BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024933
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74516|TRML_SYNY3 Putative tRNA (cytidine(34)-2'-O)-methyltransferase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0992 PE=3 SV=1
Length = 153
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+++VLV+PQIP NTG IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H
Sbjct: 1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++ EF ++R Q G LL F+ GT + +Y+ D+L+ GSET GL P+ + D ++
Sbjct: 61 NSCEEFITHWRGQGGN--LLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLST 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
+ + IPM + VR LNL+ S IA++EA RQL
Sbjct: 118 Q-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149
>sp|Q21LN7|TRML_SACD2 tRNA (cytidine(34)-2'-O)-methyltransferase OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=trmL
PE=3 SV=2
Length = 154
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + C LHL+ PLGF++DD +L+RAGLDY + + H
Sbjct: 1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ W D F +Q+ +RL A + +GT H E+S +GDYL+FG ET GLP E L T
Sbjct: 61 ANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEILEYITF 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ +RIPM+ R +NLS + + VYEA RQL +
Sbjct: 117 DN----VLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 150
>sp|Q74Y93|TRML_YERPE tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yersinia pestis
GN=trmL PE=1 SV=1
Length = 162
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + C LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60
Query: 138 STWAEFRDYFRQQEGE-KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F D + + RL A T +GT HS +SY+ DYL+FG ET GLP L
Sbjct: 61 HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
++ IRIPM + R +NLS +V + VYEA RQL Y
Sbjct: 121 AQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155
>sp|P44868|TRML_HAEIN tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=trmL PE=1 SV=1
Length = 160
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 9/160 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+R+GLDY + IK H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
T+ + F + E KRL A T +G HS++ ++ GDYL+FG ET G+P L +
Sbjct: 61 KTF----EAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPM 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E IRIPM R +NLS SV + VYEA RQL Y+
Sbjct: 117 EQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
>sp|P0AGJ7|TRML_ECOLI tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli
(strain K12) GN=trmL PE=1 SV=1
Length = 157
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>sp|P0AGJ8|TRML_ECOL6 tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=trmL PE=3
SV=1
Length = 157
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LH++ P+GF DD +L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
+ F + E +RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYRA----FLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E IRIPMV R +NLS +V + VYEA RQL Y
Sbjct: 117 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
>sp|O31590|TRML_BACSU Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus
subtilis (strain 168) GN=cspR PE=3 SV=2
Length = 160
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V + H
Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD---YLIFGSETSGLPPEALLDC 195
+ E + +++ + TK G H+ Y D + +FG ETSGLP + + +
Sbjct: 66 SLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNN 121
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+R+PM E +VR LNLS + I VYEA RQ NY LK
Sbjct: 122 MDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160
>sp|C7BSD3|TRML_PHOAA tRNA (cytidine(34)-2'-O)-methyltransferase OS=Photorhabdus
asymbiotica subsp. asymbiotica (strain ATCC 43949 /
3105-77) GN=trmL PE=3 SV=2
Length = 162
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF DD +L+RAGLDY + IK H
Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60
Query: 138 STWAEF-RDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
+ F + E RL A T +GT HS +SY+ GDYL+FG ET GLP L +
Sbjct: 61 HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMP 120
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
+ IRIPM+ R +NLS SV + V+EA RQL Y
Sbjct: 121 PQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 155
>sp|A0KAS4|TRML_BURCH tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia
cenocepacia (strain HI2424) GN=trmL PE=3 SV=2
Length = 156
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV+P+IP NTG + R CA + LHL+ PLGF +DD +++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP E L +
Sbjct: 61 RDWDAF--VAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
>sp|Q0BBL1|TRML_BURCM tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=trmL PE=3 SV=2
Length = 156
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
V+LV+P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FGSET GLP + L +
Sbjct: 61 RDWDAF--VAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPN 118
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
E +R+PM R LNLS +V + V+EA RQ +E
Sbjct: 119 EQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>sp|P32813|TRML_GEOSE Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus
stearothermophilus PE=3 SV=1
Length = 157
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 91/164 (55%), Gaps = 13/164 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L VVL P+IP NTG IARTCAA+ LHL+ PLGF DD L+RAGLDYW +V I +
Sbjct: 3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYD 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDC 195
+ D+F QQ TK G ++ + K + IFG ET+GLP E L +
Sbjct: 63 SL----DHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAEN 118
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+RIPM E VR LNLS + I VYEA RQ ++ L
Sbjct: 119 EDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156
>sp|A3NR15|TRML_BURP0 tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia
pseudomallei (strain 1106a) GN=trmL PE=3 SV=2
Length = 156
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
VVLV P+IP NTG + R CA + LHL+ PLGF +DD K++RAGLDY Y ++VH
Sbjct: 1 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + R+ AFT RG+ + ++ GD+ +FG+ET GL P AL+D +
Sbjct: 61 RDWDAF--VAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAP-ALVDRFA 117
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+R+PM R LNLS +V + V+EA RQ +E
Sbjct: 118 PE---QRVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
>sp|Q721N0|TRML_LISMF Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Listeria
monocytogenes serotype 4b (strain F2365)
GN=LMOf2365_0956 PE=3 SV=1
Length = 169
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 13/163 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I+RTCA + LHL+ PLGF DD LKRAGLDYW V + + +
Sbjct: 4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
EF F + EG TK G +S+I Y K + +FG ET+GL P+ALL
Sbjct: 64 LDEF---FEKNEG-GEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGL-PDALLQKN 118
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM + ++R LNLS + I YEA RQ N+ L
Sbjct: 119 EEN----CLRIPMTD-HIRSLNLSNTAAILAYEALRQQNFGAL 156
>sp|Q48V41|TRML_STRPM Putative tRNA (cytidine(34)-2'-O)-methyltransferase
OS=Streptococcus pyogenes serotype M28 (strain MGAS6180)
GN=M28_Spy0301 PE=3 SV=2
Length = 182
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 12/163 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL PQIP NTG IARTCAA+ LH++ P+GF +DD K+KRAGLDYW + + +
Sbjct: 19 HIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLELHFYDH 78
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD--YLIFGSETSGLPPEALLDCTS 197
+F Q G+ L+ +K + +S+ +Y GD Y +FG E +GLP + + +
Sbjct: 79 LEQF---INQCHGQLHLI--SKFAVNNYSQATYADGDSHYFLFGREDTGLPEDFMREHAE 133
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
+ +RIPM + +VR LN+S +V + +YEA RQ ++ L+
Sbjct: 134 K-----ALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQGLE 171
>sp|C6X9I5|TRML_METSD tRNA (cytidine(34)-2'-O)-methyltransferase OS=Methylovorus sp.
(strain SIP3-4) GN=trmL PE=3 SV=2
Length = 154
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VL P+IP NTG I R CA + LHLV PLGF ++D +LKRAGLDY Y ++VH
Sbjct: 1 MFDIVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W +R+ A T +G++ HS I++++GD +FG ET GLP E T
Sbjct: 61 ENWEACCAAL----AGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTP 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +R+PM+ R LNLS S + +YEA RQ ++
Sbjct: 117 EH----RVRLPMMPNN-RSLNLSNSAAVLLYEAWRQHDF 150
>sp|B8CHC9|TRML_SHEPW tRNA (cytidine(34)-2'-O)-methyltransferase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=trmL PE=3 SV=2
Length = 153
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+ L P+I NTG I R A + C LHL+ PLGF ++D KL+RAGLDY + H
Sbjct: 1 MFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
F + + +G KR++A T +G+ HSE+++++ D L+FG E+ GLP + + +
Sbjct: 61 KN---FESFLKAMQG-KRIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADIIDSIPT 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +RIPM+ T R LNLS +V I YEA RQL+Y
Sbjct: 117 EQ----RLRIPMMST-SRSLNLSNAVAIISYEAWRQLDY 150
>sp|A1WBM9|TRML_ACISJ tRNA (cytidine(34)-2'-O)-methyltransferase OS=Acidovorax sp.
(strain JS42) GN=trmL PE=3 SV=2
Length = 162
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 11/158 (6%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLGF ++D ++RAGLDY Y ++ H
Sbjct: 1 MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 60
Query: 138 STW-AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
W A RD Q R+ A T GT + + + GD+ +FG+E+ GLPPE
Sbjct: 61 PGWTALLRD---MQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPE-----L 112
Query: 197 SETFGGGT-IRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
ETF +R+PM+ R LNLS +V + VYEA RQ
Sbjct: 113 RETFPPAQRLRLPMLPNQ-RSLNLSNAVAVTVYEAWRQ 149
>sp|Q12E50|TRML_POLSJ tRNA (cytidine(34)-2'-O)-methyltransferase OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=trmL PE=3 SV=2
Length = 164
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 9/157 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
+VLV P+IP NTG + R A + C LHLV PLGF +DD ++RAGLDY Y + H
Sbjct: 1 MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRH 60
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
++W D R G RL A T G + ++ + GD+L+FG+ET GL P+
Sbjct: 61 ASWQALLDSQRPPAG--RLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPD-----VR 113
Query: 198 ETFG-GGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
E+F +R+PM + R LNLS +V + V+EA RQ
Sbjct: 114 ESFPMAQRLRVPM-QPGQRSLNLSNTVAVTVFEAWRQ 149
>sp|P69001|TRML_LISIN Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Listeria
innocua serovar 6a (strain CLIP 11262) GN=lin0934 PE=3
SV=1
Length = 169
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 13/163 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+VL P+IP NTG I+RTCA + LHL+ PLGF DD LKRAGLDYW V + + +
Sbjct: 4 HIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDS 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
EF F + G + TK G +S++ Y K + +FG ET+GLP E LL
Sbjct: 64 LDEF---FEKNAGGE-FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDE-LLQAN 118
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E +RIPM + ++R LNLS + + YEA RQ ++ L
Sbjct: 119 EEN----CLRIPMTD-HIRSLNLSNTAAVLAYEALRQQSFGAL 156
>sp|Q042B4|TRML_LACGA Putative RNA (cytidine(34)-2'-O)-methyltransferase OS=Lactobacillus
gasseri (strain ATCC 33323 / DSM 20243) GN=LGAS_1346
PE=3 SV=2
Length = 185
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
VVL P +P NTG IARTCA + L L+ PLGFQ+D+ K+KRAGLDYW V I++H
Sbjct: 4 HVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDD 63
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
F + + +K + ++++ Y K Y +FG ET+GLP +
Sbjct: 64 LDAF---LKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFM---- 116
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTA 242
+ +RIPM + +RC NLS SV + + EA RQ + ++T+
Sbjct: 117 -REYYDRNLRIPMSDN-IRCYNLSNSVAMVLLEALRQQGFPNMETS 160
>sp|A0KEQ6|TRML_AERHH tRNA (cytidine(34)-2'-O)-methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=trmL
PE=3 SV=2
Length = 156
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVH 137
L +VL P+IP NTG I R CA + LHL+ PLGF+ DD ++KRAGLDY + +K
Sbjct: 1 MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVK-- 58
Query: 138 STWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTS 197
W F + F + R+ A T +G + HS + + GD L+FG E+ GLP E +
Sbjct: 59 -RWPNF-EAFLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPF 116
Query: 198 ETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNY 236
E +RIPM+ R +NL+ +V + VYE+ RQL Y
Sbjct: 117 EQ----RLRIPMLPQ-SRSMNLANAVAVFVYESWRQLGY 150
>sp|A2RKW7|TRML_LACLM Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Lactococcus
lactis subsp. cremoris (strain MG1363) GN=llmg_1343 PE=3
SV=2
Length = 169
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 80 QVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHST 139
+ L P+I NTG IARTCAA+ LHL+ P GF++ D LKRAGLDYW V I H
Sbjct: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
Query: 140 WAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY---RKGDYLIFGSETSGLPPEALLDCT 196
+D+ +L +K +S++ Y +K Y +FG E +GLP E + +
Sbjct: 63 ---LQDFMNSIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHR 119
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLK 240
E IRIPM + +VR LNLS + VYEA +Q + L+
Sbjct: 120 DE-----CIRIPMNDEHVRSLNLSNCACMIVYEALKQQEFRGLE 158
>sp|P75257|TRML_MYCPN Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_521 PE=1
SV=1
Length = 166
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I R+C A LHL+ P GF ++D ++ RAGL+ W V + H
Sbjct: 6 INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHK 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY----RKGDYLIFGSETSGLPPEALLD 194
+W F K + TK GT+T +I+ R+ Y +FG ET GLP +
Sbjct: 66 SWEHF---IETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM-- 120
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
E + +RIP+ VR +NLS +V +YE A+Q +Y L
Sbjct: 121 ---EQYSQNQVRIPIWNP-VRSINLSNTVACVLYEYAKQNHYFNL 161
>sp|P47588|TRML_MYCGE Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG346 PE=3 SV=1
Length = 166
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
+ +VL P+IP NTG I R+C A LHL+ P GF ++D ++ RAGL+ W + + H
Sbjct: 6 INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHK 65
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKG----DYLIFGSETSGLPPEALLD 194
+W F + K + TK G T +I Y +FG ET GLP +
Sbjct: 66 SWEHF---LQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM-- 120
Query: 195 CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQL 239
+ F IRIP+ + VR +NL+ +V +YE ++Q Y L
Sbjct: 121 ---DNFKQNQIRIPIWNS-VRSINLANAVVCILYEYSKQNQYSNL 161
>sp|D7A3L6|TRML_STAND tRNA (cytidine(34)-2'-O)-methyltransferase OS=Starkeya novella
(strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /
NBRC 12443 / NCIB 9113) GN=trmL PE=3 SV=1
Length = 158
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHS 138
L + L P I N G +AR A LH+V P GF V D +RAG+DY VI+ H+
Sbjct: 3 LALALYEPDIAQNAGTLARAVACLGLELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRRHA 62
Query: 139 TWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSE 198
++ F ++ R+ EG +RL+ T RG H + ++ + D ++ G E++G+ PEA+ +
Sbjct: 63 SFKAFEEW-RRAEG-RRLVLATTRGAVAHVDFAFTETDVVLLGRESAGV-PEAVHESAD- 118
Query: 199 TFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IP+ E R LN++++ + + EA RQ
Sbjct: 119 ----ARIVIPLNEG-ARSLNVALAGAMILGEALRQ 148
>sp|B2IBT9|TRML_BEII9 tRNA (cytidine(34)-2'-O)-methyltransferase OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=trmL PE=3 SV=2
Length = 160
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 81 VVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTW 140
+ L P IP N G + R CA ++ P GF V D +RAG+DY V + H ++
Sbjct: 2 LALYQPDIPQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALSRHVSF 61
Query: 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETF 200
FR + Q E +RL+ + + + +++ ++R D L+ G E++G+ PEA + +++
Sbjct: 62 TAFRAW--QIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGV-PEA-VHASADAR 117
Query: 201 GGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235
+R PM R LN++V+ + + EA RQ+
Sbjct: 118 VVIPLRPPM-----RSLNVAVAAAMVLGEALRQVG 147
>sp|P52391|NHS_STRAS 23S rRNA methyltransferase OS=Streptomyces actuosus GN=nhs PE=1
SV=1
Length = 274
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 81 VVLVSPQIPGNTGCIART-CAASACGLHLVGPLGFQVDDTKLKRAGLDY---WPYVVIKV 136
VVL +I GN G I RT A A G+ LV + D +L RA Y P V+
Sbjct: 119 VVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADR 178
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY-LIFGSETSGLPPEALLDC 195
+ RD + L+ G ++ R L+FGSE G P L
Sbjct: 179 EEAVSFLRD------NDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGG--PSGLFQE 230
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
S GT+ IPM+ + LN+SVSVGIA++E
Sbjct: 231 AS----AGTVSIPMLSST-ESLNVSVSVGIALHE 259
>sp|P18644|TSNR_STRAJ rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces azureus
GN=tsnR PE=1 SV=1
Length = 269
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 81 VVLVSPQIPGNTGCIARTCAA-SACGLHLVGPLGFQVDDTKLKRAGLDY---WPYVVIKV 136
VVL +I GN G I RT A A G+ LV + D +L+RA Y P V+
Sbjct: 119 VVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGR 178
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGD-----YLIFGSETSGLPPEA 191
A RD Q L+ G + E+ GD L+FGSE G P
Sbjct: 179 EEAIAFIRDSGMQ------LMTLKADGDISVKEL----GDNPDRLALLFGSEKGG--PSD 226
Query: 192 LLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
L + S ++ IPM+ + LN+SVS+GIA++E
Sbjct: 227 LFEEASS----ASVSIPMM-SQTESLNVSVSLGIALHE 259
>sp|P0AGJ4|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri
GN=trmH PE=3 SV=1
Length = 229
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 14/157 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPL--GFQVDDTKLKRAGLDYWPYVVIKV 136
L V + P N I RT A A G+H V + G ++ AG + W V +K
Sbjct: 20 LTVCMEQVHKPHNVSAIIRT--ADAVGVHEVHAVWPGSRMRTMASAAAGSNSW--VQVKT 75
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
H T + + + Q G + L EI Y + ++ G E +G+ EAL
Sbjct: 76 HRTIGDAVAHLKGQ-GMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL---- 130
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM+ V+ LN+SV+ + +YEA RQ
Sbjct: 131 --ALADQDIIIPMI-GMVQSLNVSVASALILYEAQRQ 164
>sp|P0AGJ2|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
(strain K12) GN=trmH PE=1 SV=1
Length = 229
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 14/157 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPL--GFQVDDTKLKRAGLDYWPYVVIKV 136
L V + P N I RT A A G+H V + G ++ AG + W V +K
Sbjct: 20 LTVCMEQVHKPHNVSAIIRT--ADAVGVHEVHAVWPGSRMRTMASAAAGSNSW--VQVKT 75
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
H T + + + Q G + L EI Y + ++ G E +G+ EAL
Sbjct: 76 HRTIGDAVAHLKGQ-GMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL---- 130
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM+ V+ LN+SV+ + +YEA RQ
Sbjct: 131 --ALADQDIIIPMI-GMVQSLNVSVASALILYEAQRQ 164
>sp|P0AGJ3|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
O157:H7 GN=trmH PE=3 SV=1
Length = 229
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 14/157 (8%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLHLVGPL--GFQVDDTKLKRAGLDYWPYVVIKV 136
L V + P N I RT A A G+H V + G ++ AG + W V +K
Sbjct: 20 LTVCMEQVHKPHNVSAIIRT--ADAVGVHEVHAVWPGSRMRTMASAAAGSNSW--VQVKT 75
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCT 196
H T + + + Q G + L EI Y + ++ G E +G+ EAL
Sbjct: 76 HRTIGDAVAHLKGQ-GMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL---- 130
Query: 197 SETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM+ V+ LN+SV+ + +YEA RQ
Sbjct: 131 --ALADQDIIIPMI-GMVQSLNVSVASALILYEAQRQ 164
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1673 PE=3 SV=1
Length = 274
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASAC-GLHLVGPLGFQVDDT--KLKRAGLDYWPYVVIK 135
L +VL Q PGN G I RT AA+ G+ L VD T K+ R+ + +
Sbjct: 121 LGLVLERLQDPGNLGTILRTAAATGVEGIWLTADC---VDPTSPKVLRSSAGSSLLLPQQ 177
Query: 136 VHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDC 195
+ + F Q +L+A + T T EI +++ +IFGSE GL L
Sbjct: 178 QLQSLPPLLEKFHTQG--LQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELT 235
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
T + + IP V LN++++VG+ +YEA RQ
Sbjct: 236 THQ------VAIPQAP-QVESLNVAIAVGVMLYEARRQ 266
>sp|P52393|TSNR_STRLU rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces laurentii
GN=tsnR PE=3 SV=1
Length = 270
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 81 VVLVSPQIPGNTGCIART-CAASACGLHLVGPLGFQVDDTKLKRAGLDY---WPYVVIKV 136
V+L +I GN G I RT A A G+ LV + D +L RA Y P V+
Sbjct: 119 VLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRGYVFSLPIVLATR 178
Query: 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEIS-YRKGDYLIFGSETSGLPPEALLDC 195
A FRD G R + F G + E+ + L+FGSE +G P
Sbjct: 179 DEALAFFRD------GGMRPVVFEADGKLSIGELDGIDERLVLVFGSEKTG-PSGEFAGV 231
Query: 196 TSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+E+ + IPM LN+SVS GIA++ AR+
Sbjct: 232 ATES-----VSIPM-NPAAESLNVSVSAGIALHRRARR 263
>sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=trmH PE=1 SV=1
Length = 211
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 154 KRLLAFTKRGTS------THSEISYRKGDY-----LIFGSETSGLPPEALLDCTSETFGG 202
++LL F RG + +++R+ DY L+ G+E G+ PE +
Sbjct: 88 QKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIV------EIAD 141
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
I IPM + LN+SV+ GI +YEA RQ
Sbjct: 142 KKIVIPMY-GMAQSLNVSVATGIILYEAQRQ 171
>sp|Q13395|TARB1_HUMAN Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1
Length = 1621
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 23/163 (14%)
Query: 89 PGNTGCIARTCAASACGLHLVGPLGFQVDD--TKLKRAGLDYWPYVVIKVHSTWAEFRDY 146
P N G + RTC + +VG L D L + + P V +K + DY
Sbjct: 1474 PTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLVEVKP----PQLIDY 1529
Query: 147 FRQQEGEKRLLAFTKRGTST--HSEISYRKGDYLIFGSETSGLPPEAL--LDCTSETFGG 202
+Q++ E + ++ + ++ + + L+ G+E G+P + LD E
Sbjct: 1530 LQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQ 1589
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDT 245
G I R LN+ VS + ++E RQ QL + DT
Sbjct: 1590 GII---------RSLNVHVSGALLIWEYTRQ----QLLSHGDT 1619
>sp|A1L2E4|RML1B_DANRE RNA methyltransferase-like protein 1B OS=Danio rerio GN=rnmtl1b
PE=2 SV=2
Length = 445
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 178 LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
LI G ET GL EAL +E G + IPMV+ V LN +++ G+ ++E +QL
Sbjct: 384 LIIGGETHGLSREALQ--LAERTSGRRLLIPMVDG-VDSLNSAIAAGVLLFEGRKQL 437
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter
sp. (strain ADP1) GN=rlmB PE=3 SV=1
Length = 248
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 178 LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
++ G+E +GL P C T+ IPM ++ LN+SV+ G+A+YEA RQ
Sbjct: 197 IVMGAEDTGLRPITQSQCDQ------TVYIPM-SGNLQSLNVSVAAGMALYEACRQ 245
>sp|Q8Y016|RLMB_RALSO 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Ralstonia
solanacearum (strain GMI1000) GN=rlmB PE=3 SV=1
Length = 249
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 79 LQVVLVSPQIPGNTGCIARTCAASACGLH-LVGP----LGFQVDDTKLKRAGLDYWPYV- 132
L +VL P N G R A A G H ++ P +G K+ + PY+
Sbjct: 97 LLLVLDGVTDPHNLGACLRV--ADAAGAHAVIAPKDRSVGINTTVAKVASGAAETVPYIT 154
Query: 133 VIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY-----LIFGSETSGL 187
V + T E QQ G + GT+ +E + D+ L+ G+E G+
Sbjct: 155 VTNLARTLREL-----QQRGVWVI------GTADEAEQDLYRADFKGPIALVMGAEGEGM 203
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
L T +T + IPM + V LN+SV+ G+ ++EA RQ
Sbjct: 204 --RRLTRETCDTL----VSIPMAGS-VESLNVSVASGVCLFEAVRQ 242
>sp|Q7VTK4|RLMB_BORPE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=rlmB PE=3 SV=1
Length = 245
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 89 PGNTGCIARTCAASACGLH-LVGP----LGFQVDDTKLKRAGLDYWPYV-VIKVHSTWAE 142
P N G RT A A G+H ++ P +G ++ D PY+ V + T E
Sbjct: 107 PHNLGACLRT--ADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRE 164
Query: 143 FRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGG 202
+ E + L+ + + ++ R+ + G+E G+ C
Sbjct: 165 LK------ERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCDQ----- 213
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+RIPM+ + V LN+SV+ + +YE+ RQ
Sbjct: 214 -LVRIPMLGS-VESLNVSVASAVCLYESVRQ 242
>sp|Q7W7I7|RLMB_BORPA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=rlmB PE=3 SV=1
Length = 245
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 89 PGNTGCIARTCAASACGLH-LVGP----LGFQVDDTKLKRAGLDYWPYV-VIKVHSTWAE 142
P N G RT A A G+H ++ P +G ++ D PY+ V + T E
Sbjct: 107 PHNLGACLRT--ADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRE 164
Query: 143 FRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGG 202
+ E + L+ + + ++ R+ + G+E G+ C
Sbjct: 165 LK------ERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCDQ----- 213
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+RIPM+ + V LN+SV+ + +YE+ RQ
Sbjct: 214 -LVRIPMLGS-VESLNVSVASAVCLYESVRQ 242
>sp|Q7WKX5|RLMB_BORBR 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=rlmB PE=3 SV=1
Length = 245
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 89 PGNTGCIARTCAASACGLH-LVGP----LGFQVDDTKLKRAGLDYWPYV-VIKVHSTWAE 142
P N G RT A A G+H ++ P +G ++ D PY+ V + T E
Sbjct: 107 PHNLGACLRT--ADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRE 164
Query: 143 FRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGG 202
+ E + L+ + + ++ R+ + G+E G+ C
Sbjct: 165 LK------ERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCDQ----- 213
Query: 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
+RIPM+ + V LN+SV+ + +YE+ RQ
Sbjct: 214 -LVRIPMLGS-VESLNVSVASAVCLYESVRQ 242
>sp|Q9VW14|RMTL1_DROME RNA methyltransferase-like protein 1 homolog OS=Drosophila
melanogaster GN=CG14100 PE=2 SV=1
Length = 407
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 11/209 (5%)
Query: 39 LSSFSSFRFSP-ICSLPERENGGFMPRGVGEAVNGLSQNKFLQVVLVSPQIPGNTGCIAR 97
L ++SS P + ++ +R + + + + E SQ + VV + + P N G I R
Sbjct: 195 LKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPFPITVVCDNIREPNNLGSIIR 254
Query: 98 TCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKR-- 155
TCAA C +V ++K R G V I+ TW E + +
Sbjct: 255 TCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDDVTWDELALTIPPEAADDCHV 314
Query: 156 -LLAFTKRGTSTHSEISYR--KG----DYLIFGSETSGLPPEALLDCTSETFGGGTIRIP 208
+ +R + I Y KG + LI G E+ G+ EA G I IP
Sbjct: 315 FIAETNQRKRENNQTIDYADIKGLGAHNLLIIGGESHGVSEEAYRFLNLVGGKGKCIYIP 374
Query: 209 MVETYVRCLNLSVSVGIAVYEAARQLNYE 237
+ + LN++ ++ + ++E R+L ++
Sbjct: 375 LA-AGIDSLNVASALTLLLFELRRKLIHQ 402
>sp|Q9PC00|RLMB_XYLFA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain 9a5c) GN=rlmB PE=3 SV=1
Length = 249
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 62/166 (37%), Gaps = 27/166 (16%)
Query: 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLV---GPLGFQVDDTKLKRAGLDYWPYV- 132
+ L +VL Q P N G R+ AA+ ++ +G K D P +
Sbjct: 98 QALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIA 157
Query: 133 VIKVHSTWAEFRD-----YFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGL 187
V+ + + E + Y + E E L A RG L+ G E GL
Sbjct: 158 VVNLARSLRELQKQDVWIYGLEGEAETSLYALDLRGKVA-----------LVLGGEADGL 206
Query: 188 PPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
C RIPM V LN+SV+ G+ ++EA RQ
Sbjct: 207 RRLTREHCDV------LARIPM-PGEVESLNVSVAAGVTLFEAVRQ 245
>sp|Q566V3|RML1A_DANRE RNA methyltransferase-like protein 1A OS=Danio rerio GN=rnmtl1a
PE=2 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 178 LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234
L+ G ET GL EAL +E G + +PM V LN +++ GI ++E RQL
Sbjct: 366 LVIGGETHGLSVEALR--LAEETDGKRLFVPMAPG-VESLNSAMAAGILLFEGRRQL 419
>sp|Q87D65|RLMB_XYLFT 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rlmB PE=3
SV=1
Length = 249
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 31/168 (18%)
Query: 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLV---GPLGFQVDDTKLKRAGLDYWPYVV 133
+ L +VL Q P N G R+ AA+ ++ +G K D P V
Sbjct: 98 QALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLP--V 155
Query: 134 IKVHSTWAEFRDYFRQQ--------EGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETS 185
I V + R+ +Q E E L A RG L+ G E
Sbjct: 156 IAVVNLARSLRELQKQDVWIYGLAGEVETSLYALDLRGNVA-----------LVLGGEAD 204
Query: 186 GLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
GL C RIPM V LN+SV+ G+ ++EA RQ
Sbjct: 205 GLRRLTREHCDV------LARIPM-PGEVESLNVSVAAGVTLFEAVRQ 245
>sp|Q9F5K6|AVRB_STRVR 23S rRNA (uridine(2479)-2'-O)-methyltransferase OS=Streptomyces
viridochromogenes GN=aviRb PE=1 SV=1
Length = 287
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 16/165 (9%)
Query: 75 QNKFLQVVLVSPQIPGNTGCIARTC-AASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVV 133
+ FL V+ P PGN G I R+ A A GL + G D ++ + +
Sbjct: 123 REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPA 182
Query: 134 IKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDY-----LIFGSETSGLP 188
++V S E D+ + + GT H + D+ L+ G+ET+G
Sbjct: 183 VRVPSP-GEVMDWVEARRAAGTPIVLV--GTDEHGDCDVFDFDFTQPTLLLIGNETAG-- 237
Query: 189 PEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQ 233
L T T+ IPM + + + I +YEA RQ
Sbjct: 238 ----LSNAWRTLCDYTVSIPMAGSASSLNAANAATAI-LYEAVRQ 277
>sp|Q49V41|TRMHL_STAS1 Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP2224 PE=3 SV=1
Length = 249
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 163 GTSTHSEISYRKGDY-----LIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCL 217
GT + YR+ D ++ GSE G+ C I IPMV +V L
Sbjct: 173 GTEAENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDF------YINIPMV-GHVNSL 225
Query: 218 NLSVSVGIAVYEAARQLNY 236
N SV+ + +YE R+ NY
Sbjct: 226 NASVAASLMMYEVFRKRNY 244
>sp|Q7SFX6|LYS1_NEUCR Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=NCU03118 PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 153 EKRLLAFTKRGTSTHSEISYRKGDYLIFGS------------ETSGLPPEALLDC-TSET 199
E L+A K+ E + R ++ G+ + +G+P E +LD +ET
Sbjct: 169 EDALIADVKKAVKEGVEAAGRLPRVIVIGARGRCGSGAVSALKKAGIPDENILDWDMAET 228
Query: 200 FGGGTIR-IPMVETYVRCLNLSVSVGIAVYEAARQLNYEQLKTASDTCIDREFPFITEDI 258
GG + I + +V C+ L+ + V + Q+ QL+ D D PF I
Sbjct: 229 AKGGPFKEITDSDIFVNCIYLTSKIPNFVNMESLQVPDRQLRVVCDVSADTTSPFTPVPI 288
Query: 259 F 259
+
Sbjct: 289 Y 289
>sp|Q8PM64|RLMB_XANAC 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rlmB PE=3 SV=1
Length = 249
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 170 ISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
+ R L+ G E GL C G ++IPM + LN+SV+ G+ ++E
Sbjct: 189 VDLRGNVGLVLGGEADGLRRLTREHCD------GLVKIPM-PGEIESLNVSVATGVTLFE 241
Query: 230 AARQ 233
A RQ
Sbjct: 242 AVRQ 245
>sp|P44676|Y380_HAEIN Uncharacterized tRNA/rRNA methyltransferase HI_0380 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0380 PE=1 SV=2
Length = 241
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 170 ISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYE 229
++Y+ ++FG E GL E LL C + IP Y LNL+++V + YE
Sbjct: 100 VAYKGKIAIVFGRERIGLTNEELLKCHYH------LNIPANPDY-SSLNLAMAVQLVSYE 152
Query: 230 AARQLNYEQLKTASDTCIDREFP 252
+ K S + I++ +P
Sbjct: 153 LRMAFLVQNNKKNSLSLIEKNYP 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,933,713
Number of Sequences: 539616
Number of extensions: 4308780
Number of successful extensions: 8076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 7991
Number of HSP's gapped (non-prelim): 52
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)