BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024933
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine.
pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine
Length = 165
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK 135
N L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK
Sbjct: 2 NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIK 61
Query: 136 VHSTWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD 194
H + F D + + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 62 HHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDA 121
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 122 LPAQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 158
>pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
Methyltransferase (Spou)
pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
Methyltransferase With A Cofactor Bound At A Site Formed
By A Knot
Length = 160
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HS++ ++ GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase
From Burkholderia Pseudomallei
pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase
From Burkholderia Pseudomallei
Length = 160
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 7/159 (4%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 6 FNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHR 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
W F + R+ AFT RG+ + ++ GD+ +FG+ET GL P AL+D +
Sbjct: 66 DWDAF--VAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAP-ALVDRFAP 122
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V + V+EA RQ +E
Sbjct: 123 E---QRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 157
>pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
Methyltransferase From Streptococcus Mutans Ua159
pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
Methyltransferase From Streptococcus Mutans Ua159
Length = 182
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 74 SQNKFL-----QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDY 128
+NK L VVL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDY
Sbjct: 8 KENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDY 67
Query: 129 WPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSG 186
W + + + + +F + +L TK T+S+ +Y + Y +FG E G
Sbjct: 68 WDKLDVHFYDSLNDFMNI-----CSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKG 122
Query: 187 LPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTC 246
LP E + + + +RIP+ + +VR LNLS +V + VYEA RQ ++ L+ +
Sbjct: 123 LPEEFMRQHSEK-----ALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHTYA 177
Query: 247 IDR 249
+D+
Sbjct: 178 VDK 180
>pdb|1V2X|A Chain A, Trmh
Length = 194
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTC-AASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L V+L + P N I RTC A H V P G V G W Y ++VH
Sbjct: 23 LTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTG-GVPTFNETSGGSHKWVY--LRVH 79
Query: 138 STWAE-FRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
E FR F ++ G + E+ Y K ++FG+E G+ EAL
Sbjct: 80 PDLHEAFR--FLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEAL---- 133
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
G I+IPM+ V+ LN+SV+ + ++EA RQ
Sbjct: 134 --ALADGAIKIPML-GMVQSLNVSVAAAVILFEAQRQ 167
>pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
Length = 277
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 81 VVLVSPQIPGNTGCIARTCAA-SACGLHLVGPLGFQVDDTKLKRAGLDY---WPYVVIKV 136
VVL +I GN G I RT A A G+ LV + D +L RA Y P V+
Sbjct: 122 VVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADR 181
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY-LIFGSETSGLPPEALLDC 195
+ RD + L+ G ++ R L+FGSE G P L
Sbjct: 182 EEAVSFLRD------NDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGG--PSGLFQE 233
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
S GT+ IPM+ + LN+SVSVGIA++E
Sbjct: 234 AS----AGTVSIPMLSS-TESLNVSVSVGIALHE 262
>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
Length = 272
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 81 VVLVSPQIPGNTGCIARTCAA-SACGLHLVGPLGFQVDDTKLKRAGLDY---WPYVVIKV 136
VVL +I GN G I RT A A G+ LV + D +L+RA Y P V+
Sbjct: 122 VVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGR 181
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD-----YLIFGSETSGLPPEA 191
A RD Q L+ G + E+ GD L+FGSE G P
Sbjct: 182 EEAIAFIRDSGMQ------LMTLKADGDISVKEL----GDNPDRLALLFGSEKGG--PSD 229
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
L + S ++ IPM+ + LN+SVS+GIA++E
Sbjct: 230 LFEEASS----ASVSIPMM-SQTESLNVSVSLGIALHE 262
>pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
ENZYME
Length = 211
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 154 KRLLAFTKRGTS------THSEISYRKGDY-----LIFGSETSGLPPEALLDCTSETFGG 202
++LL F RG + +++R+ DY L+ G+E G+ PE +
Sbjct: 88 QKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIV------EIAD 141
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM + LN+SV+ GI +YEA RQ
Sbjct: 142 KKIVIPMY-GMAQSLNVSVATGIILYEAQRQ 171
>pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
Length = 184
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 23/163 (14%)
Query: 89 PGNTGCIARTCAASACGLHLVGPLGFQVDD--TKLKRAGLDYWPYVVIKVHSTWAEFRDY 146
P N G + RTC + +VG L D L + + P V +K + DY
Sbjct: 37 PTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLVEVKP----PQLIDY 92
Query: 147 FRQQEGEKRLLAFTKRGTST--HSEISYRKGDYLIFGSETSGLPPEAL--LDCTSETFGG 202
+Q++ E + ++ + ++ + + L+ G+E G+P + LD E
Sbjct: 93 LQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQ 152
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
G I R LN+ VS + ++E RQ QL + DT
Sbjct: 153 GII---------RSLNVHVSGALLIWEYTRQ----QLLSHGDT 182
>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
Length = 287
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 16/165 (9%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTC-AASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
+ FL V+ P PGN G I R+ A A GL + G D ++ + +
Sbjct: 123 REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPA 182
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY-----LIFGSETSGLP 188
++V S E D+ + + GT H + D+ L+ G+ET+G
Sbjct: 183 VRVPSP-GEVMDWVEARRAAGTPIVLV--GTDEHGDCDVFDFDFTQPTLLLIGNETAG-- 237
Query: 189 PEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
L T T+ IPM + + + I +YEA RQ
Sbjct: 238 ----LSNAWRTLCDYTVSIPMAGSASSLNAANAATAI-LYEAVRQ 277
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 33/163 (20%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIK--- 135
L +V V + PGN G + R+ A+ LV G+D + VI+
Sbjct: 117 LILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-------------GGVDLYSPQVIRNST 163
Query: 136 --------VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGL 187
+ ++ +E D+ +Q L+A T + + E + R + G E GL
Sbjct: 164 GVVFSLRTLAASESEVLDWIKQHN--LPLVATTPHAEALYWEANLRPPVAIAVGPEHEGL 221
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA 230
L ++ +RIPM + LN+SVS + +YEA
Sbjct: 222 RAAWLEAAQTQ------VRIPM-QGQADSLNVSVSAALLLYEA 257
>pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From
Haemophilus Influenzae Rd Kw20
pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From
Haemophilus Influenzae Rd Kw20
Length = 244
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 170 ISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
++Y+ ++FG E GL E LL C + IP Y LNL+ +V + YE
Sbjct: 103 VAYKGKIAIVFGRERIGLTNEELLKCHYH------LNIPANPDY-SSLNLAXAVQLVSYE 155
Query: 230 AARQLNYEQLKTASDTCIDREFP 252
+ K S + I++ +P
Sbjct: 156 LRXAFLVQNNKKNSLSLIEKNYP 178
>pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes
pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes
Length = 287
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTC-AASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
+ FL V+ P PGN G I R+ A A GL + G D ++ + +
Sbjct: 123 REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPA 182
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY-----LIFGSETSGLP 188
++V S E D+ + + GT H + D+ L+ G+ET+G
Sbjct: 183 VRVPSP-GEVXDWVEARRAAGTPIVLV--GTDEHGDCDVFDFDFTQPTLLLIGNETAG-- 237
Query: 189 PEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
L T T+ IP + + + I +YEA RQ
Sbjct: 238 ----LSNAWRTLCDYTVSIPXAGSASSLNAANAATAI-LYEAVRQ 277
>pdb|1ZTV|A Chain A, Crystal Structure Of A Duf72 Family Protein (Ef0366) From
Enterococcus Faecalis V583 At 3.10 A Resolution
pdb|1ZTV|B Chain B, Crystal Structure Of A Duf72 Family Protein (Ef0366) From
Enterococcus Faecalis V583 At 3.10 A Resolution
Length = 289
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 56 RENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGN 91
R N + P V + + + +N+F V++ PQIP N
Sbjct: 152 RNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTN 187
>pdb|1VPY|A Chain A, Crystal Structure Of A Duf72 Family Protein (ef0366) From
Enterococcus Faecalis V583 At 2.52 A Resolution
Length = 289
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 56 RENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGN 91
R N + P V + + +N+F V++ PQIP N
Sbjct: 152 RNNSWYQPNFVKQXLQFXKENQFSLVIVDEPQIPTN 187
>pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 104 CGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRG 163
GL L+ G++VD +RAG + K+ + F Q +G A+ ++G
Sbjct: 6 AGLELLSDQGYRVDG---RRAG------ELRKIQARMG----VFAQADGS----AYIEQG 48
Query: 164 TSTHSEISYRKGDYLIFGSETSGLPPEALLDC--TSETFGGG 203
+ + Y G + I GS LP AL++C +S TF G
Sbjct: 49 NTKALAVVY--GPHEIRGSRARALPDRALVNCQYSSATFSTG 88
>pdb|1ZRT|C Chain C, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|P Chain P, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 437
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 67 GEAVNGLSQNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVG---PLGFQVDDTK--- 120
G AV+ + N+F + + P + IA A H G P G +V T
Sbjct: 183 GPAVDNATLNRFFSLHYLLPFV------IAALVAIHIWAFHTTGNNNPTGVEVRRTSKAD 236
Query: 121 LKRAGLDYWPYVVIK 135
++ L +WPY VIK
Sbjct: 237 AEKDTLPFWPYFVIK 251
>pdb|2CIG|A Chain A, Dihydrofolate Reductase From Mycobacterium Tuberculosis
Inhibited By The Acyclic 4r Isomer Of Inh-Nadp A
Derivative Of The Prodrug Isoniazid
Length = 159
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 173 RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGI 225
R+ D++ G+E G EAL + GGG + + RC V +G+
Sbjct: 67 RQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGL 119
>pdb|1DF7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Methotrexate
pdb|1DG5|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Trimethoprim
pdb|1DG7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And 4-Bromo Wr99210
pdb|1DG8|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph
Length = 159
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 173 RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGI 225
R+ D++ G+E G EAL + GGG + + RC V +G+
Sbjct: 67 RQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGL 119
>pdb|4F6B|A Chain A, Aquomet Structure Of His100phe Cerebratulus Lacteus
Mini-Hemoglobin
pdb|4F6D|A Chain A, Oxy Structure Of His100phe Cerebratulus Lacteus
Mini-Hemoglobin
pdb|4F6F|A Chain A, Carbonmonoxy Structure Of His100phe Cerebratulus Lacteus
Mini- Hemoglobin
Length = 110
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 96 ARTCAASACGLHLVGPLGFQVDD 118
A+ C A AC H LGF +DD
Sbjct: 83 AKACLAKACSAHGAPDLGFAIDD 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,565,452
Number of Sequences: 62578
Number of extensions: 299434
Number of successful extensions: 473
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 23
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)