLPKEIL-----E 113
Query: 199 TFGGGTIRIPMVET-YVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ T+RIPMV R LNLS SV I +YEA RQ + L
Sbjct: 114 KYREKTMRIPMVNVEKARSLNLSNSVAIVLYEALRQQGFLNL 155
>gi|384430531|ref|YP_005639891.1| tRNA/rRNA methyltransferase SpoU [Thermus thermophilus
SG0.5JP17-16]
gi|333965999|gb|AEG32764.1| tRNA/rRNA methyltransferase (SpoU) [Thermus thermophilus
SG0.5JP17-16]
Length = 149
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 97/158 (61%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N G +ART AA LHL+ LGF + KLKRAGLDYWP+V +++H
Sbjct: 1 MLHLVLYQPEIPQNAGNVARTAAALGWPLHLIRSLGFLLSSPKLKRAGLDYWPHVDLRLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++A F + + R+ AF+ RG ++ E +R+GDY +FG E+ GLP E L
Sbjct: 61 DSFAAFLEALPRG---ARVFAFSARGEASLYEARFREGDYFLFGPESRGLPEEVLARFP- 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
T++IPM VR LNL+V+VG+A YEA RQL
Sbjct: 117 ------TLKIPMPGP-VRSLNLAVAVGVAAYEAYRQLT 147
>gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
SK119]
gi|418619715|ref|ZP_13182528.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
VCU122]
gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
SK119]
gi|374823922|gb|EHR87912.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
VCU122]
Length = 156
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F G+ LL TK G T+S+ + + Y IFG ET+GLP D
Sbjct: 64 IESF---FEVTNGKYYLL--TKFGKQTYSDFDFSNTEIENYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + +RIPM + ++R LNLS + + +YEA RQ N+ LK
Sbjct: 114 KEKYADTALRIPMSD-HIRSLNLSNTAALLIYEALRQQNFPGLK 156
>gi|436648131|ref|ZP_20516644.1| putative rRNA methylase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435030278|gb|ELM20314.1| putative rRNA methylase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
Length = 153
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 82 VLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWA 141
VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H +A
Sbjct: 1 VLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDYA 60
Query: 142 EFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFG 201
F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L E
Sbjct: 61 A----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ-- 114
Query: 202 GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 115 --KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 146
>gi|442319322|ref|YP_007359343.1| RNA methyltransferase [Myxococcus stipitatus DSM 14675]
gi|441486964|gb|AGC43659.1| RNA methyltransferase [Myxococcus stipitatus DSM 14675]
Length = 167
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 98/158 (62%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLVSPQIP NTG +AR CA + C L LV PLGF +DD +LKRAGLDYW V ++++
Sbjct: 9 LHLVLVSPQIPPNTGNVARLCAVTGCRLILVEPLGFSIDDRQLKRAGLDYWDKVFLRLYP 68
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+A + + + + R F+ R + E + +GD+L+FGSE +GL PE + T
Sbjct: 69 TYAAYVEAYP----DARRWLFSARAEQSLYEARFEEGDHLVFGSEVTGLLPEVMEGGTGT 124
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G IPM+E R +NLS +VG+ YEA RQ+ +
Sbjct: 125 ALG-----IPMLEGR-RSMNLSTAVGVGTYEALRQVCF 156
>gi|421451654|ref|ZP_15901015.1| 23S rRNA methyltransferase [Streptococcus salivarius K12]
gi|400182085|gb|EJO16347.1| 23S rRNA methyltransferase [Streptococcus salivarius K12]
Length = 184
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 20 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 79
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+F + QEG RL TK T+SE +Y G+ Y +FG E +GLP + + +
Sbjct: 80 LADFMS--KNQEG--RLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPE 135
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ +E L+ +
Sbjct: 136 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELS 175
>gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
C87]
gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
C87]
Length = 156
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 92/163 (56%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDCT 196
EF F EG LL TK G T+S+ + + Y IFG ET+GLP D
Sbjct: 64 IEEF---FDSTEGNYYLL--TKFGKQTYSDFDFTNTIENHYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ + L
Sbjct: 114 KEKYADTALRIPMSDK-IRSLNLSNTAALLIYEALRQQEFPNL 155
>gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|384158433|ref|YP_005540506.1| rRNA methylase [Bacillus amyloliquefaciens TA208]
gi|384163364|ref|YP_005544743.1| rRNA methylase [Bacillus amyloliquefaciens LL3]
gi|384167480|ref|YP_005548858.1| rRNA methylase [Bacillus amyloliquefaciens XH7]
gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208]
gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3]
gi|341826759|gb|AEK88010.1| putative rRNA methylase [Bacillus amyloliquefaciens XH7]
Length = 157
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E F E K TK G H+ Y + + +FG ETSGLP E +
Sbjct: 63 SLDEL---FEAYENGK-FFFITKFGQKPHTSFDYSNTEEDVFFVFGRETSGLPKELI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ NY L
Sbjct: 116 --ENNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDL 156
>gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
2048]
gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1272]
gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1271]
gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-29]
gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-28]
gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-3]
gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
R309803]
gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
gi|407708507|ref|YP_006832092.1| spore germination protein [Bacillus thuringiensis MC28]
gi|423370246|ref|ZP_17347674.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD142]
gi|423381485|ref|ZP_17358769.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG1O-2]
gi|423393071|ref|ZP_17370297.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG1X1-3]
gi|423404813|ref|ZP_17381986.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG2X1-2]
gi|423421358|ref|ZP_17398447.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG3X2-1]
gi|423444665|ref|ZP_17421570.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG4X2-1]
gi|423450492|ref|ZP_17427370.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG5O-1]
gi|423455902|ref|ZP_17432755.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG5X1-1]
gi|423461448|ref|ZP_17438245.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG5X2-1]
gi|423467603|ref|ZP_17444371.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6O-1]
gi|423473481|ref|ZP_17450223.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6O-2]
gi|423474551|ref|ZP_17451266.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6X1-1]
gi|423480623|ref|ZP_17457313.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6X1-2]
gi|423485769|ref|ZP_17462451.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BtB2-4]
gi|423491493|ref|ZP_17468137.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
CER057]
gi|423501714|ref|ZP_17478331.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
CER074]
gi|423508511|ref|ZP_17485042.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuA2-1]
gi|423526242|ref|ZP_17502693.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuA4-10]
gi|423537004|ref|ZP_17513422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB2-9]
gi|423542729|ref|ZP_17519118.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB4-10]
gi|423543961|ref|ZP_17520319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB5-5]
gi|423556539|ref|ZP_17532842.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus MC67]
gi|423596683|ref|ZP_17572709.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD048]
gi|423601996|ref|ZP_17577996.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD078]
gi|423620809|ref|ZP_17596619.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD115]
gi|423626312|ref|ZP_17602089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD148]
gi|423664521|ref|ZP_17639686.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
VDM022]
gi|423666342|ref|ZP_17641371.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
VDM034]
gi|423677611|ref|ZP_17652546.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
VDM062]
gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
R309803]
gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock1-3]
gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-28]
gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
Rock3-29]
gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1271]
gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
AH1272]
gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
2048]
gi|401074503|gb|EJP82902.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD142]
gi|401099280|gb|EJQ07289.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG3X2-1]
gi|401124877|gb|EJQ32638.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG5O-1]
gi|401133585|gb|EJQ41212.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG5X1-1]
gi|401136767|gb|EJQ44352.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG5X2-1]
gi|401147273|gb|EJQ54779.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6X1-2]
gi|401152613|gb|EJQ60045.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
CER074]
gi|401159745|gb|EJQ67126.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
CER057]
gi|401164544|gb|EJQ71878.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuA4-10]
gi|401168225|gb|EJQ75492.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB4-10]
gi|401185665|gb|EJQ92757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB5-5]
gi|401194906|gb|EJR01872.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus MC67]
gi|401219038|gb|EJR25705.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD048]
gi|401227953|gb|EJR34480.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD078]
gi|401246256|gb|EJR52605.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD115]
gi|401252866|gb|EJR59117.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus VD148]
gi|401292544|gb|EJR98199.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
VDM022]
gi|401305698|gb|EJS11231.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
VDM034]
gi|401306301|gb|EJS11802.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
VDM062]
gi|401629746|gb|EJS47558.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG1O-2]
gi|401632751|gb|EJS50536.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG1X1-3]
gi|401646250|gb|EJS63880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG2X1-2]
gi|402410187|gb|EJV42592.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG4X2-1]
gi|402413541|gb|EJV45884.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6O-1]
gi|402425350|gb|EJV57497.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6O-2]
gi|402438402|gb|EJV70415.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BAG6X1-1]
gi|402440921|gb|EJV72902.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
BtB2-4]
gi|402457807|gb|EJV89562.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuA2-1]
gi|402460586|gb|EJV92307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
HuB2-9]
Length = 162
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + +
Sbjct: 3 VHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF Y + ++GE TK G H+ Y K + Y +FG ET+GLP +
Sbjct: 63 SIEEF--YEKNKDGE--FFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPM + VR LNLS + I +YEA RQ NY
Sbjct: 116 -EENF-DHCLRIPMTDK-VRSLNLSNTAAILIYEAFRQQNY 153
>gi|402836957|ref|ZP_10885488.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Mogibacterium sp. CM50]
gi|402269973|gb|EJU19242.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Mogibacterium sp. CM50]
Length = 156
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLV P+IP NTG IARTCAA+ LHLV PLGF +D+ ++RAGLDYW YV + VH +
Sbjct: 4 HIVLVEPEIPQNTGNIARTCAATNTTLHLVKPLGFSIDEKSVRRAGLDYWRYVDVVVHGS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F F R+ T G +++ Y+ GD +FG ET+GLP + + +
Sbjct: 64 LMAFLGEF----PNARMFLSTTHGDRIYTDFKYKDGDMFLFGRETAGLPQKLISENRD-- 117
Query: 200 FGGGTIRIPMVE-TYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IRIPM E T +R LNL+ SV I ++EA RQ + +L
Sbjct: 118 ---SAIRIPMSENTRLRSLNLANSVNIVLFEALRQNGFPEL 155
>gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
Length = 207
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 95/163 (58%), Gaps = 13/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG I+RTCA + LH+V P GF++DD KLKRAGLDYW + I ++
Sbjct: 45 LNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAGLDYWDKLDIYYYN 104
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCT 196
D+F + +G FT +G HSE Y + Y+IFG E +GLP E L
Sbjct: 105 N---IEDFFAKNDGA--YFFFTTKGRQVHSEAVYPEDRPVYIIFGREDAGLPEELLYAHP 159
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM T +R LNLS SV IA YE RQ +Y L
Sbjct: 160 DE-----CVRIPMRNT-LRSLNLSNSVAIATYEVLRQWDYPDL 196
>gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 157
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 PDYAA----FVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA QL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWHQLGY 150
>gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase SpoU [Clostridium phytofermentans ISDg]
gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
Length = 166
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ ++L P+IP NTG I RTC A+ LHL+ PLGF++D+ ++KRAGLDYW + + V+
Sbjct: 1 MNIILFEPEIPANTGNIGRTCVATGTKLHLIEPLGFRLDEKEIKRAGLDYWKDLDVTVYE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+ R+ K +A TK ++E+SY +++FG E++G+P E LL+ E
Sbjct: 61 N---YDDFLRRNPNAKIYMATTK-ARHVYTEVSYEPDCFIMFGKESAGIPEEILLE-NKE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +IRIPM+ +R LNLS SV I +YEA RQ N++ ++
Sbjct: 116 T----SIRIPMIGD-IRSLNLSNSVAIVLYEALRQQNFDHMR 152
>gi|333897920|ref|YP_004471794.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333113185|gb|AEF18122.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 156
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVLV P+IP NTG IARTC + LHLV PLGF + + LKR+GLDYWPY+ +KV+
Sbjct: 3 INVVLVEPEIPQNTGNIARTCVLTGSKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF +G K LA TK G + E+ Y Y++FG E++GLP E
Sbjct: 63 NLEEF---LESTKGCKYYLATTK-GKHFYHEVKYEDESYILFGKESAGLP-----QWLRE 113
Query: 199 TFGGGTIRIPMVETYV-RCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM E R LNLS SV I VYEA +QL + +
Sbjct: 114 KYEDDCIRIPMNEVKAERSLNLSNSVAIVVYEALKQLGFPNM 155
>gi|402842000|ref|ZP_10890429.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Klebsiella sp. OBRC7]
gi|402281308|gb|EJU29998.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Klebsiella sp. OBRC7]
Length = 157
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFNLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + Q RL A T +GT HS + Y+ GD+L+FG ET GLP L +
Sbjct: 61 GDYAAFIESAKPQ----RLFALTTKGTPAHSAVCYQDGDFLLFGPETRGLPGSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|319795689|ref|YP_004157329.1| TrmH family RNA methyltransferase [Variovorax paradoxus EPS]
gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
EPS]
Length = 153
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 94/156 (60%), Gaps = 7/156 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLGF +DD L+RAGLDY Y +K H
Sbjct: 1 MFHIVLVHPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W D + R+ A T RGT ++ ++ GD+L+FGSETSGLPP A+ D +
Sbjct: 61 ADWQALIDA--ESAAADRMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPP-AVRDGFA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V + V+EA RQ
Sbjct: 118 EP---QRLRLPMREGQ-RSLNLSNAVAVTVFEAWRQ 149
>gi|452976022|gb|EME75838.1| tRNA(cytidine/uridine-2'-O-)-methyltransferase CspR [Bacillus
sonorensis L12]
Length = 157
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDY-LIFGSETSGLPPEALLDC 195
+ E D E + TK G H+ Y + DY +FG ET+GLP + +
Sbjct: 63 SLEELFD----AHPEGKFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPKDLI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ NY L
Sbjct: 116 --EQNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDL 156
>gi|420163960|ref|ZP_14670694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM095]
gi|420168463|ref|ZP_14675071.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM087]
gi|420185035|ref|ZP_14691138.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM040]
gi|394233086|gb|EJD78697.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM095]
gi|394233172|gb|EJD78780.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM087]
gi|394255818|gb|EJE00759.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis NIHLM040]
Length = 156
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF +D LKRAGLDYW +V I H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
EF F EG LL TK G T+S+ ++ + Y IFG ET+GLP +
Sbjct: 64 IEEF---FANTEGHYYLL--TKFGKQTYSDFNFSNTNEDYYFIFGKETTGLP-----EWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ +Y L
Sbjct: 114 KEKYVNTALRIPMSDN-IRSLNLSNTAALLIYEALRQQDYPNL 155
>gi|390933367|ref|YP_006390872.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568868|gb|AFK85273.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 156
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTC + LHLV PLGF +++ LKR+GLDYWPY+ +KV+
Sbjct: 3 INIVLVEPEIPQNTGNIARTCVLTGSKLHLVKPLGFSLNEKYLKRSGLDYWPYLDLKVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF +G K LA TK G + E+ Y Y++FG E++GLP E
Sbjct: 63 NLEEF---LESTKGCKYYLATTK-GKHFYHEVVYEDESYILFGKESAGLP-----QWLRE 113
Query: 199 TFGGGTIRIPMVETYV-RCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM E R LNLS SV I VYEA +QL + +
Sbjct: 114 KYEDDCIRIPMNEVKAERSLNLSNSVAIVVYEALKQLGFPNM 155
>gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
6192]
gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
6192]
Length = 154
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 92/154 (59%), Gaps = 10/154 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF ++D L+RAGLDYWP V ++VHS
Sbjct: 3 IHVVLHEPEIPQNTGNIARTCAATGAILHLIEPLGFSLEDRYLRRAGLDYWPMVDLRVHS 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W + F ++E L + RGT + + YL+FG ET+GLP L E
Sbjct: 63 SW----EAFLEEERPSSLFLLSTRGTRPYHVCEFPDETYLVFGKETAGLPARIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAAR 232
F +RIPM E R LNLS +V I VY A R
Sbjct: 114 AFPDRVVRIPMREG-ARSLNLSNAVAILVYAALR 146
>gi|85060160|ref|YP_455862.1| RNA methyltransferase [Sodalis glossinidius str. 'morsitans']
gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str.
'morsitans']
Length = 155
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 97/161 (60%), Gaps = 13/161 (8%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFHLHIIQPLGFTWDDKRLRRAGLDYHEFAAIRHH 60
Query: 138 STWAEFRDY--FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
RDY F Q + RL A T +G HS + Y+ GDYL+FG ET GLPP ++LD
Sbjct: 61 ------RDYAAFLAQAQQARLFALTTKGQPAHSAVRYQAGDYLLFGPETRGLPP-SILDA 113
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T IRIPM + R +NLS +V + VYEA RQL+Y
Sbjct: 114 LPMT---QKIRIPM-QPDSRSMNLSNAVSVVVYEAWRQLDY 150
>gi|413963777|ref|ZP_11403004.1| TrmH family RNA methyltransferase [Burkholderia sp. SJ98]
gi|413929609|gb|EKS68897.1| TrmH family RNA methyltransferase [Burkholderia sp. SJ98]
Length = 156
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 7/159 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y + VH+
Sbjct: 2 FNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMNVHA 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F ++ R+ AFT RG++ + ++R GD+ +FG+ET GL PE L +E
Sbjct: 62 DWDAF--IAKETPDATRMFAFTTRGSTPFFDHAFRPGDWFVFGAETRGLAPELLAHFATE 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V I +EA RQ +E
Sbjct: 120 Q----RVRLPM-RPGNRSLNLSNTVAIVTFEAWRQAGFE 153
>gi|373455989|ref|ZP_09547804.1| RNA methyltransferase, TrmH family, group 2 [Dialister
succinatiphilus YIT 11850]
gi|371934332|gb|EHO62126.1| RNA methyltransferase, TrmH family, group 2 [Dialister
succinatiphilus YIT 11850]
Length = 169
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 95/169 (56%), Gaps = 18/169 (10%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG I+R CAA LHLV PLGF +DD LKRAGLDYW + + VH
Sbjct: 1 MHIVLVEPEIPGNTGNISRLCAAEHLTLHLVEPLGFSIDDKHLKRAGLDYWDLLEVHVHP 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL----D 194
+F R +G T + ++++S+R+ D L+FG ET GLP + LL D
Sbjct: 61 ---DFSSVERMLKGH-HFYYNTTKAVKAYTQVSFREDDVLVFGKETKGLPEDMLLAHRED 116
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTAS 243
C IRIPM+E R LNLS +V I EA RQ + L S
Sbjct: 117 C---------IRIPMIEE-ARSLNLSNAVAIVALEALRQTGFPHLLKES 155
>gi|425074329|ref|ZP_18477432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425084965|ref|ZP_18488058.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405595794|gb|EKB69164.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405608380|gb|EKB81331.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
Length = 157
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + Q RL A T +GT HS +SY+ GD+ +FG ET GLP L
Sbjct: 61 ADYAAFVASAQPQ----RLFALTTKGTPAHSAVSYQDGDFFMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|295675360|ref|YP_003603884.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1002]
gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
CCGE1002]
Length = 156
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DDTK++RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W F ++ R+ AFT RG+ + +++ GD+ +FG+ET GLP L T+
Sbjct: 61 TDWDAF--IAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPDTVLERFTN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC
35469]
gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469]
Length = 157
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + E +RL A T +GT HS +SY+ DYL+FG ET GL L +
Sbjct: 61 HNYAA----FLKAENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLSSSILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
gi|357050940|ref|ZP_09112136.1| RNA methyltransferase [Enterococcus saccharolyticus 30_1]
gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
gi|355380565|gb|EHG27701.1| RNA methyltransferase [Enterococcus saccharolyticus 30_1]
Length = 167
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 93/167 (55%), Gaps = 19/167 (11%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H
Sbjct: 3 HIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKHLKRAGLDYWHDVHITYHKD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
A F + G++ L +K +SE+ Y + + +FG ET+GLP
Sbjct: 63 LAAFMSFL----GDRPLYLISKFANRVYSEVDYTTHEDQFFLFGKETTGLP--------- 109
Query: 198 ETF----GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
ETF +RIPM + +VR LNLS + + +YEA RQ + +L+
Sbjct: 110 ETFMREHADKCLRIPMNDAHVRSLNLSNTAALIIYEALRQQGFPELE 156
>gi|383458007|ref|YP_005371996.1| RNA methyltransferase [Corallococcus coralloides DSM 2259]
gi|380732450|gb|AFE08452.1| RNA methyltransferase [Corallococcus coralloides DSM 2259]
Length = 167
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLVSPQIP NTG +AR CA + C L LV PLGF +DD LKRAGLDYW V +K++
Sbjct: 9 LHLVLVSPQIPPNTGNVARLCAVTGCRLILVEPLGFSIDDRNLKRAGLDYWDKVFLKLYP 68
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ D + + + R F+ R ++ + GD+L+FGSE +GL PE + E
Sbjct: 69 TY----DAYVAEYPQARRWLFSARAETSLYAARFEPGDHLVFGSEVTGLLPEVM-----E 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTAS 243
G + IPM+ R LNLS SVGI YEA RQ+ QL TA+
Sbjct: 120 GGTGTPVTIPMLPER-RSLNLSTSVGIGAYEALRQV---QLGTAA 160
>gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens D str. JGS1721]
gi|422345976|ref|ZP_16426890.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens WAL-14572]
gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens D str. JGS1721]
gi|373227190|gb|EHP49510.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens WAL-14572]
Length = 153
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LH++ P+GF +DD LKRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ +F + G+K++ T + E+ Y +G +++FG E++G+P + +
Sbjct: 63 SYEDFMKKY----GDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPE----NVHNA 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G I++PM+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 115 HHG---IKVPMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|387891124|ref|YP_006321422.1| RNA methyltransferase [Escherichia blattae DSM 4481]
gi|414594529|ref|ZP_11444165.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia blattae
NBRC 105725]
gi|386925957|gb|AFJ48911.1| RNA methyltransferase [Escherichia blattae DSM 4481]
gi|403194524|dbj|GAB81817.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Escherichia blattae
NBRC 105725]
Length = 157
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFHLHIIEPMGFTWDDKRLRRAGLDYHEFAAVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + + +RL A T +GT HS + Y+ GDYL+FG ET GLP L
Sbjct: 61 HDYAA----FLESQQPQRLFALTTKGTPAHSAVQYQDGDYLMFGPETRGLPATILDALPK 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 117 EQ----KIRIPMLPD-SRSMNLSNSVAVVVFEAWRQLGY 150
>gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 154
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYK 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F + G + F+ +G +++ Y YL+FG ET+GLP +
Sbjct: 63 ---DLNDFFEKNRG-ANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS SV I +YEA RQL + L
Sbjct: 119 TY-----RIPMIND-VRSLNLSNSVAIVLYEALRQLGFPNL 153
>gi|417127395|ref|ZP_11974886.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
97.0246]
gi|386144698|gb|EIG91164.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
97.0246]
Length = 157
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF D +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWGDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+FR F + E +RL A T +GT HS ++Y+ GDYL+FG ET GLP L +
Sbjct: 61 H---DFRA-FLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
Length = 153
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 10/156 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL+ PQIP NTG I R C A+ LHLVG LGF ++D LKRAGLDYW + +V+
Sbjct: 5 LHVVLIEPQIPYNTGNIGRLCVATNSKLHLVGKLGFSLNDKYLKRAGLDYWSLLDYEVYK 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
F D+ + EG R + ++E+SY++GDYLIFG+E G+P E + E
Sbjct: 65 N---FEDFLEKNEG-GRFIFVEFPAFKLYTEVSYQEGDYLIFGAEDYGIPREII-----E 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ ++ IPM VR LNLS SV I VYEA RQ+
Sbjct: 116 RYWENSVSIPMFGP-VRSLNLSSSVAIVVYEALRQI 150
>gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
Length = 150
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 11/159 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL++P+IP NTG I R S C LHLV P GF++DDT+LKRAGLDYW ++ ++ +
Sbjct: 1 MLNIVLINPEIPNNTGNIGRLALGSGCRLHLVKPFGFKIDDTRLKRAGLDYWQHLDVQYY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAF-TKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
D+F++ K +AF + GT +H +I + + +L+FG E+ GLP E
Sbjct: 61 DNT---EDFFKKNAFAK--MAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKE-----I 110
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+E +IP+ ++R LNL+ +VGI YE RQLN
Sbjct: 111 TEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149
>gi|398898578|ref|ZP_10648444.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM50]
gi|398184141|gb|EJM71601.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM50]
Length = 151
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E L S
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQLGFK 151
>gi|415915865|ref|ZP_11553912.1| Putative tRNA/rRNA methyltransferase [Herbaspirillum frisingense
GSF30]
gi|407761609|gb|EKF70638.1| Putative tRNA/rRNA methyltransferase [Herbaspirillum frisingense
GSF30]
Length = 169
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHLV PLGF +DD K++RAGLDY Y ++VH
Sbjct: 10 LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 69
Query: 138 STWAEFRDYFRQ--QEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
W F + R+ Q E R+ A T G++ + +++R GD +FGSET GL PE
Sbjct: 70 PDWDSFLAHRREDPQFDETRMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPE----- 124
Query: 196 TSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E+F IR+PM R +NLS +V + VYEA RQ Y+
Sbjct: 125 RRESFPTTQRIRLPM-RPGNRSINLSNTVAVVVYEAWRQNGYD 166
>gi|375091531|ref|ZP_09737821.1| RNA methyltransferase, TrmH family, group 2 [Helcococcus kunzii
ATCC 51366]
gi|374563394|gb|EHR34713.1| RNA methyltransferase, TrmH family, group 2 [Helcococcus kunzii
ATCC 51366]
Length = 155
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 8/161 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+I GNT I RTC + LHL+ P GF + D ++RAGLDYW +V + +H
Sbjct: 2 LNIVLFEPEIAGNTANIGRTCFLTNTRLHLIRPFGFSITDKMMRRAGLDYWEHVDLVLHD 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F D+ + +E + L T T H+++SY+ GDY++FGSE+ G + D +
Sbjct: 62 S---FEDFLKYKEEDANLFLATTHATKFHTDVSYKDGDYIMFGSESKG-----VYDYIHK 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+I+IPM R LNL S I +YEA RQ+ +E +
Sbjct: 114 QLEDSSIKIPMRSDSDRSLNLGNSANIVLYEAYRQIGFEHM 154
>gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 152
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+Q+VLV P+IP NTG IARTCA + LHLV PLGF + D LKRAGLDYW V +++
Sbjct: 1 MQIVLVEPEIPQNTGNIARTCALTKTALHLVKPLGFSLADRFLKRAGLDYWDKVEVQL-- 58
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F D G LA T+ G + H ++SY + +L+FG E+SGLP L +
Sbjct: 59 -WESFGDLLEANPGAAFYLATTRAGQAYH-QVSYPQDSWLVFGRESSGLPISIL-----K 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+F IRIPM + R LNLS SV I +YEA RQ ++ L+
Sbjct: 112 SFPDTQIRIPM-QDIGRSLNLSNSVAIILYEALRQNSFPGLR 152
>gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
hydrothermalis 108]
Length = 154
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYK 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F + G + F+ +G +++ Y YL+FG ET+GLP +
Sbjct: 63 ---DLNDFFEKNRG-ANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS SV I +YEA RQL + L
Sbjct: 119 TY-----RIPMISD-VRSLNLSNSVAIVLYEALRQLGFPNL 153
>gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
ATCC 10379]
gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
ATCC 10379]
Length = 157
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTC + LHL+ PLGF +DD +KRAGLDYW ++ + V
Sbjct: 3 NIVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVV--- 59
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD----YLIFGSETSGLPPEALLDC 195
W F D F + +K TK GT + + + D Y IFG ET GLP E
Sbjct: 60 WDSF-DEFLEATNDKHYYLITKFGTKNYCDFDFSNTDNEDIYFIFGRETKGLPKEF---- 114
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + +RIPM E VR LNLS + + +YEA RQ N+ +LK
Sbjct: 115 -REKYSEQALRIPMSEN-VRSLNLSNTAALIIYEALRQQNFNKLK 157
>gi|334132089|ref|ZP_08505850.1| Putative RNA methyltransferase [Methyloversatilis universalis FAM5]
gi|333442735|gb|EGK70701.1| Putative RNA methyltransferase [Methyloversatilis universalis FAM5]
Length = 161
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 90/160 (56%), Gaps = 5/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG + R CA LHLV PLGF + D LKRAG+DY V + VH
Sbjct: 1 MFHIVLYQPEIPPNTGNVMRLCANGGFSLHLVKPLGFDISDRHLKRAGMDYRDLVNMTVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
WA D Q + RL A + RG + H++ YR GD +FG ET+GL P+ALLD
Sbjct: 61 ENWAALADALALQPDDGRLYALSTRGRTPHTQPQYRAGDIFLFGQETAGL-PQALLDTVP 119
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM R LNLS SV I YEA RQ ++
Sbjct: 120 EA---QRLRIPM-RPDSRSLNLSNSVAIVAYEAWRQHGFD 155
>gi|408484313|ref|ZP_11190532.1| TrmH family RNA methyltransferase [Pseudomonas sp. R81]
Length = 151
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ ++S+ +GD +FG E+ GLP E +LD
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSQPFHDVSFAEGDAFLFGPESRGLPAE-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ G +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 116 D---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kronotskyensis 2002]
gi|344997123|ref|YP_004799466.1| TrmH family RNA methyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
kronotskyensis 2002]
gi|343965342|gb|AEM74489.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
lactoaceticus 6A]
Length = 154
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYK 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F + G + F+ +G +++ Y YL+FG ET+GLP +
Sbjct: 63 ---DLNDFFEKNRG-ANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS SV I +YEA RQL + L
Sbjct: 119 TY-----RIPMISD-VRSLNLSNSVAIVLYEALRQLGFPNL 153
>gi|92115317|ref|YP_575245.1| RNA methyl transferase TrmH [Chromohalobacter salexigens DSM 3043]
gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
DSM 3043]
Length = 164
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG + R CA + LHL+ PLGF +DD +L+RAGLDY + +KVH
Sbjct: 1 MLDIVLFEPEIPPNTGNLIRLCANTGFRLHLIEPLGFALDDKRLRRAGLDYHEWARVKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W F + + R+LA + RG + + E++YR+GD L+FG ET GL P+A+LD
Sbjct: 61 ADWRAFLESVQP----ARVLAVSTRGRTGYHEVAYREGDALVFGPETRGL-PQAMLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIPM+ R LNLS + I V+EA RQL +
Sbjct: 116 P---AQRLRIPMLPDS-RSLNLSNACAILVFEAWRQLEF 150
>gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase SpoU [Krokinobacter sp. 4H-3-7-5]
gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter sp. 4H-3-7-5]
Length = 150
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 11/159 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL++P+IP NTG I R S C LHLV P GF++DDT+LKRAGLDYW ++ ++ +
Sbjct: 1 MLNIVLINPEIPNNTGNIGRLALGSGCKLHLVKPFGFEIDDTRLKRAGLDYWQHLDVQYY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAF-TKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
D+F + K +AF + GT +H +I + + +L+FG E+ GLP E
Sbjct: 61 DNT---EDFFNKNAFAK--MAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKE-----I 110
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+E +IP+ ++R LNL+ +VGI YE RQLN
Sbjct: 111 TEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149
>gi|401564587|ref|ZP_10805469.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Selenomonas
sp. FOBRC6]
gi|400188689|gb|EJO22836.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Selenomonas
sp. FOBRC6]
Length = 165
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 95/168 (56%), Gaps = 10/168 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMELHLVRPLGFSTDDRHLKRAGLDYWHLVKVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A+ + RQ EG TK +S+I Y L+FG ET+GL PE+LL E
Sbjct: 61 SFADVQ---RQYEGHPFYFCTTK-SAHIYSDIRYTSDALLVFGKETAGL-PESLLAANEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
TIRIPM R LNLS + + YEA RQ + +L A C
Sbjct: 116 H----TIRIPM-HAGARSLNLSNAAAVVAYEALRQNAFAELCLAGTGC 158
>gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168]
gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168]
Length = 159
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F E +R+ A T +GT HS +SY++GDYL+FG ET GLP L +
Sbjct: 61 HDYAA----FLAAEKPQRIFALTTKGTPAHSVVSYQQGDYLLFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQ Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQSGY 150
>gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase SpoU [Magnetococcus marinus MC-1]
gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus marinus MC-1]
Length = 174
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 96/164 (58%), Gaps = 9/164 (5%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
+ L VVL P+IP NTG I R CAA+ LHLVGP+ F++D+ LKRAG+DY +V ++
Sbjct: 19 DTLLHVVLYRPEIPPNTGNIQRICAATGAMLHLVGPIAFRLDNAALKRAGMDYRQWVDVQ 78
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
+ WA R Q R + + + T + + Y+ GD L+FGSE SGLP E
Sbjct: 79 RYDDWAHC---LRMQPLGVRWIPISTKATQGYHTMRYQAGDRLLFGSEGSGLPAE----- 130
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ G +R+PM+ R LNL+ +V + +YEA RQLNY ++
Sbjct: 131 IHQALGHNAVRVPMLPR-ARSLNLANTVAVVLYEALRQLNYPEM 173
>gi|409407985|ref|ZP_11256429.1| tRNA/rRNA methyltransferase [Herbaspirillum sp. GW103]
gi|386432441|gb|EIJ45268.1| tRNA/rRNA methyltransferase [Herbaspirillum sp. GW103]
Length = 160
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHLV PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
Query: 138 STWAEFRDYFRQ--QEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
W F + R Q E R+ A T G++ + +++R GD +FGSET GL PE
Sbjct: 61 KDWDSFLAHRRADPQFDEARMFAMTTHGSTPFAGLAFRPGDSFVFGSETRGLAPE----- 115
Query: 196 TSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E+F IR+PM R +NLS +V + VYEA RQ Y+
Sbjct: 116 RRESFPTAQRIRLPM-RPGNRSINLSNTVAVVVYEAWRQNGYD 157
>gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
33394]
gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
33394]
Length = 174
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
N VVL P+IP NTG I R CA + C LHLV PLGF +D +K+KRAGLDY + +
Sbjct: 19 NNMFTVVLYQPEIPPNTGNIIRLCANTGCSLHLVKPLGFPLDSSKMKRAGLDYHEFARLT 78
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
VH W E Q +R+ A T +GT+ + +++ GD +FG ET GLP E +LD
Sbjct: 79 VHENWEE----CMQALAGRRIFALTTKGTARPDKAAFQAGDVFVFGPETRGLPAE-ILDT 133
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IR PM+ R +NLS +V + V+EA RQ NY
Sbjct: 134 LPEN---QKIRFPMLPDN-RSMNLSNTVAVTVFEAWRQQNY 170
>gi|429085524|ref|ZP_19148495.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter condimenti
1330]
gi|426545350|emb|CCJ74536.1| tRNA (cytosine34-2'-O-)-methyltransferase [Cronobacter condimenti
1330]
Length = 157
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + +
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F + Q RL A T +GT HS +SY+ GDYL+FG ET GLP L
Sbjct: 61 HDYAAFLEAVSPQ----RLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1]
Length = 165
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 10/167 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGFQ+++ +LKRAGLDYW + +
Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVAAGARLHLIEPLGFQINEKQLKRAGLDYWDKLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+T+ F D+ + G K +A TK ++++ + Y++FG E++G+P E L+D
Sbjct: 58 TTYVNFEDFLAKNPGAKIYMATTK-ARKKYTDVKFEDDAYIMFGKESAGIPEEILVD--- 113
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
+ +IRIPM +R LNL SV I +YEA RQ ++ L+ A +
Sbjct: 114 --YKDTSIRIPMFPD-IRSLNLGNSVAIVLYEALRQNDFPGLEEAGN 157
>gi|422016692|ref|ZP_16363272.1| methyltransferase [Providencia burhodogranariea DSM 19968]
gi|414092458|gb|EKT54135.1| methyltransferase [Providencia burhodogranariea DSM 19968]
Length = 167
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 23/169 (13%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH-- 60
Query: 140 WAEFRDYFRQQEGE------------KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGL 187
DYF E E R+ A T +G +HS +SY++ DYL+FG ET GL
Sbjct: 61 ----HDYFAFLESEGLNPDNNQSATGARVFALTTKGKPSHSNVSYQQDDYLMFGPETRGL 116
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
PP L + E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 117 PPYVLDNMPIEQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
Length = 156
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ WA F ++ R+ AFT RG+ E +++ GD+ +FG+ET GLP L
Sbjct: 61 ADWAAF--IAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDPVLGQFAD 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQTGFE 153
>gi|410995971|gb|AFV97436.1| tRNA/rRNA methyltransferase SpoU [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 156
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV+PQIP NTG I R C + LHL+ P+GF +D+ ++RAGLDYW + + V
Sbjct: 1 MFNIVLVTPQIPNNTGAIGRLCVNTGSSLHLIKPIGFDIDEKAVRRAGLDYWHKIDLHV- 59
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W D+ +R T + + E+ +++GDYL+FGSETSG+P + L
Sbjct: 60 --WENIDDFMNAHPNTERFFFATTKTDRPYFELDFKEGDYLLFGSETSGIPRDIL----- 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E+F T+ IPM + R LNL++S GI +YEA +Q
Sbjct: 113 ESFPNQTMTIPMTKE-GRSLNLAISSGIILYEAIKQ 147
>gi|340398102|ref|YP_004727127.1| tRNA/rRNA methyltransferase yibK [Streptococcus salivarius CCHSS3]
gi|387762032|ref|YP_006069009.1| TrmH family RNA methyltransferase [Streptococcus salivarius 57.I]
gi|338742095|emb|CCB92600.1| uncharacterized tRNA/rRNA methyltransferase yibK [Streptococcus
salivarius CCHSS3]
gi|339292799|gb|AEJ54146.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
salivarius 57.I]
Length = 169
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 101/165 (61%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 5 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+F + Q+G RL TK T+SE +Y G+ Y +FG E +GLP + + +
Sbjct: 65 LADFMS--KNQDG--RLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ +E L+ +
Sbjct: 121 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELS 160
>gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
SK14]
gi|417906407|ref|ZP_12550195.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
VCU116]
gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
SK14]
gi|341597947|gb|EGS40470.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
VCU116]
Length = 156
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 92/163 (56%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDCT 196
EF F +G LL TK G T+S+ + + Y IFG ET+GLP D
Sbjct: 64 IEEF---FDSTKGNYYLL--TKFGKQTYSDFDFSNTLENHYFIFGRETTGLP-----DWI 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ + L
Sbjct: 114 KEKYADTALRIPMSDK-IRSLNLSNTAALLIYEALRQQEFPNL 155
>gi|326803147|ref|YP_004320965.1| TrmH family RNA methyltransferase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
ACS-120-V-Col10a]
Length = 178
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 15/167 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LHL+ PLGFQ DD LKRAGLDYW + I H
Sbjct: 4 HIVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFQTDDKHLKRAGLDYWDALDITYHDD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY----RKGD--YLIFGSETSGLPPEALL 193
F +Y +G + L +K T +++I Y ++G+ +L+FG ET+GL PEA +
Sbjct: 64 LKAFINYL---DG-RPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGL-PEAFM 118
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM +T+VRCLNLS I +YE RQ + L+
Sbjct: 119 ----HEHEDQCLRLPMDDTHVRCLNLSNCAAICIYEVLRQQAFNDLE 161
>gi|427701848|ref|YP_007045070.1| rRNA methylase SpoU family [Cyanobium gracile PCC 6307]
gi|427345016|gb|AFY27729.1| putative rRNA methylase SpoU family [Cyanobium gracile PCC 6307]
Length = 163
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 14/161 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVL PQIP NTG +ARTCAA+ C LHL+ PLGF + D L+RAGLDYWP+V + H
Sbjct: 3 RVVLYQPQIPPNTGNVARTCAATGCELHLIEPLGFSISDRHLRRAGLDYWPWVSLHRHGD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
F+ R + G RL+A + + + +++ + D+L+FG ET GLP L ++E
Sbjct: 63 LERFQTVRRGRGG--RLVALSSQAETAYTDFRFHPDDWLLFGRETDGLP--NALQASAEA 118
Query: 200 FGGGTIRIPMV------ETYVRCLNLSVSVGIAVYEAARQL 234
+ IPM VR LNLSVSVGI ++EA RQ+
Sbjct: 119 ----RLTIPMACRAREDRGGVRSLNLSVSVGIVLFEALRQI 155
>gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68]
gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
gi|386578519|ref|YP_006074925.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
gi|386580592|ref|YP_006076997.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis JS14]
gi|386582664|ref|YP_006079068.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis SS12]
gi|386584722|ref|YP_006081125.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis D9]
gi|386588788|ref|YP_006085189.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis A7]
gi|403062136|ref|YP_006650352.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis S735]
gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14]
gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
gi|353734810|gb|AER15820.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis SS12]
gi|353736868|gb|AER17877.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis D9]
gi|354985949|gb|AER44847.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis A7]
gi|402809462|gb|AFR00954.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis S735]
Length = 181
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + ++ +
Sbjct: 16 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDN 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
AEF DY +Q R+ +K T+S+ Y G+ Y +FG E GLP + + +
Sbjct: 76 LAEFMDYASKQ---GRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLPEDFMREHPE 132
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM + +VR LN+S + + VYEA RQ + L
Sbjct: 133 K-----AIRIPMNDEHVRSLNVSNTACMIVYEALRQQQFAGL 169
>gi|429736058|ref|ZP_19269976.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156178|gb|EKX98815.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 163
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 96/168 (57%), Gaps = 10/168 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMELHLVRPLGFSTDDRHLKRAGLDYWHLVKVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++A+ + RQ EG TK +S++ Y L+FG ET+GL PE+LL E
Sbjct: 61 SFADVQ---RQYEGHPFYFCTTK-SAHIYSDVRYTSDALLVFGKETAGL-PESLLAANEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
TIRIPM R LNLS +V + YEA RQ ++ +L C
Sbjct: 116 H----TIRIPM-HAGARSLNLSNAVAVVAYEALRQNSFAELCLEGTGC 158
>gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
Length = 151
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E +LD
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAE-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ G +R+PM E R LNLS +V +AVYE RQL+++
Sbjct: 116 D---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLDFK 151
>gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
AHT2]
gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
AHT2]
Length = 164
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVLV P+IP NTG IAR C A+ LHLV PLGF++DD LKRAGLDYW + I W
Sbjct: 19 VVLVEPEIPPNTGSIARLCGATDTILHLVHPLGFKIDDKHLKRAGLDYWDQIKI---VNW 75
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
++ D F + E+RL +K+ ++E+ ++ GD+L+FG ET GLP E L +
Sbjct: 76 SDL-DAFLTAQDEQRLHFLSKKADRLYTEVRFQPGDFLVFGKETKGLPEETL-----ALY 129
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
IPM +R +NL+ + + +YEA RQ
Sbjct: 130 ADRCCAIPMSNPAIRSINLAQAAAVVLYEAIRQ 162
>gi|15893988|ref|NP_347337.1| tRNA-methylase [Clostridium acetobutylicum ATCC 824]
gi|337735916|ref|YP_004635363.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum DSM 1731]
gi|384457425|ref|YP_005669845.1| tRNA-methylase [Clostridium acetobutylicum EA 2018]
gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum
ATCC 824]
gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018]
gi|336292930|gb|AEI34064.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum DSM 1731]
Length = 160
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW + + ++
Sbjct: 8 LNIVLFQPEIPQNTGNIARTCVLTNSKLHLIKPLGFSLDEKHLRRAGLDYWKDLDLSLYD 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E R+ ++ + T G + ++ + +GD++IFG E+ GLP E E
Sbjct: 68 SYDELREKYK----DSTFYFSTTHGNGFYDDVKFNQGDFIIFGRESCGLPDE-----IRE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IR+PMV+T R LNLS +V I YEA RQ + +K
Sbjct: 119 SDPDRCIRVPMVKTSTRSLNLSNTVAIVAYEAIRQFGFPNMK 160
>gi|365140969|ref|ZP_09346874.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
sp. 4_1_44FAA]
gi|424931235|ref|ZP_18349607.1| tRNA cytidine(34)-2'-O--methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|425083723|ref|ZP_18486820.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425093836|ref|ZP_18496920.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428935553|ref|ZP_19009021.1| rRNA methylase [Klebsiella pneumoniae JHCK1]
gi|363653211|gb|EHL92194.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
sp. 4_1_44FAA]
gi|405598215|gb|EKB71444.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405610332|gb|EKB83136.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407805422|gb|EKF76673.1| tRNA cytidine(34)-2'-O--methyltransferase [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|426300298|gb|EKV62590.1| rRNA methylase [Klebsiella pneumoniae JHCK1]
Length = 157
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + ++ +
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F + Q RL A T +GT HS +SY+ GD+L+FG ET GLP L
Sbjct: 61 ADYAAFVASAQPQ----RLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPM+ R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMMPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101]
gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
perfringens SM101]
Length = 153
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LH++ P+GF +DD LKRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ + F ++ G+K++ T + E+ Y + +++FG E++G+P D +
Sbjct: 63 SYED----FMKKYGDKKIYLSTTHAEDHYDEVKYEEEAFIMFGRESAGVPE----DVHNA 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G I++PM+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 115 HHG---IKVPMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|407802672|ref|ZP_11149512.1| RNA methyltransferase [Alcanivorax sp. W11-5]
gi|407023308|gb|EKE35055.1| RNA methyltransferase [Alcanivorax sp. W11-5]
Length = 154
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L + L P+IP NTG + R A + C LHL+ PLGF ++D L+RAGLDY +VH
Sbjct: 1 MLHIALFEPEIPPNTGNVMRLAANTGCQLHLIAPLGFVLEDKLLRRAGLDYRDQATTRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + GE+RL AFT RG+ +SE + D L+FG E+ GLP ALLD S
Sbjct: 61 DHWEAFAAWL----GERRLWAFTTRGSHCYSEARFAAEDVLLFGPESRGLPV-ALLDTLS 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PMV R LNLS SV +AVYEA RQ+ ++
Sbjct: 116 AE---QKLRLPMVAGS-RSLNLSNSVSVAVYEAWRQMGFQ 151
>gi|376261967|ref|YP_005148687.1| rRNA methylase [Clostridium sp. BNL1100]
gi|373945961|gb|AEY66882.1| rRNA methylase, putative, group 2 [Clostridium sp. BNL1100]
Length = 164
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG I RTCAA+ LHLVGPLGF ++D LKRAGLDYW ++ ++
Sbjct: 3 LNIVLVEPEIPQNTGNIVRTCAATGTVLHLVGPLGFSIEDKYLKRAGLDYWDEADVRYYN 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ EF + F K T + + + ++ + +++FG ET+GLP E L +
Sbjct: 63 SLDEFFEKFPG----KTFYYSTTKAVNNYCDVQFDDDSFILFGKETAGLPEELLRENKEY 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM + +R LNLS SV I +YEA RQ N++++K
Sbjct: 119 -----CIRIPMKNS-IRSLNLSNSVAIVLYEALRQQNFKEMK 154
>gi|433446961|ref|ZP_20410731.1| tRNA(cytidine/uridine-2'-O-)-methyltransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000170|gb|ELK21072.1| tRNA(cytidine/uridine-2'-O-)-methyltransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 157
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW YV + +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATGTSLHLIRPLGFSTDDKMLKRAGLDYWEYVNVHYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDC 195
+ E + ++ E + TK G ++ Y K + +FG ETSGLP + L++
Sbjct: 63 SLQELFEKYK----EGQFFFITKFGEKYYTSFDYSDQTKDYFFVFGRETSGLPKD-LIEN 117
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +RIPM E YVR LNLS + I VYEA RQ N+
Sbjct: 118 NMER----CLRIPMNE-YVRSLNLSNTAAILVYEALRQQNF 153
>gi|407682293|ref|YP_006797467.1| tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'English
Channel 673']
gi|407698688|ref|YP_006823475.1| tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'Black Sea
11']
gi|407243904|gb|AFT73090.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'English Channel 673']
gi|407247835|gb|AFT77020.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'Black Sea 11']
Length = 154
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF+ DD +++RAGLDY + +K H
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ D + KR+ A T +G + HS++SY+KGD LIFG ET GLP + +
Sbjct: 61 ASL----DAYLNDAKPKRVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDYIQSLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R +NLS +V + VYE+ RQ YE
Sbjct: 117 EQ----RVRIPMLPD-SRSMNLSNAVSVFVYESWRQFGYE 151
>gi|418017125|ref|ZP_12656684.1| tRNA/rRNA methyltransferase yibK [Streptococcus salivarius M18]
gi|345527818|gb|EGX31126.1| tRNA/rRNA methyltransferase yibK [Streptococcus salivarius M18]
Length = 169
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 99/165 (60%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 5 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+F R E RL TK T+SE +Y G+ Y +FG E +GLP + + +
Sbjct: 65 LADFMSKNR----EGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ +E L+ +
Sbjct: 121 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELS 160
>gi|417092289|ref|ZP_11957023.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis R61]
gi|353532858|gb|EHC02527.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis R61]
Length = 181
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 10/156 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + ++ +
Sbjct: 16 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDN 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
AEF DY +Q R+ +K T+S+ Y G+ Y +FG E GLP + + +
Sbjct: 76 LAEFMDYASKQ---GRVHLVSKFAEKTYSDEDYNDGNIHYFLFGREDKGLPEDFMREHPE 132
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ IRIPM + +VR LN+S + + VYEA RQ
Sbjct: 133 K-----AIRIPMNDEHVRSLNVSNTACMIVYEALRQ 163
>gi|410722901|ref|ZP_11362153.1| putative rRNA methylase SpoU family [Clostridium sp. Maddingley
MBC34-26]
gi|410603720|gb|EKQ58147.1| putative rRNA methylase SpoU family [Clostridium sp. Maddingley
MBC34-26]
Length = 153
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 98/162 (60%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF++++ +++RAGLDYW + +++H
Sbjct: 3 LNIVLYEPEIPQNTGNIARTCVLTNSKLHLIKPLGFEINEKQVRRAGLDYWKDLELEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ +F + + G + T E+S+++GD+++FG E+SG+P E +
Sbjct: 63 SYEDFMNKY----GHNTIYLSTTHADKHFDEVSFKEGDFIMFGRESSGVPQEVHHRHSG- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
R+PM+++ R LNLS +V I YEA RQ+ + +K
Sbjct: 118 ------FRVPMIKSSARSLNLSNTVAIVAYEALRQIGFPNMK 153
>gi|419706867|ref|ZP_14234374.1| rRNA methyltransferase, TrmH family [Streptococcus salivarius PS4]
gi|383283295|gb|EIC81252.1| rRNA methyltransferase, TrmH family [Streptococcus salivarius PS4]
Length = 184
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 105/184 (57%), Gaps = 19/184 (10%)
Query: 61 FMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTK 120
FM R + + N +VL P+IP NTG IARTCAA+ LH++ P+GF +DD K
Sbjct: 9 FMSRRIAMSRN--------HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKK 60
Query: 121 LKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YL 178
+KRAGLDYW + I + A+F + Q G RL TK T+S+ SY G Y
Sbjct: 61 MKRAGLDYWDKLDITYYDNSADFMS--KNQLG--RLHLVTKFADKTYSDESYDDGKDHYF 116
Query: 179 IFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
+FG E +GLP E + + + IRIPM + +VR LN+S +V + VYEA RQ +E
Sbjct: 117 MFGREDTGLPEEFMREHAEK-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEG 171
Query: 239 LKTA 242
L+ +
Sbjct: 172 LELS 175
>gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016]
gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 157
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 5 LNIVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYD 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E R+ ++ T G + + ++ D+++FG E+ GL P+ + D E
Sbjct: 65 CYEELRERYKNGT----FYFSTTHGKNFYQHAKFKDEDFIVFGKESCGL-PDKIRDSNPE 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IR+PM++T R LNLS +V I VYEA RQL++ +K
Sbjct: 120 K----NIRLPMIKTTTRSLNLSNAVAIVVYEALRQLDFPNMK 157
>gi|389686467|ref|ZP_10177788.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
chlororaphis O6]
gi|399009903|ref|ZP_10712304.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM17]
gi|425897028|ref|ZP_18873619.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388549928|gb|EIM13200.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
chlororaphis O6]
gi|397884048|gb|EJL00534.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398109348|gb|EJL99285.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM17]
Length = 151
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E L +
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQLGFK 151
>gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
684]
gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
684]
Length = 158
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VLV P+IP NTG IAR CA + LHLVG LGF +DD LKRAGLDYWP+V +
Sbjct: 7 HIVLVEPEIPPNTGNIARLCAGTQTHLHLVGKLGFSLDDRYLKRAGLDYWPHVPLH---R 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W + Q E R +K HS+ ++ GD+++FG ET GLP E L E
Sbjct: 64 WDSL-EQLEQAYPEGRWWYTSKTAHLVHSQATFHPGDFIVFGKETKGLPKELL-----ER 117
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+RIPM VR LNLS S GI +YEA RQ+
Sbjct: 118 HPQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQV 152
>gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
Length = 155
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LHL+ PLGF +D+ L+RAGLDYW Y+ + ++
Sbjct: 3 LNIVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E R+ ++ T G + + ++ D+++FG E+ GL P+ + D E
Sbjct: 63 CYEELRERYKNGT----FYFSTTHGKNFYQHAKFKDEDFIVFGKESCGL-PDKIRDSNPE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IR+PM++T R LNLS +V I VYEA RQL++ +K
Sbjct: 118 K----NIRLPMIKTTTRSLNLSNAVAIVVYEALRQLDFPNMK 155
>gi|424920936|ref|ZP_18344297.1| rRNA methylase [Pseudomonas fluorescens R124]
gi|404302096|gb|EJZ56058.1| rRNA methylase [Pseudomonas fluorescens R124]
Length = 151
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + ++ GD IFG E+ GLPPE L +
Sbjct: 61 ADLASCLESL----GNPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|421470718|ref|ZP_15919077.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
multivorans ATCC BAA-247]
gi|400227098|gb|EJO57117.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
multivorans ATCC BAA-247]
Length = 156
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+S + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAESPAPARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R +NLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSMNLSNTVAVVVFEAWRQAGFE 153
>gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase SpoU [Sphaerochaeta globus str. Buddy]
gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerochaeta globus str.
Buddy]
Length = 166
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTCAA LHLV PLGF + + L+RAGLDYWP + +
Sbjct: 3 LHIVLFEPEIPQNTGNIARTCAAVGATLHLVHPLGFSLSEKHLRRAGLDYWPLLTL---C 59
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+A ++F+++ GE L FT + +++E++Y + YL+FG E++G+P L++
Sbjct: 60 EYANVDEFFQKKSGEN-LYFFTTKAKHSYTELTYPEETYLVFGKESAGIPESILVE---- 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+RIPM + R LNLS SV IA YE RQ + L T
Sbjct: 115 -HQKTCVRIPM-RSQARSLNLSNSVAIATYEYLRQAQFSDLST 155
>gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
30120]
gi|422020389|ref|ZP_16366928.1| methyltransferase [Providencia alcalifaciens Dmel2]
gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
30120]
gi|414101525|gb|EKT63124.1| methyltransferase [Providencia alcalifaciens Dmel2]
Length = 167
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 92/163 (56%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHD 62
Query: 140 WAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
+ F + Q R+ A T +G +HS +SYR+ DYL+FG ET GLPP L
Sbjct: 63 YYAFLESEGLNPDNNQSPTGARVFALTTKGKPSHSNVSYREDDYLMFGPETRGLPPYVLD 122
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ E IRIPM+ R +NLS SV + V+E RQL Y
Sbjct: 123 NMPIEQ----KIRIPMLAE-SRSMNLSNSVAVVVFETWRQLGY 160
>gi|399002195|ref|ZP_10704884.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM18]
gi|398125280|gb|EJM14764.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM18]
Length = 151
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V IAVYEA RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAIAVYEAWRQLGFK 151
>gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13]
gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 153
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 96/162 (59%), Gaps = 11/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTC + LH++ P+GF +DD LKRAGLDYW + +++H
Sbjct: 3 LNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ +F + G+K++ T + E+ Y +G +++FG E++G+P D +
Sbjct: 63 SYEDFMKKY----GDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPE----DVHNA 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G I++ M+ T R LNLS +V I YEA RQ+ + +K
Sbjct: 115 HHG---IKVQMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK 153
>gi|410622608|ref|ZP_11333440.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Glaciecola
pallidula DSM 14239 = ACAM 615]
gi|410157867|dbj|GAC28814.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Glaciecola
pallidula DSM 14239 = ACAM 615]
Length = 157
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ L PQI NTG R C+ + C LHL+ PLGF +++ +L+RA LDY + +H
Sbjct: 1 MFHIALFEPQIAPNTGNAIRLCSNNGCHLHLIEPLGFSMEEKQLRRASLDYRDLANVTIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F Q+ G +R+ A T +G+ H E +YR GD L+FGSETSGLP D +
Sbjct: 61 KNY----DAFLQEMGNRRIFALTTKGSIPHDEPNYRAGDVLLFGSETSGLPD----DIRN 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G IRIPM+ R LNLS S+ I YEA RQL +
Sbjct: 113 AFAPGNRIRIPMLAN-ARSLNLSNSIAIVSYEAWRQLGF 150
>gi|375107500|ref|ZP_09753761.1| rRNA methylase, putative, group 2 [Burkholderiales bacterium
JOSHI_001]
gi|374668231|gb|EHR73016.1| rRNA methylase, putative, group 2 [Burkholderiales bacterium
JOSHI_001]
Length = 162
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 7/161 (4%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
+ +VLV P+IP NTG + R A + C LHL+ PLGF +DD L+RAGLDY Y +K
Sbjct: 2 HAMFNIVLVHPEIPPNTGNVIRLAANTGCRLHLIEPLGFDMDDKLLRRAGLDYHEYAEVK 61
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
H+ WA ++ + R+ AFT RGT ++ ++ GD+L+FGSET+GL P AL D
Sbjct: 62 RHADWAAWQAA--ETPDPARVFAFTTRGTRHLGQVRFQPGDWLLFGSETAGL-PAALRDS 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ +R+P+ E R LNLS +V +AV+EA RQ Y
Sbjct: 119 VAPA---QRLRLPLREGQ-RSLNLSNAVAVAVFEAWRQNGY 155
>gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
F0415]
gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
F0415]
Length = 182
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 101/162 (62%), Gaps = 12/162 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCAA+ LH++ P+GF ++D K+KRAGLDYW + I+ + +
Sbjct: 19 HVVLFEPQIPANTGNIARTCAATNSPLHIIRPMGFPINDRKMKRAGLDYWDKLDIRFYDS 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
EF D + +G+ L+ +K T+SE++Y + Y IFG E GLP + + + +
Sbjct: 79 LLEFLD---KCQGQVHLV--SKFAQKTYSEVNYADDQDHYFIFGREDKGLPEDFMREHVT 133
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM + +VR LNLS +V + VYEA RQ ++ L
Sbjct: 134 K-----AIRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFANL 170
>gi|302392645|ref|YP_003828465.1| TrmH family RNA methyltransferase [Acetohalobium arabaticum DSM
5501]
gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
arabaticum DSM 5501]
Length = 152
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF D+ ++RAGLDYW V + +
Sbjct: 1 MNIVLYQPEIPPNTGNIARTCACTGASLHLIRPLGFSTDEKAVRRAGLDYWDKVDVNYYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + + TK + ++EI Y+ D+L+FG ET+GLP E +E
Sbjct: 61 SFRELEEKY----SDHNFYFATKFASKFYTEIEYKSDDFLVFGQETAGLPEE-----ITE 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM++ VR LNL+ SV I +YEA RQ ++ L
Sbjct: 112 RYKENCIRIPMLKE-VRALNLANSVSIILYEALRQNGFDNL 151
>gi|447919502|ref|YP_007400070.1| TrmH family RNA methyltransferase [Pseudomonas poae RE*1-1-14]
gi|445203365|gb|AGE28574.1| TrmH family RNA methyltransferase [Pseudomonas poae RE*1-1-14]
Length = 151
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP E +LD
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFADGDAFLFGPESRGLPAE-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E G +R+PM E R LNLS +V +AVYE RQL +
Sbjct: 116 E---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGF 150
>gi|421493065|ref|ZP_15940423.1| hypothetical protein MU9_1593 [Morganella morganii subsp. morganii
KT]
gi|455737707|ref|YP_007503973.1| SpoU family rRNA methyltransferase [Morganella morganii subsp.
morganii KT]
gi|400192693|gb|EJO25831.1| hypothetical protein MU9_1593 [Morganella morganii subsp. morganii
KT]
gi|455419270|gb|AGG29600.1| SpoU family rRNA methyltransferase [Morganella morganii subsp.
morganii KT]
Length = 167
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60
Query: 138 STWAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
+ F + Q R+ A T +GT HS +SY+ GDYL+FG ET GLPP
Sbjct: 61 HDYYAFLESEGLSSDNAQSPTGNRVFALTTKGTPRHSNVSYQAGDYLLFGPETRGLPPYV 120
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + + IR+PM+ R +NLS +V + V+E RQL+Y
Sbjct: 121 LDNMPVDQ----KIRVPMLPN-SRSMNLSNTVAVIVFETWRQLDY 160
>gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp.
Marseille]
Length = 165
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 9/162 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHLV PLGF +DD K++RAGLDY Y +KVH
Sbjct: 6 LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 65
Query: 138 STWAEFRDYF--RQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
+ W F + F Q +R+ A T G++ + ++++ GD +FGSET GL
Sbjct: 66 ADWQAFLNSFPAEQPLNHERMFALTTHGSTPFASMAFQPGDVFVFGSETKGLE-----TS 120
Query: 196 TSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E+F IR+PM R LNLS +V + VYEA RQ N+
Sbjct: 121 LRESFPPSQRIRLPMRPDN-RSLNLSNTVAVVVYEAWRQNNF 161
>gi|422021177|ref|ZP_16367690.1| methyltransferase [Providencia sneebia DSM 19967]
gi|414099646|gb|EKT61285.1| methyltransferase [Providencia sneebia DSM 19967]
Length = 167
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHD 62
Query: 140 WAEFRDY------FRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
+ F + Q R+ A T +G +HS +S+++ DYL+FG ET GLPP L
Sbjct: 63 YYAFLESEGLSPDNHQSATGARIFALTTKGKPSHSNVSFQQNDYLMFGPETRGLPPYVLD 122
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ E IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 123 NMPIEQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 160
>gi|386586791|ref|YP_006083193.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis D12]
gi|353738937|gb|AER19945.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis D12]
Length = 181
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + ++ +
Sbjct: 16 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDN 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
AEF DY +Q R+ +K T+S+ Y G+ Y +FG E GLP + + +
Sbjct: 76 LAEFMDYASKQ---GRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLPEDFMREHPE 132
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM +VR LN+S + + VYEA RQ + L
Sbjct: 133 K-----AIRIPMNNEHVRSLNVSNTACMIVYEALRQQQFAGL 169
>gi|425738541|ref|ZP_18856802.1| TrmH family RNA methyltransferase [Staphylococcus massiliensis S46]
gi|425479419|gb|EKU46595.1| TrmH family RNA methyltransferase [Staphylococcus massiliensis S46]
Length = 156
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 14/164 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL P+IP NTG IARTCAA+ LHL+ PLGF DD L+RAGLDYW +V I + +
Sbjct: 4 HVVLYQPEIPANTGNIARTCAATNTKLHLIKPLGFSTDDKMLRRAGLDYWKFVDITYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
F F Q +G+ LL TK G+ H+ + K Y IFG ET+GLP
Sbjct: 64 IEAF---FEQTDGDYFLL--TKFGSKPHTTQDFGDVSKDYYFIFGKETTGLPS-----WV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + +R+PM + VR LNLS + I +YEA RQ +Y +++
Sbjct: 114 KEKYENTALRLPMTDN-VRALNLSNTAAILIYEALRQQDYPEIQ 156
>gi|398892062|ref|ZP_10645272.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM55]
gi|398185957|gb|EJM73343.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM55]
Length = 151
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP E L S
Sbjct: 61 ADLASCLESL----GNPRLFAFTTKGSRPFHDASFVPGDAFLFGPESRGLPAEVLDALPS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ N++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNNFK 151
>gi|385207089|ref|ZP_10033957.1| rRNA methylase, putative, group 2 [Burkholderia sp. Ch1-1]
gi|385179427|gb|EIF28703.1| rRNA methylase, putative, group 2 [Burkholderia sp. Ch1-1]
Length = 156
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W F ++ R+ AFT RG+ E +++ GD+ +FG+ET GLP L S
Sbjct: 61 ADWPAF--IAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDLVLDQFAS 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQTGFE 153
>gi|407686213|ref|YP_006801386.1| tRNA/rRNA methyltransferase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289593|gb|AFT93905.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 154
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF+ DD +++RAGLDY + +K H
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ D + KR+ A T +G + HS++SY+KGD LIFG ET GLP + +
Sbjct: 61 ASL----DAYLNDARPKRVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDYIQSLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R +NLS +V + VYE+ RQ YE
Sbjct: 117 EQ----RVRIPMLPD-SRSMNLSNAVSVFVYESWRQFGYE 151
>gi|365840178|ref|ZP_09381379.1| RNA methyltransferase, TrmH family, group 2 [Anaeroglobus geminatus
F0357]
gi|364562233|gb|EHM40101.1| RNA methyltransferase, TrmH family, group 2 [Anaeroglobus geminatus
F0357]
Length = 166
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +V+V P+IPGNTG I+R CAA+ LHLV PLGF ++D LKRAGLDYW + ++VH
Sbjct: 6 MHIVMVEPEIPGNTGNISRLCAANHITLHLVKPLGFSLEDRYLKRAGLDYWDLLRLEVHE 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+A + + + R T + +++I++ D L+FG ET GLP E L
Sbjct: 66 NFAA----LQMKYPDNRYFYLTTKAERCYADIAFLPEDMLVFGKETKGLPEELLKANREH 121
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
F RIPM++ R LNLS +V I YEA RQL++ L
Sbjct: 122 CF-----RIPMIDE-ARSLNLSNAVAIVSYEALRQLDFPDL 156
>gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD1]
gi|421477635|ref|ZP_15925448.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
multivorans CF2]
gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans ATCC 17616]
gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
17616]
gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD1]
gi|400226205|gb|EJO56296.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
multivorans CF2]
Length = 156
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+S + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAESPDPARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPA 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R +NLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSMNLSNTVAVVVFEAWRQAGFE 153
>gi|452993277|emb|CCQ95247.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Clostridium
ultunense Esp]
Length = 155
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTC+ + LHL+ PLGF V+D LKRAGLDYW V I +
Sbjct: 3 INIVLVEPEIPQNTGNIVRTCSLTNTVLHLIKPLGFSVEDKYLKRAGLDYWNLVEIHYYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + G K T +G + +++I+Y Y++FG ET GL P+ +LD +
Sbjct: 63 NFDE----LILKHGNKDFFYATTKGKNYYTDINYLDDSYIVFGKETKGL-PDKILDKNWD 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
TI+IPM + R LNLS SV I ++EA RQL + L+
Sbjct: 118 K----TIKIPMKQGIKRSLNLSNSVNIILFEALRQLGFPHLE 155
>gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
gi|158450229|gb|EDP27224.1| putative RNA methyltransferase, TrmH family, group 2 [Coprococcus
eutactus ATCC 27759]
Length = 166
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 10/167 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGFQ+++ +LKRAGLDYW + +
Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVAAGARLHLIEPLGFQINEKQLKRAGLDYWDKLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+T+ F D+ + G K +A TK ++++ + Y++FG E++G+P E L+D
Sbjct: 58 TTYVNFEDFLAKNPGAKIYMATTK-ARKKYTDVRFEDDAYIMFGKESAGIPEEILVD--- 113
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
+ IRIPM +R LNL SV I +YEA RQ ++ L+ A +
Sbjct: 114 --YKDTAIRIPMFPD-IRSLNLGNSVAIVLYEALRQNDFPGLEEAGN 157
>gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
alkaliphilus AHT 1]
gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
alkaliphilus AHT 1]
Length = 152
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 95/155 (61%), Gaps = 10/155 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG ++RTCA + LHLV P+GF +++ +LKRAGLDYW ++ ++VH
Sbjct: 1 MHIVLVEPEIPPNTGNVSRTCAVTGTTLHLVEPMGFSIEERQLKRAGLDYWQHLNLQVHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F DY ++ + +G ++++I Y K D L+FG ET+GLP D
Sbjct: 61 SLEHFLDY----ATDRNCWFLSTKGKQSYTDIKYHKDDLLVFGRETAGLP-----DWLLA 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +RIPM VR LNLS SV I +YEA RQ
Sbjct: 112 RYPQKCVRIPMGPD-VRSLNLSNSVAIVLYEALRQ 145
>gi|422343743|ref|ZP_16424670.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas noxia
F0398]
gi|355378159|gb|EHG25350.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas noxia
F0398]
Length = 164
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 10/164 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGMDLHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++++ R +Q +G TK +S+I Y + +FG ET GL PE+LL+ E
Sbjct: 61 SFSDVR---KQYKGHPFYFCTTK-AAHIYSDIVYTSDAFFVFGKETEGL-PESLLEDNEE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
T+RIPM + R LNLS +V + YEA RQ + L+ A
Sbjct: 116 H----TVRIPM-QAGARSLNLSNAVAVVAYEALRQNAFVDLRLA 154
>gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
gi|387891569|ref|YP_006321866.1| TrmH family RNA methyltransferase [Pseudomonas fluorescens A506]
gi|388470264|ref|ZP_10144473.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas synxantha
BG33R]
gi|423689446|ref|ZP_17663966.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
fluorescens SS101]
gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
gi|387160767|gb|AFJ55966.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
fluorescens A506]
gi|388000349|gb|EIK61678.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
fluorescens SS101]
gi|388006961|gb|EIK68227.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas synxantha
BG33R]
Length = 151
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E +LD
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAE-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ G +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 116 D---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 159
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 6/159 (3%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +V P+IP NTG IARTC + LHL+ PLGF VD + LKRAGLDYW V I +
Sbjct: 2 LNIVFYEPEIPFNTGAIARTCGLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYYK 61
Query: 139 TWAEFRDYFRQQEGEKRLLAF-TKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ +F + + + L F T + ++++ ++ GDY++FG ET G+P L +
Sbjct: 62 SYDDFLEKNEDEMKDGASLYFATTKAEQKYTDVKFKDGDYIMFGPETRGIPESILFNDIE 121
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
I+IPM++ Y R LNLS S I ++EA RQL++
Sbjct: 122 H-----CIKIPMLKDYGRSLNLSNSANIILFEALRQLDF 155
>gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1]
gi|398975317|ref|ZP_10685465.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM25]
gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1]
gi|398140541|gb|EJM29503.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM25]
Length = 151
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + ++ GD IFG E+ GLPPE L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|398982745|ref|ZP_10689652.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM24]
gi|399011538|ref|ZP_10713869.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM16]
gi|398117686|gb|EJM07432.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM16]
gi|398158198|gb|EJM46554.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM24]
Length = 151
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + ++ GD IFG E+ GLPPE L
Sbjct: 61 ADLASCLESL----GNPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 154
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +V P+IP NTG IARTC + LHL+ PLGF VDD+ LKRAGLDYW V I +
Sbjct: 2 LNIVFYEPEIPFNTGAIARTCGLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYYD 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + + + ++++ Y+ GD+++FG ET GLP + +
Sbjct: 62 SYDE----LVEKYPDSNFYLASTKAKKKYTDVEYKDGDFIVFGPETRGLPEDLIFANYD- 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM++ + R LNLS S I ++EA RQL++ L+
Sbjct: 117 ----NAIRIPMLKDFGRSLNLSNSANIILFEALRQLDFFDLE 154
>gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
Length = 160
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF +D L+RAGLDYW +V I +
Sbjct: 6 VHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTEDKMLRRAGLDYWEHVTIVYYD 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ EF F + G + TK G HS+ Y D + IFG ET+GLP + +
Sbjct: 66 SLDEF---FEKNAGGE-FFYLTKYGEIPHSDFDYSSVDKDYFFIFGRETTGLPKDVI--- 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM E VR LNLS + I VYEA RQ N+ L+
Sbjct: 119 --ENNKDRALRIPMNEN-VRSLNLSNTAAILVYEALRQQNFLHLR 160
>gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54]
gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila
LSv54]
Length = 165
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IAR C A+ LHLV PLGF DD L+RAGLDYW +V I
Sbjct: 15 LNIVLVEPEIPPNTGSIARLCGATNAILHLVHPLGFSTDDKHLRRAGLDYWKFVNI---V 71
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F + Q + + + FT + +++E +++GD+LIFG ET GL P+ +LD +
Sbjct: 72 YWESFEAFLSQCDKDN-MYFFTTKTEKSYTEAKFKQGDFLIFGKETKGL-PKPILDLHPD 129
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ +PM +R LNL+++ GI +YEA RQ+
Sbjct: 130 R----CLTLPMPNPNIRSLNLAMTAGIVLYEAMRQV 161
>gi|398857568|ref|ZP_10613267.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM79]
gi|398240849|gb|EJN26517.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM79]
Length = 151
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E L S
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|406595364|ref|YP_006746494.1| tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC 27126]
gi|406372685|gb|AFS35940.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC
27126]
Length = 154
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF+ DD +++RAGLDY + +K H
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D + KR+ A T +G + HS++SY KGD LIFG ET GLP + +
Sbjct: 61 ANL----DAYLNDAKPKRVFACTTKGKAFHSDVSYEKGDALIFGPETRGLPDDYIQSLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R +NLS +V + VYE+ RQ YE
Sbjct: 117 EQ----RVRIPMLPD-SRSMNLSNAVSVFVYESWRQFGYE 151
>gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
bescii DSM 6725]
Length = 154
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYK 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF F + G + F+ +G +++ Y YL+FG ET+GLP +
Sbjct: 63 DLNEF---FEKNRG-ANVFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS SV I +YEA RQL + L
Sbjct: 119 TY-----RIPMISD-VRSLNLSNSVAIVLYEALRQLGFPNL 153
>gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
Length = 151
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 8/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P IP NTG I R + LHL+ PLGF++D+ K+K+AG+DYWP+V + +H
Sbjct: 1 MNIVLFQPLIPQNTGTIGRLTVCTDNDLHLIKPLGFELDEKKIKKAGMDYWPHVKLHIHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W D+ +K ++ T + T E ++ + DYLIFG+E+ GLPPE E
Sbjct: 61 SW---EDFLNNTPEDKTMVFCTTKCKKTIYEHTFTEDDYLIFGNESHGLPPEFY-----E 112
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
F IPM ++R NL+ SV I YEA RQ++Y
Sbjct: 113 NFQDSLCTIPMRGDHLRSHNLANSVSIVTYEAIRQISY 150
>gi|398811401|ref|ZP_10570201.1| rRNA methylase, putative, group 2 [Variovorax sp. CF313]
gi|398080774|gb|EJL71572.1| rRNA methylase, putative, group 2 [Variovorax sp. CF313]
Length = 153
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 93/156 (59%), Gaps = 7/156 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLGF +DD L+RAGLDY Y +K H
Sbjct: 1 MFHIVLVHPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W +Q R+ A T RGT ++ ++ GD+L+FGSETSGLPP + D +
Sbjct: 61 ADWQAL--LATEQPAADRMFALTTRGTRPVHDVRFQPGDWLVFGSETSGLPP-VVRDGFA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V + V+EA RQ
Sbjct: 118 EP---QRLRLPMREGQ-RSLNLSNAVAVTVFEAWRQ 149
>gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis
DSM 16069]
Length = 153
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 10/158 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I R CA + LHL+ PLGF++DD K++RAGLDY + +K H
Sbjct: 3 HIVLFEPEIPPNTGNIIRLCANTGFQLHLIKPLGFEIDDKKMRRAGLDYHEWAQVKTHEN 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ EF + E KRL + + +I+Y+ GDYL+FG ET GLP L D
Sbjct: 63 YQEFLN----NEQPKRLFGLSTKAKHYFHQIAYQDGDYLMFGPETRGLPNHILNDI---- 114
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
G +RIPM R LNLS +V I YE RQ ++E
Sbjct: 115 -GEQLLRIPMRPD-SRSLNLSNTVAIVTYEVLRQGSFE 150
>gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
Length = 161
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 13/161 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VVL PQIP NTG +ARTCAA+ LHL+ PLGF +D+ +LKRAGLDYWP+V + VH
Sbjct: 6 RVVLFQPQIPPNTGNVARTCAATGAELHLIEPLGFSLDERQLKRAGLDYWPWVPLHVHPG 65
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ R++ G RLLA + + + + D+L+FG E+ GLPPE L
Sbjct: 66 FEALSAEQRRRGG--RLLALSSQADQPYQHCRFCSDDWLLFGRESDGLPPELLEQADMR- 122
Query: 200 FGGGTIRIPMVETY-----VRCLNLSVSVGIAVYEAARQLN 235
+ IPM + VR LNLSVSV + ++EA RQL
Sbjct: 123 -----LTIPMPGSVRHGGGVRSLNLSVSVAVVLFEALRQLE 158
>gi|406943377|gb|EKD75387.1| hypothetical protein ACD_44C00144G0001 [uncultured bacterium]
Length = 151
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ L P+IP NTG I R CA + LHL+ PLGF+ DDTKL+RAGLDY + IK H+
Sbjct: 2 FHIALFEPEIPPNTGNIIRLCANTGAQLHLIEPLGFRPDDTKLRRAGLDYHEFATIKFHA 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ FR+ ++ KRL A + +G +S++ ++ D +FG ET GLP L E
Sbjct: 62 HFEAFRNEIKK----KRLFAISTKGKKHYSDVDFKDEDVFLFGPETRGLPTPLLKQFPEE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM+ + R LNLS +V + VYEA RQL ++
Sbjct: 118 K----ILRLPML-PHSRSLNLSNAVAVIVYEAWRQLGFK 151
>gi|302872532|ref|YP_003841168.1| TrmH family RNA methyltransferase [Caldicellulosiruptor obsidiansis
OB47]
gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
obsidiansis OB47]
Length = 154
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYR 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F + G + F+ +G +++ Y YL+FG ET+GLP +
Sbjct: 63 ---DLNDFFEKNRGAN-IFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPKWLIEQNIHR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS SV I +YE RQL + L
Sbjct: 119 TY-----RIPMISD-VRSLNLSNSVAIVLYEVLRQLGFPNL 153
>gi|404497234|ref|YP_006721340.1| SpoU-class rRNA methyltransferase CspR [Geobacter metallireducens
GS-15]
gi|418068173|ref|ZP_12705485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens RCH3]
gi|78194837|gb|ABB32604.1| SpoU-class rRNA methyltransferase CspR [Geobacter metallireducens
GS-15]
gi|373557445|gb|EHP83863.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens RCH3]
Length = 158
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 10/154 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL+ P+IP NTG IAR C A+ LHLVG LGF DD LKRAGLDYW V I
Sbjct: 8 HIVLIEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVEIHYWDD 67
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A + + E R + +K+ TH E ++++GD+++FG ET GL PE L++ E
Sbjct: 68 LAALQHAYP----EGRFIYTSKKAAKTHIEAAFKEGDFIVFGKETVGL-PEELIEANREN 122
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
T+RIP+ VR LNLS S GI +YEA RQ
Sbjct: 123 ----TVRIPIFGK-VRSLNLSTSAGIVLYEALRQ 151
>gi|402565387|ref|YP_006614732.1| TrmH family RNA methyltransferase [Burkholderia cepacia GG4]
gi|402246584|gb|AFQ47038.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia cepacia
GG4]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAELLEGFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM + R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-QPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
cenocepacia HI2424]
Length = 172
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 97/164 (59%), Gaps = 8/164 (4%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
++N F VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y
Sbjct: 14 NRNMF-NVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQ 72
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
++VH W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L
Sbjct: 73 MRVHRDWDAF--VAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLE 130
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 131 RFPNEQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 169
>gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
owensensis OL]
gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
owensensis OL]
Length = 154
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYR 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F + G + ++ +G +++ Y YL+FG ET+GLP +
Sbjct: 63 ---DLNDFFEKNRGAN-IFYYSTKGKQYYTQAPYEDNCYLMFGKETAGLPRWLIEQNIHR 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS SV I +YEA RQL + L
Sbjct: 119 TY-----RIPMISD-VRSLNLSNSVAIVLYEALRQLGFPNL 153
>gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7]
Length = 169
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 8/162 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P++P NTG I RTC A+ LHL+ PLGF++ D +KRAGLDYWP++ +V+
Sbjct: 3 MNIVLLEPEMPANTGNIGRTCVATGTKLHLIKPLGFEITDKMVKRAGLDYWPHLNYEVYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ +F + + + +L T + ++E++Y YL+FG E++G+P E L+
Sbjct: 63 NFEDFLE--KNPDCIGKLYMATTKARHIYTEVAYEPDSYLMFGKESAGIPEEILV----- 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM E +R LNLS SV I +YEA RQ + Q++
Sbjct: 116 KYEDYCMRIPM-EYNIRSLNLSNSVAIVLYEALRQHQFAQME 156
>gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
35185]
gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
35185]
gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
35185]
gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
35185]
Length = 160
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 10/164 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IPGNTG IAR CA S LHLV PLGF V+D LKRAGLDYW V + H
Sbjct: 1 MHIVLIEPEIPGNTGNIARLCAVSGIELHLVKPLGFSVEDKYLKRAGLDYWHLVKVHYHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++E F ++ +K+ ++ +SY + D+L+FG ET+G+ PEALL+ E
Sbjct: 61 NFSEVLRLF----AGRQFYYCSKKAPRSYDAVSYTEDDFLVFGKETAGI-PEALLEEHWE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
IRIPM R LNLS + I YEA RQ+ + L+++
Sbjct: 116 D----CIRIPM-RLGARSLNLSSAAAIVAYEAMRQIGFPGLESS 154
>gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2M]
gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2]
gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2]
gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
multivorans CGD2M]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 11/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
W D F E R+ AFT RG+S + ++ GD+ +FGSET GLP E L
Sbjct: 61 RDW----DAFVAAESPDLARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERF 116
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+E +R+PM R +NLS +V + V+EA RQ +E
Sbjct: 117 PAEQ----RVRLPM-RPGNRSMNLSNTVAVVVFEAWRQAGFE 153
>gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
HTCC5015]
gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
HTCC5015]
Length = 159
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ L P+IP NTG I R CA + LHL+ PLGF++DD +L+RAGLDY + ++ H
Sbjct: 1 MFHIALYQPEIPPNTGNIIRLCANTGFQLHLIHPLGFELDDKRLRRAGLDYHEFASVREH 60
Query: 138 STWAEF-RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+W F RD+ + + RL A + RG +S++++R+GD +FG ET GLP + L D
Sbjct: 61 ESWEAFCRDFVQGGDANHRLFALSTRGRQRYSDVAFREGDVFLFGPETRGLPQDILDDLP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM + R LNLS +V + YEA RQ ++
Sbjct: 121 EAQ----RLRLPMRAS-GRSLNLSNTVAVLGYEAWRQQDF 155
>gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
Length = 209
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 10/164 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 46 MHIVLVEPEIPGNTGNIARLCAGTGMDLHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHD 105
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++++ R +Q +G TK +S+I Y + +FG ET GL PE+LL+ E
Sbjct: 106 SFSDVR---KQYKGHPFYFCTTK-AAHIYSDIVYTSDAFFVFGKETEGL-PESLLEDNEE 160
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
T+RIPM + R LNLS +V + YEA RQ + L+ A
Sbjct: 161 H----TVRIPM-QAGARSLNLSNAVAVVAYEALRQNAFVDLRLA 199
>gi|239817363|ref|YP_002946273.1| TrmH family RNA methyltransferase [Variovorax paradoxus S110]
gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
S110]
Length = 153
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 7/156 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLGF +DD L+RAGLDY Y +K H
Sbjct: 1 MFHIVLVQPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W + ++ +R+ A T RGT ++ ++ GD+L+FGSETSGLPP A+ + +
Sbjct: 61 AGWQALLEA--ERPAAERMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPP-AVREGFA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V + V+EA RQ
Sbjct: 118 EP---QRLRLPMREGQ-RSLNLSNAVAVTVFEAWRQ 149
>gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893]
gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893]
Length = 154
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG I R CA + C LHL+ PLGF ++D +++RAGLDY Y + VH
Sbjct: 1 MLNVVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTLEDKQMRRAGLDYSEYATVTVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S + F + E RL T +G+ + ++ Y+ GDYL+FG ET GL P+ + +
Sbjct: 61 SDYQAFLE----SEQPSRLFGLTTKGSRGYHDVEYQNGDYLMFGPETRGL-PQDIREAMP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + VYEA RQ +E
Sbjct: 116 EHH---RLRVPM-RPESRSLNLSNTVALVVYEAWRQFGFE 151
>gi|440740749|ref|ZP_20920225.1| TrmH family RNA methyltransferase [Pseudomonas fluorescens
BRIP34879]
gi|440375906|gb|ELQ12598.1| TrmH family RNA methyltransferase [Pseudomonas fluorescens
BRIP34879]
Length = 151
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP E +LD
Sbjct: 61 ADLASCLESL----GRPRLFAFTTKGSRPFHDASFVDGDAFLFGPESRGLPAE-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E G +R+PM E R LNLS +V +AVYE RQL +
Sbjct: 116 E---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGF 150
>gi|398962049|ref|ZP_10679069.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM30]
gi|398151572|gb|EJM40116.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM30]
Length = 151
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + ++ GD IFG E+ GLPPE L +
Sbjct: 61 ADLASCLESL----GYPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
Length = 184
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 19/191 (9%)
Query: 61 FMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTK 120
FM R + + N +VL P+IP NTG IARTCAA+ LH++ P+GF +DD K
Sbjct: 9 FMSRRIAMSRN--------HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKK 60
Query: 121 LKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YL 178
+KRAGLDYW + I + A+F + Q+G RL TK T+S+ Y G Y
Sbjct: 61 MKRAGLDYWDKLDITYYDNLADFMS--KNQQG--RLHLVTKFADKTYSDEVYDDGKDHYF 116
Query: 179 IFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
+FG E +GLP E + + + IRIPM + +VR LN+S +V + VYEA RQ ++
Sbjct: 117 MFGREDTGLPEEFMREHAEK-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFKG 171
Query: 239 LKTASDTCIDR 249
L+ + D+
Sbjct: 172 LELSHHYQHDK 182
>gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG
19424]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHLV PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLDDARMRRAGLDYHEYATMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W +Q R+ A T RG++ ++++R GD+ +FGSET GL PE
Sbjct: 61 DSWDAL--MASEQPDPTRMFALTTRGSTPFGQVAFRPGDWFVFGSETRGLSPE-----RR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E F IR+PM R LNLS +V + V+EA RQ
Sbjct: 114 EWFPPAQRIRLPMRPDN-RSLNLSNTVAVVVFEAWRQ 149
>gi|410091654|ref|ZP_11288207.1| RNA methyl transferase TrmH [Pseudomonas viridiflava UASWS0038]
gi|409761027|gb|EKN46135.1| RNA methyl transferase TrmH [Pseudomonas viridiflava UASWS0038]
Length = 151
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ ++S+ GD +FG E+ GLP + +LD S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDVSFEPGDAFLFGPESRGLPAD-ILDSLS 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 116 ---GDHRLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 92/163 (56%), Gaps = 14/163 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H +
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
F F EG LL TK G T+S+ ++ + Y IFG ET+GLP +
Sbjct: 64 IEAF---FESTEGNYYLL--TKFGKQTYSDFNFSNTEEEHYFIFGRETTGLP-----NWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM + +R LNLS + + +YEA RQ + L
Sbjct: 114 KEKYADTALRIPMSDK-IRSLNLSNTAALLIYEALRQQQFPNL 155
>gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3]
gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3]
Length = 169
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 93/163 (57%), Gaps = 7/163 (4%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
+ VVLV P+IP NTG + R CA + LHL+ PLGF +DD KL+RAGLDY Y +
Sbjct: 11 ETHMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQM 70
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
+VH W F R+Q RL AFT RG+ + ++ GD+ +FG+ET GL L
Sbjct: 71 QVHRDWDAF--IAREQPDPARLFAFTTRGSGRFHDHAFTPGDWFVFGAETRGLSESMLER 128
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 129 FPNEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 166
>gi|340789188|ref|YP_004754653.1| tRNA (cytosine-O-)-methyltransferase [Collimonas fungivorans
Ter331]
gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331]
gi|340554455|gb|AEK63830.1| tRNA (cytosine-O-)-methyltransferase [Collimonas fungivorans
Ter331]
Length = 160
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 9/162 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHL+ PLGF +DD+K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDSKMRRAGLDYHDYATMQVH 60
Query: 138 STWAEFRDYFRQ--QEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
+ W +F R R+ A T G++ + + +R GD +FGSET GL P
Sbjct: 61 ADWNDFVASMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDIFVFGSETRGLDP-----A 115
Query: 196 TSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E+F IR+PM R LNLS +V + VYEA RQ Y
Sbjct: 116 LRESFAPSQRIRLPMRPDN-RSLNLSNTVAVVVYEAWRQNGY 156
>gi|374620847|ref|ZP_09693381.1| rRNA methylase, putative, group 2 [gamma proteobacterium HIMB55]
gi|374304074|gb|EHQ58258.1| rRNA methylase, putative, group 2 [gamma proteobacterium HIMB55]
Length = 157
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 13/160 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I R CA + LH++ PLGF++DD +L+RAGLDY + +++
Sbjct: 6 LHIVLCQPEIPPNTGNIIRLCANTGASLHVIEPLGFEMDDKRLRRAGLDYHEFANVQI-- 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE--ALLDCT 196
W Y + G +RL+A G HS+++Y++GD L+FGSET GL E AL D
Sbjct: 64 -WKSLPSYI-EAHGSRRLIAVETCGEVAHSDLAYQRGDSLVFGSETKGLSSELLALFD-- 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G +R+PM+ R LNLS +V +AV+EA RQL Y
Sbjct: 120 ----PGHIVRLPMLPGS-RSLNLSNAVAVAVFEAWRQLGY 154
>gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
gi|444355752|ref|ZP_21157501.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
cenocepacia BC7]
gi|444366507|ref|ZP_21166545.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
cenocepacia K56-2Valvano]
gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
gi|443604535|gb|ELT72462.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
cenocepacia K56-2Valvano]
gi|443607944|gb|ELT75609.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Burkholderia
cenocepacia BC7]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RNWDAF--VASEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
>gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
L37603]
gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
L37603]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 89/157 (56%), Gaps = 14/157 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
F F +GE LL TK G T+S+ + + Y IFG ET+GLP D
Sbjct: 64 IESF---FESTDGEYYLL--TKFGKQTYSDFDFSDTQNNHYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ + +RIPM + +R LNLS + + +YEA RQ
Sbjct: 114 KDKYQDTALRIPMSDK-IRSLNLSNTAALLIYEALRQ 149
>gi|398865347|ref|ZP_10620868.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM78]
gi|398243665|gb|EJN29248.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM78]
Length = 151
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ ++S+ GD +FG E+ GLP E L +
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDVSFAPGDAFLFGPESRGLPAEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|389753462|ref|ZP_10191220.1| putative rRNA methylase SpoU family protein [Rhodanobacter sp. 115]
gi|388432607|gb|EIL89601.1| putative rRNA methylase SpoU family protein [Rhodanobacter sp. 115]
Length = 155
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L +P+IP NTG R CA + LHL+ PLGF++DD +L+RAGLDY Y + VH
Sbjct: 1 MLHVILFNPEIPPNTGNAIRLCANTGAALHLIRPLGFELDDARLRRAGLDYHEYARVAVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D G+ R+ AF+ RG H ++SY GD L+FG ET+GL P A+ D
Sbjct: 61 DSL----DECLAAIGQPRVFAFSTRGRVAHVDVSYADGDALLFGCETAGL-PAAVFDAIP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM + R LNLS +V +AVYEA RQL +
Sbjct: 116 PA---QRLRLPM-QPDSRSLNLSNTVAVAVYEAWRQLGF 150
>gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase SpoU [Syntrophobotulus glycolicus DSM
8271]
gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
Length = 156
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 94/161 (58%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IAR CA LHLV PLGF+ DD LKRAGLDYW + + ++
Sbjct: 5 LNIVLVEPEIPPNTGNIARLCAVVGADLHLVKPLGFKTDDKSLKRAGLDYWHRLKMTIYE 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F D+ + G KR LA TK G +SE ++ +G YLIFG ET GL PE L
Sbjct: 65 ---DFDDFEARNPGGKRYLATTK-GKIIYSETTFEEGCYLIFGRETKGLSPEIL-----A 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IR+PM + R LNLS +V I YE RQ Y L
Sbjct: 116 RYPEHLIRLPM-KNECRSLNLSNAVAIVTYEVFRQWGYPGL 155
>gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase SpoU [Thermaerobacter marianensis DSM
12885]
gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
12885]
Length = 153
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 93/156 (59%), Gaps = 10/156 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+I NTG +ARTCA + LHLV PLGF++ D LKRAG+DYW +V VH
Sbjct: 1 MFHVVLVAPEIAPNTGNVARTCAVTGARLHLVRPLGFRLSDRLLKRAGMDYWNHVEWHVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
TW E E R G+ ++++++R GD L+FGSE+ GLPPE L
Sbjct: 61 DTWDELLAAL----PEARFCYLEPDGSQRYTDVTFRPGDALVFGSESRGLPPEFL----- 111
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G T+R+PM +R LNL+ +V + +YEA RQ
Sbjct: 112 RQRPGPTLRVPM-RPGLRSLNLASTVALVLYEAYRQ 146
>gi|354559485|ref|ZP_08978734.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium
metallireducens DSM 15288]
gi|353542381|gb|EHC11844.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium
metallireducens DSM 15288]
Length = 153
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +V+V P+IP NTG +AR CA + LHLV PLGF++ D +KRAGLDYW + + ++
Sbjct: 1 MLNIVMVEPEIPPNTGNVARLCAVTGATLHLVKPLGFEITDKYMKRAGLDYWDQLDLHIY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A+F + R LA TK G+ H+++ + + Y +FG ET GL PE +
Sbjct: 61 ENFAQFEE---MNPSGPRYLATTK-GSRPHTDVQFEQNGYFLFGKETKGLAPEII----- 111
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IR+PM+ RCLNLS SV I YEA RQ Y L
Sbjct: 112 AKYPETAIRLPMLPN-ARCLNLSNSVAIIAYEALRQWGYPGL 152
>gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268]
gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268]
Length = 170
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 8/160 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I RTC A+ LHL+ P GF ++D +K+AG+DYWP + ++ +
Sbjct: 1 MNIVLHEPEIPFNTGAIGRTCVATKSTLHLIKPYGFILNDKNIKKAGMDYWPLLKLREYI 60
Query: 139 TWAEFRDYFRQQE--GEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
++ EF ++ ++ T + TH+E+S+ DY++FG E++G+P E L+D
Sbjct: 61 SYEEFMAGVEEERKIALPKVWYATTKAHKTHTEVSFSPNDYIVFGKESAGIPEEILVDNE 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+E R LNLS SV I +YEA RQ ++
Sbjct: 121 EQ-----CIRIPMLEE-ARSLNLSNSVAIILYEALRQQDF 154
>gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
B-14911]
gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
B-14911]
Length = 159
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 90/164 (54%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V I +
Sbjct: 5 IHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYYD 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
+ EF Y + GE TK G ++ Y K Y IFG ET+GLP E
Sbjct: 65 SLDEF--YEKNAGGE--FFYLTKFGQKPYTSFEYSDKEKDYYFIFGKETTGLPAEV---- 116
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM VR LNLS + I +YEA RQ +Y L
Sbjct: 117 -KENNKDRALRIPMTGN-VRSLNLSNTAAILIYEALRQQDYRHL 158
>gi|326796919|ref|YP_004314739.1| TrmH family RNA methyltransferase [Marinomonas mediterranea MMB-1]
gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
mediterranea MMB-1]
Length = 157
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG + R CA + LHL+ P GF +DD KL+RAGLDY + +K +
Sbjct: 1 MLHIVLYQPEIPPNTGNVIRLCANTGYQLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W F Q E L A T +G+ THSE +++ D L+FG ET GLP E +
Sbjct: 61 ANWDAF---IAQNENIGTLYALTTKGSRTHSEAEFKENDVLVFGPETRGLPAEFIEALPK 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+R+PM + R LNLS +V + VYE+ RQL+Y+ T
Sbjct: 118 PQ----RLRLPM-QADSRSLNLSNTVAVMVYESWRQLDYKMSST 156
>gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16]
gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16]
Length = 156
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 94/161 (58%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHLV PLGF ++D +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W +Q R+ A T RG++ E+++R GD+ +FGSET GL PE
Sbjct: 61 ESWDAL--MASEQPDPARMFALTTRGSTPFGEVAFRPGDWFVFGSETRGLSPE-----RR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ F IR+PM R LNLS +V + V+EA RQ +E
Sbjct: 114 DWFPPAQRIRLPMRPDN-RSLNLSNTVAVVVFEAWRQNGFE 153
>gi|389857209|ref|YP_006359452.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST1]
gi|353740927|gb|AER21934.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST1]
Length = 181
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + ++ +
Sbjct: 16 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDN 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
AEF DY +Q R+ +K T+S+ Y G+ Y +FG E GLP + +
Sbjct: 76 LAEFMDYASKQ---GRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLPEYFMREHPE 132
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM + +VR LN+S + + VYEA RQ + L
Sbjct: 133 K-----AIRIPMNDEHVRSLNVSNTACMIVYEALRQQQFAGL 169
>gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
Length = 153
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+ F++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ AE + G RL AFT +G+ E++Y+ GD +FG E+ GLP E L +
Sbjct: 61 QSLAECLESL----GNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM R LNLS +V + VYEA RQ
Sbjct: 117 EQ----RLRLPM-RPGCRSLNLSNTVAVTVYEAWRQ 147
>gi|357039981|ref|ZP_09101772.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
gibsoniae DSM 7213]
gi|355357344|gb|EHG05120.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
gibsoniae DSM 7213]
Length = 159
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 97/165 (58%), Gaps = 10/165 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG +ARTCA + LHLV PLGF VDD LKRAGLDYW + I H
Sbjct: 1 MHLVLVEPEIPANTGNVARTCAVTGAELHLVKPLGFSVDDKHLKRAGLDYWHLLTIHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
F D+ + G LA T+ G ++++ Y D+L+FG ET+GLP + +
Sbjct: 61 N---FTDFLKAYPGCSFYLATTRAG-RVYTDVQYGPDDFLVFGKETAGLPEDII-----R 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTAS 243
F IRIPM+ + R LNLS SV + ++EA RQ + L+ +
Sbjct: 112 RFMDRCIRIPML-SEARSLNLSNSVAVILFEALRQNGFPGLRQTA 155
>gi|333374182|ref|ZP_08466066.1| RNA methyltransferase [Desmospora sp. 8437]
gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437]
Length = 180
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 71 NGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWP 130
GL + + LV P+IP NTG IARTCA + LHL+ PLGF +D LKR+G+DYW
Sbjct: 21 KGLEELMPFHICLVEPEIPNNTGNIARTCAVTGSVLHLIRPLGFSTEDKYLKRSGMDYWY 80
Query: 131 YVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE 190
V ++ + ++AEF F R T + +++ SYR+GD +FG E+ GLPPE
Sbjct: 81 KVDVRYYDSFAEFTASFPG----GRFFCATTKAQRSYTSFSYREGDIFVFGKESKGLPPE 136
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
L ET+ IRIPM VR NL S I +YEA RQ ++ L
Sbjct: 137 IL-----ETYRDTNIRIPM-RPVVRSHNLGNSAAIILYEALRQTDFPGL 179
>gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
Length = 156
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DDTK++RAGLDY Y + VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W F ++ R+ AFT RG+ + +++ GD+ +FG+ET GLP L
Sbjct: 61 ADWDAF--IAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPGAVLERFPD 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|410694779|ref|YP_003625401.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As]
gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As]
Length = 156
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R CA + C LHLV PLGF +DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S+W Q +RL AFT RG+ + + GD +FG+ET GL D
Sbjct: 61 SSWDALMQTL--QPRPERLFAFTTRGSRLIGSVRFEPGDCFVFGAETRGLS-----DAVR 113
Query: 198 ETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +R+PM E R LNLS SV +AV+EA RQ Y
Sbjct: 114 EQFAPTQRLRLPMREGQ-RSLNLSNSVAVAVFEAWRQNGY 152
>gi|134096081|ref|YP_001101156.1| tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans]
Length = 160
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHLV PLGF +DD K++RAGLDY Y +KVH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 60
Query: 138 STWAEFRDYF--RQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
W F D F Q R+ A T G++ + ++++ GD +FGSET GL P
Sbjct: 61 HDWQAFLDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSETKGLAP-----A 115
Query: 196 TSETFGG-GTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E+F IR+PM R LNLS +V + VYEA RQ
Sbjct: 116 LRESFPPVQRIRLPMRPDN-RSLNLSNTVAVVVYEAWRQ 153
>gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
papyrosolvens DSM 2782]
gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
papyrosolvens DSM 2782]
Length = 164
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG I RTCAA+ LHLVGPLGF ++D LKRAGLDYW ++ ++
Sbjct: 3 FNIVLVEPEIPQNTGNIVRTCAATGTVLHLVGPLGFSIEDKYLKRAGLDYWDEADVRYYN 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
EF + F K T + + + ++ + +++FG ET+GLP E L D
Sbjct: 63 NINEFFEKFPG----KTFYYSTTKAVNNYCDVQFEDDSFILFGKETAGLPEELLRDNKEY 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM + +R LNLS SV I +YEA RQ N+++++
Sbjct: 119 -----CIRIPMKKG-IRSLNLSNSVAIVLYEALRQQNFKEMR 154
>gi|406983501|gb|EKE04686.1| tRNA/rRNA methyltransferase (SpoU) [uncultured bacterium]
Length = 158
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 10/160 (6%)
Query: 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKV 136
K ++VL+ P+IP NTG IAR CA + C L+LVG LGFQ+ D LKRAGLDYW V ++
Sbjct: 4 KPFRIVLIEPEIPQNTGNIARLCACTGCELYLVGKLGFQITDKYLKRAGLDYWEEVKVER 63
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ + ++ F + T + ++EI ++ GD+L+FGSET GLP E +
Sbjct: 64 YENIEDLQEKF----PDNNFYYLTTKAQKLYTEIEFKPGDFLVFGSETKGLPKELI---- 115
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +I+IPM + R LNLS S I +YEA RQ N+
Sbjct: 116 -EKNPDKSIKIPMKIGH-RSLNLSNSASIVLYEAIRQTNF 153
>gi|422870319|ref|ZP_16916812.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087]
gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087]
Length = 184
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 96/172 (55%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 21 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDI---TY 77
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
+ D+ Q +G RL +K +SE +Y D Y +FG E GLP E +
Sbjct: 78 YESLDDFMEQMDG--RLYLISKFAEKVYSEENYAAEDSHYFMFGREDKGLPEEFM----- 130
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S SV + VYEA RQ N+ L + D+
Sbjct: 131 RRHPEKALRIPMNDQHVRSLNVSNSVCMIVYEALRQQNFAGLDLVHEYEADK 182
>gi|429331201|ref|ZP_19211967.1| RNA methyltransferase [Pseudomonas putida CSV86]
gi|428764174|gb|EKX86323.1| RNA methyltransferase [Pseudomonas putida CSV86]
Length = 151
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+GF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCDLHLIEPIGFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A + G+ RL AFT +G+ E+++ GD +FG E+ GLP E L S
Sbjct: 61 VDLASCLESL----GQPRLFAFTTKGSQPFHEVAFEPGDAFLFGPESRGLPAEVLDALES 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G +R+PM R LNLS +V +AVYEA RQ +
Sbjct: 117 ----GQRLRLPM-RPGCRSLNLSNTVAVAVYEAWRQQGF 150
>gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666125|ref|YP_002424748.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 171
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
FL V+L P+IP NTG I R CA + LHLV PLGF DD +L+RAGLDY + + H
Sbjct: 5 FLHVILYEPEIPPNTGNIIRLCANTGATLHLVEPLGFAWDDRRLRRAGLDYHEFAQVHRH 64
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ WA R + G+ + AF+ +GT + +++Y+ GD L+FG ET GLP L +
Sbjct: 65 ADWASCRAFL----GDAHVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPAHLLNSLPA 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM + R LNLS + +AV+EA RQ++Y
Sbjct: 121 RQ----VLRLPM-RSGQRSLNLSNACAVAVFEAWRQMDY 154
>gi|402833887|ref|ZP_10882496.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Selenomonas
sp. CM52]
gi|402279617|gb|EJU28401.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Selenomonas
sp. CM52]
Length = 160
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IPGNTG IAR CA S LHLV PLGF V+D LKRAGLDYW V + H
Sbjct: 1 MHIVLIEPEIPGNTGNIARLCAVSGIELHLVKPLGFSVEDKYLKRAGLDYWHLVKVHYHE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++E F ++ +K+ ++ +SY + D+L+FG ET+G+ PEALL+ E
Sbjct: 61 NFSEVLRLF----AGRQFYYCSKKAPRSYDAVSYTEDDFLVFGKETAGI-PEALLEEHWE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
IRIPM R LNLS + I YEA RQ+ + L ++
Sbjct: 116 D----CIRIPM-RLGARSLNLSSAAAIVAYEAMRQIGFPGLDSS 154
>gi|335045155|ref|ZP_08538178.1| RNA methyltransferase, TrmH family, group 2 [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333758941|gb|EGL36498.1| RNA methyltransferase, TrmH family, group 2 [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 173
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 9/165 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I RTC A+ LHL+ P GF ++ +K+AG+DYW ++ +K H
Sbjct: 1 MNIVLHEPEIPFNTGAIGRTCVATNTRLHLIKPYGFILNSKNIKKAGMDYWEHLQLKEHL 60
Query: 139 TWAEF-RDYFRQQE--GEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
++ +F +D +Q ++ T + T++E+S+ + DY++FG E++G+P E L++
Sbjct: 61 SYEDFLKDIAEEQNSISTPKIWYATTKAKRTYTEVSFSENDYIMFGKESAGIPEEILVEN 120
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM+E R LNLS SV I +YEA RQ +++ LK
Sbjct: 121 EEQ-----CIRIPMLEE-ARSLNLSNSVAIILYEALRQQDFKSLK 159
>gi|389794207|ref|ZP_10197365.1| putative rRNA methylase SpoU family protein [Rhodanobacter fulvus
Jip2]
gi|388432732|gb|EIL89721.1| putative rRNA methylase SpoU family protein [Rhodanobacter fulvus
Jip2]
Length = 157
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L P+IP NTG + R CA + LHL+ PLGF++DD +L+RAGLDY Y + VH
Sbjct: 1 MLHVILFRPEIPPNTGNVIRLCANTGAALHLIRPLGFELDDARLRRAGLDYHEYASVAVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A D G R+ AF+ RG H + + GD L+FG ET+GLP + +
Sbjct: 61 DDFAACLDAI----GSPRVFAFSTRGQVAHVDARFADGDALLFGCETAGLPADVFESIPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM R LNLS SV +AVYEA RQL +
Sbjct: 117 NQ----RLRLPMCPNS-RSLNLSNSVAVAVYEAWRQLGF 150
>gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
Length = 289
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 12/161 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL +PQIP NTG I RTC+ + L LV PLGF++ D KLKRAGLDYW V I V
Sbjct: 136 MKIVLYNPQIPQNTGNIIRTCSVTGAELILVKPLGFELSDRKLKRAGLDYWDEVKISVVD 195
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E E F+ + T H++ +Y K LIFGSETSGLP E +
Sbjct: 196 SLEEIL------EENDDFCFFSSKATQWHTDRTYSKNSILIFGSETSGLPIEVM-----R 244
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ I+IPM+ RCLNLS +V I +YEA RQ+ +++L
Sbjct: 245 KYQEKLIKIPMLAKQ-RCLNLSNAVSIGIYEAWRQVGFKEL 284
>gi|337282510|ref|YP_004621981.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
gi|335370103|gb|AEH56053.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
Length = 180
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+ F +DD K+KRAGLDYW + ++ + +
Sbjct: 16 HIVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDS 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
EF + R +G+ L+ +K T+S++SY+ G Y +FG E GLP + +
Sbjct: 76 LEEFMEAAR--DGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFM----- 126
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ ++ L+ +
Sbjct: 127 RQYEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELS 171
>gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
gi|410860139|ref|YP_006975373.1| tRNA/rRNA methyltransferase [Alteromonas macleodii AltDE1]
gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
'Deep ecotype']
gi|410817401|gb|AFV84018.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii AltDE1]
Length = 154
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF DD +++RAGLDY + +K H
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFDWDDKRVRRAGLDYHEFAHVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ D + + R+ A T +G + HS++SY+KGD LIFG ET GLP + +
Sbjct: 61 ASL----DAYLEDAKPNRVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDYIQSLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R +NLS +V + VYE+ RQ YE
Sbjct: 117 EQ----RVRIPMLPD-SRSMNLSNAVSVFVYESWRQFGYE 151
>gi|313471794|sp|A0KAS4.2|TRML_BURCH RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
>gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619]
gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
W619]
Length = 153
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+ F++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ E++Y+ GD +FG E+ GLP E L +
Sbjct: 61 ESLARCLENL----GNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM+ R LNLS +V + VYEA RQ +
Sbjct: 117 EQ----RLRLPMMPG-CRSLNLSNTVAVTVYEAWRQQGF 150
>gi|333902079|ref|YP_004475952.1| TrmH family RNA methyltransferase [Pseudomonas fulva 12-X]
gi|333117344|gb|AEF23858.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas fulva
12-X]
Length = 153
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHLV PLGF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLVEPLGFELDDKRLRRAGLDYHEYAPLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ + G+ R+ AFT +G+ E++Y+ GD +FG E+ GLP E + D
Sbjct: 61 ASLEACLESL----GQPRVFAFTTKGSQPFHEVAYQPGDAFLFGPESRGLPAE-IRDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM E R LNLS +V +AVYEA RQ +
Sbjct: 116 EA---QRVRLPMREG-CRSLNLSNTVAVAVYEAWRQHGF 150
>gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae]
Length = 167
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 95/166 (57%), Gaps = 13/166 (7%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + I+ H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRH 60
Query: 138 STWAEF-------RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE 190
+ F + + + G RL A T +GT +HS + Y+ GDYL+FG ET GLP
Sbjct: 61 HDYFAFLTAVALSKAHLKTPSG-NRLFALTTKGTPSHSSVVYQPGDYLMFGPETRGLPAY 119
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
L + IRIPM+ R +NLS SV + V+EA RQL+Y
Sbjct: 120 VLDGLPTSQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLDY 160
>gi|381182549|ref|ZP_09891350.1| RNA methyltransferase [Listeriaceae bacterium TTU M1-001]
gi|380317561|gb|EIA20879.1| RNA methyltransferase [Listeriaceae bacterium TTU M1-001]
Length = 169
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 13/166 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL P+IP NTG I+RTCA + LHL+ PLGF DD LKRAGLDYW +V +K + +
Sbjct: 4 HVVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDHVKLKYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
EF F + G TK G +S++ Y K + +FG ET+GLP E +L
Sbjct: 64 LEEF---FEKNAG-GEFYFITKFGRHVYSDVDYSDPNKDYFFVFGKETTGLPDE-VLKAH 118
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
ET +RIPM + +R LNLS + + +YEA RQ ++ L+TA
Sbjct: 119 EET----ALRIPMTDK-IRSLNLSNTAAVLIYEALRQQSFGHLETA 159
>gi|417644477|ref|ZP_12294465.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
VCU121]
gi|445059300|ref|YP_007384704.1| hypothetical protein A284_04715 [Staphylococcus warneri SG1]
gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
epidermidis VCU121]
gi|443425357|gb|AGC90260.1| hypothetical protein A284_04715 [Staphylococcus warneri SG1]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 14/157 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V I H
Sbjct: 4 HIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHE- 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
+ +F GE LL TK G T+S+ + Y IFG ET+GLP D
Sbjct: 63 --DIESFFESTNGEYYLL--TKFGKQTYSDFDFSDTNNNHYFIFGRETTGLP-----DWV 113
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ + +RIPM + +R LNLS + + +YEA RQ
Sbjct: 114 KDKYQDTALRIPMSDK-IRSLNLSNTAALLIYEALRQ 149
>gi|427391937|ref|ZP_18886161.1| RNA methyltransferase, TrmH family, group 2 [Actinobaculum
massiliae ACS-171-V-Col2]
gi|425731904|gb|EKU94717.1| RNA methyltransferase, TrmH family, group 2 [Actinobaculum
massiliae ACS-171-V-Col2]
Length = 163
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 94/167 (56%), Gaps = 9/167 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +V P+IPGNTG R A + LHL+ PLGF D LKRAGLDY + +H
Sbjct: 1 MLNIVFFEPRIPGNTGAAIRLAACTGAILHLIKPLGFDFSDAHLKRAGLDYHDLADLVIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A+F ++ R R+ AFT T+ +++SY+ DYL+FG E +GLP E + D
Sbjct: 61 ENFADFANHARG----GRIFAFTGHTTNNFADVSYQADDYLLFGPEPTGLPEEVMQDPAI 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
+RIPM+ ++R LNL+ S IAVYEA RQL + A D
Sbjct: 117 TKL----VRIPMM-PHLRSLNLANSASIAVYEAWRQLGFAGSADAED 158
>gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp]
gi|421505876|ref|ZP_15952811.1| RNA methyltransferase [Pseudomonas mendocina DLHK]
gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina
ymp]
gi|400343573|gb|EJO91948.1| RNA methyltransferase [Pseudomonas mendocina DLHK]
Length = 154
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ PLGF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D G+ RL AFT +G+ EI+Y+ GD +FG E+ GLP E
Sbjct: 61 ADLQSCLDSL----GQPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM R LNLS +V + VYEA RQ
Sbjct: 117 EQ----RVRLPM-RAGCRSLNLSNTVAVTVYEAWRQ 147
>gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 92/160 (57%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L
Sbjct: 61 GDWDAF--VAAEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPG 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVLV P+IP NTG I R CA + LHL+ PLGF +DD K++RAGLDY + IKV+S
Sbjct: 2 FHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHEFAKIKVYS 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W++F + R+ A T G+ S+ S+ GD +FGSET GL L+
Sbjct: 62 SWSDFLQ--KMSPDPSRMFALTTHGSPCFSKTSFHAGDLFVFGSETKGLS----LEIHRF 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G IR+PM + R LNLS SV I VYEA RQ
Sbjct: 116 FPEGHQIRLPM-RPHNRSLNLSNSVAIVVYEAWRQ 149
>gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
cenocepacia MC0-3]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
>gi|386390246|ref|ZP_10075040.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus
paraphrohaemolyticus HK411]
gi|385693556|gb|EIG24197.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus
paraphrohaemolyticus HK411]
Length = 159
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF DD KLKR+GLDY +V IK +
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDYHEFVDIKKY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +F + + KRL A T +G HS++ Y GD+L+FG E+ G+ P+A+LD
Sbjct: 61 KNFEDFLETAK----PKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGI-PKAILDTLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS SV + VYEA RQ Y
Sbjct: 116 MS---QKIRIPMCKD-SRSMNLSNSVAVVVYEAWRQFGY 150
>gi|352086160|ref|ZP_08953739.1| RNA methyltransferase, TrmH family, group 2 [Rhodanobacter sp.
2APBS1]
gi|351679794|gb|EHA62928.1| RNA methyltransferase, TrmH family, group 2 [Rhodanobacter sp.
2APBS1]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L P+IP NTG + R CA + LHLV PLGFQ+DD +L+RAGLDY Y + VH
Sbjct: 1 MLHVILFRPEIPPNTGNVIRLCANTGAALHLVRPLGFQLDDARLRRAGLDYHEYASVAVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A D G R+ AF+ RG H + + GD L+FG ET+GLP + +LD
Sbjct: 61 DELARCLDAI----GAPRVFAFSTRGRVAHVDARFADGDALLFGCETAGLPSD-VLDAVP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM R LNLS +V +AVYEA RQL +
Sbjct: 116 PP---QRLRLPMCPDS-RSLNLSNTVAVAVYEAWRQLGF 150
>gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
vietnamiensis G4]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 94/161 (58%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L
Sbjct: 61 RDWDAF--VAAESPDPTRMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAELL----- 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E F G +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 114 ERFPGEQRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
SK114]
gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
SK114]
Length = 154
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VL P+IP NTG I R CA + LHLV PLGF +D +K+KRAGLDY + + VH
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHEN- 62
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F D + EG +R+ A T +G++ E+S+RKGD L+FG ET GLP E L +
Sbjct: 63 --FEDCLKALEG-RRIFALTTKGSTRPDEVSFRKGDVLLFGPETRGLPAEVLDSLPA--- 116
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G IR+PM+ R +NLS +V + ++EA RQ
Sbjct: 117 -GQKIRLPMMPDS-RSMNLSNTVAVILFEAWRQ 147
>gi|395647741|ref|ZP_10435591.1| TrmH family RNA methyltransferase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 151
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E +LD
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAE-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ G +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 116 D---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|146296318|ref|YP_001180089.1| TrmH family RNA methyltransferase, group 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 154
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF ++D LKRAGLDYW Y+ +K++
Sbjct: 3 INIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYK 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F + + + F+ +G +++ Y YL+FG ET+GLP + +
Sbjct: 63 ---DLNDFFEKNR-DANVFYFSTKGKQYYTQAPYTDNCYLMFGKETAGLPQWLIEQNIHK 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T+ RIPM+ VR LNLS +V I +YEA RQL + L
Sbjct: 119 TY-----RIPMISD-VRSLNLSNAVAIVLYEALRQLGFPNL 153
>gi|387903362|ref|YP_006333701.1| trNA (cytosine34-2'-O-)-methyltransferase [Burkholderia sp. KJ006]
gi|387578254|gb|AFJ86970.1| tRNA (cytosine34-2'-O-)-methyltransferase [Burkholderia sp. KJ006]
Length = 156
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 94/161 (58%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L
Sbjct: 61 RDWDAF--VAAESPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAELL----- 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E F G +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 114 ERFPGEQRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
Length = 167
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 96/158 (60%), Gaps = 10/158 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLVSPQIP NTG +AR CA + C L LV PLGF +DD +LKRAGLDYW V ++++
Sbjct: 9 LHLVLVSPQIPPNTGNVARLCAVTGCRLILVEPLGFSIDDRQLKRAGLDYWDKVFLRLYP 68
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T + + R F+ R ++ E + +GD+L+FGSE SGL PE + E
Sbjct: 69 T----YAAYAADYPDARRWLFSARAETSLYEARFEEGDHLVFGSEVSGLAPEVM-----E 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G + IPM+E R LNLS SVGI YEA RQ+ +
Sbjct: 120 GGTGTAVTIPMLEDR-RSLNLSTSVGIGTYEALRQVRF 156
>gi|78067649|ref|YP_370418.1| RNA methyl transferase TrmH [Burkholderia sp. 383]
gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
Length = 156
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
>gi|392987854|ref|YP_006486447.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
gi|392335274|gb|AFM69556.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
Length = 167
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I H
Sbjct: 3 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHQN 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F Y GE++L +K +S+ ++ G+ + +FG ET+GLP E + +
Sbjct: 63 LDAFMAYL----GERKLHLVSKFAHKVYSDENFADGEDHFFLFGKETTGLPEEFMRENEE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 119 K-----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 156
>gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
Length = 159
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF+ DD KL+R+GLDY +V I+
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFEWDDKKLRRSGLDYHEFVDIQ-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F D F ++ KRL A T +G HSE+SY GD+L+FG E+ G+ P A+LD
Sbjct: 59 -KYKNFED-FLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGI-PMAILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ IR+PM + R +NLS +V + VYEA RQ Y+
Sbjct: 116 MS---QKIRVPMCKD-SRSMNLSNTVAVVVYEAWRQFGYQ 151
>gi|410667664|ref|YP_006920035.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmH
[Thermacetogenium phaeum DSM 12270]
gi|409105411|gb|AFV11536.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmH
[Thermacetogenium phaeum DSM 12270]
Length = 153
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 91/161 (56%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVL P+IP NTG IAR CAA+ C LHL+GPLGF + + LKRAGLDYW V + +
Sbjct: 2 FNVVLYEPEIPQNTGNIARLCAATGCRLHLIGPLGFSLQNRYLKRAGLDYWDMVDVYYYD 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D + + + R T +G ++ Y GD+ +FGSET GLP + L D SE
Sbjct: 62 CF----DDLKAKHSKGRFFYVTTKGKRFYTYFDYEPGDFFVFGSETKGLPEKLLAD-NSE 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPMV RCLNLS SV I VY A + + L
Sbjct: 117 L----CVRIPMVPA-ARCLNLSNSVAIIVYAALSKQKFRGL 152
>gi|435853137|ref|YP_007314456.1| rRNA methylase, putative, group 2 [Halobacteroides halobius DSM
5150]
gi|433669548|gb|AGB40363.1| rRNA methylase, putative, group 2 [Halobacteroides halobius DSM
5150]
Length = 152
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF D+ ++RAGLDYW + I +
Sbjct: 1 MNIVLYQPEIPPNTGNIARTCACTGASLHLIRPLGFSTDEKAVRRAGLDYWDKLDIHYYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + + E T + H+E+SY+ D+L+FG ET+GLP D E
Sbjct: 61 SLKELFEKY----PEHNFYFSTNFADNHHTEVSYQVDDFLVFGKETAGLP-----DYILE 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ IRIPM + +R LNLS SV I +YEA RQ+++ +L
Sbjct: 112 EYPQQCIRIPMRDN-IRSLNLSNSVSIVLYEALRQVDFPEL 151
>gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae FF5]
gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae 642]
gi|422584115|ref|ZP_16659229.1| RNA methyltransferase TrmH, group 2, partial [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|422620577|ref|ZP_16689254.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
japonica str. M301072]
gi|422642403|ref|ZP_16705821.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7]
gi|422668287|ref|ZP_16728145.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|424069761|ref|ZP_17807205.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|424074554|ref|ZP_17811962.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|440724008|ref|ZP_20904358.1| RNA methyl transferase TrmH [Pseudomonas syringae BRIP34876]
gi|440728719|ref|ZP_20908924.1| RNA methyl transferase TrmH [Pseudomonas syringae BRIP34881]
gi|440745329|ref|ZP_20924624.1| RNA methyl transferase TrmH [Pseudomonas syringae BRIP39023]
gi|443641707|ref|ZP_21125557.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. syringae B64]
gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
japonica str. M301072]
gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7]
gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|407993942|gb|EKG34560.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|407993956|gb|EKG34569.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|440358651|gb|ELP95997.1| RNA methyl transferase TrmH [Pseudomonas syringae BRIP34876]
gi|440360852|gb|ELP98107.1| RNA methyl transferase TrmH [Pseudomonas syringae BRIP34881]
gi|440372696|gb|ELQ09482.1| RNA methyl transferase TrmH [Pseudomonas syringae BRIP39023]
gi|443281724|gb|ELS40729.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. syringae B64]
Length = 151
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|372268423|ref|ZP_09504471.1| TrmH family RNA methyltransferase [Alteromonas sp. S89]
Length = 154
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
++VL P+I NTG I R CA + LHL+ PLGF +DD +L+RAGLDY Y + H
Sbjct: 1 MFKIVLYQPEIAPNTGNIIRLCANTGAELHLIEPLGFAMDDKRLRRAGLDYAEYSRVVRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F E KR+LA + +G+ HSE+ +R D ++FG ET GLP E L
Sbjct: 61 RDW----QAFVTAEQPKRVLALSTKGSKPHSEVEFRADDAIVFGPETRGLPAEFLAMTGQ 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E T+RIPM R +NLS + I +YEA RQL Y
Sbjct: 117 EH----TLRIPMCANS-RSINLSNAAAIVIYEAWRQLGY 150
>gi|340358080|ref|ZP_08680677.1| TrmH family RNA methyltransferase [Sporosarcina newyorkensis 2681]
gi|339615408|gb|EGQ20085.1| TrmH family RNA methyltransferase [Sporosarcina newyorkensis 2681]
Length = 158
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 94/164 (57%), Gaps = 12/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ V L PQIP NTG IARTCA + LHL+ PLGF +D LKRAGLDYW +V I H
Sbjct: 3 IHVALFEPQIPANTGNIARTCAGTDTALHLIRPLGFSTEDKMLKRAGLDYWEHVDITYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
EF D + EGE + TK G +++ Y K + +FG ET+GLP E ++
Sbjct: 63 GIQEFLDAY--PEGEFYFI--TKFGETSYDSFDYSDSEKDVFFVFGKETTGLPKE-IIAK 117
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
ET +RIPM + ++R LNLS + I +YEA RQ + L
Sbjct: 118 HKET----CLRIPMNDEHIRSLNLSNTAAILIYEALRQQKFAHL 157
>gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
morphotype B']
Length = 162
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 10/166 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IP NTG IARTCAA+ LHL+ PLGF++D+ ++RAGLDYW + IK +
Sbjct: 1 MNIVLLEPEIPHNTGAIARTCAATGAALHLIEPLGFKLDEKHVRRAGLDYWDKLNIKRYC 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+AEF Q + K +A TK +S++ Y +++FG E+ G+P E L D E
Sbjct: 61 NFAEF---LVQNDFPKIYMATTK-AKQKYSDVLYEADAWIMFGKESGGIPEEILRD-HKE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
T IR+PM++ +R LNL+ SV + +YEA RQ + L+ D
Sbjct: 116 T----AIRVPMLKD-IRSLNLANSVAVILYEALRQHEFLNLEVEGD 156
>gi|381402097|ref|ZP_09926978.1| tRNA/rRNA methyltransferase [Kingella kingae PYKK081]
gi|380832906|gb|EIC12793.1| tRNA/rRNA methyltransferase [Kingella kingae PYKK081]
Length = 154
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 9/156 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVL P+IP NTG I R CA + C LHLV PLGF +D +K+KRAGLDY + + VH +W
Sbjct: 4 VVLYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDYHEFSQLTVHESW 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+D +G KR+ A T +G++ +++++ GD +FG ET GLP + L SE
Sbjct: 64 ---QDCLAALQG-KRIFALTTKGSTRPDQVAFQAGDVFLFGPETRGLPADILASLPSEQ- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IR PM+ R +NLS +V I V+EA RQ Y
Sbjct: 119 ---KIRFPMMPNN-RSMNLSNTVAITVFEAWRQQGY 150
>gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 154
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVL P+IP NTG + R CA + C LHLV P+GF ++D KL+RAGLDY Y + VH W
Sbjct: 4 VVLFQPEIPPNTGNVIRLCANTGCELHLVKPMGFPLEDAKLRRAGLDYHEYARVVVHEDW 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
R +G +R+ A T +G + H ISY+ GD +FG E+ GLP + L ++
Sbjct: 64 DA---CLRTLQG-RRIFAATTKGATRHDRISYQPGDVFLFGPESRGLPQDVLAALPAQQ- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
IR+PM R LNLS +V + V+EA RQL +E
Sbjct: 119 ---RIRLPM-RPESRSLNLSNAVAVTVFEAWRQLGFE 151
>gi|398998246|ref|ZP_10701025.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM21]
gi|407366991|ref|ZP_11113523.1| TrmH family RNA methyltransferase [Pseudomonas mandelii JR-1]
gi|398120907|gb|EJM10551.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM21]
Length = 151
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|258514114|ref|YP_003190336.1| TrmH family RNA methyltransferase [Desulfotomaculum acetoxidans DSM
771]
gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
acetoxidans DSM 771]
Length = 168
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 10/164 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTCAA++ LHLV PLGF +D LKRAGLDYW V I H
Sbjct: 1 MHIVLVEPEIPANTGNIVRTCAATSSVLHLVRPLGFSTEDKYLKRAGLDYWYLVEIYYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ ++ + + + + ++ Y GD+L+FG ET GL PE+LL S
Sbjct: 61 SFEALKEKYPL----GTFYYVSTKAARHYCDVEYGPGDFLVFGKETRGL-PESLLQANS- 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
G +RIPMV R LNL+ SV I +YEA RQ + L+TA
Sbjct: 115 ---GNCVRIPMVSD-ARSLNLANSVAIVLYEALRQQAFAGLETA 154
>gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
Length = 156
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 10/159 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTCA + LHLV PLGF++ D LKR GLDYW +K++
Sbjct: 3 VNIVLVEPEIPHNTGNIIRTCAVTGAKLHLVKPLGFELTDKHLKRCGLDYWDIADVKIYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E Q + + + T + TH+++ Y+ G +L+FGSET GL E + E
Sbjct: 63 NFEE----LEAQYPDAQYVLGTSKVKRTHTDVEYKDGCFLVFGSETKGLSKEII-----E 113
Query: 199 TFGGGTIRIPMVE-TYVRCLNLSVSVGIAVYEAARQLNY 236
RIPM++ RCLNLS +V + YEA RQL+Y
Sbjct: 114 RHIEDCARIPMLDLERARCLNLSNAVAVMTYEALRQLDY 152
>gi|70733879|ref|YP_257519.1| TrmH family RNA methyltransferase [Pseudomonas protegens Pf-5]
gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas protegens
Pf-5]
Length = 151
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+++GD +FG E+ GLP + L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFQEGDAFLFGPESRGLPADVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|404403646|ref|ZP_10995230.1| TrmH family RNA methyltransferase [Pseudomonas fuscovaginae
UPB0736]
Length = 151
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ P+GF++DD +L+RAGLDY Y +KVH
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPIGFEMDDKRLRRAGLDYHEYATLKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A + G RL AFT +G+ + + +GD +FG E+ GLP E L
Sbjct: 61 PDLASCLESL----GHPRLFAFTTKGSRLFHDARFAEGDAFLFGPESRGLPAEVL----D 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
G +R+PM E R LNLS +V +AVYE RQL +
Sbjct: 113 SLPGDQRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGF 150
>gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411]
gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411]
Length = 162
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 10/155 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IAR C A+ LHL+ PLGF ++D +LKRAGLDYW + +++H +
Sbjct: 16 HIVLFQPDIPPNTGNIARLCVATNSTLHLIKPLGFSLNDKRLKRAGLDYWENLKLEMHDS 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
++F + + G ++ + + + E+ + +GD+LIFGSET GLP + + E
Sbjct: 76 LSDFLNKY----GNRKFFLASTKAVKPYFEVYFEEGDFLIFGSETQGLPNDFI-----EA 126
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
I IPM + VR LNL+ SV + +YEA RQ+
Sbjct: 127 NLDKAINIPMTDK-VRSLNLADSVAVVLYEAIRQV 160
>gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
Length = 168
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 4 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F + G+++L +K +SE ++ G+ + +FG ET+GL PEA +
Sbjct: 64 LEAFLTFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PEAFMRENE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 119 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 157
>gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421]
Length = 162
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 9/156 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVLV P+IP NTG +ARTCAA+ LHLVG LGFQ+ D LKRAGLDYW +V + H
Sbjct: 12 HVVLVDPEIPPNTGNVARTCAATGTSLHLVGTLGFQLSDKYLKRAGLDYWEHVDLHYHP- 70
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ QQ ++ +L +RG + +++ GD+L+FGSE+ GL PE LL
Sbjct: 71 --DLGALLEQQSAQRFVLTSARRGVCLW-DFAFQPGDWLVFGSESRGL-PEGLLSDERHP 126
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+ IP+ E VR LNLS +V + ++E+ RQL+
Sbjct: 127 ----VVTIPLAEPAVRSLNLSNAVAVVLFESLRQLD 158
>gi|394990437|ref|ZP_10383269.1| TrmH family RNA methyltransferase [Sulfuricella denitrificans
skB26]
gi|393790702|dbj|GAB72908.1| TrmH family RNA methyltransferase [Sulfuricella denitrificans
skB26]
Length = 154
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 9/157 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VL P+IP NTG I R A + C LHLV PLGF ++D +L+RAGLDY Y IK+H W
Sbjct: 4 IVLYQPEIPPNTGNIIRLSANTGCRLHLVKPLGFSLEDKQLQRAGLDYHEYATIKIHENW 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
E Q +R+ A T +G+ +SE+++++ D +FG ET GLP +D ++
Sbjct: 64 TECLG----QLSGRRMFALTTKGSMRYSEVAFQRDDVFVFGPETRGLP----VDVLAQFD 115
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
IR+PM R LNLS SV + V+EA RQ+ +E
Sbjct: 116 ESRRIRLPM-RAESRSLNLSNSVAVLVFEAWRQIGFE 151
>gi|338176522|ref|YP_004653332.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR [Parachlamydia
acanthamoebae UV-7]
gi|336480880|emb|CCB87478.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR
[Parachlamydia acanthamoebae UV-7]
Length = 150
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL PQIP NTG + RTCA + L L+GPLGF + D LKRAGLDYW V ++V
Sbjct: 1 MAVVLFQPQIPQNTGNVVRTCAVTGQNLILIGPLGFSITDRWLKRAGLDYWEGVNVQVLD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E D + F+ T ++++SY+ D LIFG+ET GLP + +
Sbjct: 61 NLEELLD-----RTSENFYFFSSHATQNYTDVSYQPKDLLIFGAETHGLP-----ESITN 110
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
+ ++IPMV + VRCLNL+ SVGI VYEA RQ +++
Sbjct: 111 KWPNRCVKIPMV-SGVRCLNLATSVGIGVYEAWRQXGFKK 149
>gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
gi|452879467|ref|ZP_21956565.1| putative rRNA methylase [Pseudomonas aeruginosa VRFPA01]
gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
gi|452183978|gb|EME10996.1| putative rRNA methylase [Pseudomonas aeruginosa VRFPA01]
Length = 153
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA + C LHL+ PLGF++DD +L+RAGLDY Y ++
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVR-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + +D + G+ RL AFT +G+ E++Y++GD +FG E+ GLP E +
Sbjct: 59 -RYPDLQDCL-EALGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEEVRNALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM E R LNLS +V + VYEA RQL +
Sbjct: 117 ER----RLRLPMREG-CRSLNLSNTVAVTVYEAWRQLGF 150
>gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 160
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 14/163 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++ L P+IP NTG IARTCAA L+L+ PLGF+++D LKRAGLDYWP V +K +S
Sbjct: 1 MEISLFEPRIPQNTGSIARTCAAFDITLNLIEPLGFKLEDKYLKRAGLDYWPLVKLKNYS 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F+D + KR++AF+K+ + + + D L+FG E +GLP + S
Sbjct: 61 NFNNFKD----SKKNKRIIAFSKKNGVYLKDFRFHEDDILLFGREDTGLPNNIINASNSL 116
Query: 199 TFGGGTIRIPMVETY------VRCLNLSVSVGIAVYEAARQLN 235
+I +P V VR LNLSV+ GIA+YEA +Q+N
Sbjct: 117 I----SIFMPKVALSNNDPKGVRSLNLSVACGIAIYEAYKQIN 155
>gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella morbillorum M424]
gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella morbillorum M424]
Length = 157
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 92/164 (56%), Gaps = 14/164 (8%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTC + LHL+ PLGF +DD +KRAGLDYW ++ + V
Sbjct: 3 NIVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLIV--- 59
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY-RKGD---YLIFGSETSGLPPEALLDC 195
W F D F + +K TK G +S+ + K D Y IFG ET GLP E
Sbjct: 60 WDSF-DEFLEATSDKNYYLITKFGQKIYSDFDFSNKNDEEIYFIFGRETKGLPKEF---- 114
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIPM E VR LNLS + + +YEA RQ N+ +L
Sbjct: 115 -REKYSEQALRIPMSEN-VRSLNLSNTAALIIYEALRQQNFSEL 156
>gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
PC4.1]
gi|431040273|ref|ZP_19492780.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1590]
gi|431750955|ref|ZP_19539649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E2620]
gi|431758240|ref|ZP_19546868.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Enterococcus faecium
E3083]
gi|431763704|ref|ZP_19552253.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E3548]
gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
PC4.1]
gi|430562125|gb|ELB01378.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1590]
gi|430616213|gb|ELB53137.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E2620]
gi|430617903|gb|ELB54767.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Enterococcus faecium
E3083]
gi|430622077|gb|ELB58818.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E3548]
Length = 167
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 3 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F + G+++L +K +SE ++ G+ + +FG ET+GL PEA +
Sbjct: 63 LEAFLTFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PEAFMRENE 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 118 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 156
>gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
WAL-14163]
gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
WAL-14163]
gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
Length = 163
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 12/162 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P++P NTG I R+C A+ LHL+ PLGF++ D ++KRAGLDYWP++ + V+S
Sbjct: 1 MNIVLYEPEMPMNTGNIGRSCVATKTKLHLIEPLGFRLSDREIKRAGLDYWPHLDVTVYS 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++RD+ + G K +A TK + +S++ Y Y++FG E+ G+P E L++ E
Sbjct: 61 ---DYRDFLDRNPGAKIYMATTK-APNVYSDVKYEPDCYIMFGPESRGIPEEILVE-NQE 115
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
T +RIPM ET R LNLS SV + +YEA RQ +EQ+
Sbjct: 116 T----CVRIPMWGET--RSLNLSNSVAVILYEALRQNGFEQM 151
>gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|422682761|ref|ZP_16741025.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 151
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 92/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 PDLAS----CMEKIGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
AMMD]
Length = 170
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+LV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 15 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 74
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP + L +
Sbjct: 75 RDWDAF--VAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPN 132
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 133 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 167
>gi|398838890|ref|ZP_10596142.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM102]
gi|398113942|gb|EJM03779.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM102]
Length = 151
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + G RL AFT +G+ + S+ +GD +FG E+ GLP E L S
Sbjct: 61 ADLPSCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|389799169|ref|ZP_10202172.1| putative rRNA methylase SpoU family protein [Rhodanobacter sp.
116-2]
gi|388443628|gb|EIL99770.1| putative rRNA methylase SpoU family protein [Rhodanobacter sp.
116-2]
Length = 156
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L P+IP NTG + R CA + LHL+ PLGFQ+DD +L+RAGLDY Y + VH
Sbjct: 1 MLHVILFRPEIPPNTGNVIRLCANTGAALHLIRPLGFQLDDARLRRAGLDYHEYASVAVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A D G R+ AF+ RG H + + GD L+FG ET+GLP + +LD
Sbjct: 61 DELARCLDAI----GAPRVFAFSTRGRVAHVDARFADGDALLFGCETAGLPSD-VLDAVP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM R LNLS +V +AVYEA RQL +
Sbjct: 116 PP---QRLRLPMCPDS-RSLNLSNTVAVAVYEAWRQLGF 150
>gi|422882834|ref|ZP_16929290.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
Length = 167
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 97/172 (56%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
D+ Q +G RL +K +SE ++ Y +FG E GLP E +
Sbjct: 64 ---LEDFMEQMDG--RLYLISKFAEKVYSEENFAAESSHYFMFGREDKGLPEEFM----- 113
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LN+S +V + VYEA RQ N+ L + +D+
Sbjct: 114 RRYPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQNFAGLDLVHEYEVDK 165
>gi|363894588|ref|ZP_09321668.1| hypothetical protein HMPREF9629_01979 [Eubacteriaceae bacterium
ACC19a]
gi|361961987|gb|EHL15138.1| hypothetical protein HMPREF9629_01979 [Eubacteriaceae bacterium
ACC19a]
Length = 156
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LH++ P GF + + +KR+G+DY Y I+ +
Sbjct: 3 LNIVLFEPEIPANTGNIIRTCVCTNTTLHMIRPFGFSMSEKMIKRSGMDYIQYADIRYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F +Y+ + + EK + FT + HS++ Y+ GD+L+FG E+ GL PE + +
Sbjct: 63 S---FEEYYEKYDKEK-MYFFTTKARHKHSDVVYKDGDHLVFGPESRGL-PEKIRSINEQ 117
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM+ YVR LNLS SV I ++EA RQ++Y++
Sbjct: 118 ----NNVRIPMLFNEYVRSLNLSNSVAIGLFEALRQIDYKEF 155
>gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
gi|424764238|ref|ZP_18191681.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX1337RF]
gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
gi|402419807|gb|EJV52080.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
TX1337RF]
Length = 187
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 23 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 82
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F + G+++L +K +SE ++ G+ + +FG ET+GL PEA +
Sbjct: 83 LEAFLTFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PEAFMRENE 137
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 138 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 176
>gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase SpoU [Geobacter daltonii FRC-32]
gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter daltonii FRC-32]
Length = 158
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 95/161 (59%), Gaps = 10/161 (6%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
+ +N+ +VLV P+IP NTG IAR C A+ LHLVG LGF DD LKRAGLDYW V
Sbjct: 1 MVKNESFNIVLVEPEIPPNTGNIARLCGATGTILHLVGKLGFSTDDKTLKRAGLDYWSEV 60
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEAL 192
I W + D + R + +K+ T+ E+ +R GD+++FG ET GL PE L
Sbjct: 61 EIHY---WPDL-DTLKAAYPNGRFIYTSKKVAKTYVELEFRCGDFIVFGKETKGL-PEDL 115
Query: 193 LDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
++ T ++RIP+ VR LNLS S GI +YEA RQ
Sbjct: 116 IEANPAT----SVRIPIFGK-VRSLNLSTSAGIVLYEALRQ 151
>gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
Length = 159
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF DD KL+R+GLDY +V I+ +
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F ++ KRL A T +G HS++ Y GD+L+FG E+ G+ P+A+LD
Sbjct: 61 KDF----DDFLERAKPKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGI-PKAILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ IRIPM + R +NLS SV + VYEA RQ Y+
Sbjct: 116 MS---QKIRIPMCKD-SRSMNLSNSVAVVVYEAWRQFGYQ 151
>gi|383933695|ref|ZP_09987139.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383705301|dbj|GAB57230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 155
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG I R CA + LHL+ PLGF DD ++KRAGLDY + +K H
Sbjct: 1 MLHVVLFEPEIPPNTGNIIRLCANTGYQLHLIEPLGFAWDDKRVKRAGLDYHEFAPVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +A F R+ A T +G + HS++ Y+ GD LIFG E+ GLPPE L
Sbjct: 61 ANFAA----FVTDVAPTRMFACTTKGHTGHSDVRYQAGDTLIFGPESRGLPPEVLQQLPQ 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ +RIPM + R +NLS +V + VYE+ RQL +
Sbjct: 117 THW----LRIPMT-AHSRSMNLSNAVAVFVYESWRQLGF 150
>gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium
HTCC2080]
gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium
HTCC2080]
Length = 158
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 9/158 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IPGNTG I R CA + LH++ PLGF++DD +L+RAGLDY + +
Sbjct: 6 LHIVLYEPEIPGNTGSIIRLCANTGAALHVIKPLGFEMDDKRLRRAGLDYHEFASVM--- 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W E ++R+Q ++RL+A G + HS S+ D L+FGSET GL PEA+L S
Sbjct: 63 QW-ESLAHYREQNSDRRLVAVETCGVARHSNFSFSNSDALLFGSETKGL-PEAILVTLSR 120
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+++PM+ R LNL+ +V + VYEA RQ +Y
Sbjct: 121 DH---IVKLPMLPNS-RSLNLANAVSVVVYEAWRQGDY 154
>gi|421870863|ref|ZP_16302492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Burkholderia cenocepacia
H111]
gi|358069192|emb|CCE53370.1| tRNA (cytosine34-2'-O-)-methyltransferase [Burkholderia cenocepacia
H111]
Length = 156
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 CDWDAF--VASEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
>gi|430840397|ref|ZP_19458322.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Enterococcus faecium
E1007]
gi|431064231|ref|ZP_19493578.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1604]
gi|431124656|ref|ZP_19498652.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1613]
gi|431593392|ref|ZP_19521721.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1861]
gi|431738604|ref|ZP_19527547.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1972]
gi|431741470|ref|ZP_19530375.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E2039]
gi|430495162|gb|ELA71369.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Enterococcus faecium
E1007]
gi|430566941|gb|ELB06029.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1613]
gi|430568872|gb|ELB07902.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1604]
gi|430591269|gb|ELB29307.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1861]
gi|430597332|gb|ELB35135.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E1972]
gi|430601648|gb|ELB39242.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E2039]
Length = 167
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 3 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F + G+++L +K +SE ++ G+ + +FG ET+GL PEA +
Sbjct: 63 LEAFLAFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PEAFMRENE 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 118 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 156
>gi|379011224|ref|YP_005269036.1| RNA methyltransferase SpoU [Acetobacterium woodii DSM 1030]
gi|375302013|gb|AFA48147.1| RNA methyltransferase SpoU [Acetobacterium woodii DSM 1030]
Length = 154
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IARTCA + LHL+ PLGF +D+ LKRAGLDYW V + V+
Sbjct: 1 MNIVLYQPEIPQNTGNIARTCALTETNLHLIKPLGFSLDEKHLKRAGLDYWDLVNLSVYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ + F ++ +L T + T + +I+Y + +L+FG ET+G+P +
Sbjct: 61 SFEQ----FIEKNPAAKLYLLTTKATKFYHQINYDQNAFLMFGKETAGIP-----EAIHA 111
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ RIPM R LNLS +V I +YEA RQ N++ L
Sbjct: 112 AYPENRFRIPMRNHEKARSLNLSNAVNIVLYEALRQYNFQDL 153
>gi|374704829|ref|ZP_09711699.1| RNA methyltransferase [Pseudomonas sp. S9]
Length = 157
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+GF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCNLHLIEPIGFELDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ G+ R+ AFT +GT E+SY+ GD +FG E+ GLP E
Sbjct: 61 ADLQSCLASI----GQPRVFAFTTKGTQGFHEVSYQPGDAFLFGPESRGLPQEVRDALPV 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM E R LNLS +V IAVYEA RQ ++
Sbjct: 117 EQ----CVRLPMREG-CRSLNLSNTVAIAVYEAWRQQDF 150
>gi|429210613|ref|ZP_19201779.1| putative rRNA methylase [Pseudomonas sp. M1]
gi|428158027|gb|EKX04574.1| putative rRNA methylase [Pseudomonas sp. M1]
Length = 153
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ +
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCSLHLIEPLGFELDDKRLRRAGLDYHEYAPVQRY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ E + G RL AFT +G+ E++Y++GD +FG E+ GLP E
Sbjct: 61 ASLEECLEKL----GHPRLFAFTTKGSHAFHEVAYQRGDAFLFGPESRGLPEEVRNALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM R LNLS +V + VYEA RQL +
Sbjct: 117 EQ----RLRLPM-RPDSRSLNLSNTVAVTVYEAWRQLGF 150
>gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
HKI 454]
Length = 200
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
+ VVLV P+IP NTG I R CA + LHLV PLGF +DD K++RAGLDY Y ++
Sbjct: 43 HSMFNVVLVEPEIPPNTGNIIRLCANTGATLHLVEPLGFPLDDAKMRRAGLDYHEYAQMR 102
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
VH W+ QQ R+ AFT RG+S + +++ GD+ +FG+ET G L D
Sbjct: 103 VHQDWSTL--LATQQPDPARMFAFTTRGSSMFGDRAFQPGDWFVFGAETRG-----LCDT 155
Query: 196 TSETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ F +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 156 VLQHFAVDQRVRLPM-RAGNRSLNLSNTVAVVVFEAWRQHGFE 197
>gi|392949197|ref|ZP_10314788.1| 23S rRNA methyltransferase [Lactobacillus pentosus KCA1]
gi|392435612|gb|EIW13545.1| 23S rRNA methyltransferase [Lactobacillus pentosus KCA1]
Length = 170
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+ L P +P NTG IARTCA + LHL+ PLGF++DD LKRAGLDYW V I H
Sbjct: 4 HIALFEPLMPANTGNIARTCAGTDTALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYH-- 61
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDCT 196
A+ +D+ +L +K ++++ Y K Y +FG ET+GLP +
Sbjct: 62 -ADLQDFLASIPDLAQLYLVSKFAEHDYTDVDYHDTSKDHYFLFGKETTGLPEPFM---- 116
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIP ++++R LNLS S I +YEA RQ N+ L+
Sbjct: 117 -RQYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQNFPNLE 159
>gi|333894640|ref|YP_004468515.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2]
gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2]
Length = 154
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF+ DD +++RAGLDY + +K H
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ D + + E R+ A T +G + HS+ Y+KGD L+FG ET GLP + +
Sbjct: 61 ASL----DAYIESEKPSRIFACTTKGKAFHSDAQYKKGDALLFGPETRGLPDDVIDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R +NLS +V + VYE+ RQL Y+
Sbjct: 117 EQ----RVRIPMLPD-SRSMNLSNAVSVFVYESWRQLGYD 151
>gi|333376283|ref|ZP_08468069.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
Length = 154
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 9/156 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVL P+IP NTG I R CA + C LHLV PLGF +D +K+KRAGLDY + + VH +W
Sbjct: 4 VVLYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDYHEFSQLTVHESW 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
+D + +G KR+ A T +G++ +++++ GD +FG ET GLP + L SE
Sbjct: 64 ---QDCWAALQG-KRIFALTTKGSTRPDQVAFQAGDVFLFGPETRGLPTDILASLPSEQ- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
IR PM+ R +NLS +V I V+EA RQ Y
Sbjct: 119 ---KIRFPMMPDN-RSMNLSNTVAITVFEAWRQQGY 150
>gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 150
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL PQIP NTG + RTCA + L L+GPLGF + D LKRAGLDYW V ++V
Sbjct: 1 MAVVLFQPQIPQNTGNVVRTCAVTGQNLILIGPLGFSITDRWLKRAGLDYWEGVNVQVLD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E D + F+ T ++++SY+ D LIFG+ET GLP + +
Sbjct: 61 NLEELLD-----RTSENFYFFSSHATQNYTDVSYQPKDLLIFGAETHGLP-----ESITN 110
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
+ ++IPMV + VRCLNL+ SVGI VYEA RQ +++
Sbjct: 111 KWPNRCVKIPMV-SGVRCLNLATSVGIGVYEAWRQQGFKK 149
>gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
proteobacterium HTCC2148]
gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
proteobacterium HTCC2148]
Length = 157
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 95/163 (58%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L++VL P+IP NTG I R CA + C LHL+ PLGF +D+ KL+RAGLDY + + V+
Sbjct: 4 MLKIVLYQPEIPPNTGNIMRLCANTGCSLHLIEPLGFDLDEKKLRRAGLDYREFAEVSVY 63
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + + RL+ T +G++ H + +Y GD L+FG ET GLP L
Sbjct: 64 PEL----NTFTAKHPQCRLMGVTTKGSTPHHQAAYTSGDALLFGPETRGLPASVLSKLPP 119
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM++ R LNLS + + YEA RQL +E L+
Sbjct: 120 QQ----RIRIPMLKN-SRSLNLSNAAAVITYEALRQLGFEGLE 157
>gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 151
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E980]
gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
E980]
Length = 170
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 6 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 65
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F + G+++L +K +SE ++ G+ + +FG ET+GL PEA +
Sbjct: 66 LEAFLAFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PEAFMRENE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 121 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 159
>gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
IOP40-10]
gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
MEX-5]
gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
gi|313471799|sp|Q0BBL1.2|TRML_BURCM RecName: Full=tRNA (cytidine(34)-2'-O)-methyltransferase; AltName:
Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL
gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
IOP40-10]
gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
MEX-5]
gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
MC40-6]
Length = 156
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+LV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP + L +
Sbjct: 61 RDWDAF--VAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein
[Stigmatella aurantiaca DW4/3-1]
gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein
[Stigmatella aurantiaca DW4/3-1]
Length = 167
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 96/157 (61%), Gaps = 10/157 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLVSPQIP NTG +AR CA + L L+ PLGF + D LKRAGLDYW V +K++
Sbjct: 9 LHLVLVSPQIPPNTGNVARLCAVTGSRLILIEPLGFSIADRDLKRAGLDYWDKVFLKLYP 68
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ + + F +R L F+ R ++ + GD+L+FGSE +GLP E + +
Sbjct: 69 TYPAYLEDF---PAARRWL-FSARAPTSLYAARFEAGDHLVFGSEVTGLPAEVMAGGS-- 122
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
G ++ IPM+E R LNLS SVGIA YEA RQ+
Sbjct: 123 ---GQSVTIPMLEER-RSLNLSTSVGIATYEALRQVQ 155
>gi|387773480|ref|ZP_10128838.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus
parahaemolyticus HK385]
gi|386904829|gb|EIJ69612.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus
parahaemolyticus HK385]
Length = 159
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF DD KLKR+GLDY +V IK
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDYHEFVDIK-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F D+ + KRL A T +G HS++ Y GD+L+FG E+ G+ P+A+LD
Sbjct: 59 -KYKNFEDFLATAK-PKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGI-PKAILDMLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS SV + VYEA RQ Y
Sbjct: 116 MS---QKIRIPMCKD-SRSMNLSNSVAVVVYEAWRQFGY 150
>gi|422857856|ref|ZP_16904506.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057]
gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057]
Length = 184
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 21 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDS 80
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGDYLIFGSETSGLPPEALLDCTS 197
D+ Q +G RL +K +SE ++ Y +FG E GL PE + C
Sbjct: 81 ---LEDFMEQMDG--RLYLISKFAEKVYSEENFAAESSHYFMFGREDKGL-PEEFMRCHP 134
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
E +RIPM + +VR LN+S +V + VYEA RQ N+ L + D+
Sbjct: 135 EK----ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEADK 182
>gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG
18311]
gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
CNRZ1066]
Length = 184
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
SQ +VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW +
Sbjct: 14 SQMSRNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLD 73
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEA 191
I + A+ F + RL TK T+SE Y G+ Y +FG E +GLP +
Sbjct: 74 ITYYDNLAD----FMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDF 129
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ + + IRIPM + +VR LN+S +V + VYEA RQ +E L+ +
Sbjct: 130 MREHPEK-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELS 175
>gi|388257974|ref|ZP_10135152.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio sp. BR]
gi|387938095|gb|EIK44648.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio sp. BR]
Length = 154
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R A + C LHL+ PLGF++D+ + RAG+DY +++H
Sbjct: 1 MLHIVLFEPEIPPNTGNIIRLAANTGCQLHLIEPLGFKLDEKSVVRAGMDYAETQDVRLH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W + F QE R+ A + +GT HS+ ++ GDYL+FG ET GLP +
Sbjct: 61 KSWED----FLAQENPARIFALSTKGTRCHSDAQFQSGDYLLFGPETRGLPAAIRESLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ +RIPM R +NLS +V + VYEA RQL Y
Sbjct: 117 DQ----VLRIPMAANS-RSMNLSNAVAVMVYEAWRQLGY 150
>gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
Length = 180
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+ F +DD K+KRAGLDYW + ++ + +
Sbjct: 16 HIVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDS 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
EF + R +G+ L+ +K T+S++SY+ G Y +FG E GLP + +
Sbjct: 76 LEEFMEAAR--DGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEE 131
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ ++ L+ +
Sbjct: 132 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELS 171
>gi|383318276|ref|YP_005379118.1| putative rRNA methylase SpoU family [Frateuria aurantia DSM 6220]
gi|379045380|gb|AFC87436.1| putative rRNA methylase SpoU family [Frateuria aurantia DSM 6220]
Length = 154
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ V+L P+IP NTG + R CA + LHL+ PLGF++DDT+LKRAGLDY Y ++ H
Sbjct: 1 MIHVILFQPEIPPNTGNVIRLCANTGASLHLIEPLGFELDDTRLKRAGLDYHEYARVRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A + G+ R+ A T RG +E+++ GD L+FG ET+GLPP +
Sbjct: 61 PDLAS----CLLELGQPRVFALTTRGQRRPTEVAFAAGDALLFGRETAGLPPSVVESLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ +R+PM + R LNLS +V + VYEA RQL ++
Sbjct: 117 DQ----RLRLPM-QASSRSLNLSNAVAVTVYEAWRQLGFD 151
>gi|348027955|ref|YP_004870641.1| rRNA methylase [Glaciecola nitratireducens FR1064]
gi|347945298|gb|AEP28648.1| putative rRNA methylase [Glaciecola nitratireducens FR1064]
Length = 157
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ L PQI NTG R C+ + C LHL+ PLGF +++ +L+RA LDY + +H
Sbjct: 1 MFHIALFEPQIAPNTGNAIRLCSNNGCHLHLIEPLGFSMEEKQLRRASLDYRDLANVTIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F Q+ G +R+ A T +G+ H+E +Y++GD L+FGSETSGLP D
Sbjct: 61 KNY----DAFLQEMGPRRIFALTTKGSIPHNEPTYQEGDVLLFGSETSGLP-----DDIR 111
Query: 198 ETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ F IRIPM+ R LNLS S+ I YEA RQL++
Sbjct: 112 DAFAPDRRIRIPMLAN-ARSLNLSNSIAIVSYEAWRQLDF 150
>gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato T1]
gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato Max13]
gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato K40]
gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. tomato T1]
Length = 151
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDASFTPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
Length = 155
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 8/155 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +V+V P+IP NTG +AR CAA+ LHL+ PLGF++DD +LKRAG+DYW V +
Sbjct: 1 MNIVMVEPEIPPNTGNVARLCAATKTRLHLIEPLGFKLDDKQLKRAGMDYWQQVEWR--- 57
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
WA ++ + Q + RL G ++E+ Y DYL+FG ET+GLP + LL E
Sbjct: 58 QWANWKTFCEQLPADARLWFVESDGPRLYTEVQYLPEDYLVFGRETAGLPKQ-LLKENPE 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +R+PM R LNLS I ++EA RQ
Sbjct: 117 RW----LRLPMFNAESRSLNLSNCAAIVLFEALRQ 147
>gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999]
Length = 154
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA S LHL+ PLGF+ DD K++RAGLDY + ++ H
Sbjct: 1 MLDIVLYEPEIPPNTGNIIRLCANSGFALHLIEPLGFEWDDKKVRRAGLDYHEFANVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D + +R+ A T +G+ HS+ SY GD LIFG ET GLP + +L
Sbjct: 61 ANL----DAYLASAKPQRIFACTTKGSMFHSKASYAPGDCLIFGPETRGLPHDFILSLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +RIPM+ R +NLS SV + +YEA RQ+++E
Sbjct: 117 EQ----RVRIPMLSD-SRSMNLSNSVAVFIYEAWRQMDFE 151
>gi|418292387|ref|ZP_12904328.1| RNA methyltransferase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379063811|gb|EHY76554.1| RNA methyltransferase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 160
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 10/160 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA + C LHL+ PLG+++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERH 60
Query: 138 ----STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
S A +G RL AFT +G+ E+SYR+GD L+FG E+ GLPPE
Sbjct: 61 ADLPSCLARIGIDAANADG-PRLFAFTTKGSQPFHEVSYRRGDALLFGPESRGLPPEIRN 119
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+E +R+PM R LNLS +V +AVYEA RQ
Sbjct: 120 ALPNEQ----RLRLPM-RPDSRSLNLSNTVAVAVYEAWRQ 154
>gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 154
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 7/156 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLGF +DD ++RAGLDY Y +K H
Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W F D ++ RL T RGT + E++++ GD+L+FGSET G+ + +
Sbjct: 61 ASWQHFLDA--ERPAPDRLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFVRMSFSP 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E ++R+PM R LNLS +V + V+EA RQ
Sbjct: 119 ER----SLRLPMRPDQ-RSLNLSNAVAVTVFEAWRQ 149
>gi|398851372|ref|ZP_10608058.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM80]
gi|398246881|gb|EJN32355.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM80]
Length = 151
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A G R+ AFT +G+ + ++ GD IFG E+ GLPPE L +
Sbjct: 61 ADLASCLASI----GNPRVFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|357057947|ref|ZP_09118804.1| hypothetical protein HMPREF9334_00521 [Selenomonas infelix ATCC
43532]
gi|355374524|gb|EHG21818.1| hypothetical protein HMPREF9334_00521 [Selenomonas infelix ATCC
43532]
Length = 164
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 95/168 (56%), Gaps = 10/168 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IPGNTG IAR CA + LHLV PLGF DD LKRAGLDYW V + H
Sbjct: 1 MHIVLVEPEIPGNTGNIARLCAGTGIELHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E + + EG TK +S+I+Y +L+FG ET+GL PE+LL
Sbjct: 61 SFDEVQ---VKYEGHPFYFCTTK-AAQIYSDIAYTSDVFLVFGKETAGL-PESLLAANE- 114
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
TIRIPM R LNLS +V + YEA RQ + +L A C
Sbjct: 115 ---AHTIRIPM-HAGARSLNLSNAVAVVAYEALRQNAFVELSLAGTGC 158
>gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
gi|416158009|ref|ZP_11605448.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
101P30B1]
gi|416217880|ref|ZP_11624548.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
7169]
gi|416223678|ref|ZP_11626423.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
103P14B1]
gi|416227369|ref|ZP_11627168.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
46P47B1]
gi|416232455|ref|ZP_11628946.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
12P80B1]
gi|416239914|ref|ZP_11632141.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
gi|416242437|ref|ZP_11633473.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
gi|416247046|ref|ZP_11635415.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
gi|416249613|ref|ZP_11636710.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
CO72]
gi|416255157|ref|ZP_11639033.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
O35E]
gi|421780025|ref|ZP_16216515.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
BBH18]
gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
7169]
gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
103P14B1]
gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
46P47B1]
gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
12P80B1]
gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
101P30B1]
gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
CO72]
gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
O35E]
gi|407812819|gb|EKF83603.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
Length = 181
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 97/166 (58%), Gaps = 11/166 (6%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
+ + +VL SP+IP NTG I R CA + LHLV PLGF++DDT+LKRAGLDY Y +
Sbjct: 6 DALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLS 65
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD-----YLIFGSETSGLPPE 190
VH W E + + G +R++A T + + E ++ + L+FGSET GLP E
Sbjct: 66 VHDNWQETKSALKSL-GVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEE 124
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
D + + +R+PM+ R LNL+ SVGI +YE RQL +
Sbjct: 125 VRADIGANHW----LRLPMLPD-SRSLNLANSVGICLYEVWRQLGF 165
>gi|419799452|ref|ZP_14324798.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis F0449]
gi|385698038|gb|EIG28429.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis F0449]
Length = 180
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+ F +DD K+KRAGLDYW + ++ + +
Sbjct: 16 HIVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDS 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
EF + R +G+ L+ +K T+S++SY+ G Y +FG E GLP + +
Sbjct: 76 LEEFMEAAR--DGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEE 131
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ ++ L+ +
Sbjct: 132 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELS 171
>gi|387880063|ref|YP_006310366.1| SpoU rRNA methylase family protein [Streptococcus parasanguinis
FW213]
gi|386793513|gb|AFJ26548.1| SpoU rRNA methylase family protein [Streptococcus parasanguinis
FW213]
Length = 180
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+ F +DD K+KRAGLDYW + ++ + +
Sbjct: 16 HIVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDS 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
EF + R +G+ L+ +K T+S++SY+ G Y +FG E GLP + +
Sbjct: 76 LEEFMEAAR--DGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEE 131
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ IRIPM + +VR LN+S +V + VYEA RQ ++ L+
Sbjct: 132 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLE 169
>gi|422658438|ref|ZP_16720872.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. lachrymans str. M302278]
gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. lachrymans str. M302278]
Length = 151
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDASFTPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416013780|ref|ZP_11561736.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
gi|416022144|ref|ZP_11567384.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422403051|ref|ZP_16480110.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422608022|ref|ZP_16680013.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
Length = 151
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 92/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 PDLAS----CLEKIGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
13479]
gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
13479]
Length = 164
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 101/161 (62%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL+ P++P NTG I RTC A+ LHL+ PLGF+++D +KRAGLDYW + + V+
Sbjct: 1 MNVVLLEPEMPANTGNIGRTCVATGTKLHLIEPLGFRLNDKLIKRAGLDYWDKLDVTVY- 59
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+++D+ + G K +A TK G +S++ Y +L+FG E++G+P E LL+ +
Sbjct: 60 --CDYQDFLERNPGAKIYMATTK-GLKVYSDVEYEPDCFLMFGKESAGIPEEILLENQEQ 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM +R LNLS SV I +YEA RQ +E++
Sbjct: 117 -----CVRIPMWGD-IRSLNLSNSVSIVLYEALRQNGFEKM 151
>gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus
Ueda107]
Length = 154
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R A + C LHL+ PLGF +D+ + RAG+DY +++H
Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLAANTGCQLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W ++F QE RL A + +G+ HS+ + GDYL+FG E+ GLP D
Sbjct: 61 ASW----EHFLVQEQPTRLFALSTKGSQCHSDAQFAAGDYLLFGPESRGLPA----DIRE 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+RIPM R +NLS +V + VYEA RQL Y
Sbjct: 113 SLPANQVLRIPMAANS-RSMNLSNAVAVMVYEAWRQLGY 150
>gi|347530580|ref|YP_004837343.1| TrmH family RNA methyltransferase [Roseburia hominis A2-183]
gi|345500728|gb|AEN95411.1| RNA methyltransferase, TrmH family, group 2 [Roseburia hominis
A2-183]
Length = 171
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 12/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG I RTC A+ LHL+ PLGF +D+ +KRAG+DYW + + +
Sbjct: 8 LNVVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFHLDEKAIKRAGMDYWSELDVTTYV 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W D+ + G K +A TK G ++E+SY Y++FG E++G+ PE +L +
Sbjct: 68 NW---EDFCEKNPGAKIYMATTK-GRHVYTEVSYEPDCYIMFGKESAGI-PEEILKANPD 122
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +RIPM+ ET R LNLS SV I +YEA RQ ++ +K
Sbjct: 123 T----CVRIPMIGET--RSLNLSNSVAIVLYEALRQNEFDHMK 159
>gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
NRL30031/H210]
gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
NRL30031/H210]
Length = 154
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 95/153 (62%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VL P+IP NTG I R CA + LHLV PLGF +D +K+KRAGLDY + + VH
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHEN- 62
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F D + EG +R+ A T +G++ E+S+R+GD L+FG ET GLP E L + +
Sbjct: 63 --FDDCLKALEG-RRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDNLPA--- 116
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G IR+PM+ R +NLS +V + ++EA RQ
Sbjct: 117 -GQKIRLPMMPDS-RSMNLSNTVAVILFEAWRQ 147
>gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
Length = 154
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 90/156 (57%), Gaps = 10/156 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG +ARTCA + C LHLVG LGF DD +LKRAGLDYW + I+ H
Sbjct: 1 MHIVLFEPEIPANTGNVARTCAVTGCTLHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + + E G ++E++Y D+L+FG ET GLP + + E
Sbjct: 61 SLEELWELYP----EGVFHYVETEGGRWYTEVAYGPNDFLVFGKETKGLPKDVI-----E 111
Query: 199 TFGGGTIRIPMVE-TYVRCLNLSVSVGIAVYEAARQ 233
+RIPM++ R LNLS +V + V+EA RQ
Sbjct: 112 AHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147
>gi|373252980|ref|ZP_09541098.1| rRNA methylase [Nesterenkonia sp. F]
Length = 178
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L+V++ P+IPGNTG + R A + LHL PLGF D KL+RAGLDY V+ VH
Sbjct: 26 LRVLVDQPEIPGNTGNMIRLAAVTGAELHLAEPLGFDFADAKLRRAGLDYHDLAVLTVHP 85
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ R + RL AFT GT++H+ I YR GD L+FG E++GL E D
Sbjct: 86 DLETALERLRPE----RLFAFTGEGTTSHTAIDYRDGDVLLFGRESTGLDDEVKADARVT 141
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+RIPM+ + R LNL+ SV IAVYEA RQ ++
Sbjct: 142 DL----VRIPMLPSR-RSLNLANSVSIAVYEAWRQQGFD 175
>gi|376295498|ref|YP_005166728.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
ND132]
gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
ND132]
Length = 153
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 90/157 (57%), Gaps = 12/157 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IP NTG IAR CAA+ LHL+ PLGF +DD LKRAGLDYWP V + VH
Sbjct: 1 MRIVLFEPEIPPNTGNIARLCAATRTPLHLIEPLGFSIDDKHLKRAGLDYWPAVDLTVHP 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ D+F RL+ T + H ++R D ++ G ET GLP E +
Sbjct: 61 DF----DHFLATVAPPRLVMATTKARIAHHRFAFRADDAIVLGPETRGLPMELM------ 110
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
G +RIP + VR LNLS + GI ++EA RQ +
Sbjct: 111 -EGHAMVRIP-IWGEVRSLNLSTATGILLFEALRQTD 145
>gi|450115052|ref|ZP_21863711.1| putative rRNA methylase [Streptococcus mutans ST1]
gi|449228521|gb|EMC27886.1| putative rRNA methylase [Streptococcus mutans ST1]
Length = 182
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFANKTYSDKNYDDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396]
gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC
2396]
Length = 154
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA LHL+ PLGF DD +L+RAGLDY Y +K H
Sbjct: 1 MLNIVLFQPEIPPNTGNIIRLCANCGFTLHLIEPLGFTWDDKRLQRAGLDYHEYAPVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ +F D R ++ A + RG S + E+S+ GD L+FG ET GLP + L + S
Sbjct: 61 GDFQQFLDEVR----PNKVYALSTRGKSYYHEVSFAAGDALVFGPETRGLPQQMLDELGS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E+ +R+PM + R LNLS +V + YEA RQL +E
Sbjct: 117 ES----CLRVPMRQD-SRSLNLSNTVALVSYEAWRQLGFE 151
>gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
Length = 180
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 17 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 76
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q EG+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 77 ---LEDFMSQMEGKLYLISKFAEKVYSEVDLSTDENHYFLFGREDKGLPEDFMREHPEK- 132
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 133 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 178
>gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
KF-1]
gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
KF-1]
Length = 164
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 7/159 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV+P+IP NTG + R A + C LHL+ PLGF ++D ++RAGLDY Y + H
Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W F D Q +R+ A T +S + ++ GD+L+FGSE+ GLPPE +
Sbjct: 61 ASWDAFIDSC--QPRRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM+ + R LNLS +V + V+EA RQ +
Sbjct: 119 EQ----RLRLPMLASQ-RSLNLSNAVAVTVFEAWRQQGF 152
>gi|418440|sp|P32813.1|TRML_GEOSE RecName: Full=Putative tRNA (cytidine(34)-2'-O)-methyltransferase;
AltName: Full=ORF3; AltName: Full=tRNA
(cytidine/uridine-2'-O-)-methyltransferase
gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli;
ORF3 [Geobacillus stearothermophilus]
Length = 157
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD L+RAGLDYW +V I +
Sbjct: 3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
+ D+F QQ TK G ++ + K + IFG ET+GLP E L +
Sbjct: 63 SL----DHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAEN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM E VR LNLS + I VYEA RQ ++ L
Sbjct: 119 EDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156
>gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase SpoU [Ethanoligenens harbinense YUAN-3]
gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
Length = 169
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L + L+ P+IP NTG +ARTCAA+ LHLV PLGF +DD KLKRAGLDYW + I +
Sbjct: 1 MLHIALIEPEIPQNTGNVARTCAATGAHLHLVKPLGFAIDDAKLKRAGLDYWHLLNITYY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A D+ R+ G F+ + +++++ Y L+FG ET+GLP E LL
Sbjct: 61 ENLA---DFLRRAPGP--CFFFSSKAPRSYTDVHYPPDACLVFGKETAGLPEELLL---- 111
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+R+P + RCLNLS +V + YEA RQ ++ L+
Sbjct: 112 -AHEDSAVRLP-IRAEARCLNLSNAVAVGAYEALRQWDFSGLRA 153
>gi|374317526|ref|YP_005063954.1| putative rRNA methylase SpoU family [Sphaerochaeta pleomorpha str.
Grapes]
gi|359353170|gb|AEV30944.1| putative rRNA methylase SpoU family [Sphaerochaeta pleomorpha str.
Grapes]
Length = 168
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 93/162 (57%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG IARTCAA LHLV PLG+ +D+ LKRAGLDYW V I +
Sbjct: 3 LNIVLFEPEIPQNTGNIARTCAAINARLHLVHPLGYSLDEKHLKRAGLDYWHLVTITEYE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ A F + G+ L FT + +++ISY YL+FG E++G+ L+
Sbjct: 63 SVAAFMEI----HGKDNLYFFTTKAHCDYTDISYSDDTYLVFGKESAGIDEHILV----- 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM+E R LNLS SV IA YE RQ + L+
Sbjct: 114 SHPDACVRIPMIEE-ARSLNLSNSVAIAAYEYMRQKQFPSLQ 154
>gi|418968145|ref|ZP_13519769.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
SK616]
gi|383341054|gb|EID19325.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
SK616]
Length = 167
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q EG+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMEGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
>gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2
[Succinatimonas hippei YIT 12066]
gi|322416000|gb|EFY06702.1| RNA methyltransferase, TrmH family, group 2 [Succinatimonas hippei
YIT 12066]
Length = 156
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VL PQ+P N G I R A LH VGPL F +DD K+ RAGLDY + VH
Sbjct: 1 MINIVLYRPQMPQNAGNIIRLSANCGAKLHFVGPLDFFMDDKKMLRAGLDYHEIANLTVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+++ + F + KRL+A T GT+T S+ S+ D+L+FG ETSGLP E ++
Sbjct: 61 TSF----EKFMENMNPKRLIASTIHGTATPSDFSFEDEDFLLFGRETSGLPDE-VMQIIP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E F +RIPMVE RCLNLS +V + YEA RQL +
Sbjct: 116 EKF---RLRIPMVEKS-RCLNLSNAVAVMAYEAWRQLGF 150
>gi|363896812|ref|ZP_09323361.1| hypothetical protein HMPREF9624_02105 [Oribacterium sp. ACB7]
gi|361960377|gb|EHL13626.1| hypothetical protein HMPREF9624_02105 [Oribacterium sp. ACB7]
Length = 173
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 9/165 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I RTC A++ LHL+ P GF ++ +K+AG+DYW ++ +K H
Sbjct: 1 MNIVLHEPEIPFNTGAIGRTCVATSTRLHLIKPYGFILNSKNIKKAGMDYWEHLKLKEHL 60
Query: 139 TWAEF-RDYFRQQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
++ +F +D +Q ++ T + T++E+S+ + DY++FG E++G+P E L++
Sbjct: 61 SYEDFLKDIAEEQNSVSPPKIWYATTKAKRTYTEVSFSENDYIMFGKESAGIPEEILVEN 120
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
IRIPM+E R LNLS SV I +YE RQ +++ LK
Sbjct: 121 EEH-----CIRIPMLEE-ARSLNLSNSVAIILYETLRQQDFKSLK 159
>gi|426407194|ref|YP_007027293.1| RNA methyltransferase [Pseudomonas sp. UW4]
gi|426265411|gb|AFY17488.1| RNA methyltransferase [Pseudomonas sp. UW4]
Length = 151
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPAEVLDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
29176]
gi|197299503|gb|EDY34023.1| putative RNA methyltransferase, TrmH family, group 2 [Ruminococcus
lactaris ATCC 29176]
Length = 169
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGF++++ LKRAG+DYW + +
Sbjct: 1 MLNIVLFEPEIPANTGNIGRTCVATGTRLHLIEPLGFRINEKSLKRAGMDYWKDLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+T+ ++D+ + G K +A TK ++E+ Y + Y++FG E++G+P E L+D
Sbjct: 58 TTYINYQDFLDKNPGAKIYMATTK-AHKVYTEVDYEQDCYIMFGKESAGIPEEILVDHEE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ +RIPM+ +R LNL SV I +YEA RQ +E +
Sbjct: 117 D-----CMRIPMIGD-IRSLNLGNSVAIVLYEALRQNGFEGM 152
>gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|407692962|ref|YP_006817751.1| tRNA/rRNA methyltransferase [Actinobacillus suis H91-0380]
gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|407389019|gb|AFU19512.1| tRNA/rRNA methyltransferase [Actinobacillus suis H91-0380]
Length = 159
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF DD KL+R+GLDY +V I+
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQ-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F D F ++ KRL A T +G HSE+SY GD+L+FG E+ G+ P A+LD
Sbjct: 59 -KYKNFED-FLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGI-PMAILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ IR+PM + R +NLS +V + VYEA RQ Y+
Sbjct: 116 MS---QKIRVPMCKD-SRSMNLSNTVAVVVYEAWRQFGYQ 151
>gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
LMD-9]
gi|386343898|ref|YP_006040062.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus JIM
8232]
gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus
LMD-9]
gi|339277359|emb|CCC19107.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus JIM
8232]
Length = 169
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 97/165 (58%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 5 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+ F + RL TK T+SE Y G+ Y +FG E +GLP + + +
Sbjct: 65 LAD----FMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ +E L+ +
Sbjct: 121 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELS 160
>gi|366166370|ref|ZP_09466125.1| RNA methyltransferase [Acetivibrio cellulolyticus CD2]
Length = 164
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG I RTCAA LHL+ PLGF V+D LKRAGLDYW V I +
Sbjct: 3 INIVLVEPEIPQNTGNIVRTCAAVGARLHLIKPLGFSVEDKYLKRAGLDYWNEVDISYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ E ++ + G A TK ++EI Y +L+FG ET GLP + L+D
Sbjct: 63 SFQELKEKYT---GCSFYYATTK-AVKNYAEIEYPDNCFLVFGKETKGLPEDILVDNRE- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
IRIPM+ +R LNLS SV I VYE RQ N++ + T
Sbjct: 118 ----WCIRIPMIGE-IRSLNLSNSVAIIVYETLRQKNFDGMTT 155
>gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
14977]
gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
14977]
Length = 149
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 11/154 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
++VL P+IP N G +ART AA+ LHLV P GF+ D +LKRAGLDYWP+V +H +
Sbjct: 3 RIVLYEPEIPQNVGNVARTAAATRTELHLVRPFGFRWGDPRLKRAGLDYWPHVRYVLHDS 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
W F + R+ AF+ + + E+ + DYL+FG ET GLP L +
Sbjct: 63 WTAFLEAL---PAGARVWAFSTKAERSLYEVRFHPDDYLLFGPETRGLPQAVLARFPA-- 117
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+RIPM VR LNL+VSVG+AVYE RQ
Sbjct: 118 -----LRIPMPGP-VRSLNLAVSVGVAVYEVLRQ 145
>gi|24380081|ref|NP_722036.1| rRNA methylase [Streptococcus mutans UA159]
gi|449864935|ref|ZP_21778711.1| putative rRNA methylase [Streptococcus mutans U2B]
gi|449872798|ref|ZP_21781614.1| putative rRNA methylase [Streptococcus mutans 8ID3]
gi|449904793|ref|ZP_21792855.1| putative rRNA methylase [Streptococcus mutans M230]
gi|449908715|ref|ZP_21793912.1| putative rRNA methylase [Streptococcus mutans OMZ175]
gi|449929606|ref|ZP_21801665.1| putative rRNA methylase [Streptococcus mutans 3SN1]
gi|449947473|ref|ZP_21807418.1| putative rRNA methylase [Streptococcus mutans 11SSST2]
gi|449984238|ref|ZP_21818924.1| putative rRNA methylase [Streptococcus mutans NFSM2]
gi|450071395|ref|ZP_21848129.1| putative rRNA methylase [Streptococcus mutans M2A]
gi|450087382|ref|ZP_21854231.1| putative rRNA methylase [Streptococcus mutans NV1996]
gi|450106810|ref|ZP_21860700.1| putative rRNA methylase [Streptococcus mutans SF14]
gi|450124957|ref|ZP_21867352.1| putative rRNA methylase [Streptococcus mutans U2A]
gi|450132547|ref|ZP_21870123.1| putative rRNA methylase [Streptococcus mutans NLML8]
gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159]
gi|449153016|gb|EMB56709.1| putative rRNA methylase [Streptococcus mutans NLML8]
gi|449154290|gb|EMB57888.1| putative rRNA methylase [Streptococcus mutans 8ID3]
gi|449164311|gb|EMB67377.1| putative rRNA methylase [Streptococcus mutans 3SN1]
gi|449168658|gb|EMB71466.1| putative rRNA methylase [Streptococcus mutans 11SSST2]
gi|449180489|gb|EMB82646.1| putative rRNA methylase [Streptococcus mutans NFSM2]
gi|449212415|gb|EMC12783.1| putative rRNA methylase [Streptococcus mutans M2A]
gi|449218050|gb|EMC18073.1| putative rRNA methylase [Streptococcus mutans NV1996]
gi|449222863|gb|EMC22576.1| putative rRNA methylase [Streptococcus mutans SF14]
gi|449233136|gb|EMC32220.1| putative rRNA methylase [Streptococcus mutans U2A]
gi|449258967|gb|EMC56519.1| putative rRNA methylase [Streptococcus mutans M230]
gi|449262623|gb|EMC60070.1| putative rRNA methylase [Streptococcus mutans OMZ175]
gi|449264567|gb|EMC61905.1| putative rRNA methylase [Streptococcus mutans U2B]
Length = 182
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|399522782|ref|ZP_10763445.1| Protein-export protein secB [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399109646|emb|CCH40006.1| Protein-export protein secB [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 154
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ PLGF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
D G+ RL AFT +G+ EI+Y+ GD +FG E+ GLP +D +
Sbjct: 61 PDLQSCLDSL----GQPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLP----VDVRN 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+R+PM R LNLS +V + VYEA RQ
Sbjct: 113 ALPPEQRVRLPM-RAGCRSLNLSNTVAVTVYEAWRQ 147
>gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
Length = 168
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I S
Sbjct: 5 HIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDI---SY 61
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ D+ + +G+ L++ + + S Y +FG E GLP E + +
Sbjct: 62 YESLEDFMEKMDGQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEK- 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ + +D+
Sbjct: 121 ----ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFVGLELVHEYEVDK 166
>gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative
[Mariprofundus ferrooxydans PV-1]
gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative
[Mariprofundus ferrooxydans PV-1]
Length = 155
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 11/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VLV P+IP NTG IAR C + LHLV PLGF VDD LKRAGLDYW Y+ + H
Sbjct: 5 LHIVLVEPEIPPNTGNIARLCGCTGAALHLVHPLGFSVDDRSLKRAGLDYWQYLDVTHHD 64
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+W + R +G + + + +++ +++Y GD L+FG ET GL L +
Sbjct: 65 SWQQLRSSL---DGNRNWYGMSSKASTSFWDVTYSHGDVLVFGPETRGLSAAILAEIQPL 121
Query: 199 TFGGGTIRIPM-VETYVRCLNLSVSVGIAVYEAARQLNYEQ 238
T +PM + VR LNL+ GI ++EA RQL ++
Sbjct: 122 T-------VPMRADAPVRSLNLATVCGITLFEALRQLKADR 155
>gi|398939058|ref|ZP_10668277.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM41(2012)]
gi|398164694|gb|EJM52824.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM41(2012)]
Length = 151
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ +GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
7061]
gi|389575391|ref|ZP_10165439.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. M 2-6]
gi|407979712|ref|ZP_11160521.1| rRNA methyltransferase-like protein [Bacillus sp. HYC-10]
gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
7061]
gi|388424944|gb|EIL82781.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. M 2-6]
gi|407413627|gb|EKF35320.1| rRNA methyltransferase-like protein [Bacillus sp. HYC-10]
Length = 157
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 90/164 (54%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW Y + H
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWKYANVVYHD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + + + TK G H+ Y + D + +FG ETSGLP + +
Sbjct: 63 SLDE----LFEAHPKGQFFYITKFGQKPHTTFDYSQLDEDYFFVFGRETSGLPKDLI--- 115
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E +VR LNLS + I VYEA RQ Y L
Sbjct: 116 --ERNMDRCLRLPMTE-HVRSLNLSNTAAILVYEALRQQQYRDL 156
>gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
Length = 159
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF DD KLKR+GLDY +V I+ +
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDYHEFVDIQKY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F + KRL A T +G HS++ Y GD+L+FG E+ G+ P+A+LD
Sbjct: 61 KNF----DDFLARAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGI-PKAILDTLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS SV + VYEA RQ Y
Sbjct: 116 MS---QKIRIPMCKD-SRSMNLSNSVAVVVYEAWRQFGY 150
>gi|449981021|ref|ZP_21817561.1| putative rRNA methylase [Streptococcus mutans 5SM3]
gi|449176209|gb|EMB78568.1| putative rRNA methylase [Streptococcus mutans 5SM3]
Length = 182
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD ++KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKRMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + T + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHTEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Pseudogulbenkiania
ferrooxidans 2002]
gi|347537975|ref|YP_004845399.1| TrmH family RNA methyltransferase [Pseudogulbenkiania sp. NH8B]
gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Pseudogulbenkiania
ferrooxidans 2002]
gi|345641152|dbj|BAK74985.1| RNA methyltransferase, TrmH family, group 2 [Pseudogulbenkiania sp.
NH8B]
Length = 154
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 92/156 (58%), Gaps = 9/156 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
VVL P+IP NTG + R CA + C LHLV PLGF +DD KL+RAGLDY Y + VH W
Sbjct: 4 VVLFQPEIPPNTGNVIRLCANTGCELHLVKPLGFPLDDAKLRRAGLDYHEYARLVVHENW 63
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
R +R+ A T +G + H + ++R GD L+FG E+ GLP E L ++
Sbjct: 64 EACRTAL----SGRRIFAATTKGATRHDQTAFRPGDVLLFGPESRGLPQEVLDSFPADR- 118
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM + R +NLS +V + V+EA RQ ++
Sbjct: 119 ---RVRLPM-QPESRSMNLSNAVAVMVFEAWRQNDF 150
>gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis
Bu]
Length = 156
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + +++ GD+ +FGSET GLP L
Sbjct: 61 PDWDAF--VAAETPDPARMFAFTTRGSGRFHDHAFQPGDWFVFGSETRGLPAPLL----- 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E F +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 114 ERFANAQRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|407718486|ref|YP_006795891.1| rRNA methylase (SpoU class) [Leuconostoc carnosum JB16]
gi|407242242|gb|AFT81892.1| rRNA methylase (SpoU class) [Leuconostoc carnosum JB16]
Length = 170
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P +P NTG IART A + LHL+ PLGF++DD +KRAGLDYW YV + H +
Sbjct: 4 HIVLFEPLMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDYVQLVRHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY--RKGD-YLIFGSETSGLPPEALLDCT 196
D+ + E L +K +++ Y + GD Y +FG ET+GL PE +
Sbjct: 64 ---LPDFLATLKAEDHLYLVSKFANMDYTQPDYGEKNGDHYFLFGKETTGL-PEVFMRQN 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
E IRIP +T++R LNLS +V I +YEA RQ N++ L T
Sbjct: 120 PEK----AIRIPQDDTHIRSLNLSNTVAIVLYEALRQQNFQSLDT 160
>gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
NJ9703]
gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
NJ9703]
Length = 157
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VL P+IP NTG I R CA + LHLV PLGF +D +K+KRAGLDY + + VH
Sbjct: 7 IVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLAVHEN- 65
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F D + EG +R+ A T +G++ E+S+R+GD L+FG ET GLP E L +
Sbjct: 66 --FEDCLKALEG-RRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDSLPA--- 119
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G IR+PM+ R +NLS +V + ++EA RQ
Sbjct: 120 -GQKIRLPMMPDS-RSMNLSNTVAVILFEAWRQ 150
>gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase SpoU [Clostridium cellulolyticum H10]
gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
Length = 164
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VLV P+IP NTG I RTCAA+ LHLVGPLGF ++D LKRAGLDYW ++ ++
Sbjct: 3 FNIVLVEPEIPQNTGNIVRTCAATGSVLHLVGPLGFSIEDKYLKRAGLDYWNEADVRYYN 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
D F+++ K T + + + +++ +++FG ET+GLP E LL E
Sbjct: 63 NL----DEFKKKNVGKTFYYSTTKAVNNYCNVNFEDDCFIVFGKETAGLPEE-LLKGNKE 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
IRIPM + +R LNLS S I +YEA RQ N++++K
Sbjct: 118 Y----CIRIPM-KNGIRSLNLSNSAAIVLYEALRQQNFKEMKV 155
>gi|335039925|ref|ZP_08533067.1| RNA methyltransferase, TrmH family, group 2 [Caldalkalibacillus
thermarum TA2.A1]
gi|334180169|gb|EGL82792.1| RNA methyltransferase, TrmH family, group 2 [Caldalkalibacillus
thermarum TA2.A1]
Length = 155
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+VL P+IP NTG IARTCAA+ LH++ P+GF DD LKRAG DYW V I +
Sbjct: 3 FHIVLYQPEIPYNTGNIARTCAATQTPLHIIRPMGFSTDDRMLKRAGCDYWHAVEIHYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ E + +G + TK ++++ YR GD+ +FG ET+G+P + L E
Sbjct: 63 SLEEL---LSKYKGHRFFFVETK-APRLYTDVKYRDGDFFVFGKETNGIPQDIL-----E 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM +VR LNLS + I VYEA RQ+++ L+
Sbjct: 114 QHRDTWVRIPMSTEHVRSLNLSNTAAIMVYEALRQVSFFDLQ 155
>gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
DSM 2876]
gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
DSM 2876]
Length = 164
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 10/163 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P++P NTG I RTC A+ LHL+ PLGF+++D LKRAGLDYW + ++++
Sbjct: 1 MLNIVLHEPEMPANTGNIGRTCVATDTVLHLIEPLGFKINDKMLKRAGLDYWDKLDVRIY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+F D+ + G K +A TK S ++++ Y Y++FG E++G+ PE++L
Sbjct: 61 D---DFDDFLAKNPGAKIYMATTKAARS-YTDVQYEDDCYIMFGKESAGI-PESILQKYQ 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+T +RIPM +R LNLS SV I +YEA RQ N+ LK
Sbjct: 116 DT----AVRIPMWGD-IRSLNLSNSVAIVLYEALRQNNFLGLK 153
>gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
Length = 159
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ PLGF DD KLKR+GLDY +V I+ +
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDYHEFVDIQKY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D F + KRL A T +G HS++ Y GD+L+FG E+ G+ P+A+LD
Sbjct: 61 KNF----DDFLARAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGI-PKAILDTLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM + R +NLS SV + VYEA RQ Y
Sbjct: 116 MS---QKIRIPMCKD-SRSMNLSNSVAVVVYEAWRQFGY 150
>gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 151
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAT----CLEKIGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 DQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|422648342|ref|ZP_16711465.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 151
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLNS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 DH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|66048105|ref|YP_237946.1| RNA methyl transferase TrmH [Pseudomonas syringae pv. syringae
B728a]
gi|422673007|ref|ZP_16732369.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aceris str. M302273]
gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
syringae B728a]
gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
aceris str. M302273]
Length = 151
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G R+ AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAS----CLEKIGNPRVFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|398881852|ref|ZP_10636825.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM60]
gi|398199871|gb|EJM86802.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM60]
Length = 151
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G R+ AFT +G+ + S+ +GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRVFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|264680077|ref|YP_003279986.1| TrmH family RNA methyltransferase [Comamonas testosteroni CNB-2]
gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
CNB-2]
Length = 164
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 7/159 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV+P+IP NTG + R A + C LHL+ PLGF ++D ++RAGLDY Y + H
Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W F + + Q +R+ A T +S + ++ GD+L+FGSE+ GLPPE +
Sbjct: 61 ASWDAFLETCQPQ--RERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM+ + R LNLS +V + V+EA RQ +
Sbjct: 119 EQ----RLRLPMLASQ-RSLNLSNAVAVTVFEAWRQQGF 152
>gi|423098015|ref|ZP_17085811.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
fluorescens Q2-87]
gi|397886359|gb|EJL02842.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
fluorescens Q2-87]
Length = 151
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP E L +
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFVAGDAFLFGPESRGLPAEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ ++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNGFQ 151
>gi|406669188|ref|ZP_11076468.1| RNA methyltransferase, TrmH family, group 2 [Facklamia ignava CCUG
37419]
gi|405583985|gb|EKB57911.1| RNA methyltransferase, TrmH family, group 2 [Facklamia ignava CCUG
37419]
Length = 176
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P +P NTG IARTCAA+ LHL+ PLGF +D LKRAGLDYW V I H
Sbjct: 5 HIVLFEPVMPANTGNIARTCAATNSALHLIHPLGFSTEDRMLKRAGLDYWDKVEIYEHDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRK----GDYLIFGSETSGLPPEALLDC 195
A F + ++ L TK +SE + Y IFG ET+GLP E +
Sbjct: 65 LATFMKDIQPEQ----LFLITKFAHHIYSEANLADETYPDQYFIFGKETTGLPIEFM--- 117
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
E T+RIPM + +VR LNLS + I ++EA RQ N+ L+T
Sbjct: 118 --EAHEEKTLRIPMNDEHVRSLNLSNTANIILFEALRQQNWANLET 161
>gi|310658411|ref|YP_003936132.1| putative rRNA methylase [[Clostridium] sticklandii]
gi|308825189|emb|CBH21227.1| putative rRNA methylase [[Clostridium] sticklandii]
Length = 151
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 82 VLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWA 141
+LV P+IP NTG I RTCA LHL+ P+GF +D+ +LKRAGLDY V I + ++
Sbjct: 1 MLVEPEIPQNTGNIIRTCACINARLHLIKPMGFSMDEKQLKRAGLDYMDLVSINYYDSFE 60
Query: 142 EFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFG 201
E + + + FT + H+E +Y Y++FG ET GL E L
Sbjct: 61 E----LIEDKDINKFYFFTTKAKKNHTEATYEDESYIVFGKETKGLSQEIL-----SLNP 111
Query: 202 GGTIRIPMVET-YVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+ VR LNLS SV IA YEA RQ++Y++L+
Sbjct: 112 NNNVRIPMLNMDRVRSLNLSNSVAIAAYEAIRQIDYKELR 151
>gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599]
gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC
100599]
Length = 156
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 8/161 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P IP NTG IAR+CAA+ LHL+ PLGF DD LKRAGLDYW V + H
Sbjct: 3 LHIVLHEPLIPANTGNIARSCAATGAHLHLIHPLGFSTDDRYLKRAGLDYWHAVNVHHHE 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ F + Q EG G ++++++R GDY+I G ET+GLP E +E
Sbjct: 63 SFEHFVE--AQGEGAGTFYFVETWGEKLYTDVAFRDGDYIILGKETTGLPEE-----LTE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ TIRIPM R +NLS I ++E RQL + L
Sbjct: 116 KYREQTIRIPMSGA-TRSVNLSNCAAIVLFEGLRQLGFPSL 155
>gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
14600]
gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
14600]
Length = 169
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L ++L P+IP NTG I RTC A LHL+ PLGF ++D L RAG+DYW + ++ +
Sbjct: 3 LNIILHEPEIPANTGNIGRTCVAIGATLHLIEPLGFVINDKNLARAGMDYWKQLDVRTYL 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W + F + + R+ T +G +S++SY DY++FG E++G+P E L+
Sbjct: 63 DWED----FCAKNPDARIWMATTKGRHVYSDVSYGPDDYIMFGKESAGIPEEILIRQPER 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
IRIPM + +R LNLS SV I YEA RQ +++++ T
Sbjct: 119 -----CIRIPM-QGEIRSLNLSNSVAIVAYEALRQNHFDKMTT 155
>gi|377819654|ref|YP_004976025.1| TrmH family RNA methyltransferase [Burkholderia sp. YI23]
gi|357934489|gb|AET88048.1| RNA methyltransferase, TrmH family [Burkholderia sp. YI23]
Length = 156
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVLV P+IP NTG + R CA + LHL+ PLGF +DD KL+RAGLDY Y + VH+
Sbjct: 2 FNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAEMNVHA 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F ++ R+ AFT RG++ + ++ GD+ +FG+ET GL P L +E
Sbjct: 62 NWDAF--IAKEAPDATRMFAFTTRGSTPFFDHAFAPGDWFVFGAETRGLAPALLERFPTE 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V I +EA RQ +E
Sbjct: 120 Q----RVRLPM-RPGNRSLNLSNTVAIVTFEAWRQAGFE 153
>gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase SpoU [Coraliomargarita akajimensis DSM
45221]
gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
DSM 45221]
Length = 150
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL +P+IP NTG I R CA + LHL+ PLGF + D LKR+G+DYW + + H
Sbjct: 1 MLHIVLFNPEIPQNTGNIGRLCAITESRLHLIHPLGFTITDKHLKRSGMDYWHSLDVHHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F+ KRL FT + ++ ++ Y D L+FG+E G P D
Sbjct: 61 DNWDAFK---ASPHAPKRLWLFTTKADHSYWDVEYSNDDGLLFGNEGHGAP-----DWLH 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
G + IP +R LNLS SVGIA YEA RQL
Sbjct: 113 HELEGQRLTIPHKNDSLRSLNLSTSVGIAAYEALRQL 149
>gi|445494958|ref|ZP_21462002.1| tRNA (cytosine34-2'-O-)-methyltransferase TrmL [Janthinobacterium
sp. HH01]
gi|444791119|gb|ELX12666.1| tRNA (cytosine34-2'-O-)-methyltransferase TrmL [Janthinobacterium
sp. HH01]
Length = 156
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF ++D+KLKRAGLDY Y +KVH
Sbjct: 1 MFHVVLVQPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDSKLKRAGLDYHEYAQMKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F Q R+ A T G+S ++ +++ GD +FGSET GL P
Sbjct: 61 KDWQAF--LAEVQPDPARMYAMTTHGSSPFADAAFKPGDVFVFGSETRGLDP-----AFR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
ETF IR+PM R LNLS +V + V+EA RQ Y
Sbjct: 114 ETFPPAQRIRLPMRPDN-RSLNLSNTVAVVVFEAWRQNGY 152
>gi|422588058|ref|ZP_16662727.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422654494|ref|ZP_16717234.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 151
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A ++ G RL AFT +G+ + S+ GD +FG E+ GLP + L +S
Sbjct: 61 ADLAS----CLEKIGNPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 DQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
gi|149832856|gb|EDM87939.1| putative RNA methyltransferase, TrmH family, group 2 [Ruminococcus
obeum ATCC 29174]
Length = 166
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 99/162 (61%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL+ P+IP NTG I RTC A+ LHL+ PLGF + + LKRAG+DYW + + +
Sbjct: 4 LNIVLLEPEIPANTGNIGRTCVATDTKLHLIEPLGFSLSEKALKRAGMDYWKDLDV---T 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ ++ D+ + K A TK T++++ Y + Y++FG E++G+P E L++
Sbjct: 61 TYLDYEDFLEKNPNAKIYYATTK-ALKTYTDVQYEEDCYIMFGKESAGIPEEILME---- 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+ +R LNLS SV I +YEA RQ +++ ++
Sbjct: 116 -HKDNCVRIPMINE-IRSLNLSNSVAIVLYEALRQNHFDHMQ 155
>gi|261856917|ref|YP_003264200.1| TrmH family RNA methyltransferase [Halothiobacillus neapolitanus
c2]
gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
neapolitanus c2]
Length = 159
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VL P+IP NTG I R CA + LHLV PLGF ++ L+RAGLDY + + VH
Sbjct: 1 MIDIVLFEPEIPPNTGNIIRLCANTGVRLHLVEPLGFSMETKALRRAGLDYHEFAEVTVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S WA R +G +RL A T +G+++ + GD L+FG ET GLPP L + +
Sbjct: 61 SDWAALRSVL---DG-RRLFAMTTKGSTSFYAARFEAGDVLVFGPETRGLPPHILAEFDA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ +R+PM + R LNLS +V IAVYE RQL++
Sbjct: 117 DS----RLRLPM-KPDSRSLNLSNTVAIAVYEVWRQLDF 150
>gi|347534683|ref|YP_004841353.1| tRNA/rRNA methyltransferase [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504739|gb|AEN99421.1| Uncharacterized tRNA/rRNA methyltransferase [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 174
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+ L P +P NTG IARTCA + L L+ PLGF +DD LKRAGLDYW V I H +
Sbjct: 4 HIALFEPLMPANTGNIARTCAGTDTVLDLIKPLGFTIDDKHLKRAGLDYWDKVEINYHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
EF + ++ + F K + H ++ Y +FG ET+GLP + +
Sbjct: 64 LPEFLETVENKQNLFLVSKFGKFNYTDHDYSDVKEDRYFLFGKETTGLPEKF-----EQK 118
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ IRIP ++++R LNLS S I +YEA RQ N+ L + D+
Sbjct: 119 YAQQAIRIPQDDSHIRALNLSNSAAIVIYEALRQQNFAGLNKVHNYEHDK 168
>gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48]
gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas
entomophila L48]
Length = 153
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+ F++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ E++Y+ GD +FG E+ GLP E L +
Sbjct: 61 ESLAGCLESL----GNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM R LNLS +V + VYEA RQ +
Sbjct: 117 EQ----RLRLPM-RPGCRSLNLSNTVAVTVYEAWRQQGF 150
>gi|363889772|ref|ZP_09317126.1| hypothetical protein HMPREF9628_01622 [Eubacteriaceae bacterium
CM5]
gi|361966311|gb|EHL19231.1| hypothetical protein HMPREF9628_01622 [Eubacteriaceae bacterium
CM5]
Length = 156
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LH++ P GF + + +KR+G+DY Y I+ +
Sbjct: 3 LNIVLFEPEIPANTGNIIRTCVCTNTTLHMIRPFGFSMSEKMIKRSGMDYIQYADIRYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F +Y+ + + EK + FT + HS++ Y+ GD+LIFG E+ GL PE + +
Sbjct: 63 S---FEEYYEKYDKEK-MYFFTTKARHKHSDVVYKDGDHLIFGPESRGL-PEKIRSINEQ 117
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM+ +VR LNLS SV I ++EA RQ++Y++
Sbjct: 118 ----NNVRIPMLFNEHVRSLNLSNSVAIGLFEALRQIDYKEF 155
>gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13]
Length = 163
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E ++ E TK G H+ Y K D + +FG ET+GLP + +
Sbjct: 63 SLDE----LFEKNKEAEFFYITKFGMKPHTSFDYSKLDKDYFFVFGRETTGLPKDLIQSN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ +R+PM + VR LNLS + I +YEA RQ +Y L
Sbjct: 119 LDQ-----CLRLPMTKN-VRSLNLSNTAAILIYEALRQQDYPNL 156
>gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
Length = 156
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L + L P+IP NTG I R A + LHL+ PLGF +++ KL+RAGLDY + ++VH
Sbjct: 1 MLHIALFEPEIPPNTGNIIRLAANTGAQLHLIEPLGFSLEEKKLRRAGLDYSEFAALQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+A F++ Q RL A T +G+ HSE ++ GD L+FG ET GL P+ +L
Sbjct: 61 RDFAAFQESIAGQ----RLFAMTTKGSRPHSEACFQDGDVLLFGPETRGL-PDPILKSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
T +R+PMV R LNLS +V + +YEA RQL YE
Sbjct: 116 PT---QRLRLPMVADS-RSLNLSNAVAVTLYEAWRQLGYE 151
>gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [gamma proteobacterium HTCC2207]
gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
Length = 154
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF +DD KL+RAGLDY + +KVH
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGFRLHLIEPLGFDLDDKKLRRAGLDYREFQSLKVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ + +RQ + K++ A + +GT +S + +GD L+FG ET GLP + +
Sbjct: 61 ASL----EAYRQSQQPKKIYALSTKGTVCYSSARFEEGDALLFGPETRGLPADVRDGLGT 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM + R LNLS +V I VYEA RQL++
Sbjct: 117 EQ----VLRLPM-QKESRSLNLSNTVSIIVYEAWRQLDF 150
>gi|398951446|ref|ZP_10674050.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM33]
gi|398156378|gb|EJM44797.1| putative rRNA methylase SpoU family [Pseudomonas sp. GM33]
Length = 151
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRLFAFTTKGSRPFHDASFVPGDAFLFGPESRGLPAEVLDALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|418529966|ref|ZP_13095893.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
ATCC 11996]
gi|371453022|gb|EHN66047.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
ATCC 11996]
Length = 164
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 11/161 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV+P+IP NTG + R A + C LHL+ PLGF ++D ++RAGLDY Y + H
Sbjct: 1 MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60
Query: 138 STWAEFRDYFRQ--QEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
++W D F Q Q +R+ A T +S + ++ GD+L+FGSE+ GLPPE
Sbjct: 61 ASW----DVFLQTCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQF 116
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+E +R+PM+ + R LNLS +V + V+EA RQ +
Sbjct: 117 PNEQ----RLRLPMLASQ-RSLNLSNAVAVTVFEAWRQQGF 152
>gi|450138161|ref|ZP_21872023.1| putative rRNA methylase [Streptococcus mutans NLML1]
gi|449234307|gb|EMC33324.1| putative rRNA methylase [Streptococcus mutans NLML1]
Length = 182
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFADKTYSDENYDDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
salivarius SK126]
gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
salivarius SK126]
Length = 169
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 5 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKG--DYLIFGSETSGLPPEALLDCTS 197
A+F + Q+G RL TK T+S+ +Y G Y +FG E +GLP + + +
Sbjct: 65 LADFMS--KNQDG--RLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLPEDFMREHPE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ + L+ +
Sbjct: 121 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFAGLELS 160
>gi|386085965|ref|YP_006001839.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
ND03]
gi|387909063|ref|YP_006339369.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
MN-ZLW-002]
gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
ND03]
gi|387573998|gb|AFJ82704.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
MN-ZLW-002]
Length = 169
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 97/165 (58%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 5 HIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDN 64
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
A+ F + RL TK T+SE Y G+ Y +FG E +GLP + + +
Sbjct: 65 LAD----FMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ +E L+ +
Sbjct: 121 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFEGLELS 160
>gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
oklahomensis EO147]
Length = 156
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FG+ET GL PE +
Sbjct: 61 RDWDAF--IAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPP 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|350544588|ref|ZP_08914174.1| tRNA (cytosine34-2'-O-)-methyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527658|emb|CCD37712.1| tRNA (cytosine34-2'-O-)-methyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
Length = 156
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 7/159 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y + VH+
Sbjct: 2 FNVVLVEPEIPPNTGNVIRLCANTGAWLHLIEPLGFPLDDAKMRRAGLDYHEYAEMNVHA 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F ++ + AFT RG++ + +++ GD+ +FG+ET GL PE L ++
Sbjct: 62 NWDAF--VAKESPDATLMFAFTTRGSTPFFDHAFKPGDWFVFGAETRGLAPELLDHFPAQ 119
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V I +EA RQ +E
Sbjct: 120 Q----RVRLPMRPDN-RSLNLSNTVAIVTFEAWRQAGFE 153
>gi|449999299|ref|ZP_21824439.1| putative rRNA methylase [Streptococcus mutans N29]
gi|449187035|gb|EMB88836.1| putative rRNA methylase [Streptococcus mutans N29]
Length = 182
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAAANTSLHIIRPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFADKTYSDENYSDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|399019218|ref|ZP_10721367.1| putative rRNA methylase SpoU family [Herbaspirillum sp. CF444]
gi|398098365|gb|EJL88652.1| putative rRNA methylase SpoU family [Herbaspirillum sp. CF444]
Length = 160
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYASMQVH 60
Query: 138 STWAEFRDYFRQQEGE---KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
W F + RQ + + R+ A T G++ + +++ GD +FG+ET GL PE
Sbjct: 61 PNWDAFIEK-RQSDPDFDAARMFALTTHGSTPFAGVAFHPGDVFVFGAETRGLAPE---- 115
Query: 195 CTSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E+F G IR+PM R LNLS +V + VYEA RQ
Sbjct: 116 -LRESFPTGQRIRLPMRPDN-RSLNLSNTVAVVVYEAWRQ 153
>gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
51100]
gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
51100]
Length = 183
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I S
Sbjct: 20 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDI---SF 76
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSE--ISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D+ +Q +G RL +K +SE S Y +FG E +GLP E +
Sbjct: 77 YESLDDFMKQMDG--RLYLISKFAEKVYSEENFSAEGPHYFMFGREDTGLPEEFMRQHPE 134
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LN+S +V + VYEA RQ N+ L + D+
Sbjct: 135 K-----ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEADK 181
>gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601]
gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601]
Length = 172
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 97/166 (58%), Gaps = 13/166 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I+RTCA + LHL+ PLGF DD LKRAGLDYW V + H +
Sbjct: 7 HIVLYQPEIPANTGNISRTCAGTDTFLHLIRPLGFSTDDKMLKRAGLDYWDNVKLVYHDS 66
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR---KGDYLIFGSETSGLPPEALLDCT 196
F + ++GE L TK G +S++SY+ K Y IFG ET+GLP E LL
Sbjct: 67 LEAFLE--ASKDGE--LYFITKFGRHVYSDVSYQDTNKDYYFIFGKETTGLPDE-LLQQH 121
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
ET +RIPM + +R LNLS + + +YE RQ N+ L+ A
Sbjct: 122 EET----CLRIPMTDK-IRSLNLSNTAALVIYEVLRQQNFGALEQA 162
>gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
16841]
gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
16841]
Length = 167
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 12/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC A+ LHL+ PLGF++D+ LKRAG+DYW + + +
Sbjct: 4 LNIVLYEPEIPANTGNIGRTCVATGTKLHLIEPLGFRLDEKALKRAGMDYWKDLDVTTYV 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W D+ + EK +A TK G +S++SY +++FG E++G+ PE +L +
Sbjct: 64 NWD---DFCEKNPNEKIYMATTK-GRHVYSDVSYEPDCFIMFGKESAGI-PEEILKANPD 118
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +RIPM+ ET R LNLS SV I +YEA RQ +++ +K
Sbjct: 119 T----CVRIPMIGET--RSLNLSNSVAIVLYEALRQNHFDHMK 155
>gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 175
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 16/173 (9%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+ L P +P NTG I+RTCAAS LHL+ PLGF DD LKRAGLDYW V I H +
Sbjct: 4 HIALYQPLMPANTGNISRTCAASNAPLHLIHPLGFSTDDKMLKRAGLDYWHNVEIIEHES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD----YLIFGSETSGLPPEALLDC 195
+ F DY G++ + +K ++E + + + +FG ET+GLP E +L+
Sbjct: 64 FEAFLDYV----GQRPMYLISKFAPRIYTEADLARNEADEQFFLFGKETTGLPLEFMLEH 119
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY---EQLKTASDT 245
+ +RIPM + +VR LNLS +V I ++EA RQ N+ +Q+ DT
Sbjct: 120 KQD-----CLRIPMNDEHVRSLNLSNTVNIVLFEALRQQNWANMDQIHHYRDT 167
>gi|450120731|ref|ZP_21865874.1| putative rRNA methylase [Streptococcus mutans ST6]
gi|449229926|gb|EMC29213.1| putative rRNA methylase [Streptococcus mutans ST6]
Length = 182
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIILPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parauberis NCFD 2020]
gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parauberis NCFD 2020]
Length = 181
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 12/177 (6%)
Query: 68 EAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLD 127
E ++ N VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLD
Sbjct: 6 EDIDYRENNSRNHVVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLD 65
Query: 128 YWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETS 185
YW + ++ + + D+ + +G+ L+ +K +S+ +Y G Y IFG E
Sbjct: 66 YWDKLDVRFYDS---LDDFLGKVDGQIHLI--SKFAEKVYSDHNYDDGQAHYFIFGREDK 120
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
GLP E + + + + +RIPM + +VR LNLS +V + VYEA +Q +++ L+ +
Sbjct: 121 GLPEEFMREHSEK-----ALRIPMNDEHVRSLNLSNTVCMIVYEALKQQSFQGLELS 172
>gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
M50/1]
gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
XB6B4]
Length = 167
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 12/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC A+ LHL+ PLGF +D+ +KRAG+DYW + + +
Sbjct: 4 LNIVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFHLDEKSIKRAGMDYWSELDVTTYV 63
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W D+ + G K +A TK G ++E+SY Y++FG E++G+ PE +L +
Sbjct: 64 NWD---DFCEKNPGAKIYMATTK-GRHVYTEVSYEPDCYIMFGKESAGI-PEEILKANPD 118
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +RIPM+ ET R LNLS SV I +YEA RQ ++ +K
Sbjct: 119 T----CVRIPMIGET--RSLNLSNSVAIVLYEALRQNQFDHMK 155
>gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
Length = 171
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 12/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC A+ LHL+ PLGF +D+ +KRAG+DYW + + +
Sbjct: 8 LNIVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFHLDEKSIKRAGMDYWSELDVTTYV 67
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W D+ + G K +A TK G ++E+SY Y++FG E++G+ PE +L +
Sbjct: 68 NWD---DFCEKNPGAKIYMATTK-GRHVYTEVSYEPDCYIMFGKESAGI-PEEILKANPD 122
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +RIPM+ ET R LNLS SV I +YEA RQ ++ +K
Sbjct: 123 T----CVRIPMIGET--RSLNLSNSVAIVLYEALRQNQFDHMK 159
>gi|290579940|ref|YP_003484332.1| rRNA methylase [Streptococcus mutans NN2025]
gi|449956338|ref|ZP_21809434.1| putative rRNA methylase [Streptococcus mutans 4VF1]
gi|449970259|ref|ZP_21813719.1| putative rRNA methylase [Streptococcus mutans 2VS1]
gi|450028985|ref|ZP_21832495.1| putative rRNA methylase [Streptococcus mutans G123]
gi|450035613|ref|ZP_21835080.1| putative rRNA methylase [Streptococcus mutans M21]
gi|450058775|ref|ZP_21843190.1| putative rRNA methylase [Streptococcus mutans NLML4]
gi|450062754|ref|ZP_21844531.1| putative rRNA methylase [Streptococcus mutans NLML5]
gi|450066659|ref|ZP_21846096.1| putative rRNA methylase [Streptococcus mutans NLML9]
gi|450092425|ref|ZP_21855991.1| putative rRNA methylase [Streptococcus mutans W6]
gi|450110045|ref|ZP_21861871.1| putative rRNA methylase [Streptococcus mutans SM6]
gi|450147614|ref|ZP_21875164.1| putative rRNA methylase [Streptococcus mutans 14D]
gi|450165276|ref|ZP_21881781.1| putative rRNA methylase [Streptococcus mutans B]
gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025]
gi|449170620|gb|EMB73316.1| putative rRNA methylase [Streptococcus mutans 4VF1]
gi|449173532|gb|EMB76098.1| putative rRNA methylase [Streptococcus mutans 2VS1]
gi|449194949|gb|EMB96287.1| putative rRNA methylase [Streptococcus mutans G123]
gi|449195220|gb|EMB96551.1| putative rRNA methylase [Streptococcus mutans M21]
gi|449203746|gb|EMC04595.1| putative rRNA methylase [Streptococcus mutans NLML4]
gi|449205486|gb|EMC06233.1| putative rRNA methylase [Streptococcus mutans NLML5]
gi|449208684|gb|EMC09261.1| putative rRNA methylase [Streptococcus mutans NLML9]
gi|449218352|gb|EMC18366.1| putative rRNA methylase [Streptococcus mutans W6]
gi|449225586|gb|EMC25177.1| putative rRNA methylase [Streptococcus mutans SM6]
gi|449236688|gb|EMC35594.1| putative rRNA methylase [Streptococcus mutans 14D]
gi|449240805|gb|EMC39462.1| putative rRNA methylase [Streptococcus mutans B]
Length = 182
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 17/182 (9%)
Query: 75 QNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYW 129
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW
Sbjct: 9 ENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYW 68
Query: 130 PYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGL 187
+ + + + +F + +L TK T+S+ +Y + Y +FG E GL
Sbjct: 69 DKLDVHFYDSLNDFMNI-----CSGKLHLITKFADKTYSDENYDDSEHHYFLFGREDKGL 123
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCI 247
P E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ + +
Sbjct: 124 PEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYAV 178
Query: 248 DR 249
D+
Sbjct: 179 DK 180
>gi|339324508|ref|YP_004684201.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Cupriavidus
necator N-1]
gi|338164665|gb|AEI75720.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Cupriavidus
necator N-1]
Length = 156
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHLV PLGF ++D +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W +Q R+ A T RG++ ++++R GD+ +FG ET GL PE
Sbjct: 61 ESWDAL--MASEQPDPARMFALTTRGSTPFGQVAFRPGDWFVFGPETRGLSPE-----RR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ F IR+PM R LNLS +V + V+EA RQ +E
Sbjct: 114 DWFPPAQRIRLPMRPDN-RSLNLSNTVAVVVFEAWRQNGFE 153
>gi|449886313|ref|ZP_21786137.1| putative rRNA methylase [Streptococcus mutans SA41]
gi|449254492|gb|EMC52400.1| putative rRNA methylase [Streptococcus mutans SA41]
Length = 182
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + + + +
Sbjct: 19 HVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDS 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
+F + +L TK T+S+ +Y + Y +FG E GLP E + +
Sbjct: 79 LNDFMNI-----CSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSE 133
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LNLS +V + VYEA RQ ++ L+ + +D+
Sbjct: 134 K-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYAVDK 180
>gi|383760039|ref|YP_005439025.1| TrmH family RNA methyltransferase [Rubrivivax gelatinosus IL144]
gi|381380709|dbj|BAL97526.1| RNA methyltransferase, TrmH family, group 2 [Rubrivivax gelatinosus
IL144]
Length = 156
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLG+ +DD +L+RAGLDY Y ++ H
Sbjct: 1 MFDIVLVHPEIPPNTGNVIRLAANTGCRLHLVEPLGYSMDDKQLRRAGLDYHEYAPVRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W + R R+ AFT RG+ +E ++ GD+L+FG+E++GLP E L
Sbjct: 61 ASWDALLESERPDPA--RMFAFTTRGSHPLAEQRWQAGDWLVFGAESAGLPAELLARFPD 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V +AV++A RQ Y+
Sbjct: 119 SQ----RVRLPM-RAGQRSLNLSNAVAVAVFDAWRQNGYD 153
>gi|398878607|ref|ZP_10633721.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM67]
gi|398199251|gb|EJM86195.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM67]
Length = 151
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G R+ AFT +G+ + S+ +GD +FG E+ GLP E L
Sbjct: 61 ADLASCLESL----GHPRVFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM E R LNLS +V +AVYEA RQ +++
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQNDFK 151
>gi|339641120|ref|ZP_08662564.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339454389|gb|EGP67004.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 169
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 96/172 (55%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 6 HIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYEN 65
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
EF Q +G RL +K +SE + K + Y +FG E GLP E + +
Sbjct: 66 LEEF---MEQMDG--RLYLVSKFAEKVYSEADFSKHENHYFMFGREDKGLPEEFMRQHSE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LN+S +V + VYEA RQ + L + D+
Sbjct: 121 K-----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQQFAGLDLVHEYQNDK 167
>gi|410638315|ref|ZP_11348879.1| hypothetical protein GLIP_3470 [Glaciecola lipolytica E3]
gi|410142235|dbj|GAC16084.1| hypothetical protein GLIP_3470 [Glaciecola lipolytica E3]
Length = 154
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD K++RAGLDY + +K H
Sbjct: 1 MLSIVLYQPEIPPNTGNIIRLCANTGYDLHLIEPLGFDWDDKKVRRAGLDYHEFAQVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + Q E +R+ A T +GT +E ++ GD L+FG ET GLP + + +
Sbjct: 61 ANLAA----YLQSEQPQRMFACTTKGTKNFAEADFKAGDALLFGPETRGLPDDVIQSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ +RIPM+ R +NLS +V + VYE+ RQL++E
Sbjct: 117 DQ----RLRIPMLAK-SRSMNLSNAVAVFVYESWRQLDFE 151
>gi|333905606|ref|YP_004479477.1| SpoU rRNA methylase family protein [Streptococcus parauberis KCTC
11537]
gi|333120871|gb|AEF25805.1| SpoU rRNA methylase family protein [Streptococcus parauberis KCTC
11537]
gi|457096089|gb|EMG26560.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus parauberis
KRS-02083]
Length = 181
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 12/177 (6%)
Query: 68 EAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLD 127
E ++ N VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLD
Sbjct: 6 EDIDYRENNSRNHVVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLD 65
Query: 128 YWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETS 185
YW + ++ + + D+ + +G+ L+ +K +S+ +Y G Y IFG E
Sbjct: 66 YWDKLDVRFYDS---LDDFLGKVDGQIHLI--SKFAEKVYSDHNYDDGQAHYFIFGREDK 120
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
GLP E + + +RIPM + +VR LNLS +V + VYEA +Q +++ L+ +
Sbjct: 121 GLPEEFM-----REYSEKALRIPMNDEHVRSLNLSNTVCMIVYEALKQQSFQGLELS 172
>gi|419780564|ref|ZP_14306411.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
oralis SK100]
gi|383185162|gb|EIC77661.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
oralis SK100]
Length = 167
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + +++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKVYSEADLSTDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM + +VR LN+S +V + VYEA RQ N+ L+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFADLE 156
>gi|398343441|ref|ZP_10528144.1| rRNA methylase [Leptospira inadai serovar Lyme str. 10]
Length = 153
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 92/156 (58%), Gaps = 8/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L++ L P+IP NTG IAR C A LH+VG F++ + +RAGLDYW V + +HS
Sbjct: 3 LRIALYRPEIPPNTGNIARLCVALGAELHIVGEPAFELSEKAARRAGLDYWDKVKLTLHS 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
TW EFR F + L + +G +++++ +Y D L+FG+ETSGLPPE +
Sbjct: 63 TWEEFRADFPPRSD---LYLISTKGVTSYTKPNYGPDDTLLFGNETSGLPPEIMKSADV- 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
G IRIPM E RCLNLS +V I YE RQ+
Sbjct: 119 ---GHVIRIPMEED-CRCLNLSNAVAIVAYEVLRQV 150
>gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. AS9601]
gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. AS9601]
Length = 160
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 14/166 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
++V L P+IP NTG IAR+CAA L+L+ PLGF+++D LKRAGLDYWP V + +
Sbjct: 1 MEVALFEPRIPQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNQYE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ + F + KR+++F+K+ + +++ D L+FG E SGL P++++D +
Sbjct: 61 NFEK----FLASKSTKRIISFSKKNGLYLKDFKFKQDDILLFGREDSGL-PDSIIDKSDF 115
Query: 199 TFGGGTIRIPMVET------YVRCLNLSVSVGIAVYEAARQLNYEQ 238
+I +P ++T VR LNLSV+ GIA+YEA +Q+N++
Sbjct: 116 LI---SIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAYKQINFQN 158
>gi|392308076|ref|ZP_10270610.1| tRNA/rRNA methyltransferase [Pseudoalteromonas citrea NCIMB 1889]
Length = 154
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF+ DD ++KRAGLDY + ++ H
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVKRAGLDYHEFSDVQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+++AE + +++ KR+ A T +GT H + Y+ GD L+FG ET GLP + +
Sbjct: 61 ASFAE----YVEKQQPKRVFACTTKGTKYHHQPEYQPGDCLLFGPETRGLPDDIIYSLPE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM R +NLS +V + VYE+ RQL++ K
Sbjct: 117 EQ----RLRIPMRPD-SRSMNLSNAVAVFVYESWRQLDFANAK 154
>gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase SpoU [Clostridium saccharolyticum WM1]
gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
WM1]
Length = 164
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 16/164 (9%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P++P NTG I RTC A+ LHL+ PLGF+++D +KRAGLDYW + + V+S
Sbjct: 1 MNIVLLEPEMPANTGNIGRTCVATGTKLHLIEPLGFKLNDKLIKRAGLDYWDKLDVNVYS 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL---DC 195
+++D+ + G + +A TK G +S++ Y +L+FG E++G+P E LL DC
Sbjct: 61 ---DYQDFLDRNPGARIYMATTK-GLHVYSDVEYDPDCFLMFGKESAGIPEEILLENQDC 116
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM +R LNLS SV I +YEA RQ +E++
Sbjct: 117 --------CVRIPMWGD-IRSLNLSNSVSIVLYEALRQNGFERM 151
>gi|456370338|gb|EMF49234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus parauberis
KRS-02109]
Length = 181
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 12/177 (6%)
Query: 68 EAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLD 127
E ++ N VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLD
Sbjct: 6 EDIDYRENNSRNHVVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLD 65
Query: 128 YWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETS 185
YW + ++ + + D+ + +G+ L+ +K +S+ +Y G Y IFG E
Sbjct: 66 YWDKLDVRFYES---LDDFLGKVDGQIHLI--SKFAEKVYSDHNYDDGQAHYFIFGREDK 120
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
GLP E + + + + +RIPM + +VR LNLS +V + VYEA +Q +++ L+ +
Sbjct: 121 GLPEEFMREYSEK-----ALRIPMNDEHVRSLNLSNTVCMIVYEALKQQSFQGLELS 172
>gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
Length = 161
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG I R A + C LHL+ PLGF +DD ++RAGLDY Y +K H
Sbjct: 1 MFHIVLVEPEIPPNTGNIIRLSANTGCALHLIEPLGFSMDDKHMRRAGLDYHEYATVKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W F +Q +R+ A T R + E + GD+L+FGSET GL D
Sbjct: 61 ASWQAF--LAGEQPAPERMFALTTRAGRSVYEAQFAPGDWLVFGSETKGLS-----DAVR 113
Query: 198 ETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
++F ++++PM+E R LNLS +V + V+EA RQ
Sbjct: 114 QSFTLAQSLKLPMIEGQ-RSLNLSNAVAVTVFEAWRQ 149
>gi|406899589|gb|EKD42818.1| hypothetical protein ACD_73C00006G0002 [uncultured bacterium]
Length = 153
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VLV+PQIP NTG IAR CAA LHL+ PLGF V+D LKRAGLDYWP+V ++ H
Sbjct: 1 MLNIVLVNPQIPPNTGNIARLCAAMRLKLHLIHPLGFSVEDRYLKRAGLDYWPHVDLEHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ D ++ E R T + T ++ + ++KGD+L+FG+ET+GL + L
Sbjct: 61 NS----VDDLWEKNKEGRFYYLTTKATQPYTSVKFQKGDFLVFGAETTGLNKDILEPNWD 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
TI +P VR LNLS +V + EA RQ+
Sbjct: 117 RAL---TIVMP---GQVRSLNLSSAVAMVAGEAMRQI 147
>gi|73540016|ref|YP_294536.1| RNA methyl transferase TrmH [Ralstonia eutropha JMP134]
gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
Length = 156
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHLV PLGF ++D +++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+W +Q R+ A T G++ ++S++ GD+ +FGSET GL PE
Sbjct: 61 DSWDAL--MASEQPDPSRMFALTTHGSTPFGQVSFQPGDWFVFGSETRGLAPE-----RR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E+F IR+PM R LNLS +V + V+EA RQ
Sbjct: 114 ESFPPSQRIRLPMRPNN-RSLNLSNTVAVVVFEAWRQ 149
>gi|448236766|ref|YP_007400824.1| RNA methyltransferase [Geobacillus sp. GHH01]
gi|445205608|gb|AGE21073.1| RNA methyltransferase [Geobacillus sp. GHH01]
Length = 157
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYWPYV I +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLA-FTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ E + R EGE + F +R + K + +FG ET+GLP E L
Sbjct: 63 SLDEL--FARFPEGEFYFITKFGRRYYDSFDFSDTEKHIFFVFGRETTGLPKELL----- 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +RIPM + VR LNLS + I VYEA RQ
Sbjct: 116 EANMDRCLRIPMNDK-VRSLNLSNTAAILVYEALRQ 150
>gi|363891404|ref|ZP_09318583.1| RNA methyltransferase, TrmH family, group 2 [Eubacteriaceae
bacterium CM2]
gi|402837685|ref|ZP_10886202.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Eubacteriaceae
bacterium OBRC8]
gi|361965461|gb|EHL18443.1| RNA methyltransferase, TrmH family, group 2 [Eubacteriaceae
bacterium CM2]
gi|402274705|gb|EJU23882.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Eubacteriaceae
bacterium OBRC8]
Length = 156
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC + LH++ P GF + + +KR+G+DY Y I+ +
Sbjct: 3 LNIVLFEPEIPANTGNIIRTCVCTNTVLHMIRPFGFSMSEKMIKRSGMDYIQYADIRYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F +Y+ + + EK + FT + HS++ Y+ GD+LIFG E+ GL PE + +
Sbjct: 63 S---FEEYYEKYDKEK-MYFFTTKARHKHSDVVYKDGDHLIFGPESRGL-PEKIRSINEQ 117
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM+ +VR LNLS SV I ++EA RQ++Y++
Sbjct: 118 ----NNVRIPMLFNEHVRSLNLSNSVAIGLFEALRQIDYKEF 155
>gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
benzoatilyticus JA2]
gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
benzoatilyticus JA2]
Length = 156
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 7/159 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLG+ +DD +L+RAGLDY Y ++ H
Sbjct: 1 MFDIVLVHPEIPPNTGNVIRLAANTGCRLHLVEPLGYSMDDKQLRRAGLDYHEYAPVRRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W + R R+ AFT RG+ +E ++ GD+L+FG+E++GLP E L
Sbjct: 61 ASWDALLESERPDPA--RMFAFTTRGSHPLAEQRWQAGDWLVFGAESAGLPAELLARFPD 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM R LNLS +V +AV++A RQ Y
Sbjct: 119 SQ----RVRLPM-RAGQRSLNLSNAVAVAVFDAWRQAGY 152
>gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea blandensis MED297]
gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
Length = 154
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + C LHL+ PLGF +D+ L+RAGLDY + I++
Sbjct: 1 MFHIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSMDEKALRRAGLDYHEFAQIRI- 59
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W ++ F QQ RL A + +G+ +SE++++ GDYL+FG ET GLP +
Sbjct: 60 --WPDY-PTFLQQAQPPRLFALSTKGSQGYSEVAFQPGDYLMFGPETRGLPADIRESLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM+ R LNLS +V + VYEA RQ
Sbjct: 117 EQ----VLRLPMLAD-SRSLNLSNTVAVMVYEAWRQ 147
>gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 166
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I RTC A+ LHL+ PLGF + + LKRAG+DYW + + +
Sbjct: 4 LNIVLHEPEIPANTGNIGRTCVATGTRLHLIEPLGFSLSEKALKRAGMDYWKDLDV---T 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ +F D+ + G K A TK T++++ Y + Y++FG E++G+P + L++ E
Sbjct: 61 TYLDFEDFLEKNPGAKIYYATTK-APQTYTDVHYEEDCYIMFGKESAGIPEDILVN-NQE 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
T +RIPM+ +R LNLS SV I +YEA RQ N++ +
Sbjct: 119 T----CVRIPMIGD-IRSLNLSNSVAIVLYEALRQNNFDHMN 155
>gi|421276888|ref|ZP_15727708.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
mitis SPAR10]
gi|395876169|gb|EJG87245.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
mitis SPAR10]
Length = 167
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
EF ++ +G+ L++ + ++ + + Y +FG E GLP E + + +
Sbjct: 64 LDEF---MKKMDGQVYLISKFAEKVYSDADFTIKGNHYFLFGREDKGLPEEFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYETDK 165
>gi|239826057|ref|YP_002948681.1| TrmH family RNA methyltransferase [Geobacillus sp. WCH70]
gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
Length = 157
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYWPYV I +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLA-FTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ E + R GE + F K+ + K + +FG ET+GLP + L
Sbjct: 63 SLEEL--FERYPNGEFYFITKFGKKYYDSFDFSDMEKDHFFVFGRETTGLPKDLL----- 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM + VR LNLS + I VYEA RQ + L
Sbjct: 116 EANMDRCLRIPMNDK-VRSLNLSNTAAILVYEALRQQKFNGL 156
>gi|358465572|ref|ZP_09175508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357065381|gb|EHI75592.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 167
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A D+ Q +G+ L++ + ++++ + Y +FG E GLP + + + +
Sbjct: 64 LA---DFMSQMKGQVYLISKFAEKVYSEADLASDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM + +VR LN+S +V + VYEA RQ N+ L+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLE 156
>gi|339489777|ref|YP_004704305.1| RNA methyltransferase [Pseudomonas putida S16]
gi|431804876|ref|YP_007231779.1| RNA methyltransferase [Pseudomonas putida HB3267]
gi|338840620|gb|AEJ15425.1| RNA methyltransferase [Pseudomonas putida S16]
gi|430795641|gb|AGA75836.1| RNA methyltransferase [Pseudomonas putida HB3267]
Length = 153
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+ F++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCDLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ E++Y+ GD +FG E+ GLP E L +
Sbjct: 61 ESLAGCLESL----GNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM R LNLS +V + VYEA RQ
Sbjct: 117 EQ----RLRLPM-RPGCRSLNLSNTVAVTVYEAWRQ 147
>gi|350565727|ref|ZP_08934468.1| TrmH family RNA methyltransferase [Peptoniphilus indolicus ATCC
29427]
gi|348663499|gb|EGY80071.1| TrmH family RNA methyltransferase [Peptoniphilus indolicus ATCC
29427]
Length = 154
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG IARTCA + LHL+ PL F + D +KRAGLDYWP V I V+
Sbjct: 1 MLNIVLYEPEIPHNTGAIARTCALTNTRLHLIEPLAFDISDKMVKRAGLDYWPLVDITVY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ E F ++ + T + ++++ Y+ D+++FG ET G+P + L +
Sbjct: 61 KNYDE----FLEKNPSATVYYGTTKTEQLYTDVEYKDEDFIMFGPETRGIPEDILFNDLE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
++IPM+ + R LNL+ S I YEA RQL + LK
Sbjct: 117 H-----CVKIPMITSIKRSLNLANSANIVAYEALRQLGFPGLK 154
>gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont]
Length = 142
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 21/159 (13%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD + GLDY Y +K H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKR----GLDYHEYTALKKH 56
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+++A F E +RL A T +GT HS +SY+ GDYL+FG E+ GLPPE L +
Sbjct: 57 ASYAAFL----AAEAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPESRGLPPEILNALPA 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R +NLS +V + VYEA RQL++
Sbjct: 113 -------------EQKIRSMNLSNAVSVVVYEAWRQLDF 138
>gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162]
Length = 166
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL+ P+IP NTG I RTC A+ LHL+ PLGF + + LKRAG+DYW + + S
Sbjct: 4 LNIVLLEPEIPANTGNIGRTCVATGTKLHLIEPLGFSLSEKALKRAGMDYWKDLDV---S 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
T+ ++ D+ + K A TK T++++ Y Y++FG E++G+P E L++
Sbjct: 61 TYLDYEDFVEKNPNAKIYYATTK-ALKTYTDVQYEDDCYIMFGKESAGIPEEILMEHKE- 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM+ +R LNLS SV I +YEA RQ ++ ++
Sbjct: 119 ----NCVRIPMIND-IRSLNLSNSVAIVLYEALRQNQFDHMQ 155
>gi|417922537|ref|ZP_12566025.1| putative RNA methyltransferase, TrmH family, group 2 [Streptococcus
cristatus ATCC 51100]
gi|342832634|gb|EGU66929.1| putative RNA methyltransferase, TrmH family, group 2 [Streptococcus
cristatus ATCC 51100]
Length = 169
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I S
Sbjct: 6 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDI---SF 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSE--ISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D+ +Q +G RL +K +SE S Y +FG E +GLP E +
Sbjct: 63 YESLDDFMKQMDG--RLYLISKFAEKVYSEENFSAEGPHYFMFGREDTGLPEEFMRQHPE 120
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LN+S +V + VYEA RQ N+ L + D+
Sbjct: 121 K-----ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEADK 167
>gi|425054841|ref|ZP_18458343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
505]
gi|403035150|gb|EJY46555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
505]
Length = 187
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 23 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 82
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
F + G+++L +K +SE ++ G+ + +FG ET+GL PE +
Sbjct: 83 LEAFLAFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PETFMRENE 137
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 138 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 176
>gi|375007397|ref|YP_004981030.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359286246|gb|AEV17930.1| putative tRNA/rRNA methyltransferase in gldA 3'region [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 160
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYWPYV I +
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATDTSLHLIRPLGFSTDDKMLKRAGLDYWPYVNISYYD 65
Query: 139 TWAEFRDYFRQQEGEKRLLA-FTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ E + R EGE + F +R + K + +FG ET+GLP E L
Sbjct: 66 SLDEL--FARFPEGEFYFITKFGRRYYDSFDFSDTEKHIFFVFGRETTGLPKELL----- 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +RIPM + VR LNLS + I VYEA RQ
Sbjct: 119 EANMDRCLRIPMNDK-VRSLNLSNTAAILVYEALRQ 153
>gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
Length = 154
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 9/153 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+VL P+IP NTG I R CA + LHLV PLGF +D +K+KRAGLDY + + VH
Sbjct: 4 IVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHEN- 62
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
F D + EG +R+ A T +G++ E+S+R+GD L+FG ET GLP E +LD
Sbjct: 63 --FEDCLKALEG-RRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAE-ILDSLP--- 115
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G IR+PM+ R +NLS +V + ++EA RQ
Sbjct: 116 AGQKIRLPMMPGS-RSMNLSNTVAVILFEAWRQ 147
>gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
49296]
gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
49296]
Length = 167
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 8/161 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A D+ Q +G+ L++ + ++S + Y +FG E GL PE + ET
Sbjct: 64 LA---DFMSQMKGQVYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGL-PEDFMREHPET 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM + +VR LN+S +V + VYEA RQ N+ L+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLE 156
>gi|427402642|ref|ZP_18893639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Massilia
timonae CCUG 45783]
gi|425718448|gb|EKU81395.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Massilia
timonae CCUG 45783]
Length = 156
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 9/161 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNVIRLCANAGAQLHLIEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + + + R+ A T G+S +E ++ GD +FG E+ GL P
Sbjct: 61 KDWDAFLETVKPDQA--RMFALTTHGSSPFAEAHFQPGDVFVFGPESRGLAP-----AFR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
ETF IR+PM R LNLS +V I VYEA RQ Y+
Sbjct: 114 ETFPPEQRIRLPMRPDN-RSLNLSNTVAIVVYEAWRQNGYQ 153
>gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
14237]
gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
14237]
Length = 151
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L +VL P+IP NTG I R AS LHLV P GF++ D ++KRAGLDYW ++ + ++
Sbjct: 3 LHIVLFEPEIPNNTGNIGRLSLASGSHLHLVKPFGFELSDKRVKRAGLDYWQHISLTIYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ +F Y + +K + F+ G TH +I ++ +LIFG E+ GLP E ++
Sbjct: 63 SIEDF--YLKN--SDKEFVYFSSHGDKTHWDIDFKDNLFLIFGKESKGLPEEITAQNSNS 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ +IP+ +VR LNL+ +V I VYE RQL
Sbjct: 119 LY-----KIPLHSDHVRSLNLANAVSIVVYEGLRQL 149
>gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 176
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IP NTG IAR+C A+ LHL+ PLGF++ + +KRA +DYW + V+S
Sbjct: 1 MNIVLLEPEIPANTGNIARSCVATNTRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYS 60
Query: 139 TWAEFRDYFRQQEGEKRLLAF-TKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ D++ + + + F T + T+ E+S+ DY++FG E++G+P E L +
Sbjct: 61 ---DINDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDYIMFGKESAGIPEEILSENED 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
G IRIPM +R LNLS SV I +YEA Q +E++K D
Sbjct: 118 -----GCIRIPMWGD-IRSLNLSNSVAIILYEALAQNGFEKMKLTGD 158
>gi|398845585|ref|ZP_10602614.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM84]
gi|398253444|gb|EJN38572.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM84]
Length = 153
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+ F++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCDLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ E++Y+ GD +FG E+ GLP E L +
Sbjct: 61 ESLAGCLESL----GNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM R LNLS +V + VYEA RQ +
Sbjct: 117 EQ----RLRLPM-RPGCRSLNLSNTVAVTVYEAWRQQGF 150
>gi|260892338|ref|YP_003238435.1| TrmH family RNA methyltransferase [Ammonifex degensii KC4]
gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
KC4]
Length = 152
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 95/163 (58%), Gaps = 12/163 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VLV P+IP NTG IARTCAA+ LHLV PLGF DD L+RAGLDYW V I H
Sbjct: 1 MHIVLVEPEIPANTGNIARTCAATGATLHLVRPLGFYTDDRHLRRAGLDYWHLVKIYYHD 60
Query: 139 TWAEF-RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++A+ R Y + T R ++++ Y G +L+FG E++GLP E L
Sbjct: 61 SFADLCRAY-----PDACFFLTTTRAERWYTQVRYPPGSFLVFGKESTGLPEEIL----- 110
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ F IRIPMV R LNL+ +V I +YEA RQ + ++
Sbjct: 111 QAFPDRWIRIPMVPG-ARSLNLANAVAIVLYEALRQQGFPGMR 152
>gi|53718088|ref|YP_107074.1| SpoU rRNA methylase [Burkholderia pseudomallei K96243]
gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 91]
gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei NCTC 13177]
gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1655]
gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei S13]
gi|386863090|ref|YP_006276039.1| RNA methyltransferase [Burkholderia pseudomallei 1026b]
gi|418537758|ref|ZP_13103393.1| RNA methyltransferase [Burkholderia pseudomallei 1026a]
gi|418542077|ref|ZP_13107533.1| RNA methyltransferase [Burkholderia pseudomallei 1258a]
gi|418548403|ref|ZP_13113517.1| RNA methyltransferase [Burkholderia pseudomallei 1258b]
gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
K96243]
gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei S13]
gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1655]
gi|385349674|gb|EIF56241.1| RNA methyltransferase [Burkholderia pseudomallei 1026a]
gi|385356384|gb|EIF62493.1| RNA methyltransferase [Burkholderia pseudomallei 1258a]
gi|385358056|gb|EIF64084.1| RNA methyltransferase [Burkholderia pseudomallei 1258b]
gi|385660218|gb|AFI67641.1| RNA methyltransferase [Burkholderia pseudomallei 1026b]
Length = 156
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + S+ GD+ +FG+ET GL P AL+D +
Sbjct: 61 RDWDAF--VAAEAPDPARMFAFTTRGSGRFHDRSFEPGDWFVFGAETRGLAP-ALVDRFA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V + V+EA RQ +E
Sbjct: 118 PE---QRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
bacterium IMCC9480]
gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
bacterium IMCC9480]
Length = 156
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W+ F Q +R+ A T G++ + +R GD +FGSET GL P
Sbjct: 61 PDWSRF--IATVQPDPQRMFALTTHGSTPFATGQFRPGDVFVFGSETKGLDP-----ALR 113
Query: 198 ETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E+F IR+PM R LNLS +V + VYEA RQ Y
Sbjct: 114 ESFPPSQRIRLPMRPDN-RSLNLSNTVAVVVYEAWRQNGY 152
>gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
Length = 167
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAENVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
>gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
Length = 165
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC AS LHL+GPLGF++++ LKRAG+DYW + +
Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVASNTRLHLIGPLGFKLNEKALKRAGMDYWSDLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+T+ +F D+ + G K +A TK ++E+ Y +++FG E++G+P E L++
Sbjct: 58 TTYIDFNDFMEKNPGAKIYMATTK-APKVYTEVHYEPDCFIMFGKESAGIPEEILVEHKE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPMV +R LNL SV I +YEA RQ + ++
Sbjct: 117 -----NCVRIPMVGD-IRSLNLGNSVAIVLYEALRQNGFSEM 152
>gi|450176467|ref|ZP_21885814.1| putative rRNA methylase [Streptococcus mutans SM1]
gi|449245131|gb|EMC43478.1| putative rRNA methylase [Streptococcus mutans SM1]
Length = 182
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + + + +
Sbjct: 19 HVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDS 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
+F + +L TK T+S+ +Y + Y +FG E GLP E + +
Sbjct: 79 LNDFMNI-----CSGKLHLITKFADKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSE 133
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LNLS +V + VYEA RQ ++ L+ + +D+
Sbjct: 134 K-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYAVDK 180
>gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|261418815|ref|YP_003252497.1| TrmH family RNA methyltransferase [Geobacillus sp. Y412MC61]
gi|297531223|ref|YP_003672498.1| TrmH family RNA methyltransferase [Geobacillus sp. C56-T3]
gi|319765631|ref|YP_004131132.1| TrmH family RNA methyltransferase [Geobacillus sp. Y412MC52]
gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y412MC61]
gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
C56-T3]
gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
Y412MC52]
Length = 157
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYWPYV I +
Sbjct: 3 LHVVLYQPEIPANTGNIARTCAATDTSLHLIRPLGFSTDDKMLKRAGLDYWPYVNISYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLA-FTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ E + R EGE + F +R + K + +FG ET+GLP E L
Sbjct: 63 SLDEL--FARFPEGEFYFITKFGRRYYDSFDFSDTEKHIFFVFGRETTGLPKELL----- 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +RIPM + VR LNLS + I VYEA RQ
Sbjct: 116 EANMDRCLRIPMNDK-VRSLNLSNTAAILVYEALRQ 150
>gi|387785610|ref|YP_006250706.1| putative rRNA methylase [Streptococcus mutans LJ23]
gi|397650301|ref|YP_006490828.1| rRNA methylase [Streptococcus mutans GS-5]
gi|449875011|ref|ZP_21781974.1| putative rRNA methylase [Streptococcus mutans S1B]
gi|449881225|ref|ZP_21784325.1| putative rRNA methylase [Streptococcus mutans SA38]
gi|449893449|ref|ZP_21788741.1| putative rRNA methylase [Streptococcus mutans SF12]
gi|449896406|ref|ZP_21789679.1| putative rRNA methylase [Streptococcus mutans R221]
gi|449914677|ref|ZP_21795745.1| putative rRNA methylase [Streptococcus mutans 15JP3]
gi|449921101|ref|ZP_21798830.1| putative rRNA methylase [Streptococcus mutans 1SM1]
gi|449935212|ref|ZP_21803242.1| putative rRNA methylase [Streptococcus mutans 2ST1]
gi|449941771|ref|ZP_21805639.1| putative rRNA methylase [Streptococcus mutans 11A1]
gi|449995728|ref|ZP_21823151.1| putative rRNA methylase [Streptococcus mutans A9]
gi|450007213|ref|ZP_21827648.1| putative rRNA methylase [Streptococcus mutans NMT4863]
gi|450012697|ref|ZP_21829739.1| putative rRNA methylase [Streptococcus mutans A19]
gi|450024234|ref|ZP_21831115.1| putative rRNA methylase [Streptococcus mutans U138]
gi|450039113|ref|ZP_21836082.1| putative rRNA methylase [Streptococcus mutans T4]
gi|450046887|ref|ZP_21839187.1| putative rRNA methylase [Streptococcus mutans N34]
gi|450076922|ref|ZP_21850096.1| putative rRNA methylase [Streptococcus mutans N3209]
gi|450155158|ref|ZP_21878106.1| putative rRNA methylase [Streptococcus mutans 21]
gi|450160058|ref|ZP_21879785.1| putative rRNA methylase [Streptococcus mutans 66-2A]
gi|450180874|ref|ZP_21887483.1| putative rRNA methylase [Streptococcus mutans 24]
gi|379132011|dbj|BAL68763.1| putative rRNA methylase [Streptococcus mutans LJ23]
gi|392603870|gb|AFM82034.1| putative rRNA methylase [Streptococcus mutans GS-5]
gi|449151785|gb|EMB55509.1| putative rRNA methylase [Streptococcus mutans 11A1]
gi|449157655|gb|EMB61092.1| putative rRNA methylase [Streptococcus mutans 1SM1]
gi|449157780|gb|EMB61215.1| putative rRNA methylase [Streptococcus mutans 15JP3]
gi|449166851|gb|EMB69771.1| putative rRNA methylase [Streptococcus mutans 2ST1]
gi|449184224|gb|EMB86179.1| putative rRNA methylase [Streptococcus mutans A9]
gi|449186668|gb|EMB88488.1| putative rRNA methylase [Streptococcus mutans NMT4863]
gi|449188137|gb|EMB89867.1| putative rRNA methylase [Streptococcus mutans A19]
gi|449192212|gb|EMB93642.1| putative rRNA methylase [Streptococcus mutans U138]
gi|449198243|gb|EMB99367.1| putative rRNA methylase [Streptococcus mutans N34]
gi|449200769|gb|EMC01790.1| putative rRNA methylase [Streptococcus mutans T4]
gi|449211932|gb|EMC12318.1| putative rRNA methylase [Streptococcus mutans N3209]
gi|449237398|gb|EMC36251.1| putative rRNA methylase [Streptococcus mutans 21]
gi|449240554|gb|EMC39225.1| putative rRNA methylase [Streptococcus mutans 66-2A]
gi|449247722|gb|EMC45993.1| putative rRNA methylase [Streptococcus mutans 24]
gi|449251650|gb|EMC49656.1| putative rRNA methylase [Streptococcus mutans SA38]
gi|449254389|gb|EMC52298.1| putative rRNA methylase [Streptococcus mutans S1B]
gi|449255880|gb|EMC53720.1| putative rRNA methylase [Streptococcus mutans SF12]
gi|449262341|gb|EMC59794.1| putative rRNA methylase [Streptococcus mutans R221]
Length = 182
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + + + +
Sbjct: 19 HVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDS 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
+F + +L TK T+S+ +Y + Y +FG E GLP E + +
Sbjct: 79 LNDFMNI-----CSGKLHLITKFADKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSE 133
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LNLS +V + VYEA RQ ++ L+ + +D+
Sbjct: 134 K-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYAVDK 180
>gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 154
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 91/162 (56%), Gaps = 10/162 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCA + LHL+ PLGF +D+ LKRAGLDYW + + V+
Sbjct: 1 MNVVLYQPEIPQNTGNIARTCALTNTKLHLIKPLGFSLDEKHLKRAGLDYWDLLDLAVYD 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ +F D + + + T + +S+I Y YL+FG ET+GLP E
Sbjct: 61 DFEDFLD----KNPDPEIYVLTTHAKAFYSDIEYTGDAYLLFGRETAGLPDE-----IHS 111
Query: 199 TFGGGTIRIPMV-ETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ RIPM R LNLS SV I +YEA RQL + +L
Sbjct: 112 AYPDHRFRIPMRNHERARSLNLSNSVNIVLYEALRQLGFPEL 153
>gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668]
gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei MSHR346]
gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 668]
gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei MSHR346]
Length = 179
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 11/166 (6%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
S VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y
Sbjct: 20 SNRIMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQ 79
Query: 134 IKVHSTWAEFRDYFRQQEGEK--RLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEA 191
++VH W D F E R+ AFT RG+ + ++ GD+ +FG+ET GL P A
Sbjct: 80 MRVHRDW----DAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAP-A 134
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
L+D + +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 135 LVDRFAPE---QRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 176
>gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 305]
gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1106b]
gi|403517155|ref|YP_006651288.1| RNA methyltransferase [Burkholderia pseudomallei BPC006]
gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1106a]
gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 305]
gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
pseudomallei 1106b]
gi|403072799|gb|AFR14379.1| RNA methyltransferase [Burkholderia pseudomallei BPC006]
Length = 179
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 7/164 (4%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
S VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y
Sbjct: 20 SNRIMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQ 79
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
++VH W F + R+ AFT RG+ + ++ GD+ +FG+ET GL P AL+
Sbjct: 80 MRVHRDWDAF--VAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAP-ALV 136
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
D + +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 137 DRFAPE---QRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 176
>gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|452745721|ref|ZP_21945554.1| putative tRNA/rRNA methyltransferase [Mannheimia haemolytica
serotype 6 str. H23]
gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|452086323|gb|EME02713.1| putative tRNA/rRNA methyltransferase [Mannheimia haemolytica
serotype 6 str. H23]
Length = 159
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP N+G I R CA LH++ P GF DD KL+R+GLDY +V I+ +
Sbjct: 1 MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKLRRSGLDYHEFVDIQKY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ + F ++ KRL A T RG HS++ Y GD+L+FG E+ G+P L +
Sbjct: 61 KNFED----FLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPESRGIPKPLL----A 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTAS 243
E IRIPM + R +NLS SV + VYEA RQ Y+ A
Sbjct: 113 EMPMSQKIRIPMCKD-SRSMNLSNSVAVVVYEAWRQFGYQNAVAAQ 157
>gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
Length = 153
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 88/156 (56%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ PLGF++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S + G RL AFT +G+ EI+Y+ GD +FG E+ GLP E
Sbjct: 61 SDLQSCLEAL----GHPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +R+PM R LNLS +V + VYEA RQ
Sbjct: 117 QQ----RVRLPM-RAGCRSLNLSNTVAVTVYEAWRQ 147
>gi|417915983|ref|ZP_12559576.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
bv. 2 str. SK95]
gi|342831606|gb|EGU65920.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
bv. 2 str. SK95]
Length = 167
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + +++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKVYSEADLSTDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM + +VR LN+S +V + VYEA RQ N+ L+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLE 156
>gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1]
gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
GB-1]
Length = 153
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA S C LHL+ P+ F++DD +L+RAGLDY Y +K H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ E++Y+ GD +FG E+ GLP E L +
Sbjct: 61 ESLAGCLESL----GNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM R LNLS +V + VYEA RQ
Sbjct: 117 EQ----RLRLPM-RPGCRSLNLSNTVAVTVYEAWRQ 147
>gi|417924078|ref|ZP_12567531.1| putative RNA methyltransferase, TrmH family, group 2 [Streptococcus
mitis SK569]
gi|342836307|gb|EGU70522.1| putative RNA methyltransferase, TrmH family, group 2 [Streptococcus
mitis SK569]
Length = 167
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKVYSEVDLSTNEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
>gi|422851070|ref|ZP_16897740.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150]
gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150]
Length = 167
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 96/172 (55%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSE--ISYRKGDYLIFGSETSGLPPEALLDCTS 197
D+ Q +G RL +K +SE + Y +FG E GL PE + C
Sbjct: 64 ---LEDFMEQMDG--RLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGL-PEEFMRCHP 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
E +RIPM + +VR LN+S +V + VYEA RQ N+ L + D+
Sbjct: 118 EK----ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEADK 165
>gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
gi|336433956|ref|ZP_08613763.1| hypothetical protein HMPREF0991_02882 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794437|gb|EDN76857.1| putative RNA methyltransferase, TrmH family, group 2 [Ruminococcus
gnavus ATCC 29149]
gi|336014861|gb|EGN44692.1| hypothetical protein HMPREF0991_02882 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 166
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGF++++ LKRAG+DYW + ++
Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKALKRAGMDYWADLDVR-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ F D+ + G K +A TK ++E+ Y Y++FG E++G+P E L++
Sbjct: 59 -TYINFEDFLEKNPGAKIYMATTK-APKVYTEVQYEPDCYIMFGKESAGIPEEILVNHKE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ +RIPMV +R LNL SV I +YEA RQ N+ +
Sbjct: 117 D-----CVRIPMVGD-IRSLNLGNSVAIILYEALRQQNFAHM 152
>gi|217964965|ref|YP_002350643.1| TrmH family RNA methyltransferase [Listeria monocytogenes HCC23]
gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|386007665|ref|YP_005925943.1| TrmH family RNA methyltransferase [Listeria monocytogenes L99]
gi|386026258|ref|YP_005947034.1| putative rRNA methylase [Listeria monocytogenes M7]
gi|404407389|ref|YP_006690104.1| TrmH family RNA methyltransferase [Listeria monocytogenes SLCC2376]
gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
HCC23]
gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99]
gi|336022839|gb|AEH91976.1| putative rRNA methylase [Listeria monocytogenes M7]
gi|404241538|emb|CBY62938.1| RNA methyltransferase, TrmH family [Listeria monocytogenes
SLCC2376]
Length = 169
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I+RTCA + LHL+ PLGF DD LKRAGLDYW V + + +
Sbjct: 4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
EF F++ EG TK G +S+I Y K + +FG ET+GL P+ALL
Sbjct: 64 LDEF---FKKNEG-GEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGL-PDALLQEN 118
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM + ++R LNLS + I YEA RQ N+ L
Sbjct: 119 EEN----CLRIPMTD-HIRSLNLSNTAAILAYEALRQQNFGAL 156
>gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens
16/4]
Length = 165
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L ++L P+IP NTG I RTC A+ LHL+ PLGF + D +KRAG+DYW + + +
Sbjct: 1 MLNIILHEPEIPANTGNIGRTCCATGTRLHLIEPLGFVLTDKTVKRAGMDYWDKLEVFRY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W D F+ + + ++ T + TH+E++Y Y++FG E++G+P E L+D
Sbjct: 61 DDW----DDFKAKNPDAKIYMATTKAKRTHTEVNYEPDCYIMFGKESAGIPEEILVDNEE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
+RIPM +R LNLS SV I +YEA RQ ++ L+T +
Sbjct: 117 -----NCVRIPMGHD-IRSLNLSNSVAIILYEALRQNDFLGLETEGN 157
>gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6]
gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6]
Length = 167
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFSGLELVHTYEVDK 165
>gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
Length = 154
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVL P+IP NTG I R CA + C LHLV PLGF ++D +L+RAGLDY Y + VH
Sbjct: 1 MLAVVLFEPEIPPNTGNIIRLCANTGCELHLVEPLGFPLEDARLRRAGLDYHEYAALTVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
WA RQ +R+LA T R + +++ GD L+FG E+ GLP E L D
Sbjct: 61 KNWAA----CRQALVGRRMLAMTTRSSRPAFALAFAPGDVLVFGPESRGLPAEVLADFAD 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+R+PM+ R +NLS +V + V+EA RQ +
Sbjct: 117 SE----RLRLPMLPGQ-RSMNLSNAVAVTVFEAWRQQGF 150
>gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
gi|225207707|gb|EEG90061.1| putative RNA methyltransferase, TrmH family, group 2 [Coprococcus
comes ATCC 27758]
Length = 165
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 10/164 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGF++++ LKRAG+DYW ++ +
Sbjct: 1 MLNIVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+T+ ++RD+ + G K +A TK + ++++ Y Y++FG E++G+P E L
Sbjct: 58 TTYIDYRDFMEKNPGAKIYMATTK-SPNLYTDVKYEPDCYIMFGKESAGIPEEILCHHKK 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKT 241
+ +IRIPM+ +R LNL SV I +YEA RQ + + T
Sbjct: 117 D-----SIRIPMIGD-IRSLNLGNSVAIVLYEALRQNGFAGMNT 154
>gi|392422972|ref|YP_006459576.1| RNA methyltransferase [Pseudomonas stutzeri CCUG 29243]
gi|390985160|gb|AFM35153.1| RNA methyltransferase [Pseudomonas stutzeri CCUG 29243]
Length = 160
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 10/160 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA + C LHL+ PLG+++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERH 60
Query: 138 ----STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
S A +G RL AFT +G+ E+ YR+GD L+FG E+ GLPPE
Sbjct: 61 ADLPSCLARIGIDAANADG-PRLFAFTTKGSQPFHEVHYRRGDALLFGPESRGLPPEIRD 119
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+E +R+PM R LNLS +V +AVYEA RQ
Sbjct: 120 ALPNEQ----RLRLPM-RPDSRSLNLSNTVAVAVYEAWRQ 154
>gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
ACS-171-V-Col3]
gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
BVS033A4]
gi|417926543|ref|ZP_12569941.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
SY403409CC001050417]
gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
ACS-171-V-Col3]
gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
BVS033A4]
gi|341589058|gb|EGS32425.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
SY403409CC001050417]
Length = 155
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 8/163 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL+ P+ P NTG I RTC + LHLV P F++DD LKR+G+DYW V + +H
Sbjct: 1 MLNIVLLEPEKPSNTGNIGRTCVLTNTRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
EF +Y + G R+ T + E+ Y+ GDYL+FG E+SG+ + +
Sbjct: 61 DDIDEFLEYIK---GNDRVFYVETFATHYYHEVEYKDGDYLVFGKESSGIDKDLV----- 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+I+IPM R LNL+ S I ++EA RQ+N+ LK
Sbjct: 113 SKHKEHSIKIPMNMEIDRSLNLANSCNIVLFEALRQINFPGLK 155
>gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
Length = 177
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 88/162 (54%), Gaps = 9/162 (5%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVI 134
Q ++L P+IP NTG I R A + C LHLV PLGF + D L RAGLDY +
Sbjct: 11 QRAMFHIILFEPEIPPNTGNIIRLAANTGCHLHLVEPLGFVLTDKALARAGLDYHDLARV 70
Query: 135 KVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
VH+ W R + GE+R+ A T R H + +R GD +FG E+ GLPPE
Sbjct: 71 TVHTDWPACRAFL----GERRVFALTTRAQRRHDTVDFRPGDAFLFGPESRGLPPELRES 126
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PMV + R +NLS +V + V+EA RQ ++
Sbjct: 127 LPPEQ----RLRLPMVPSN-RSMNLSNAVAVMVFEAWRQQDF 163
>gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
Length = 168
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW V I HS
Sbjct: 4 HIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
+ G+++L +K +SE ++ G+ + +FG ET+GL PEA +
Sbjct: 64 LEALLAFL----GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGL-PEAFMRENE 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E +RIPM + +VR LNLS + + VYEA RQ + L+
Sbjct: 119 EK----CLRIPMNDEHVRSLNLSNTAAMIVYEALRQQGFPNLE 157
>gi|389809377|ref|ZP_10205281.1| putative rRNA methylase SpoU family protein [Rhodanobacter
thiooxydans LCS2]
gi|388441835|gb|EIL98075.1| putative rRNA methylase SpoU family protein [Rhodanobacter
thiooxydans LCS2]
Length = 157
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L P+IP NTG + R CA + LHL+ PLGF +DD +L+RAGLDY Y + V+
Sbjct: 1 MLHVILFRPEIPPNTGNVIRLCANTGAALHLIRPLGFALDDARLRRAGLDYHEYASVAVY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A D G R+ AF+ RG H + + GD L+FG ET+GLP E L +
Sbjct: 61 DDLASCLDAI----GAPRVFAFSTRGRVDHVDARFADGDALLFGCETAGLPGEVLETIPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM R LNLS +V +AVYEA RQL +
Sbjct: 117 ER----RLRLPM-RPDSRSLNLSNTVAVAVYEAWRQLGF 150
>gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
Length = 179
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 11/165 (6%)
Query: 74 SQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
SQ +VL P+IP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW +
Sbjct: 9 SQMSRNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLD 68
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEA 191
I + A+ F + RL TK T+SE +Y G+ Y +FG E +GLP +
Sbjct: 69 ITYYDNLAD----FMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDF 124
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ + + IRIPM + +VR LN+S +V + VYEA RQ +
Sbjct: 125 MREHPEK-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQQF 164
>gi|410459808|ref|ZP_11313514.1| rRNA methylase [Bacillus azotoformans LMG 9581]
gi|409928967|gb|EKN66058.1| rRNA methylase [Bacillus azotoformans LMG 9581]
Length = 157
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 96/164 (58%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ VVL P+IP NTG IARTCAA+ LHL+ PLGF +D LKRAGLDYW +V K+H+
Sbjct: 3 IHVVLYQPEIPANTGNIARTCAATNTPLHLIHPLGFSTEDKYLKRAGLDYWEFV--KIHN 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ +F Q +G K TK G + H++ + Y IFG ET+GLP + L+
Sbjct: 61 -YDSLDVFFEQNKGGKYYF-ITKFGKNKHTDFDLSNIEEEIYFIFGKETTGLPKD-LIAA 117
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +R+PM E VR LNLS + I VYEA RQ NY L
Sbjct: 118 HPEN----CLRLPMTEN-VRSLNLSNTAAIIVYEALRQQNYPGL 156
>gi|422596898|ref|ZP_16671176.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 151
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
A ++ G RL AFT +G+ + S+ D +FG E+ GLP + L +S
Sbjct: 61 PDLAS----CMEKIGNPRLFAFTTKGSRPFHDASFEPDDAFLFGPESRGLPADILDSLSS 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EH----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|340783372|ref|YP_004749979.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
SM-1]
gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|340557523|gb|AEK59277.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
SM-1]
Length = 168
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 68 EAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLD 127
EA +L VVL P+IP NTG + R CA + LHL+ PLGF DD +L+RAGLD
Sbjct: 4 EAYVAEGSTSWLDVVLFEPEIPPNTGNVIRLCANTGVVLHLIEPLGFAWDDARLRRAGLD 63
Query: 128 YWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGT-STHSEISYRKGDYLIFGSETSG 186
YW + ++ H W + R GE+R+LAFT + + + + GD L+FG ET G
Sbjct: 64 YWEFARVRRHEQWQDCRKAL----GERRVLAFTTKAEPGSFARARFAPGDVLLFGPETRG 119
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
LP + L +E +R+PM R +NLS SV +AV+EA RQ ++
Sbjct: 120 LPADLLNQFPAEQ----KLRLPM-RPGSRSMNLSNSVAVAVFEAWRQQDF 164
>gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
Length = 151
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 91/157 (57%), Gaps = 9/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L VVLV P+IP NTG I R C A+ LHLV PLGF + D +LKRAGLDYW V + V
Sbjct: 1 MLHVVLVEPEIPPNTGNIGRLCLATDTHLHLVKPLGFSLSDKELKRAGLDYWKDVRVSVW 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++AE + Q + R T + + + +R GD+L+FG ET GL PE LL+
Sbjct: 61 ESYAELQ---AAQSADARYFYLTTKVQRPYWDEQFRDGDFLVFGRETKGL-PEPLLESNR 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ + IPM R LNL+ SVGI +YEA RQL
Sbjct: 117 DR----CLTIPMTPQ-TRSLNLATSVGIVLYEAVRQL 148
>gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
str. MIT 9301]
gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
marinus str. MIT 9301]
Length = 160
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 14/166 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
++V L P+IP NTG IAR+CAA L+L+ PLGF+++D LKRAGLDYWP V + +
Sbjct: 1 MEVALFEPRIPQNTGNIARSCAAFDIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNRYE 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ + F + KR+++F+K+ + +++ D L+FG E SGL P++++D +
Sbjct: 61 NFEK----FMTAKTTKRIISFSKKNGLYLKDFKFKQDDILLFGREDSGL-PDSIIDKSDF 115
Query: 199 TFGGGTIRIPMVET------YVRCLNLSVSVGIAVYEAARQLNYEQ 238
+I +P ++T VR LNLSV+ GIA+YEA +Q+N++
Sbjct: 116 LI---SIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAHKQINFQN 158
>gi|357054874|ref|ZP_09115953.1| hypothetical protein HMPREF9467_02925 [Clostridium clostridioforme
2_1_49FAA]
gi|355383811|gb|EHG30886.1| hypothetical protein HMPREF9467_02925 [Clostridium clostridioforme
2_1_49FAA]
Length = 168
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 8/163 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ +VL+ P++P NTG I RTC A+ LHL+ PLGF++++ LKRAGLDYW + + V+
Sbjct: 1 MMNIVLLEPEMPSNTGNIGRTCVATRTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
S + +F + R + + T + +S++SYR YL+FG E++G+P E L+D +
Sbjct: 61 SDYQDFLE--RNSQARGSMYFATTKAHKVYSDVSYRPDCYLMFGRESAGIPEEILVD--N 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E + IRIPM +R LNLS S I +YEA RQ + +L+
Sbjct: 117 EDY---CIRIPMWGD-IRSLNLSNSAAIVLYEALRQNGFGKLE 155
>gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
Aspo-2]
Length = 150
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 11/155 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+++VL P+IP NTG IAR CAA+ LHL+ PLGF +DD L+RAGLDYWP+V + VH
Sbjct: 1 MRIVLYQPEIPPNTGNIARLCAATRTPLHLIEPLGFTIDDKHLRRAGLDYWPHVDVTVHP 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F D+ + + +LA T R T+ H ++R D ++ G ET GLP + L
Sbjct: 61 ---DFDDFLTRVSPARLVLAST-RATAPHHRFAFRPDDAIVMGPETRGLPADML-----A 111
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ G +RIP + VR LNLS + G+ ++EA RQ
Sbjct: 112 RYPDG-VRIP-IWGEVRSLNLSTATGVLLFEALRQ 144
>gi|398835204|ref|ZP_10592569.1| putative rRNA methylase SpoU family [Herbaspirillum sp. YR522]
gi|398216779|gb|EJN03320.1| putative rRNA methylase SpoU family [Herbaspirillum sp. YR522]
Length = 160
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 92/162 (56%), Gaps = 9/162 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG I R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFHVVLVEPEIPPNTGNIIRLCANTGVQLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVH 60
Query: 138 STWAEFRDYFRQQE--GEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
W F R R+ A T G++ + ++++ GD +FG+ET GL P+
Sbjct: 61 PDWNSFLARRRADPLFDPTRMFAMTTHGSTPFAGLAFQPGDTFVFGAETRGLAPQ----- 115
Query: 196 TSETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E+F G IR+PM R LNLS +V + VYEA RQ Y
Sbjct: 116 LRESFAPGQRIRLPMRPDN-RSLNLSNTVAVVVYEAWRQNGY 156
>gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
Length = 164
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 10/162 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGF++++ +KRAG+DYW + +
Sbjct: 1 MLNIVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKAIKRAGMDYWDDLDV--- 57
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+T+ +F+D+ + G K +A TK + +++++Y Y++FG E++G+P E L+
Sbjct: 58 TTYIDFQDFMEKNPGAKIYMATTK-APNVYTDVNYEPDCYIMFGKESAGIPEEILIHHKE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ +IRIPMV +R LNL SV I +YEA RQ ++ +
Sbjct: 117 D-----SIRIPMVGD-IRSLNLGNSVAIVLYEALRQNGFQNM 152
>gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
gi|149753696|gb|EDM63627.1| putative RNA methyltransferase, TrmH family, group 2 [Dorea
longicatena DSM 13814]
Length = 163
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 10/156 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I RTC A+ LHL+ PLGF++++ LKRAG+DYW ++ ++
Sbjct: 1 MLNIVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVR-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ ++ D+ + G K +A TK ++E++Y Y++FG E++G+P E L++
Sbjct: 59 -TYIDYNDFLEKNPGAKIYMATTK-APKVYTEVNYEPDCYIMFGKESAGIPEEILVEHKE 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+ +RIPMV +R LNL SV I +YEA RQ
Sbjct: 117 D-----CVRIPMVGD-IRSLNLGNSVAIVLYEALRQ 146
>gi|450049731|ref|ZP_21839852.1| putative rRNA methylase [Streptococcus mutans NFSM1]
gi|449203482|gb|EMC04341.1| putative rRNA methylase [Streptococcus mutans NFSM1]
Length = 182
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 15/179 (8%)
Query: 73 LSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYV 132
LS+N VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW +
Sbjct: 15 LSRN---HVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKL 71
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPE 190
+ + + +F + +L TK T+S+ +Y + Y +FG E GLP E
Sbjct: 72 DVHFYDSLNDFMNI-----CSGKLHLITKFADKTYSDENYGDSEHHYFLFGREDKGLPEE 126
Query: 191 ALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ + +D+
Sbjct: 127 FMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYAVDK 180
>gi|419782905|ref|ZP_14308702.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
oralis SK610]
gi|383182831|gb|EIC75380.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
oralis SK610]
Length = 167
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + D +
Sbjct: 64 ---LEDFMSQMKGQVYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMRDHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ ++ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQHFAGLELVHTYEVDK 165
>gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2]
Length = 156
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L + L P+IP NTG I R A + LHL+ PLGF +++ KL+RAGLDY + ++VH
Sbjct: 1 MLHIALFEPEIPPNTGNIIRLAANTGAQLHLIEPLGFSLEEKKLRRAGLDYSEFAALQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ F++ Q RL A T +G+ HS+ ++ GD L+FG ET GL PE +LD
Sbjct: 61 RDFSAFQESVVGQ----RLFAMTTKGSRPHSQACFQDGDVLLFGPETRGL-PEQILDSLP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
T +R+PMV R LNLS +V + +YEA RQL Y
Sbjct: 116 AT---QRLRLPMV-AESRSLNLSNAVAVTLYEAWRQLGY 150
>gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
DSM 20016]
gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
Length = 169
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 89/172 (51%), Gaps = 10/172 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P P NTG IARTCA + LHL+ PLGF DD +KRAGLDYW V I H
Sbjct: 4 HIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHED 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR-KGD-YLIFGSETSGLPPEALLDCTS 197
F + RL +K T +S++ Y +GD Y +FG ET+GLP +
Sbjct: 64 LPSF---MKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFM----- 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ + IRIP + +R LNLS S I +YEA RQ N+ L D+
Sbjct: 116 QKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQNFPNLARVHKYEFDK 167
>gi|406666748|ref|ZP_11074513.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Bacillus isronensis
B3W22]
gi|405385518|gb|EKB44952.1| tRNA (cytidine(34)-2'-O)-methyltransferase [Bacillus isronensis
B3W22]
Length = 157
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 9/162 (5%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG IARTCA + LHL+ PLGF DD LKRAGLDYW +V + H +
Sbjct: 4 HIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWEHVNVVYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLL-AFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+F +Y ++G+ L+ ++ +TH + +G Y +FG ET+GLP E ++
Sbjct: 64 LEDFIEY--SKDGDVYLIETYSDEPFTTHDFSNSERGLYFMFGRETTGLPKEF-----AK 116
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIP + ++R LNLS + I +YE RQ NY LK
Sbjct: 117 ERADMCLRIPQSD-HIRSLNLSNTAAIVIYEVLRQQNYPGLK 157
>gi|359782343|ref|ZP_09285564.1| RNA methyltransferase [Pseudomonas psychrotolerans L19]
gi|359369610|gb|EHK70180.1| RNA methyltransferase [Pseudomonas psychrotolerans L19]
Length = 155
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
++L P+IP NTG + R CA + C LHL+ PLGF +DD KL+RAGLDY + ++ H
Sbjct: 1 MFDIILYQPEIPPNTGNVIRLCAITGCRLHLIEPLGFALDDKKLRRAGLDYHEWSSVRTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ A + RLLAFT + + +EI+Y GD L+FG E+ GLP E L
Sbjct: 61 ASLAACIADLQ----PPRLLAFTTKASHPFTEIAYAPGDALLFGPESRGLPAEVLESLPP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM+ R LNLS +V +AVYE RQL +
Sbjct: 117 EQ----RLRLPMLPNR-RSLNLSNTVAVAVYEGWRQLGF 150
>gi|339492455|ref|YP_004712748.1| RNA methyltransferase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338799827|gb|AEJ03659.1| RNA methyltransferase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 160
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 10/160 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA + C LHL+ PLG+++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERH 60
Query: 138 ----STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALL 193
S A +G RL AFT +G+ E+ YR+GD L+FG E+ GLPPE
Sbjct: 61 ADLPSCLARIGIDAANPDG-PRLFAFTTKGSQPFHEVRYRRGDALLFGPESRGLPPEIRD 119
Query: 194 DCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+E +R+PM R LNLS +V +AVYEA RQ
Sbjct: 120 ALPNEQ----RLRLPM-RPDSRSLNLSNTVAVAVYEAWRQ 154
>gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
gi|417847585|ref|ZP_12493547.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
SK1073]
gi|421265535|ref|ZP_15716419.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae SPAR27]
gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
gi|339456419|gb|EGP69010.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
SK1073]
gi|395869557|gb|EJG80672.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae SPAR27]
Length = 167
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
>gi|452850835|ref|YP_007492519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Desulfovibrio
piezophilus]
gi|451894489|emb|CCH47368.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL [Desulfovibrio
piezophilus]
Length = 150
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+Q+ L P+IP NTG IAR CAA+ LHL+ PLGF VDD L+RAGLDYWP+V + +HS
Sbjct: 1 MQIALYEPEIPPNTGNIARLCAATKTPLHLIEPLGFLVDDKHLRRAGLDYWPHVDVSIHS 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ F D + + RL+ + + + H + + D L+ G ET GLP + L +
Sbjct: 61 NFEVFLDTVKPE----RLVLASAKAATAHHKFQFHSNDVLLLGPETRGLPQDLLEQYPT- 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+RIP + VR LNLS + GI ++EA RQ
Sbjct: 116 -----CVRIP-IWGKVRSLNLSTATGILLFEALRQ 144
>gi|398920845|ref|ZP_10659538.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM49]
gi|398930097|ref|ZP_10664344.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM48]
gi|398165768|gb|EJM53879.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM48]
gi|398167326|gb|EJM55394.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM49]
Length = 151
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G R+ AFT +G+ + S+ GD +FG E+ GLP E L +
Sbjct: 61 ADLASCLESL----GHPRVFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPAEVLDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
Length = 168
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I S
Sbjct: 5 HIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDI---SY 61
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
+ D+ + +G+ L++ + + S Y +FG E GLP E + +
Sbjct: 62 YESLEDFMEKMDGQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEK- 120
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ + D+
Sbjct: 121 ----ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFVGLELVHEYEADK 166
>gi|335048439|ref|ZP_08541459.1| RNA methyltransferase, TrmH family, group 2 [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333758239|gb|EGL35797.1| RNA methyltransferase, TrmH family, group 2 [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 165
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 10/163 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL+ P+IP NTG I RTC A+ LHL+ PLGF +DD +KR+GLDYW + + V+
Sbjct: 1 MFNIVLLEPEIPFNTGAIGRTCVATDTKLHLIKPLGFSLDDKMVKRSGLDYWDKLKLFVY 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
D++ + A TK T+ ++ Y DY++FG E+ G+P E L+
Sbjct: 61 EN---IEDFYEKNPNANIYFATTK-AKRTYDKVEYSPNDYIMFGKESKGIPEEILVKNE- 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
G +RIPM +R LNLS SVGI +YEA RQ ++ +L+
Sbjct: 116 ----GHCVRIPMWGE-IRSLNLSNSVGIVLYEALRQQDFSELE 153
>gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
baltica OS145]
gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
baltica OS145]
Length = 154
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG + R A + LHL+ PLGF +D+ K++RAGLDY +K+H
Sbjct: 1 MLHLVLFEPEIPPNTGNVIRLAANTGMQLHLIEPLGFDLDEKKVRRAGLDYHALTQVKIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W++ F + R+ A T +G++ ++E++Y + D L+FG ET GLP + L
Sbjct: 61 KNWSD----FLENVDYNRIFACTTKGSTRYTEVAYEENDVLLFGPETRGLPMDVLQTFPQ 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E + +R+PMV R LNLS SV I YEA RQL ++
Sbjct: 117 ENW----LRLPMVPD-SRSLNLSNSVAIFTYEAWRQLGFK 151
>gi|421619661|ref|ZP_16060612.1| RNA methyltransferase [Pseudomonas stutzeri KOS6]
gi|409778273|gb|EKN57975.1| RNA methyltransferase [Pseudomonas stutzeri KOS6]
Length = 160
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 8/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG I R CA + C LHL+ PLG+++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERH 60
Query: 138 STWAEFRDYF---RQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
+ + RL AFT +G+ E+ YR+GD L+FG E+ GLPPE
Sbjct: 61 ADLPACLQRIGIDQTNPDGPRLFAFTTKGSQPFHEVRYRRGDALLFGPESRGLPPEIRDA 120
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+E +R+PM R LNLS +V +AVYEA RQ
Sbjct: 121 LPNEQ----RLRLPM-RPDSRSLNLSNTVAVAVYEAWRQ 154
>gi|449925310|ref|ZP_21800199.1| putative rRNA methylase [Streptococcus mutans 4SM1]
gi|449161713|gb|EMB64891.1| putative rRNA methylase [Streptococcus mutans 4SM1]
Length = 182
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFSDKTYSDENYGDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIPM + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPMNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>gi|358068012|ref|ZP_09154484.1| hypothetical protein HMPREF9333_01365 [Johnsonella ignava ATCC
51276]
gi|356693981|gb|EHI55650.1| hypothetical protein HMPREF9333_01365 [Johnsonella ignava ATCC
51276]
Length = 168
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 8/166 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL+ P+IP NTG I RTCAA LHL+ PLGF++++ +KR+GLDYW + ++ ++
Sbjct: 1 MNIVLLEPEIPSNTGNIGRTCAAVGAVLHLIEPLGFRLNEKAIKRSGLDYWDKLDVRRYT 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
A+F Y + K + T + + ++ + DY++FG E++G+P E L+
Sbjct: 61 DTADF--YEKNPAALKCIYMATTKAQKIYCDVKFNPDDYIMFGKESAGIPEEMLVQNRQ- 117
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASD 244
G IRIPM +R LNLS SV I +YEA RQ N++ + T D
Sbjct: 118 ----GCIRIPMWGD-IRSLNLSNSVSIILYEALRQNNFKNMATKGD 158
>gi|395797158|ref|ZP_10476449.1| TrmH family RNA methyltransferase [Pseudomonas sp. Ag1]
gi|421143104|ref|ZP_15603063.1| chorismate mutase [Pseudomonas fluorescens BBc6R8]
gi|395338582|gb|EJF70432.1| TrmH family RNA methyltransferase [Pseudomonas sp. Ag1]
gi|404505673|gb|EKA19684.1| chorismate mutase [Pseudomonas fluorescens BBc6R8]
Length = 151
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF +DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + RL AFT +G+ + S+ +GD +FG E+ GLP + +LD
Sbjct: 61 ADLASCLESLNH----PRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAD-VLDALP 115
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ G +R+PM E R LNLS +V +AVYE RQL ++
Sbjct: 116 D---GHRLRLPMREG-CRSLNLSNTVAVAVYEGWRQLGFK 151
>gi|417934987|ref|ZP_12578307.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
bv. 2 str. F0392]
gi|340771557|gb|EGR94072.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
bv. 2 str. F0392]
Length = 167
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A D Q +G+ L++ + +++S + Y +FG E GLP + + + +
Sbjct: 64 LA---DCMSQMKGQLYLISKFAEKVYSEADLSTDEDHYFLFGREDKGLPEDFMRNHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
>gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
Length = 180
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I +
Sbjct: 17 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDN 76
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSE--ISYRKGDYLIFGSETSGLPPEALLDCTS 197
A+F + +++L +K +SE +S + Y +FG E GLP + + +
Sbjct: 77 LADF-----MSQMKEKLYLISKFAEKVYSEADLSTDEDHYFLFGREDKGLPEDFMREHPE 131
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+ +RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 132 K-----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 178
>gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis F0405]
gi|417918332|ref|ZP_12561884.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis SK236]
gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis F0405]
gi|342828787|gb|EGU63153.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
parasanguinis SK236]
Length = 180
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 11/165 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+ F +DD K+KRAGLDYW + ++ + +
Sbjct: 16 HIVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDS 75
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
EF + +G+ L+ +K T+S++SY+ G Y +FG E GLP + +
Sbjct: 76 LEEFME--AASDGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEE 131
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ IRIPM + +VR LN+S +V + VYEA RQ ++ L+ +
Sbjct: 132 K-----AIRIPMNDEHVRSLNVSNTVCMIVYEALRQQGFKGLELS 171
>gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
thiodismutans ASO3-1]
Length = 153
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 93/156 (59%), Gaps = 10/156 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG IAR CAA+ LHLVGPLGF +DD LKRAGLDYW +V + +
Sbjct: 1 MHIVLYQPRIPPNTGAIARLCAATRTPLHLVGPLGFSLDDKYLKRAGLDYWEHVELTLWK 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W E+R + + RL+ + R + ++ SY D+LI G ET GLP + TS+
Sbjct: 61 NWEEYR---QNLDKSHRLIMTSARQGADYTRHSYSFQDHLILGPETWGLPEK----ITSQ 113
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
IRIP + VR LNLS + GI +YE RQL
Sbjct: 114 --ADHLIRIP-IWGEVRSLNLSNAAGIILYEGYRQL 146
>gi|400289707|ref|ZP_10791734.1| putative rRNA methylase [Streptococcus ratti FA-1 = DSM 20564]
gi|399920498|gb|EJN93315.1| putative rRNA methylase [Streptococcus ratti FA-1 = DSM 20564]
Length = 182
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 12/163 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + + ++ +
Sbjct: 19 HVVLFEPQIPANTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHLYDS 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYR--KGDYLIFGSETSGLPPEALLDCTS 197
+F D RL TK T+S+ +Y + Y +FG E GLP +
Sbjct: 79 LKDFMD-----SCSGRLHLITKFAEKTYSDENYDDTENHYFMFGREDKGLPETFM----- 128
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM + +VR LNLS +V + VYEA RQ + L+
Sbjct: 129 RQYAEQALRIPMNDQHVRSLNLSNAVCMIVYEALRQQQFTGLE 171
>gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
gi|418977474|ref|ZP_13525291.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
SK575]
gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae Hungary19A-6]
gi|383349810|gb|EID27729.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus mitis
SK575]
Length = 167
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
>gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
gi|337292710|emb|CCB90717.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase CspR
[Waddlia chondrophila 2032/99]
Length = 154
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 93/155 (60%), Gaps = 11/155 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
++VVL PQIP NTG I RTC+ + L+LV PLGFQ+ D LKRAGLDYW V ++V
Sbjct: 2 VKVVLYQPQIPQNTGNIVRTCSVTGSDLYLVAPLGFQITDRWLKRAGLDYWEGVNMQVLE 61
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
E + + F+ +S+IS+ D+L+FGSET GL P+ ++ E
Sbjct: 62 NLEEVLE-----SQQTPFYFFSSHAKRPYSKISFTTDDWLVFGSETHGL-PKTFVEKWPE 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
F I +PM+E RCLNL+ SVGIAVYEA RQ
Sbjct: 116 KF----ISLPMIEG-KRCLNLATSVGIAVYEAYRQ 145
>gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 148
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 11/155 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
++++L PQIP N G I RTCA + L +V PLGF D LKRAGLDYW V + S
Sbjct: 1 MKIILFQPQIPQNAGNIVRTCAVTGTDLMMVHPLGFSTHDRWLKRAGLDYWEGVSV---S 57
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+Y Q+ F+ + T+ ++E+SY +LIFGSETSGLP E
Sbjct: 58 FIENLENYLENQQAS--FYFFSSKATTLYTEVSYAADSFLIFGSETSGLP-----SIFQE 110
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+G ++IPM + VRCLNL+ S GIA+YEA RQ
Sbjct: 111 KWGNRFVKIPM-KPKVRCLNLATSAGIALYEAWRQ 144
>gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6]
gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6]
Length = 180
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 17 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 76
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 77 ---LEDFMSQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK- 132
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 133 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 178
>gi|418007502|ref|ZP_12647384.1| tRNA (cytosine34-2'-O-)-methyltransferase [Lactobacillus casei UW4]
gi|410548741|gb|EKQ22929.1| tRNA (cytosine34-2'-O-)-methyltransferase [Lactobacillus casei UW4]
Length = 169
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 94/166 (56%), Gaps = 12/166 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P IP NTG IARTCAA+ LHL+ PLGF+ DD L+RAGLDYW V I H +
Sbjct: 4 HIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIYHDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDCT 196
+F F++ + L TK T+S+ Y D Y +FG ET+GLP + D
Sbjct: 64 LDDFMATFKEPQ---HLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHA 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ +RIPM + VR LNLS + +YEA RQ ++ L+T+
Sbjct: 121 DQ-----CLRIPMTDN-VRALNLSNCAALVIYEALRQQHFAGLETS 160
>gi|398870731|ref|ZP_10626051.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM74]
gi|398207360|gb|EJM94109.1| rRNA methylase, putative, group 2 [Pseudomonas sp. GM74]
Length = 151
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 9/156 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+L P+IP NTG + R CA S C LHL+ PLGF++DD +L+RAGLDY Y ++ H
Sbjct: 1 MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ A + G RL AFT +G+ + S+ GD +FG E+ GLP + L
Sbjct: 61 ADLANCLESL----GHPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADVLDALPG 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E +R+PM E R LNLS +V +AVYEA RQ
Sbjct: 117 EQ----RLRLPMREG-CRSLNLSNTVAVAVYEAWRQ 147
>gi|336425662|ref|ZP_08605681.1| hypothetical protein HMPREF0994_01687 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336011784|gb|EGN41725.1| hypothetical protein HMPREF0994_01687 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 164
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 101/161 (62%), Gaps = 10/161 (6%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I RTC A+ LHL+ PLGF++++ ++KRAG+DYW + ++ +
Sbjct: 1 MNIVLHQPEIPANTGNIGRTCVATGSVLHLIEPLGFRLNEKEIKRAGMDYWKDLDVRRYV 60
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
+ EF + G K +A TK ++++S+ D+++FG E++G+P E L+D
Sbjct: 61 NYEEF---LEKNPGAKIWMATTK-ARHVYTDVSFGPDDFIMFGKESAGIPEEILVDNED- 115
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
IRIPM++ +R LNLS SV + +YEA RQ N+E +
Sbjct: 116 ----TCIRIPMLDK-IRSLNLSNSVAVVLYEALRQNNFEGM 151
>gi|385259711|ref|ZP_10037875.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
sp. SK140]
gi|385193364|gb|EIF40734.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
sp. SK140]
Length = 167
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 8/161 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
A D+ + +G+ L++ + ++ + Y +FG E GLP E + + +
Sbjct: 64 LA---DFMEKMDGQLYLISKFAEKVYSDADFTTEGDHYFLFGREDKGLPEEFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+RIPM + +VR LN+S +V + VYEA RQ N+ L+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLE 156
>gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
Length = 169
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I+RTCA + LHL+ PLGF DD LKRAGLDYW V + + +
Sbjct: 4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
EF F + EG TK G +S+I+Y K + +FG ET+GL P+ALL
Sbjct: 64 LDEF---FEKNEG-GEFYYITKFGRHVYSDINYSDTNKDYFFVFGKETTGL-PDALLQEN 118
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM + ++R LNLS + I YEA RQ N+ L
Sbjct: 119 EE----NCLRIPMTD-HIRSLNLSNTAAILAYEALRQQNFGAL 156
>gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
Length = 155
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL+ P+ P NTG I RTC + LHLV P F++DD LKR+G+DYW V + +H
Sbjct: 1 MLNIVLLEPEKPSNTGNIGRTCVLTNSRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
EF +Y + G R+ T+ + E+ Y+ GD+ +FG E+SG+ + +
Sbjct: 61 DDMDEFLEYIK---GNDRVFYVETFATNYYHELEYQDGDFFVFGKESSGIDKDLV----- 112
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +I+IPM T R LNL+ S I ++EA RQ+++ LK
Sbjct: 113 DKHKDHSIKIPMNMTIDRSLNLANSCNIVLFEALRQIDFPGLK 155
>gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae CDC3059-06]
gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae Taiwan19F-14]
gi|387787684|ref|YP_006252752.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae ST556]
gi|418078001|ref|ZP_12715225.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 4027-06]
gi|418080160|ref|ZP_12717376.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 6735-05]
gi|418088894|ref|ZP_12726053.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA43265]
gi|418093353|ref|ZP_12730483.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA49138]
gi|418097875|ref|ZP_12734976.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 6901-05]
gi|418104546|ref|ZP_12741606.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA44500]
gi|418114059|ref|ZP_12751052.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 5787-06]
gi|418116222|ref|ZP_12753199.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 6963-05]
gi|418129666|ref|ZP_12766550.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA07643]
gi|418134187|ref|ZP_12771047.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA11426]
gi|418141115|ref|ZP_12777928.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA13455]
gi|418145709|ref|ZP_12782495.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA13637]
gi|418147949|ref|ZP_12784716.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA13856]
gi|418163849|ref|ZP_12800525.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17371]
gi|418172866|ref|ZP_12809480.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA41277]
gi|418177536|ref|ZP_12814120.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA41565]
gi|418186502|ref|ZP_12823032.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA47360]
gi|418229232|ref|ZP_12855841.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae EU-NP01]
gi|419433162|ref|ZP_13973282.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA40183]
gi|419439707|ref|ZP_13979764.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA40410]
gi|419463638|ref|ZP_14003534.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA04175]
gi|419477156|ref|ZP_14016982.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA18068]
gi|419501258|ref|ZP_14040945.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA47628]
gi|419518318|ref|ZP_14057928.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA08825]
gi|419528273|ref|ZP_14067815.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17719]
gi|419533920|ref|ZP_14073428.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17457]
gi|421233517|ref|ZP_15690141.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
2061617]
gi|421248820|ref|ZP_15705283.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
2082239]
gi|421269922|ref|ZP_15720779.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae SPAR48]
gi|421280489|ref|ZP_15731288.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
pneumoniae GA04672]
gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae CDC3059-06]
gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae Taiwan19F-14]
gi|353749023|gb|EHD29674.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 4027-06]
gi|353754479|gb|EHD35092.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 6735-05]
gi|353763396|gb|EHD43951.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA43265]
gi|353766918|gb|EHD47457.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA49138]
gi|353771348|gb|EHD51858.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 6901-05]
gi|353778980|gb|EHD59446.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA44500]
gi|353788723|gb|EHD69120.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 5787-06]
gi|353791860|gb|EHD72234.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae 6963-05]
gi|353802958|gb|EHD83250.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA07643]
gi|353805366|gb|EHD85640.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA13455]
gi|353814147|gb|EHD94374.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA13856]
gi|353816583|gb|EHD96792.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA13637]
gi|353833275|gb|EHE13387.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17371]
gi|353839565|gb|EHE19639.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA41277]
gi|353844310|gb|EHE24353.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA41565]
gi|353853088|gb|EHE33071.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA47360]
gi|353890371|gb|EHE70134.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae EU-NP01]
gi|353904174|gb|EHE79688.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA11426]
gi|379137426|gb|AFC94217.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
pneumoniae ST556]
gi|379540917|gb|EHZ06088.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA04175]
gi|379564296|gb|EHZ29292.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17719]
gi|379567955|gb|EHZ32938.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA18068]
gi|379568882|gb|EHZ33861.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
GA17457]
gi|379578285|gb|EHZ43199.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA40183]
gi|379582192|gb|EHZ47075.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA40410]
gi|379603503|gb|EHZ68272.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA47628]
gi|379642531|gb|EIA07063.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae GA08825]
gi|395603357|gb|EJG63494.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
2061617]
gi|395615449|gb|EJG75465.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
2082239]
gi|395870574|gb|EJG81687.1| putative tRNA (cytidine/uridine-2'-O-)-methyltransferase
[Streptococcus pneumoniae SPAR48]
gi|395883846|gb|EJG94888.1| putative tRNA (cytidine(34)-2'-O)-methyltransferase [Streptococcus
pneumoniae GA04672]
Length = 167
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + I + +
Sbjct: 4 HIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYES 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSET 199
D+ Q +G+ L++ + ++S + Y +FG E GLP + + + +
Sbjct: 64 ---LEDFMSQMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK- 119
Query: 200 FGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDR 249
+RIPM + +VR LN+S +V + VYEA RQ N+ L+ +D+
Sbjct: 120 ----ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQNFAGLELVHTYEVDK 165
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,225,925,845
Number of Sequences: 23463169
Number of extensions: 181572796
Number of successful extensions: 332978
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2644
Number of HSP's successfully gapped in prelim test: 990
Number of HSP's that attempted gapping in prelim test: 324757
Number of HSP's gapped (non-prelim): 3651
length of query: 260
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 121
effective length of database: 9,097,814,876
effective search space: 1100835599996
effective search space used: 1100835599996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)