Query 024933
Match_columns 260
No_of_seqs 242 out of 1199
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gz0_A Hypothetical tRNA/RRNA 100.0 2E-45 6.9E-50 329.3 14.1 213 13-234 19-252 (253)
2 2i6d_A RNA methyltransferase, 100.0 1.1E-44 3.7E-49 325.3 18.4 210 13-234 34-257 (257)
3 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 8.7E-45 3E-49 328.7 16.8 217 13-241 35-268 (274)
4 3nk6_A 23S rRNA methyltransfer 100.0 1.6E-44 5.4E-49 327.5 14.2 211 13-235 41-268 (277)
5 1x7o_A Avirb, rRNA methyltrans 100.0 4.2E-44 1.4E-48 326.2 16.7 213 13-235 47-279 (287)
6 3n4j_A RNA methyltransferase; 100.0 1.1E-43 3.6E-48 299.4 12.4 156 77-241 3-163 (165)
7 3e5y_A TRMH family RNA methylt 100.0 1.2E-43 4E-48 297.7 10.9 153 77-238 4-158 (160)
8 3l8u_A SMU.1707C, putative rRN 100.0 1.5E-41 5.1E-46 290.8 13.7 154 75-240 14-171 (182)
9 2ha8_A TAR (HIV-1) RNA loop bi 100.0 2.9E-40 1E-44 282.8 11.6 158 75-243 23-184 (184)
10 1v2x_A TRNA (GM18) methyltrans 100.0 1.2E-39 4.1E-44 281.2 10.3 151 76-237 20-171 (194)
11 1zjr_A TRNA (guanosine-2'-O-)- 100.0 4.7E-38 1.6E-42 274.7 13.0 151 77-237 24-175 (211)
12 3kty_A Probable methyltransfer 100.0 3.9E-37 1.3E-41 260.7 9.4 145 77-234 9-172 (173)
13 3onp_A TRNA/RRNA methyltransfe 100.0 1.6E-32 5.3E-37 245.3 10.7 142 78-236 4-164 (249)
14 3ilk_A Uncharacterized tRNA/RR 100.0 8.7E-33 3E-37 246.3 8.8 141 78-235 7-161 (244)
15 3ic6_A Putative methylase fami 100.0 2.2E-32 7.6E-37 240.4 8.7 146 77-235 16-195 (223)
16 3dcm_X AdoMet, uncharacterized 99.7 2.3E-17 7.7E-22 141.7 8.3 143 78-232 4-185 (192)
17 2yy8_A ATRM56, UPF0106 protein 94.9 0.073 2.5E-06 45.0 7.3 112 95-232 21-147 (201)
18 2o3a_A UPF0106 protein AF_0751 94.4 0.16 5.5E-06 42.2 8.2 109 95-231 24-143 (178)
19 2qmm_A UPF0217 protein AF_1056 91.4 0.96 3.3E-05 38.4 8.9 81 137-233 111-195 (197)
20 2qwv_A UPF0217 protein VC_A105 88.9 1.8 6.1E-05 37.1 8.5 85 137-233 120-204 (208)
21 4e8b_A Ribosomal RNA small sub 88.4 12 0.0004 32.4 14.1 112 79-197 79-209 (251)
22 3aia_A UPF0217 protein MJ1640; 84.5 5.7 0.0002 34.0 9.3 81 137-233 122-206 (211)
23 3kw2_A Probable R-RNA methyltr 75.8 34 0.0012 29.7 11.6 115 78-197 78-213 (257)
24 1vhy_A Hypothetical protein HI 60.3 83 0.0028 27.1 11.8 111 80-197 82-212 (257)
25 1vhk_A Hypothetical protein YQ 58.8 90 0.0031 27.0 15.5 113 80-197 83-221 (268)
26 4fak_A Ribosomal RNA large sub 53.0 16 0.00056 29.8 4.6 48 153-207 74-131 (163)
27 1to0_A Hypothetical UPF0247 pr 36.0 25 0.00084 28.8 3.1 68 153-233 70-148 (167)
28 1o6d_A Hypothetical UPF0247 pr 32.6 27 0.00094 28.4 2.8 68 153-233 65-142 (163)
29 3j1r_A Archaeal adhesion filam 32.3 33 0.0011 19.4 2.2 13 219-231 13-25 (26)
30 1ns5_A Hypothetical protein YB 30.6 27 0.00091 28.2 2.4 46 155-207 68-122 (155)
No 1
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=2e-45 Score=329.30 Aligned_cols=213 Identities=18% Similarity=0.184 Sum_probs=178.5
Q ss_pred hhHHHHhhhcCCcceeeecCccccc-cCCCCc---CCC--cccCCC--ccccccCCCCCceEEEEEecCCC---------
Q 024933 13 VPLHAHFRSRAPNFTQFKNNFSFSS-PLSSFS---SFR--FSPICS--LPERENGGFMPRGVGEAVNGLSQ--------- 75 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~--~~~~~~--~~~~~~~~~~~qGv~a~~~~~~~--------- 75 (260)
+++.++++++.+.+..+++..+... .+..+. ..+ .+..++ .++.++++.+||||+|+++.+..
T Consensus 19 ~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~l~~~ 98 (253)
T 1gz0_A 19 HAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDL 98 (253)
T ss_dssp HHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCCGGGHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCcHHHHHHH
Confidence 8999999988655677777543211 111110 011 111122 23558889999999999987531
Q ss_pred ----CccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhc
Q 024933 76 ----NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQE 151 (260)
Q Consensus 76 ----~~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~ 151 (260)
+.+++||||+|+||+|+|+|+|||++||++.+++.+.+++++++++.|+++|+++++++..+.++.++++++++.
T Consensus 99 ~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~l~~~- 177 (253)
T 1gz0_A 99 IASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEE- 177 (253)
T ss_dssp HHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHT-
T ss_pred HhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEEEeCCHHHHHHHHHHC-
Confidence 246899999999999999999999999999999988888899999999999999888888889999999999976
Q ss_pred CCcEEEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHH
Q 024933 152 GEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAA 231 (260)
Q Consensus 152 ~g~~iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~ 231 (260)
|++++|++.++..++++++++++++||||||++|||+++++.||. .|+|||.| .++|||||+|+||+|||++
T Consensus 178 -g~~i~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~------~v~IPm~g-~~~SLNvsvAaaI~lye~~ 249 (253)
T 1gz0_A 178 -NIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDE------LISIPMAG-SVSSLNVSVATGICLFEAV 249 (253)
T ss_dssp -TCEEEEECTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSE------EEECCCSS-SSCCCCHHHHHHHHHHHHH
T ss_pred -CCEEEEEECCCCcchhhccCCCCEEEEECCCCcCcCHHHHHhCCE------EEEECCCC-CCCceeHHHHHHHHHHHHH
Confidence 899999998888889999999999999999999999999999999 99999999 5999999999999999999
Q ss_pred Hcc
Q 024933 232 RQL 234 (260)
Q Consensus 232 rq~ 234 (260)
||+
T Consensus 250 rq~ 252 (253)
T 1gz0_A 250 RQR 252 (253)
T ss_dssp HHT
T ss_pred Hhh
Confidence 986
No 2
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.1e-44 Score=325.27 Aligned_cols=210 Identities=19% Similarity=0.143 Sum_probs=174.7
Q ss_pred hhHHHHhhhcCCcceeeecCccccccCCCCcCCCcccCC---CccccccCCCCCceEEEEEecCCCC----ccEEEEEeC
Q 024933 13 VPLHAHFRSRAPNFTQFKNNFSFSSPLSSFSSFRFSPIC---SLPERENGGFMPRGVGEAVNGLSQN----KFLQVVLVS 85 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~qGv~a~~~~~~~~----~~l~vvLd~ 85 (260)
+++.++|++ ..+..+++......++.. .....+..+ +.++.++++.+||||+|+++.+... .+++||||+
T Consensus 34 ~~v~eal~~--~~i~~l~~~~~~~~~l~~-~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~~~l~~~~~~~lvLd~ 110 (257)
T 2i6d_A 34 KLVGEMLPF--YRCRMLVGTAAMLRAVST-PHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPVVEGLTLLLDG 110 (257)
T ss_dssp HHHHHHGGG--SCEEEEEEEHHHHHTSCC-CTTCEEEEECTTCCGGGTCCSSSCCSEEEEEECCCCCCCCCCSEEEEEES
T ss_pred HHHHHHHhc--CCcCEEEEEcCchHHHHH-hcCCCEEEeChHHHHHHHhcCCCCCeEEEEEECCCCChHHhCCeEEEEEC
Confidence 889999988 445666665432222221 111111122 3356688999999999999876421 368999999
Q ss_pred CCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcEEEEEEcCCCc
Q 024933 86 PQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTS 165 (260)
Q Consensus 86 i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~iva~~~~~~~ 165 (260)
|+||+|+|+|+|||++||++.+++.+.+++++++++.|+++|+++++++..+.+++++++.+++. |++++|++.++..
T Consensus 111 v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~~l~~~--g~~i~~~~~~~~~ 188 (257)
T 2i6d_A 111 VQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQ--GIPVYGAFLDGQS 188 (257)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHHHHHHT--TCCEEEEEEEEEE
T ss_pred CCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCCHHHheecCCcceeeeEEEeCCHHHHHHHHHHC--CCEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999987569999999999986 8999999988777
Q ss_pred Ccccc--cCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCC-----CCCCccccHHHHHHHHHHHHHHcc
Q 024933 166 THSEI--SYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMV-----ETYVRCLNLSVSVGIAVYEAARQL 234 (260)
Q Consensus 166 ~l~~~--~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~-----g~~v~SLNVsvAaaI~Lyel~rq~ 234 (260)
+++++ +++++++||||||++|||+++++.||. .|+|||. | .++|||||+|+||+|||++||+
T Consensus 189 ~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~------~v~IPm~~~~~~g-~~~SLNvsvAaaI~lye~~rq~ 257 (257)
T 2i6d_A 189 LYEAPLPNFTEPAILVLGSEGRGISPEVAAEITD------RLTIPASGLSVKG-HTESLNVAIATAILCSEWRRRS 257 (257)
T ss_dssp TTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSE------EEECCCCSSCC-----CCCCHHHHHHHHHHHHHHTC
T ss_pred cHHHhhhCcCCCEEEEECCCCCCCCHHHHHhCCe------EEEECCCcCCCCC-CCCChhHHHHHHHHHHHHHhcC
Confidence 88888 899999999999999999999999999 9999998 8 5999999999999999999985
No 3
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=8.7e-45 Score=328.68 Aligned_cols=217 Identities=20% Similarity=0.151 Sum_probs=177.3
Q ss_pred hhHHHHhhhcCCcceeeecCccccc----cCCCCcCCCc-cc--CCC--ccccccCCCCCceEEEEEecCCC--------
Q 024933 13 VPLHAHFRSRAPNFTQFKNNFSFSS----PLSSFSSFRF-SP--ICS--LPERENGGFMPRGVGEAVNGLSQ-------- 75 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~-~~--~~~--~~~~~~~~~~~qGv~a~~~~~~~-------- 75 (260)
+++.++++++. .+..+++..+... ++......+- ++ .++ .++.++++.+||||+|+++.+..
T Consensus 35 ~~v~eal~~~~-~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~l~~~~~~ 113 (274)
T 1ipa_A 35 REIERALQAGI-ELEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPS 113 (274)
T ss_dssp HHHHHHHHTTC-CEEEEEEETTCCCHHHHHHHHCC-----CEEEEECHHHHHHHCCSSSCCSEEEEEECCCCCCCCCCCC
T ss_pred HHHHHHHhCCC-CeEEEEEEcCcccchHHHHHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeEEEEEeCCCCCHHHHhcc
Confidence 89999999876 4666666543211 1111111111 11 222 23558899999999999987531
Q ss_pred CccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcE
Q 024933 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKR 155 (260)
Q Consensus 76 ~~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~ 155 (260)
+.+++||||+|+||+|+|+|+|||++||++.+++.+. ++++++++.|+++|+++++++.. .++++++++++++ |++
T Consensus 114 ~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~v~ras~Ga~~~l~~~~-~~l~~~l~~l~~~--g~~ 189 (274)
T 1ipa_A 114 PDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA-ASESEVLDWIKQH--NLP 189 (274)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE-ECHHHHHHHHHHT--TCC
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cCcCCHHHHHHcCChhhcceeEe-CCHHHHHHHHHHc--CCE
Confidence 2458999999999999999999999999999999888 89999999999999999888877 8999999999986 899
Q ss_pred EEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHHccc
Q 024933 156 LLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235 (260)
Q Consensus 156 iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~rq~~ 235 (260)
++|++.++..++++++++++++||||||++|||+++++.||. .|+|||.| .++|||||+|+||+|||++||++
T Consensus 190 i~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~------~v~IPm~g-~~~SLNvsvAaaI~lye~~rq~~ 262 (274)
T 1ipa_A 190 LVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQT------QVRIPMQG-QADSLNVSVSAALLLYEALRQRL 262 (274)
T ss_dssp EEEECTTCSSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSE------EEBCCCCS-SCCCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcchhhcCCCCCEEEEECCCCcCCCHHHHHhCCe------EEEECCCC-CCCceeHHHHHHHHHHHHHHhcc
Confidence 999999888889999999999999999999999999999999 99999999 59999999999999999999988
Q ss_pred cccCCC
Q 024933 236 YEQLKT 241 (260)
Q Consensus 236 ~~~~~~ 241 (260)
.++.-.
T Consensus 263 ~~~~~~ 268 (274)
T 1ipa_A 263 LRDRLT 268 (274)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 765543
No 4
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=1.6e-44 Score=327.50 Aligned_cols=211 Identities=22% Similarity=0.176 Sum_probs=172.5
Q ss_pred hhHHHHhhhcCCcceeeecCcccccc--CCCC-c-CCCcccCCC--ccccccCCCCCceEEEEEecC-CC--------Cc
Q 024933 13 VPLHAHFRSRAPNFTQFKNNFSFSSP--LSSF-S-SFRFSPICS--LPERENGGFMPRGVGEAVNGL-SQ--------NK 77 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~-~-~~~~~~~~~--~~~~~~~~~~~qGv~a~~~~~-~~--------~~ 77 (260)
+++.++|+++.. +..+++..+.... +... . ....+..++ ..+.++++.+||||+|+++.+ .. +.
T Consensus 41 ~~V~eaL~~~~~-i~~l~~~~~~~~~~~l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~~~~~~~~ 119 (277)
T 3nk6_A 41 EPLMECIRAGVQ-FIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGG 119 (277)
T ss_dssp HHHHHHHHTTCC-EEEEEEETTSCCCHHHHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCCCHHHHHHHCS
T ss_pred HHHHHHHhCCCC-eEEEEEeCCccCcHHHHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCCHHHHhccCC
Confidence 889999998864 5556665433221 1000 0 011111222 245588889999999999877 21 24
Q ss_pred cEEEEEeCCCCCCcHHHHHHhhhhcccceEEECC-CCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcEE
Q 024933 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGP-LGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRL 156 (260)
Q Consensus 78 ~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~-~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~i 156 (260)
+ +||||+|+||+|+|+|+|||++||++.+++.+ ++++++++++.|+++|+++++++..+ ++.++++.+++. |+++
T Consensus 120 ~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l~~lk~~--g~~v 195 (277)
T 3nk6_A 120 D-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAVSFLRDN--DIAL 195 (277)
T ss_dssp C-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHHHHHHHT--TCCE
T ss_pred C-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHHHHHHhc--CCeE
Confidence 5 99999999999999999999999999999988 88999999999999999999999888 999999999986 8999
Q ss_pred EEEEcCCCcCccc-ccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHHccc
Q 024933 157 LAFTKRGTSTHSE-ISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235 (260)
Q Consensus 157 va~~~~~~~~l~~-~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~rq~~ 235 (260)
+|++.++..++++ ++++++++||||||++|||+++++.||. .|+|||.| .++|||||+|+||+|||+.||+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~------~v~IPm~g-~~~SLNvsvAaaI~lye~~rq~~ 268 (277)
T 3nk6_A 196 MVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAG------TVSIPMLS-STESLNVSVSVGIALHERSARNF 268 (277)
T ss_dssp EEECTTCSEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSC------EEECCCSS-TTCCCCHHHHHHHHHHHTHHHHH
T ss_pred EEEecCCCcchhhhhccCCCEEEEECCCCCCCCHHHHHhCCe------EEEECCCC-CCCCchHHHHHHHHHHHHHHhhh
Confidence 9999998888999 9999999999999999999999999999 99999999 59999999999999999999974
No 5
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=4.2e-44 Score=326.16 Aligned_cols=213 Identities=21% Similarity=0.192 Sum_probs=177.9
Q ss_pred hhHHHHhhhcCCcceeeecCcccccc--CCCCc--CCCcccCCC--ccccccCCC-CCceEEEEEecCCC-------C-c
Q 024933 13 VPLHAHFRSRAPNFTQFKNNFSFSSP--LSSFS--SFRFSPICS--LPERENGGF-MPRGVGEAVNGLSQ-------N-K 77 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~--~~~~~~~~~--~~~~~~~~~-~~qGv~a~~~~~~~-------~-~ 77 (260)
+++.++|+++ ..+..+++..+.... +..+. .+..+..++ .++.++++. +||||+|+++.+.. . .
T Consensus 47 ~~V~eal~~~-~~i~~l~~~~~~~~~~~~~~l~~~~~~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~~~l~~~~~~~~ 125 (287)
T 1x7o_A 47 RPISLAVEHG-WPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVRED 125 (287)
T ss_dssp HHHHHHHHTT-CCEEEEEEESSCCCCHHHHHHHHHSCSEEEEECHHHHTTSSCSSSCCCSEEEEEECCCCCGGGSCCCTT
T ss_pred HHHHHHHhCC-CCeEEEEEecCcccchhHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCCcEEEEEecCCCCHHHHhcccC
Confidence 8899999987 445566665432110 11110 010111122 235588888 99999999987631 2 5
Q ss_pred cEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHH---hhhcCCc
Q 024933 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYF---RQQEGEK 154 (260)
Q Consensus 78 ~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~l---k~~~~g~ 154 (260)
+++||||+|+||+|+|+|+|||++||++.+++.+.+++++++++.|+++|+++++++..+.+++++++++ ++. |+
T Consensus 126 ~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l~~l~~~~~~--g~ 203 (287)
T 1x7o_A 126 FLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAA--GT 203 (287)
T ss_dssp CEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHH--TC
T ss_pred CEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHHHHHHHHHhc--CC
Confidence 7899999999999999999999999999999998889999999999999999999988889999999999 876 89
Q ss_pred E--EEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHH
Q 024933 155 R--LLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAAR 232 (260)
Q Consensus 155 ~--iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~r 232 (260)
+ ++|++.++..++++++++++++||||||++|||+++++.||. .|+|||.| .++|||||+|+||+|||++|
T Consensus 204 ~~~i~~~~~~~~~~~~~~~~~~~~alV~GnE~~Gls~~~~~~~d~------~v~IPm~g-~~~SLNvavAaaI~lye~~r 276 (287)
T 1x7o_A 204 PIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDY------TVSIPMAG-SASSLNAANAATAILYEAVR 276 (287)
T ss_dssp CCEEEEECTTCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSE------EEECCCSS-SSCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCccHhhcCCCCCEEEEECCCCCCCCHHHHHhCCe------EEEECCCC-CCCceEHHHHHHHHHHHHHH
Confidence 9 999999888889999999999999999999999999999999 99999999 59999999999999999999
Q ss_pred ccc
Q 024933 233 QLN 235 (260)
Q Consensus 233 q~~ 235 (260)
|+.
T Consensus 277 q~~ 279 (287)
T 1x7o_A 277 QRI 279 (287)
T ss_dssp HHS
T ss_pred hcc
Confidence 986
No 6
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=1.1e-43 Score=299.44 Aligned_cols=156 Identities=48% Similarity=0.786 Sum_probs=146.2
Q ss_pred ccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhh---hcCC
Q 024933 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQ---QEGE 153 (260)
Q Consensus 77 ~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~---~~~g 153 (260)
++++||||+|+||+|+|+|+|||++||++.+++.+.++++++++++|+|+++|+++++..+.+++++++++|+ + |
T Consensus 3 ~~~~vvL~~~~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~--g 80 (165)
T 3n4j_A 3 AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQ--P 80 (165)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSS--C
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCeEEEECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccC--C
Confidence 4689999999999999999999999999999999988999999999999999888888888999999999986 4 8
Q ss_pred cEEEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHHHHhh--CcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHH
Q 024933 154 KRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD--CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAA 231 (260)
Q Consensus 154 ~~iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~--cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~ 231 (260)
+++++++.++..+++++++++|++||||||++|||+++++. ||. +|+|||.| .++|||||+|+||+|||++
T Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~------~v~IPm~g-~~~SLNvavAaaI~lye~~ 153 (165)
T 3n4j_A 81 ARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQ------KIRIPMQA-DSRSMNLSNAVSVVVYEAW 153 (165)
T ss_dssp TTEEEECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGG------EEBCCCCT-TCCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCe------EEEECCCC-CCceeeHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999 898 99999999 5999999999999999999
Q ss_pred HccccccCCC
Q 024933 232 RQLNYEQLKT 241 (260)
Q Consensus 232 rq~~~~~~~~ 241 (260)
||+++++..+
T Consensus 154 rq~~~~~~~~ 163 (165)
T 3n4j_A 154 RQLGYPGALL 163 (165)
T ss_dssp HHHTCTTCCC
T ss_pred Hhcccccccc
Confidence 9999876553
No 7
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=1.2e-43 Score=297.73 Aligned_cols=153 Identities=42% Similarity=0.764 Sum_probs=144.0
Q ss_pred ccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcEE
Q 024933 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRL 156 (260)
Q Consensus 77 ~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~i 156 (260)
++++||||+|+||+|+|+|+|||++||++.+++.+.++++++++++|+|+++|+++++..++++++++++++++ |+++
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~--g~~i 81 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPD--PARM 81 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCC--GGGE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEEEECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhC--CCEE
Confidence 45899999999999999999999999999999999889999999999999998888888889999999999875 8999
Q ss_pred EEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHHHHhh--CcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHHcc
Q 024933 157 LAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLD--CTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234 (260)
Q Consensus 157 va~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~--cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~rq~ 234 (260)
++++.++..+++++++++|++||||||++|||+++++. ||. .|+|||.| .++|||||+|++|+|||++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~------~v~IPm~g-~~~SLNvsvAaaI~lye~~rq~ 154 (160)
T 3e5y_A 82 FAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ------RVRLPMRP-GNRSLNLSNTVAVVVFEAWRQA 154 (160)
T ss_dssp EEECSTTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGG------EEECCCCS-SSCCCCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCe------EEEEcCCC-CCCeehHHHHHHHHHHHHHHhc
Confidence 99999888889999999999999999999999999999 999 99999999 5999999999999999999999
Q ss_pred cccc
Q 024933 235 NYEQ 238 (260)
Q Consensus 235 ~~~~ 238 (260)
++++
T Consensus 155 ~~~~ 158 (160)
T 3e5y_A 155 GFEG 158 (160)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 8764
No 8
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=100.00 E-value=1.5e-41 Score=290.79 Aligned_cols=154 Identities=42% Similarity=0.699 Sum_probs=137.3
Q ss_pred CCccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCc
Q 024933 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEK 154 (260)
Q Consensus 75 ~~~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~ 154 (260)
.+.+++||||+|+||+|+|+|+|||++||++.+++.+.++++++++++|+|+++|+++++..+++++++++.+ |+
T Consensus 14 ~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~l-----g~ 88 (182)
T 3l8u_A 14 TLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNIC-----SG 88 (182)
T ss_dssp -CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHHC-----CS
T ss_pred CCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHHC-----CC
Confidence 3468999999999999999999999999999999999989999999999999999999998899999999876 58
Q ss_pred EEEEEEcCCCcCcccccCCC--CeEEEEcCCCCCCCHHHHh-hCcCCCCCceeEEEcCCC-CCCccccHHHHHHHHHHHH
Q 024933 155 RLLAFTKRGTSTHSEISYRK--GDYLIFGSETSGLPPEALL-DCTSETFGGGTIRIPMVE-TYVRCLNLSVSVGIAVYEA 230 (260)
Q Consensus 155 ~iva~~~~~~~~l~~~~~~~--~~aLV~GnE~~GLs~e~l~-~cD~~~~~~~~v~IPm~g-~~v~SLNVsvAaaI~Lyel 230 (260)
++++++..+..+++++++++ +++||||||++|||+++++ .||. +|+|||.| . ++|||||+|+||+|||+
T Consensus 89 ~i~~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~------~v~IPm~g~~-~~SLNVsvAaaI~lyE~ 161 (182)
T 3l8u_A 89 KLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEK------ALRIPVNDQH-VRSLNLSNTVCMIVYEA 161 (182)
T ss_dssp EEEEECSSCSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGG------EEBCCCCTTT-CSCCCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCe------EEEECCCCCC-CCCEeHHHHHHHHHHHH
Confidence 99999988888999999988 9999999999999999996 9999 99999998 6 99999999999999999
Q ss_pred HHccccccCC
Q 024933 231 ARQLNYEQLK 240 (260)
Q Consensus 231 ~rq~~~~~~~ 240 (260)
+||++.+++.
T Consensus 162 ~rq~~~~~~~ 171 (182)
T 3l8u_A 162 LRQQDFIGLE 171 (182)
T ss_dssp HHHTTTGGGG
T ss_pred HHhccccCCc
Confidence 9999988776
No 9
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=282.84 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=135.7
Q ss_pred CCccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHH-HhcCCCcceEEEEEc--CCHHHHHHHHhhhc
Q 024933 75 QNKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLK-RAGLDYWPYVVIKVH--STWAEFRDYFRQQE 151 (260)
Q Consensus 75 ~~~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~-rag~~~~~~v~v~~~--~~~~~~l~~lk~~~ 151 (260)
+..+++||||+|+||+|+|+|+|||++||++.+++.+. +.++++.. |+++++++++++..+ .++.++++.++++
T Consensus 23 ~~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~--~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~~- 99 (184)
T 2ha8_A 23 SISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSL--QCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTE- 99 (184)
T ss_dssp CCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCG--GGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHT-
T ss_pred CCCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECCC--CCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHHC-
Confidence 34578999999999999999999999999999999763 33455554 778888877877754 8999999999876
Q ss_pred CCcEEEEEEcC-CCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHH
Q 024933 152 GEKRLLAFTKR-GTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEA 230 (260)
Q Consensus 152 ~g~~iva~~~~-~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel 230 (260)
|+++++++.+ +..++.+++++++++||||||++|||+++++.||. +|+|||.| .++|||||+|+||+|||+
T Consensus 100 -g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~------~v~IPm~g-~~~SLNvavAaaI~lye~ 171 (184)
T 2ha8_A 100 -GYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDV------CVEIPQQG-IIRSLNVHVSGALLIWEY 171 (184)
T ss_dssp -TCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSE------EEECCCCS-SSSCCCHHHHHHHHHHHH
T ss_pred -CCEEEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCc------EEEECCCC-CCCcchHHHHHHHHHHHH
Confidence 8999999976 56788999999999999999999999999999999 99999999 699999999999999999
Q ss_pred HHccccccCCCCc
Q 024933 231 ARQLNYEQLKTAS 243 (260)
Q Consensus 231 ~rq~~~~~~~~~~ 243 (260)
+||+.+++.++++
T Consensus 172 ~rq~~~~~~~~~~ 184 (184)
T 2ha8_A 172 TRQQLLSHGDTKP 184 (184)
T ss_dssp HHHHHTC------
T ss_pred HHHhhcccCCCCC
Confidence 9999999888764
No 10
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=1.2e-39 Score=281.17 Aligned_cols=151 Identities=26% Similarity=0.344 Sum_probs=134.0
Q ss_pred CccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcE
Q 024933 76 NKFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKR 155 (260)
Q Consensus 76 ~~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~ 155 (260)
..+++||||+|+||+|+|+|+|||++||++.+++...+.++ +++.|+++|+++++++..+.+++++++.++++ |++
T Consensus 20 ~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~--~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~--g~~ 95 (194)
T 1v2x_A 20 QPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV--PTFNETSGGSHKWVYLRVHPDLHEAFRFLKER--GFT 95 (194)
T ss_dssp BTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGS--CCCCSSCSSGGGTSEEEEESSHHHHHHHHHHT--TCE
T ss_pred CCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCc--hhhHHHCCCChheeeeEecCCHHHHHHHHHHC--CCE
Confidence 34689999999999999999999999999866554333333 56778999998889998889999999999976 899
Q ss_pred EEEEEcC-CCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHHcc
Q 024933 156 LLAFTKR-GTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQL 234 (260)
Q Consensus 156 iva~~~~-~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~rq~ 234 (260)
+++++.. +..++.+++++++++||||||++|||+++++.||. +|+|||.| .++|||||+|+||+|||++||+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~------~v~IPm~g-~~~SLNvs~AaaI~lye~~rq~ 168 (194)
T 1v2x_A 96 VYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADG------AIKIPMLG-MVQSLNVSVAAAVILFEAQRQR 168 (194)
T ss_dssp EEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSE------EEECCCCS-SCSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCe------EEEECCCC-CCCceeHHHHHHHHHHHHHHHh
Confidence 9999965 66788999999999999999999999999999999 99999999 5999999999999999999998
Q ss_pred ccc
Q 024933 235 NYE 237 (260)
Q Consensus 235 ~~~ 237 (260)
...
T Consensus 169 ~~~ 171 (194)
T 1v2x_A 169 LKA 171 (194)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 11
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=4.7e-38 Score=274.65 Aligned_cols=151 Identities=25% Similarity=0.234 Sum_probs=133.3
Q ss_pred ccEEEEEeCCCCCCcHHHHHHhhhhcccceEEECCCCCCCChhHHHHhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcEE
Q 024933 77 KFLQVVLVSPQIPGNTGCIARTCAASACGLHLVGPLGFQVDDTKLKRAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRL 156 (260)
Q Consensus 77 ~~l~vvLd~i~dp~NlGaIiRta~afGv~~viv~~~~~~~~~~k~~rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~i 156 (260)
.+++||||+|+||+|+|+|+|||++||++.+++...+.++ ++.+.|+|+|+++.+++..+.+++++++.++++ |+++
T Consensus 24 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~-~~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~--g~~i 100 (211)
T 1zjr_A 24 KDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVDNPVQKLLEFKNR--GFQI 100 (211)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHT--TCEE
T ss_pred CCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc-hHHHHHHcCCCcccceeEecCCHHHHHHHHHHC--CCEE
Confidence 4689999999999999999999999999866554433333 224568999999889998899999999999976 8999
Q ss_pred EEEEcC-CCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHHccc
Q 024933 157 LAFTKR-GTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235 (260)
Q Consensus 157 va~~~~-~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~rq~~ 235 (260)
++++.. +..++.+++++++++||||||++|||+++++.||. +|+|||.| .++|||||+|+||+|||++||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~------~v~IPm~g-~~~SLNvsvAaaI~lye~~rq~~ 173 (211)
T 1zjr_A 101 VATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADK------KIVIPMYG-MAQSLNVSVATGIILYEAQRQRE 173 (211)
T ss_dssp EEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSE------EEECCCCS-SCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCc------EEEeCCCC-CCCeEEHHHHHHHHHHHHHHHhh
Confidence 999965 66788999999999999999999999999999999 99999999 59999999999999999999975
Q ss_pred cc
Q 024933 236 YE 237 (260)
Q Consensus 236 ~~ 237 (260)
..
T Consensus 174 ~~ 175 (211)
T 1zjr_A 174 EK 175 (211)
T ss_dssp HT
T ss_pred cc
Confidence 44
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=3.9e-37 Score=260.69 Aligned_cols=145 Identities=21% Similarity=0.259 Sum_probs=121.7
Q ss_pred ccEEEEEeCCCCCCcHHHHHHhhhhcccc-eEEECCCCCCCC-hhHHHHhcCCCcceEE-EEEcCCHHHHHHHHhhhcCC
Q 024933 77 KFLQVVLVSPQIPGNTGCIARTCAASACG-LHLVGPLGFQVD-DTKLKRAGLDYWPYVV-IKVHSTWAEFRDYFRQQEGE 153 (260)
Q Consensus 77 ~~l~vvLd~i~dp~NlGaIiRta~afGv~-~viv~~~~~~~~-~~k~~rag~~~~~~v~-v~~~~~~~~~l~~lk~~~~g 153 (260)
.+++||||+|+||+|+|+|+|||++||++ .+++.+.+++++ ++++.|+++|..++++ ++.+++++++++.++
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----- 83 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----- 83 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS-----
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC-----
Confidence 46899999999999999999999999997 555677777764 7888888777665554 245689999987653
Q ss_pred cEEEEEEcCCC-------------cCcc---cccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccc
Q 024933 154 KRLLAFTKRGT-------------STHS---EISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCL 217 (260)
Q Consensus 154 ~~iva~~~~~~-------------~~l~---~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SL 217 (260)
++++++.++. ..+. +.++++|++||||||++|||+++++.||. .|+|||.| .++||
T Consensus 84 -~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~------~v~IPm~g-~~~SL 155 (173)
T 3kty_A 84 -LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHR------ICHIPANP-QYSSL 155 (173)
T ss_dssp -EEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSE------EEECCCCS-TTCCC
T ss_pred -eEEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCe------EEEECCCC-CCCeE
Confidence 7999987642 2455 77789999999999999999999999999 99999999 59999
Q ss_pred cHHHHHHHHHHHHHHcc
Q 024933 218 NLSVSVGIAVYEAARQL 234 (260)
Q Consensus 218 NVsvAaaI~Lyel~rq~ 234 (260)
|||+|+||+|||++||+
T Consensus 156 Nvs~AaaI~lye~~r~~ 172 (173)
T 3kty_A 156 NVAQALQLAAWELRYAL 172 (173)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHh
Confidence 99999999999999986
No 13
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=99.97 E-value=1.6e-32 Score=245.33 Aligned_cols=142 Identities=25% Similarity=0.243 Sum_probs=112.3
Q ss_pred cEEEEEeCCCCCCcHHHHHHhhhhcccc-eEEECCCCCCCChhHHHHhcCCC---cceEEEEEcCCHHHHHHHHhhhcCC
Q 024933 78 FLQVVLVSPQIPGNTGCIARTCAASACG-LHLVGPLGFQVDDTKLKRAGLDY---WPYVVIKVHSTWAEFRDYFRQQEGE 153 (260)
Q Consensus 78 ~l~vvLd~i~dp~NlGaIiRta~afGv~-~viv~~~~~~~~~~k~~rag~~~---~~~v~v~~~~~~~~~l~~lk~~~~g 153 (260)
++.||||+|+||+|+|+|+|||++||++ .+++.+. +++.++++.++++|+ ++. ++.+++++++++.+
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~-~~~~~~~a~~~a~GA~~~l~~--~~~~~~l~eal~~~------ 74 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPR-DGWPNPKAVAMASGAGRLLDH--AGLFPTVAEAIRDC------ 74 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCT-TCSSCHHHHHHHGGGHHHHHT--CEEESSHHHHHTTC------
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCC-cCCCcHHHHHHcCCccccCce--EEEeCCHHHHHHhC------
Confidence 6789999999999999999999999996 6666665 344455665544333 443 34469999998754
Q ss_pred cEEEEEEcCCCcCcccccC---------------CCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCcccc
Q 024933 154 KRLLAFTKRGTSTHSEISY---------------RKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLN 218 (260)
Q Consensus 154 ~~iva~~~~~~~~l~~~~~---------------~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLN 218 (260)
.+++|++.++. .+.+..+ .+|++||||||+.|||+++++.||. .|+|||.| .++|||
T Consensus 75 ~~v~att~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~------~v~IP~~~-~~~SLN 146 (249)
T 3onp_A 75 DYVFATTARGR-ELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANA------IVTVPVNP-EFFSLN 146 (249)
T ss_dssp SEEEEEESSCC-CSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSE------EEECCCCT-TCCCCC
T ss_pred CeEEEEcCCCC-CCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCe------EEEEcCCC-CCCcee
Confidence 47899987653 3444333 3589999999999999999999999 99999999 599999
Q ss_pred HHHHHHHHHHHHHHcccc
Q 024933 219 LSVSVGIAVYEAARQLNY 236 (260)
Q Consensus 219 VsvAaaI~Lyel~rq~~~ 236 (260)
||+|++|+|||++||+..
T Consensus 147 va~A~aI~lYE~~rq~~~ 164 (249)
T 3onp_A 147 LAQCVLLLAYEWRRQHDE 164 (249)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999999753
No 14
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=99.97 E-value=8.7e-33 Score=246.30 Aligned_cols=141 Identities=25% Similarity=0.332 Sum_probs=114.9
Q ss_pred cEEEEEeCCCCCCcHHHHHHhhhhcccc-eEEECCCCCCCChhHHHHhcCCCcceEE-EEEcCCHHHHHHHHhhhcCCcE
Q 024933 78 FLQVVLVSPQIPGNTGCIARTCAASACG-LHLVGPLGFQVDDTKLKRAGLDYWPYVV-IKVHSTWAEFRDYFRQQEGEKR 155 (260)
Q Consensus 78 ~l~vvLd~i~dp~NlGaIiRta~afGv~-~viv~~~~~~~~~~k~~rag~~~~~~v~-v~~~~~~~~~l~~lk~~~~g~~ 155 (260)
.+.||||+|+||+|+|+|+|||++||++ .+++.+. +.++++.|+++|+.++++ +..+++++++++.+ .+
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~---~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~------~~ 77 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK---SVDEQSYALSAGAENIVKNARVVDSFDEAVDDC------SL 77 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS---CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTC------SE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC---CCCHHHHHHcCChhheeceeEEeCCHHHHHHhC------Ce
Confidence 5899999999999999999999999997 5555554 567888877666433332 33469999998754 37
Q ss_pred EEEEEcCCCcCccc------------ccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHH
Q 024933 156 LLAFTKRGTSTHSE------------ISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSV 223 (260)
Q Consensus 156 iva~~~~~~~~l~~------------~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAa 223 (260)
++|++.++.. +.. ++++++++||||+|+.|||+++++.||. .|+|||.| .++|||||+|+
T Consensus 78 vvatt~~~~~-~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~------~v~IP~~~-~~~SLNva~A~ 149 (244)
T 3ilk_A 78 VIGTSARLRH-LQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHY------HLNIPANP-DYSSLNLAMAV 149 (244)
T ss_dssp EEEECCCCGG-GTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSE------EECCCCCT-TSCCCCHHHHH
T ss_pred EEEEccCCCC-CCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCe------EEEecCCC-CCCeeeHHHHH
Confidence 8999876432 111 2457899999999999999999999999 99999999 59999999999
Q ss_pred HHHHHHHHHccc
Q 024933 224 GIAVYEAARQLN 235 (260)
Q Consensus 224 aI~Lyel~rq~~ 235 (260)
+|+|||++||..
T Consensus 150 aI~lyE~~rq~~ 161 (244)
T 3ilk_A 150 QLVSYELRMAFL 161 (244)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999863
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.97 E-value=2.2e-32 Score=240.44 Aligned_cols=146 Identities=22% Similarity=0.203 Sum_probs=114.4
Q ss_pred ccEEEEEeCCCCCCcHHHHHHhhhhcccc-eEEECCCCCCC------------------ChhHHHHhcCCCcceE-EEEE
Q 024933 77 KFLQVVLVSPQIPGNTGCIARTCAASACG-LHLVGPLGFQV------------------DDTKLKRAGLDYWPYV-VIKV 136 (260)
Q Consensus 77 ~~l~vvLd~i~dp~NlGaIiRta~afGv~-~viv~~~~~~~------------------~~~k~~rag~~~~~~v-~v~~ 136 (260)
..+.||||+|+||+|+|+|+|||++||++ .+++.+.+... +++++.|+++|....+ .++.
T Consensus 16 ~~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v 95 (223)
T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI 95 (223)
T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE
T ss_pred CCEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEE
Confidence 47899999999999999999999999995 66677665321 2346665544432222 1334
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEEcCCCcCcc----------cc-c---CCCCeEEEEcCCCCCCCHHHHhhCcCCCCCc
Q 024933 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHS----------EI-S---YRKGDYLIFGSETSGLPPEALLDCTSETFGG 202 (260)
Q Consensus 137 ~~~~~~~l~~lk~~~~g~~iva~~~~~~~~l~----------~~-~---~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~ 202 (260)
+++++++++.+ .+++|++.++..... ++ + +.++++||||+|++||++++++.||.
T Consensus 96 ~~~l~eal~~~------~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~----- 164 (223)
T 3ic6_A 96 VATLDEALADT------TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNR----- 164 (223)
T ss_dssp ESCHHHHHTTE------EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSE-----
T ss_pred eCCHHHHHHhC------CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCce-----
Confidence 68999988753 589999987654322 12 2 35899999999999999999999999
Q ss_pred eeEEEcCCCCCCccccHHHHHHHHHHHHHHccc
Q 024933 203 GTIRIPMVETYVRCLNLSVSVGIAVYEAARQLN 235 (260)
Q Consensus 203 ~~v~IPm~g~~v~SLNVsvAaaI~Lyel~rq~~ 235 (260)
.|+|||.| .++|||||+|++|+|||++||+.
T Consensus 165 -~v~IPm~~-~~~SLNva~A~aI~lye~~rq~~ 195 (223)
T 3ic6_A 165 -LMTINGNP-DYFSLNLAQAVQVVCYEIFSQTD 195 (223)
T ss_dssp -EECCCCCT-TCCCCCHHHHHHHHHHHHHHTTT
T ss_pred -EEEecCCC-CCCeeEHHHHHHHHHHHHHHhhc
Confidence 99999999 59999999999999999999983
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.70 E-value=2.3e-17 Score=141.70 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=106.4
Q ss_pred cEEEEEeC-CCCCCc------------HHHHHHhhhhcccc-eEEECCCCCCCChhHHHH--------hcC-------CC
Q 024933 78 FLQVVLVS-PQIPGN------------TGCIARTCAASACG-LHLVGPLGFQVDDTKLKR--------AGL-------DY 128 (260)
Q Consensus 78 ~l~vvLd~-i~dp~N------------lGaIiRta~afGv~-~viv~~~~~~~~~~k~~r--------ag~-------~~ 128 (260)
.+.|+|.+ |-...| +|.|+|+|..||++ .++|.|.+. .. ..+.+ .|+ +.
T Consensus 4 ~~~v~LvhyPv~~~~~~~~~t~vtn~dihdiARamkt~Gl~~l~LV~P~~~-~~-~~a~~~~~~w~~~~Ga~~np~r~d~ 81 (192)
T 3dcm_X 4 KVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRA-QQ-DMVSKMLKFWREGFGSRYNPSRAES 81 (192)
T ss_dssp SEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHH-HH-HHHHHHHHHHHTSGGGGTCSSSHHH
T ss_pred ceEEEEecccccCCCCCEeeeecccccHHHHHHHHHhcCCceEEEECCccc-cH-HHHHHHHHhhhcccCcccCcCHHHH
Confidence 57788887 777788 99999999999997 778887531 11 11111 233 12
Q ss_pred cceEEEEEcCCHHHHHHHHhhhc-CCcEEEEEEcCCC---cCcccc-----cCCCCeEEEEcCCCCCCCHHHHhhCcCCC
Q 024933 129 WPYVVIKVHSTWAEFRDYFRQQE-GEKRLLAFTKRGT---STHSEI-----SYRKGDYLIFGSETSGLPPEALLDCTSET 199 (260)
Q Consensus 129 ~~~v~v~~~~~~~~~l~~lk~~~-~g~~iva~~~~~~---~~l~~~-----~~~~~~aLV~GnE~~GLs~e~l~~cD~~~ 199 (260)
+.. ++.+++++++++.+.+.. .+..++|++.+.. .+..++ ...++++||||. +.||++|+++.||.
T Consensus 82 L~~--a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~-- 156 (192)
T 3dcm_X 82 LKL--VKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDY-- 156 (192)
T ss_dssp HTT--EEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSE--
T ss_pred hcc--CeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCE--
Confidence 233 455699999999998532 2567888887632 222222 245789999999 69999999999999
Q ss_pred CCceeE-EEcCCCCCCccccHHHHHHHHHHHHHH
Q 024933 200 FGGGTI-RIPMVETYVRCLNLSVSVGIAVYEAAR 232 (260)
Q Consensus 200 ~~~~~v-~IPm~g~~v~SLNVsvAaaI~Lyel~r 232 (260)
.+ .||..+ ...||||++|++|+||+++.
T Consensus 157 ----~l~~Ip~~~-eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 157 ----VLEPIRAQS-DFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp ----EBCCTTTTS-SCCCCCHHHHHHHHHHHHTT
T ss_pred ----EEccCCCCC-CCCccCHHHHHHHHHHHHcC
Confidence 89 799998 49999999999999999853
No 17
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=94.86 E-value=0.073 Score=45.01 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=75.9
Q ss_pred HHHhhhhcccceEEECCCCCCCChhHHH--------HhcCCCcceEEEEEcCCHHHHHHHHhhhcCCcEEEEEEcCCCc-
Q 024933 95 IARTCAASACGLHLVGPLGFQVDDTKLK--------RAGLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTS- 165 (260)
Q Consensus 95 IiRta~afGv~~viv~~~~~~~~~~k~~--------rag~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~iva~~~~~~~- 165 (260)
+.-||-|||++.+++...+ +++++ |=|-.+. +....+|...++.. +..|+-+++.|..
T Consensus 21 V~LtARAfGA~~iil~~~~----D~~v~esv~dV~~rWGG~F~----ve~~~~wk~~ik~w-----gG~VVHLTMYG~~i 87 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEE----DEKVKESVEDVVKRWGGPFF----IEFNRNWRKVMKEF-----TGVKVHLTMYGLHV 87 (201)
T ss_dssp HHHHHHHTTCSEEEESSSC----CHHHHHHHHHHHHHHCSCCB----CCBCSCHHHHHHHC-----CSEEEEEEEEEEEH
T ss_pred HHHHHHHhcCCeEEEcCCc----ChhHHHHHHHHHHhcCCceE----EEECCCHHHHHHhc-----CCEEEEEecCCCch
Confidence 4568999999999997642 22222 2132221 22347888888765 4699999987742
Q ss_pred --Cccccc----CCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHHH
Q 024933 166 --THSEIS----YRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAAR 232 (260)
Q Consensus 166 --~l~~~~----~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~r 232 (260)
...++. -.++..+|+|.| =+|.++.+.+|. -|.|--.+ .|= ..|.||+|-.++.
T Consensus 88 ~dvi~eIr~~~~~~~~iLVVVGae--KVP~evYelADy------NVaVgnQP---HSE--VAALAvFLDrl~~ 147 (201)
T 2yy8_A 88 DDVIEELKEKLKKGEDFMIIVGAE--KVPREVYELADY------NVAIGNQP---HSE--VAALAVLLDRLLE 147 (201)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSS--CCCHHHHHHCSE------EEESSSSC---CCH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCEEEEECCC--cCCHHHHhhcCc------ceeeCCCC---hHH--HHHHHHHHHHhcC
Confidence 122332 246899999987 589999999999 99996544 232 5688899988764
No 18
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=94.45 E-value=0.16 Score=42.20 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=72.8
Q ss_pred HHHhhhhcccceEEECCCCCCCChhHHHHh--------cCCCcceEEEEEcCCHHHHHHHHhhhcCCcEEEEEEcCCCc-
Q 024933 95 IARTCAASACGLHLVGPLGFQVDDTKLKRA--------GLDYWPYVVIKVHSTWAEFRDYFRQQEGEKRLLAFTKRGTS- 165 (260)
Q Consensus 95 IiRta~afGv~~viv~~~~~~~~~~k~~ra--------g~~~~~~v~v~~~~~~~~~l~~lk~~~~g~~iva~~~~~~~- 165 (260)
+.-||-|||++.+++... +++++.+ |-.+ . +. ..+|...++.. +..|+-++..|..
T Consensus 24 V~LtARAfGA~~iil~~~-----D~~v~esv~dV~~rwGG~F--~--ve-~~~w~~~i~~w-----~G~VVHLTMYG~~i 88 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTE-----DKSVFESVRDVVERWGGDF--F--IK-AVSWKKLLREF-----DGLKVHLTMYGIPL 88 (178)
T ss_dssp HHHHHHHTTCSEEEESSC-----CHHHHHHHHHHHHHHCSCC--E--EE-ECCHHHHHHHC-----CSEEEEEEEEEEEH
T ss_pred HHHHHHHhCCCeeEEeCC-----CHHHHHHHHHHHHhcCCce--E--EE-ecCHHHHHHHc-----CCEEEEEecCCCch
Confidence 456889999999999753 2332221 3222 2 33 48898888765 4699999987742
Q ss_pred --CcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCccccHHHHHHHHHHHHH
Q 024933 166 --THSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEAA 231 (260)
Q Consensus 166 --~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~SLNVsvAaaI~Lyel~ 231 (260)
...++.-.++..+|+|.| =++.++.+.+|. -|+|--.+ .|= ..|.||+|-.++
T Consensus 89 ~dvi~~Ir~~~~iLvVVGae--KVP~evYelADy------NVaVgnQP---HSE--VAALAvFLDrl~ 143 (178)
T 2o3a_A 89 PQKLEEIKRADKVLVVVGAE--KVPPEVYELCDL------NISIGTQP---HSE--VAALAVFLDRVL 143 (178)
T ss_dssp HHHHHHHHTCSEEEEEEC------CTTHHHHSSE------EEESSSSC---CCH--HHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCEEEEECCC--cCCHHHHhhcCc------ceeeCCCC---hHH--HHHHHHHHHHhh
Confidence 123333367899999987 589999999999 99986544 232 567889998876
No 19
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=91.41 E-value=0.96 Score=38.42 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHH----HHhhCcCCCCCceeEEEcCCCC
Q 024933 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE----ALLDCTSETFGGGTIRIPMVET 212 (260)
Q Consensus 137 ~~~~~~~l~~lk~~~~g~~iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e----~l~~cD~~~~~~~~v~IPm~g~ 212 (260)
..++++.++.+++. .++|-++.+|. ++.+..++...++|+|- ..|++++ +.+..+. .++| |
T Consensus 111 ~~sle~ll~e~~~~---~~v~~L~E~G~-~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~------~iSi---g- 175 (197)
T 2qmm_A 111 RKGLEELIEELSEK---YSIIYLKEDGV-DISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAAL------KLSL---S- 175 (197)
T ss_dssp CCCHHHHHHHHHHH---SEEEEEEEEEE-EGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSE------EEEC---C-
T ss_pred CCCHHHHHHHhhcC---CcEEEEcCCCC-CCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCe------EEEE---C-
Confidence 47999999998754 46888877664 45555667789999999 8899999 6667666 7877 3
Q ss_pred CCccccHHHHHHHHHHHHHHc
Q 024933 213 YVRCLNLSVSVGIAVYEAARQ 233 (260)
Q Consensus 213 ~v~SLNVsvAaaI~Lyel~rq 233 (260)
-.+|=.+++++++-|++-|.
T Consensus 176 -p~~L~A~~vi~~vh~~ld~~ 195 (197)
T 2qmm_A 176 -PLSLLAEQCVVIAHHHLDRL 195 (197)
T ss_dssp -SSCCCHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHhhc
Confidence 26899999999999998543
No 20
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=88.92 E-value=1.8 Score=37.06 Aligned_cols=85 Identities=15% Similarity=0.211 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEcCCCCCCcc
Q 024933 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIPMVETYVRC 216 (260)
Q Consensus 137 ~~~~~~~l~~lk~~~~g~~iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IPm~g~~v~S 216 (260)
..++++.++.+++. +++|-+..+| .++.++.++...++|+| ...|++++..+..+. .+...|+| | -.+
T Consensus 120 ~~~fe~ll~e~~~~---~~ly~L~e~G-~di~~~~~~~~~~FvLg-DH~g~~~eee~~L~~--~~~~~iSl---G--P~~ 187 (208)
T 2qwv_A 120 TISFEALLGELAEH---HSLYMMDKKG-DSIRDIKIGPNPCFILT-DHIPMPKKSGNSMKR--LGVEKISL---G--PKM 187 (208)
T ss_dssp CCCHHHHHHHHHTT---SEEEEEEEEE-EETTTSCCCSSEEEEEC-C----------CTTT--TTCEEEEC---C--SSC
T ss_pred cCCHHHHHHHHHhc---CcEEEEeCCC-cCHhhccCCCCCEEEEc-CCCCCCHHHHHHHHh--cCCeEEEe---C--chH
Confidence 37999999998764 5688777666 46777888889999999 699999998777654 22346666 3 367
Q ss_pred ccHHHHHHHHHHHHHHc
Q 024933 217 LNLSVSVGIAVYEAARQ 233 (260)
Q Consensus 217 LNVsvAaaI~Lyel~rq 233 (260)
|=.+++..++-+|+=|.
T Consensus 188 l~A~hcI~~vhn~LD~~ 204 (208)
T 2qwv_A 188 LFASQCVTLIHNEIDHQ 204 (208)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998543
No 21
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=88.38 E-value=12 Score=32.45 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=70.1
Q ss_pred EEEEEeCCCCCCcHHHHHHhhhhcccceE--EECCCCC-CCChhH----H------HH-h----cCCCcceEEEEEcCCH
Q 024933 79 LQVVLVSPQIPGNTGCIARTCAASACGLH--LVGPLGF-QVDDTK----L------KR-A----GLDYWPYVVIKVHSTW 140 (260)
Q Consensus 79 l~vvLd~i~dp~NlGaIiRta~afGv~~v--iv~~~~~-~~~~~k----~------~r-a----g~~~~~~v~v~~~~~~ 140 (260)
-+.++..+-.+..+=-|++-|--+|++.+ +.+.++. .++..+ . .. | +...+|.+. ...++
T Consensus 79 ~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~--~~~~~ 156 (251)
T 4e8b_A 79 HIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIR--PAMDL 156 (251)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBC--CCEEH
T ss_pred eEEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEEC--CcCCH
Confidence 34455667778899999999999999855 3455554 333221 1 11 2 345566542 23577
Q ss_pred HHHHHHHhhhcCCcEEEEEEcCCCcCcccccC-CCCeEEEEcCCCCCCCHHHHhhCcC
Q 024933 141 AEFRDYFRQQEGEKRLLAFTKRGTSTHSEISY-RKGDYLIFGSETSGLPPEALLDCTS 197 (260)
Q Consensus 141 ~~~l~~lk~~~~g~~iva~~~~~~~~l~~~~~-~~~~aLV~GnE~~GLs~e~l~~cD~ 197 (260)
.++++... .+ ..+.+.......+.+... .+++++++|.|+ |+|++.++.+..
T Consensus 157 ~~~l~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~ 209 (251)
T 4e8b_A 157 EAWCAEQD---EG-LKLNLHPRASNSINTLPLPVERVRLLIGPEG-GLSADEIAMTAR 209 (251)
T ss_dssp HHHHHCCC---SS-EEEEECTTCSCBGGGSCSCCCEEEEEECCTT-CCCHHHHHHHHH
T ss_pred HHHHhhcC---cC-ceEeechhhhCchhhccccCCcEEEEECCCC-CCCHHHHHHHHH
Confidence 77776432 23 344444444455555544 356899999996 999999887764
No 22
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=84.50 E-value=5.7 Score=33.95 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHhhhcCCcEEEEEEcCCCcCcccccCCCCeEEEEcCCCCCCCHH---H-HhhCcCCCCCceeEEEcCCCC
Q 024933 137 HSTWAEFRDYFRQQEGEKRLLAFTKRGTSTHSEISYRKGDYLIFGSETSGLPPE---A-LLDCTSETFGGGTIRIPMVET 212 (260)
Q Consensus 137 ~~~~~~~l~~lk~~~~g~~iva~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e---~-l~~cD~~~~~~~~v~IPm~g~ 212 (260)
..++++.++.+.+. +..+|-++.+|. ++.+..+ ...++|+|- ..|++++ . .+..+. .++| |
T Consensus 122 ~~sle~ll~e~~~~--~~~v~~L~E~G~-~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~------~iSi---g- 186 (211)
T 3aia_A 122 RLGFRNLVLEKLEE--GKNIYYLHMNGE-DVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAK------RISL---S- 186 (211)
T ss_dssp CCCHHHHHHHHHHT--TCEEEEEEEEEE-EGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCE------EEEC---C-
T ss_pred cCCHHHHHHHHhhc--CCcEEEEcCCCC-CCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCe------EEEE---C-
Confidence 47999999998754 447888887764 4444555 788999999 7899999 5 445555 7777 3
Q ss_pred CCccccHHHHHHHHHHHHHHc
Q 024933 213 YVRCLNLSVSVGIAVYEAARQ 233 (260)
Q Consensus 213 ~v~SLNVsvAaaI~Lyel~rq 233 (260)
-.+|=.++++.++-+++=|.
T Consensus 187 -p~~L~A~hvi~~vh~~LD~~ 206 (211)
T 3aia_A 187 -PLELHANHCITIIHNVLDKK 206 (211)
T ss_dssp -SSCCCHHHHHHHHHHHHHHC
T ss_pred -CcchHHHHHHHHHHHHhccc
Confidence 26899999999999998654
No 23
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=75.80 E-value=34 Score=29.67 Aligned_cols=115 Identities=8% Similarity=0.048 Sum_probs=66.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHhhhhcccceEE--ECCCCCCCCh--h---HHHH-h----cCCCcceEEEEEcCCHHHHHH
Q 024933 78 FLQVVLVSPQIPGNTGCIARTCAASACGLHL--VGPLGFQVDD--T---KLKR-A----GLDYWPYVVIKVHSTWAEFRD 145 (260)
Q Consensus 78 ~l~vvLd~i~dp~NlGaIiRta~afGv~~vi--v~~~~~~~~~--~---k~~r-a----g~~~~~~v~v~~~~~~~~~l~ 145 (260)
++.|+.--++...-+=-+++-|--+|++.++ .+.++..-.. . ++.. | +...+|.+. ...++.++++
T Consensus 78 ~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~--~~~~~~~~l~ 155 (257)
T 3kw2_A 78 RITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIR--VNIPIQTVIA 155 (257)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEE--EEEEHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEec--CcCCHHHHHh
Confidence 4555544333234466779999999998554 3445432211 1 1222 2 345566543 3468888887
Q ss_pred HHhhhcCCcEEEEEEcC-------CCcCcccc-c-CCCCeEEEEcCCCCCCCHHHHhhCcC
Q 024933 146 YFRQQEGEKRLLAFTKR-------GTSTHSEI-S-YRKGDYLIFGSETSGLPPEALLDCTS 197 (260)
Q Consensus 146 ~lk~~~~g~~iva~~~~-------~~~~l~~~-~-~~~~~aLV~GnE~~GLs~e~l~~cD~ 197 (260)
.+... +..+++.... +..++.+. . ..+++++++|.|+ |+|++.++.+..
T Consensus 156 ~~~~~--~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPEG-Gfs~~Ei~~~~~ 213 (257)
T 3kw2_A 156 DTPKA--AVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALL 213 (257)
T ss_dssp HSCTT--SEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHH
T ss_pred hcccc--CCEEEEEcccccccccccccchhHhhccCCCcEEEEECCCC-CCCHHHHHHHHH
Confidence 64432 4556665222 22233222 2 2467999999996 999999887754
No 24
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=60.32 E-value=83 Score=27.09 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=62.0
Q ss_pred EEEEeCCCCCCcHHHHHHhhhhcccceEE--ECCCCCCC-ChhH----------HHH-h----cCCCcceEEEEEcCCHH
Q 024933 80 QVVLVSPQIPGNTGCIARTCAASACGLHL--VGPLGFQV-DDTK----------LKR-A----GLDYWPYVVIKVHSTWA 141 (260)
Q Consensus 80 ~vvLd~i~dp~NlGaIiRta~afGv~~vi--v~~~~~~~-~~~k----------~~r-a----g~~~~~~v~v~~~~~~~ 141 (260)
+.++-.+-.+..+=-+++-|--+|++.++ .+.++..- ..++ +.. | +...+|.+. ...++.
T Consensus 82 l~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~--~~~~~~ 159 (257)
T 1vhy_A 82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIR--PLMKLQ 159 (257)
T ss_dssp EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEEC--CCEEHH
T ss_pred EEEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEe--ccCCHH
Confidence 33444556678999999999999998543 34555432 2221 111 1 344566543 345788
Q ss_pred HHHHHHhhhcCCcEEEEEEcCCCcCccccc--CCCCeEEEEcCCCCCCCHHHHhhCcC
Q 024933 142 EFRDYFRQQEGEKRLLAFTKRGTSTHSEIS--YRKGDYLIFGSETSGLPPEALLDCTS 197 (260)
Q Consensus 142 ~~l~~lk~~~~g~~iva~~~~~~~~l~~~~--~~~~~aLV~GnE~~GLs~e~l~~cD~ 197 (260)
++++... .+..+++ .......+.++. ..+++++++|.|| |+|++.++.+..
T Consensus 160 ~~l~~~~---~~~~l~~-~~~~~~~l~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~ 212 (257)
T 1vhy_A 160 DWCAEND---GALKLNL-HPRAHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQ 212 (257)
T ss_dssp HHHTCCS---SCEEEEE-CTTCCCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHH
T ss_pred HHHhcCC---CCcEEEE-cCCCccchhhhhccCCCeEEEEEcCCC-CCCHHHHHHHHH
Confidence 8776321 1344444 333333333331 2347999999996 999988877654
No 25
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=58.82 E-value=90 Score=27.03 Aligned_cols=113 Identities=14% Similarity=0.187 Sum_probs=65.0
Q ss_pred EEEEeCCCCCCcHHHHHHhhhhcccceEE-E-CCCCC-CCChh----H------HHH-h----cCCCcceEEEEEcCCHH
Q 024933 80 QVVLVSPQIPGNTGCIARTCAASACGLHL-V-GPLGF-QVDDT----K------LKR-A----GLDYWPYVVIKVHSTWA 141 (260)
Q Consensus 80 ~vvLd~i~dp~NlGaIiRta~afGv~~vi-v-~~~~~-~~~~~----k------~~r-a----g~~~~~~v~v~~~~~~~ 141 (260)
+.++..+-.+..+=-+++-|--+|++.++ + +.++. .+..+ | +.. | +...+|.+ ....++.
T Consensus 83 v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v--~~~~~~~ 160 (268)
T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRV--MDVHSFQ 160 (268)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEE--CCCBCHH
T ss_pred EEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEE--ecCCCHH
Confidence 44555666779999999999999998543 3 33443 22111 1 111 1 34455654 3357899
Q ss_pred HHHHHHhhhcCCcEEEEEEcCCC--cCc------ccccCCCCeEEEEcCCCCCCCHHHHhhCcC
Q 024933 142 EFRDYFRQQEGEKRLLAFTKRGT--STH------SEISYRKGDYLIFGSETSGLPPEALLDCTS 197 (260)
Q Consensus 142 ~~l~~lk~~~~g~~iva~~~~~~--~~l------~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~ 197 (260)
++++..... +..+++-+.... ..+ .++.-.++++|++|.|+ |+|++.++.+..
T Consensus 161 ~~l~~~~~~--~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~ 221 (268)
T 1vhk_A 161 QLLQRMQDF--DKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTE 221 (268)
T ss_dssp HHHHHGGGS--SEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHH
T ss_pred HHHhhCccC--CeEEEEecCcccccccccccccchhccCCCcEEEEEcCCC-CCCHHHHHHHHH
Confidence 998865431 345554332211 123 23321237899999996 999988877654
No 26
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=53.03 E-value=16 Score=29.80 Aligned_cols=48 Identities=10% Similarity=0.244 Sum_probs=35.7
Q ss_pred CcEEEEEEcCCCcC--------cccc--cCCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEE
Q 024933 153 EKRLLAFTKRGTST--------HSEI--SYRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRI 207 (260)
Q Consensus 153 g~~iva~~~~~~~~--------l~~~--~~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~I 207 (260)
+..+|+++.+|... +.+. .-...+++|+|. ..|+++++++.||. .+++
T Consensus 74 ~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl~~~v~~rA~~------~lSl 131 (163)
T 4fak_A 74 QSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGLHKDVLQRSNY------ALSF 131 (163)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBCCHHHHHHCSE------EEES
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEEC-CCccCHHHHHhcCc------eEEE
Confidence 56899999877531 1111 113469999998 89999999999998 7766
No 27
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=35.96 E-value=25 Score=28.80 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=43.3
Q ss_pred CcEEEEEEcCCCcC--------cccccCC--CCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEE-cCCCCCCccccHHH
Q 024933 153 EKRLLAFTKRGTST--------HSEISYR--KGDYLIFGSETSGLPPEALLDCTSETFGGGTIRI-PMVETYVRCLNLSV 221 (260)
Q Consensus 153 g~~iva~~~~~~~~--------l~~~~~~--~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~I-Pm~g~~v~SLNVsv 221 (260)
+..+|+++.+|... +.+.... ..+++|+|. ..|+++++++.||. .+++ +|. +.=-.
T Consensus 70 ~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl~~~v~~rA~~------~lSlS~mT------fpHqL 136 (167)
T 1to0_A 70 DAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGG-SLGLSDTVMKRADE------KLSFSKMT------FPHQL 136 (167)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCCCHHHHHHCSE------EEESCSSC------CCHHH
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCCCHHHHHhhCc------EEEccCCC------CcHHH
Confidence 45688888877431 1111112 468999999 89999999999998 7766 332 22234
Q ss_pred HHHHHHHHHHHc
Q 024933 222 SVGIAVYEAARQ 233 (260)
Q Consensus 222 AaaI~Lyel~rq 233 (260)
+--|++=.++|.
T Consensus 137 ~RliL~EQiYRA 148 (167)
T 1to0_A 137 MRLILVEQIYRA 148 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444554445554
No 28
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=32.56 E-value=27 Score=28.44 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=43.2
Q ss_pred CcEEEEEEcCCCcC----c----cccc-CCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEEc-CCCCCCccccHHHH
Q 024933 153 EKRLLAFTKRGTST----H----SEIS-YRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRIP-MVETYVRCLNLSVS 222 (260)
Q Consensus 153 g~~iva~~~~~~~~----l----~~~~-~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~IP-m~g~~v~SLNVsvA 222 (260)
+..+|+++.+|... + .+.. ....+++|+|. ..|+++++++.||. .+++- |. +.=-.+
T Consensus 65 ~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl~~~v~~rAd~------~lSlS~mT------fpHqL~ 131 (163)
T 1o6d_A 65 GSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHR------VFSLSKMT------FTHGMT 131 (163)
T ss_dssp TCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSE------EEECCSSC------CCHHHH
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCc------eEEccCCC------CcHHHH
Confidence 45689999877431 1 1110 11579999998 89999999999998 77763 32 222344
Q ss_pred HHHHHHHHHHc
Q 024933 223 VGIAVYEAARQ 233 (260)
Q Consensus 223 aaI~Lyel~rq 233 (260)
--|++=.++|.
T Consensus 132 RliL~EQiYRA 142 (163)
T 1o6d_A 132 VLIVLEQIFRA 142 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44554445554
No 29
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=32.32 E-value=33 Score=19.45 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 024933 219 LSVSVGIAVYEAA 231 (260)
Q Consensus 219 VsvAaaI~Lyel~ 231 (260)
+++|+++++|-|.
T Consensus 13 iav~aaVllylW~ 25 (26)
T 3j1r_A 13 IAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5889999999764
No 30
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=30.64 E-value=27 Score=28.21 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred EEEEEEcCCCcC----c----cccc-CCCCeEEEEcCCCCCCCHHHHhhCcCCCCCceeEEE
Q 024933 155 RLLAFTKRGTST----H----SEIS-YRKGDYLIFGSETSGLPPEALLDCTSETFGGGTIRI 207 (260)
Q Consensus 155 ~iva~~~~~~~~----l----~~~~-~~~~~aLV~GnE~~GLs~e~l~~cD~~~~~~~~v~I 207 (260)
.+|+++.+|... + .+.. ....+++|+|. ..|+++++++.||. .++.
T Consensus 68 ~vi~Ld~~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl~~~v~~rA~~------~lSl 122 (155)
T 1ns5_A 68 RIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGG-PEGLSPACKAAAEQ------SWSL 122 (155)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBCCHHHHHHCSE------EECC
T ss_pred cEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCc------eEEc
Confidence 589999877431 1 1110 11478999998 89999999999997 6655
Done!