Query 024934
Match_columns 260
No_of_seqs 181 out of 2205
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3135 1,4-benzoquinone reduc 100.0 4.9E-44 1.1E-48 289.2 19.4 200 59-259 1-202 (203)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 2.5E-38 5.5E-43 270.3 22.3 196 60-257 1-197 (197)
3 PRK03767 NAD(P)H:quinone oxido 100.0 6.8E-38 1.5E-42 268.2 23.4 198 59-259 1-200 (200)
4 COG0655 WrbA Multimeric flavod 100.0 5E-30 1.1E-34 220.6 18.1 196 60-258 1-206 (207)
5 PRK05569 flavodoxin; Provision 99.9 1.8E-24 4E-29 174.7 17.2 138 59-251 1-140 (141)
6 PRK06756 flavodoxin; Provision 99.9 4.5E-24 9.8E-29 174.1 17.0 146 59-254 1-147 (148)
7 PRK05568 flavodoxin; Provision 99.9 4.9E-24 1.1E-28 172.3 16.8 139 59-252 1-141 (142)
8 PF03358 FMN_red: NADPH-depend 99.9 6.3E-24 1.4E-28 173.3 11.3 141 60-204 1-144 (152)
9 PRK11921 metallo-beta-lactamas 99.9 1E-22 2.3E-27 190.9 16.2 152 49-254 240-393 (394)
10 PRK06242 flavodoxin; Provision 99.9 1.7E-22 3.7E-27 164.6 13.9 147 60-253 1-149 (150)
11 PRK06703 flavodoxin; Provision 99.9 4.5E-22 9.8E-27 162.8 16.2 148 59-257 1-150 (151)
12 PRK05452 anaerobic nitric oxid 99.9 6.1E-22 1.3E-26 189.8 16.4 147 58-255 250-397 (479)
13 TIGR01753 flav_short flavodoxi 99.9 1.4E-21 3.1E-26 156.7 15.3 138 62-251 1-140 (140)
14 PRK07308 flavodoxin; Validated 99.9 4.8E-21 1E-25 155.9 15.5 144 59-253 1-145 (146)
15 PRK10569 NAD(P)H-dependent FMN 99.9 1.7E-20 3.6E-25 159.6 16.7 170 60-255 1-173 (191)
16 PRK09267 flavodoxin FldA; Vali 99.8 3E-19 6.4E-24 148.7 18.4 156 59-251 1-164 (169)
17 TIGR03566 FMN_reduc_MsuE FMN r 99.8 7.3E-20 1.6E-24 153.3 14.8 169 61-255 1-172 (174)
18 TIGR03567 FMN_reduc_SsuE FMN r 99.8 1.1E-19 2.4E-24 151.9 14.9 167 61-252 1-170 (171)
19 PRK00170 azoreductase; Reviewe 99.8 6.8E-20 1.5E-24 156.2 12.1 140 59-201 1-170 (201)
20 COG0426 FpaA Uncharacterized f 99.8 4.2E-19 9E-24 163.6 13.8 150 49-252 239-388 (388)
21 PRK09739 hypothetical protein; 99.8 3.7E-19 7.9E-24 152.1 10.2 117 59-177 3-132 (199)
22 PRK01355 azoreductase; Reviewe 99.8 4E-18 8.7E-23 145.8 14.1 142 59-201 1-164 (199)
23 TIGR02690 resist_ArsH arsenica 99.8 3.5E-17 7.6E-22 141.6 17.8 178 56-257 23-203 (219)
24 PRK09271 flavodoxin; Provision 99.7 3.5E-17 7.6E-22 135.4 14.2 144 60-255 1-148 (160)
25 PRK13556 azoreductase; Provisi 99.7 2.1E-17 4.6E-22 142.2 12.8 141 59-201 1-176 (208)
26 PRK12359 flavodoxin FldB; Prov 99.7 6E-16 1.3E-20 129.4 18.5 115 60-202 1-118 (172)
27 TIGR01752 flav_long flavodoxin 99.7 2.7E-15 6E-20 124.9 17.0 114 61-202 1-117 (167)
28 PRK07116 flavodoxin; Provision 99.7 3.2E-16 6.9E-21 129.6 11.0 110 58-177 1-118 (160)
29 TIGR01754 flav_RNR ribonucleot 99.7 1.3E-15 2.8E-20 123.2 13.8 107 60-193 1-111 (140)
30 PF12682 Flavodoxin_4: Flavodo 99.7 3.5E-16 7.6E-21 129.0 10.4 119 61-192 1-128 (156)
31 PRK11104 hemG protoporphyrinog 99.7 5.1E-16 1.1E-20 130.6 9.8 88 60-175 1-88 (177)
32 PRK06934 flavodoxin; Provision 99.7 7.3E-16 1.6E-20 133.3 10.6 125 57-191 33-183 (221)
33 PF02525 Flavodoxin_2: Flavodo 99.6 9.7E-16 2.1E-20 130.6 9.1 141 60-202 1-173 (199)
34 PRK13555 azoreductase; Provisi 99.6 1.1E-14 2.3E-19 125.6 14.2 137 59-198 1-173 (208)
35 PF12641 Flavodoxin_3: Flavodo 99.6 7.6E-15 1.6E-19 121.5 11.5 146 63-248 1-160 (160)
36 PRK09004 FMN-binding protein M 99.6 2.6E-14 5.7E-19 116.6 13.9 118 59-202 1-119 (146)
37 COG0716 FldA Flavodoxins [Ener 99.6 7.5E-14 1.6E-18 114.3 14.7 147 59-253 1-150 (151)
38 PRK04930 glutathione-regulated 99.6 1.2E-13 2.7E-18 116.6 15.7 132 58-202 4-150 (184)
39 COG0431 Predicted flavoprotein 99.6 3.9E-14 8.4E-19 119.9 11.8 134 60-203 1-137 (184)
40 PF12724 Flavodoxin_5: Flavodo 99.5 1.9E-14 4.2E-19 116.7 8.5 87 63-177 1-87 (143)
41 PF00258 Flavodoxin_1: Flavodo 99.5 1.5E-13 3.2E-18 110.9 9.7 119 64-202 1-124 (143)
42 PRK08105 flavodoxin; Provision 99.5 1.7E-12 3.6E-17 106.3 13.6 119 59-201 1-120 (149)
43 COG2249 MdaB Putative NADPH-qu 99.4 7.6E-13 1.6E-17 112.3 11.0 114 60-176 1-124 (189)
44 COG4635 HemG Flavodoxin [Energ 99.4 4.9E-13 1.1E-17 108.6 7.1 90 60-176 1-90 (175)
45 PRK00871 glutathione-regulated 99.4 1.6E-11 3.5E-16 103.1 15.4 128 62-202 2-142 (176)
46 COG1182 AcpD Acyl carrier prot 99.3 1.9E-10 4.2E-15 97.4 14.1 141 59-200 1-172 (202)
47 PRK05723 flavodoxin; Provision 99.2 3.7E-10 8.1E-15 92.7 14.7 117 60-201 1-121 (151)
48 KOG4530 Predicted flavoprotein 99.2 3.1E-11 6.8E-16 97.9 7.9 133 59-200 10-150 (199)
49 PRK10953 cysJ sulfite reductas 99.1 1.9E-09 4.2E-14 106.3 14.4 120 58-200 60-180 (600)
50 TIGR01931 cysJ sulfite reducta 99.0 4.7E-09 1E-13 103.6 14.2 120 58-200 57-177 (597)
51 PRK03600 nrdI ribonucleotide r 98.7 3.3E-07 7E-12 73.8 10.9 64 60-154 1-69 (134)
52 TIGR00333 nrdI ribonucleoside- 98.4 2.6E-06 5.7E-11 67.6 10.2 71 64-174 1-72 (125)
53 PRK02551 flavoprotein NrdI; Pr 97.9 0.00027 5.8E-09 58.1 11.6 90 59-173 1-102 (154)
54 KOG1159 NADP-dependent flavopr 97.8 8.4E-05 1.8E-09 70.5 9.3 119 60-200 1-121 (574)
55 PF07972 Flavodoxin_NdrI: NrdI 96.9 0.0033 7.2E-08 49.7 6.6 62 64-153 1-67 (122)
56 PRK10310 PTS system galactitol 96.1 0.014 3.1E-07 43.9 5.3 38 59-97 1-39 (94)
57 TIGR00853 pts-lac PTS system, 95.7 0.036 7.9E-07 41.8 6.2 61 58-140 2-62 (95)
58 COG1780 NrdI Protein involved 95.7 0.31 6.7E-06 39.2 11.5 63 61-153 2-69 (141)
59 COG1440 CelA Phosphotransferas 95.3 0.14 3E-06 39.0 7.8 87 59-179 1-89 (102)
60 COG0369 CysJ Sulfite reductase 95.2 0.058 1.3E-06 53.5 7.1 93 58-173 46-139 (587)
61 COG1445 FrwB Phosphotransferas 95.1 0.11 2.4E-06 40.8 7.2 64 59-138 1-66 (122)
62 PRK10427 putative PTS system f 94.9 0.17 3.6E-06 39.6 7.6 64 59-138 2-67 (114)
63 PRK10499 PTS system N,N'-diace 94.4 0.52 1.1E-05 36.2 9.4 98 59-194 3-102 (106)
64 PF02302 PTS_IIB: PTS system, 94.4 0.23 4.9E-06 36.3 7.2 59 61-140 1-59 (90)
65 PRK09590 celB cellobiose phosp 93.7 0.13 2.9E-06 39.4 4.8 38 59-98 1-38 (104)
66 cd05565 PTS_IIB_lactose PTS_II 93.4 0.11 2.5E-06 39.5 3.9 78 61-172 2-79 (99)
67 COG3414 SgaB Phosphotransferas 92.1 0.34 7.4E-06 36.5 4.9 40 59-99 1-42 (93)
68 cd05566 PTS_IIB_galactitol PTS 91.6 0.41 8.9E-06 35.0 4.9 35 60-95 1-35 (89)
69 PF06283 ThuA: Trehalose utili 90.8 1.7 3.7E-05 37.2 8.7 73 61-154 1-78 (217)
70 PRK13143 hisH imidazole glycer 90.7 0.72 1.6E-05 39.2 6.1 47 60-137 1-47 (200)
71 cd05564 PTS_IIB_chitobiose_lic 89.0 0.8 1.7E-05 34.4 4.5 79 61-173 1-79 (96)
72 PRK09548 PTS system ascorbate- 88.1 0.96 2.1E-05 44.9 5.6 39 56-95 503-541 (602)
73 PRK11404 putative PTS system 86.7 2.6 5.7E-05 41.0 7.6 61 59-135 3-65 (482)
74 cd05569 PTS_IIB_fructose PTS_I 86.5 3.6 7.7E-05 30.8 6.8 61 63-139 2-64 (96)
75 cd05567 PTS_IIB_mannitol PTS_I 86.2 1.8 3.9E-05 31.6 4.9 37 60-97 1-37 (87)
76 TIGR00829 FRU PTS system, fruc 86.2 3.6 7.8E-05 30.3 6.5 58 65-138 3-62 (85)
77 PRK10712 PTS system fructose-s 84.9 3.5 7.5E-05 40.9 7.6 65 58-138 102-168 (563)
78 CHL00188 hisH imidazole glycer 84.8 4.1 8.8E-05 35.1 7.2 50 59-139 1-50 (210)
79 PRK06490 glutamine amidotransf 84.6 4.3 9.4E-05 35.6 7.4 36 58-98 6-41 (239)
80 cd00133 PTS_IIB PTS_IIB: subun 84.4 2.8 6.2E-05 29.2 5.2 31 61-92 1-31 (84)
81 PRK13146 hisH imidazole glycer 84.2 2 4.3E-05 36.8 5.0 49 59-136 1-49 (209)
82 KOG1160 Fe-S oxidoreductase [E 83.5 5.5 0.00012 38.3 7.8 93 58-175 45-142 (601)
83 PRK13608 diacylglycerol glucos 83.2 1.8 3.9E-05 40.5 4.6 41 58-100 4-48 (391)
84 PRK14194 bifunctional 5,10-met 81.8 38 0.00083 30.9 12.5 41 59-100 33-73 (301)
85 PRK08250 glutamine amidotransf 81.3 7 0.00015 34.1 7.4 56 60-139 1-57 (235)
86 PRK14571 D-alanyl-alanine synt 80.2 7.2 0.00016 35.0 7.3 39 60-99 1-42 (299)
87 cd05563 PTS_IIB_ascorbate PTS_ 79.9 4.2 9.2E-05 29.3 4.7 32 61-93 1-32 (86)
88 cd05568 PTS_IIB_bgl_like PTS_I 79.7 4.1 8.8E-05 29.0 4.6 27 60-86 1-27 (85)
89 PRK13527 glutamine amidotransf 79.7 9.2 0.0002 32.3 7.4 37 77-137 16-52 (200)
90 PRK14177 bifunctional 5,10-met 79.5 48 0.001 30.0 12.3 41 59-100 33-73 (284)
91 PRK14190 bifunctional 5,10-met 78.8 51 0.0011 29.9 12.4 41 59-100 32-72 (284)
92 PRK14188 bifunctional 5,10-met 78.1 55 0.0012 29.8 12.3 42 59-101 32-73 (296)
93 KOG3179 Predicted glutamine sy 78.0 24 0.00053 30.5 9.2 74 59-154 4-89 (245)
94 PRK01175 phosphoribosylformylg 77.9 14 0.0003 33.0 8.3 55 59-137 3-57 (261)
95 PRK07053 glutamine amidotransf 77.0 6.5 0.00014 34.4 5.9 58 58-139 1-59 (234)
96 PRK05928 hemD uroporphyrinogen 76.2 7.5 0.00016 33.2 6.0 72 59-155 1-72 (249)
97 PRK06455 riboflavin synthase; 75.4 45 0.00097 27.5 10.0 93 59-176 1-102 (155)
98 PRK14182 bifunctional 5,10-met 75.3 64 0.0014 29.2 12.4 41 59-100 30-70 (282)
99 PRK06895 putative anthranilate 74.7 7.4 0.00016 32.6 5.4 52 60-138 2-54 (190)
100 PRK13170 hisH imidazole glycer 74.3 6.9 0.00015 33.1 5.2 44 60-134 1-44 (196)
101 PLN02404 6,7-dimethyl-8-ribity 73.6 8.9 0.00019 31.1 5.3 44 56-100 4-51 (141)
102 PRK14187 bifunctional 5,10-met 73.5 73 0.0016 29.0 12.2 41 59-100 32-72 (294)
103 PRK09765 PTS system 2-O-a-mann 73.5 13 0.00027 37.5 7.5 65 59-139 163-229 (631)
104 PRK10017 colanic acid biosynth 72.6 42 0.00092 32.1 10.6 48 123-176 112-159 (426)
105 PRK11914 diacylglycerol kinase 72.4 7.4 0.00016 35.1 5.2 42 56-98 5-48 (306)
106 PRK12419 riboflavin synthase s 72.0 11 0.00025 31.1 5.6 42 58-100 9-54 (158)
107 PF09314 DUF1972: Domain of un 71.9 61 0.0013 27.4 10.7 40 59-99 1-44 (185)
108 PRK09065 glutamine amidotransf 71.6 32 0.0007 30.0 8.9 75 59-154 1-84 (237)
109 PF08357 SEFIR: SEFIR domain; 71.0 9.3 0.0002 30.4 5.0 69 60-139 1-70 (150)
110 PRK11780 isoprenoid biosynthes 70.1 22 0.00047 30.8 7.3 40 59-99 1-43 (217)
111 COG2910 Putative NADH-flavin r 68.9 30 0.00066 29.6 7.6 74 60-143 1-77 (211)
112 PF04392 ABC_sub_bind: ABC tra 67.6 12 0.00025 33.5 5.4 66 56-138 128-194 (294)
113 PRK14169 bifunctional 5,10-met 66.7 1E+02 0.0022 27.9 12.5 41 59-100 30-70 (282)
114 cd01748 GATase1_IGP_Synthase T 65.0 24 0.00051 29.6 6.5 45 62-137 1-45 (198)
115 PRK09599 6-phosphogluconate de 64.9 1E+02 0.0022 27.7 11.0 111 76-205 11-121 (301)
116 cd01750 GATase1_CobQ Type 1 gl 64.6 26 0.00056 29.5 6.6 47 62-138 1-47 (194)
117 PLN02832 glutamine amidotransf 64.3 13 0.00028 33.0 4.9 46 59-136 1-46 (248)
118 PRK12490 6-phosphogluconate de 64.2 1.1E+02 0.0024 27.4 11.1 106 76-205 11-121 (299)
119 PRK13059 putative lipid kinase 63.9 20 0.00042 32.3 6.1 41 59-100 1-43 (295)
120 COG0118 HisH Glutamine amidotr 62.5 19 0.0004 31.0 5.3 59 59-151 1-59 (204)
121 COG1587 HemD Uroporphyrinogen- 62.1 36 0.00078 29.7 7.3 73 59-156 123-196 (248)
122 cd03142 GATase1_ThuA Type 1 gl 61.8 33 0.00071 29.7 6.8 70 61-155 15-86 (215)
123 PRK10792 bifunctional 5,10-met 61.7 88 0.0019 28.4 9.8 41 59-100 33-73 (285)
124 PRK00061 ribH 6,7-dimethyl-8-r 61.7 18 0.00038 29.7 4.9 42 58-100 11-56 (154)
125 PRK04155 chaperone protein Hch 61.5 95 0.002 28.1 10.0 39 60-99 50-100 (287)
126 PRK14178 bifunctional 5,10-met 60.8 1.3E+02 0.0028 27.2 12.3 41 59-100 26-66 (279)
127 PRK14168 bifunctional 5,10-met 60.7 1.3E+02 0.0029 27.4 12.5 42 59-101 33-74 (297)
128 PF00763 THF_DHG_CYH: Tetrahyd 60.3 27 0.00059 27.0 5.5 71 59-143 29-102 (117)
129 PRK01372 ddl D-alanine--D-alan 60.2 36 0.00078 30.3 7.2 40 59-99 4-46 (304)
130 PRK05788 cobalamin biosynthesi 59.7 19 0.00042 33.0 5.3 60 58-138 2-61 (315)
131 PF00885 DMRL_synthase: 6,7-di 59.6 22 0.00049 28.7 5.1 41 59-100 3-47 (144)
132 COG0287 TyrA Prephenate dehydr 59.4 26 0.00057 31.6 6.0 62 75-140 13-76 (279)
133 PRK13337 putative lipid kinase 59.4 30 0.00066 31.1 6.5 40 59-99 1-42 (304)
134 PF01695 IstB_IS21: IstB-like 59.3 10 0.00022 31.6 3.2 70 59-136 46-116 (178)
135 TIGR00114 lumazine-synth 6,7-d 59.0 21 0.00045 28.8 4.8 40 60-100 1-44 (138)
136 PRK09212 pyruvate dehydrogenas 58.9 45 0.00097 30.7 7.6 77 60-154 202-279 (327)
137 PRK07765 para-aminobenzoate sy 58.8 56 0.0012 28.0 7.8 55 60-137 1-56 (214)
138 TIGR01737 FGAM_synth_I phospho 58.4 50 0.0011 28.5 7.5 50 60-138 1-50 (227)
139 PRK05395 3-dehydroquinate dehy 58.2 26 0.00056 28.6 5.1 39 59-98 1-52 (146)
140 PRK14185 bifunctional 5,10-met 57.9 1.5E+02 0.0032 27.0 12.2 42 59-101 31-72 (293)
141 cd04962 GT1_like_5 This family 57.3 9.9 0.00022 34.1 3.0 38 60-98 1-38 (371)
142 COG2984 ABC-type uncharacteriz 57.0 29 0.00062 32.0 5.8 79 55-153 155-234 (322)
143 PRK14170 bifunctional 5,10-met 57.0 1.5E+02 0.0033 26.8 12.5 42 59-101 31-72 (284)
144 cd03147 GATase1_Ydr533c_like T 56.9 36 0.00077 29.7 6.3 30 125-154 91-123 (231)
145 COG1597 LCB5 Sphingosine kinas 56.8 32 0.00069 31.2 6.2 42 58-100 1-44 (301)
146 PRK13609 diacylglycerol glucos 56.0 17 0.00037 33.3 4.4 39 58-98 3-43 (380)
147 PF00731 AIRC: AIR carboxylase 55.7 1.1E+02 0.0025 24.9 8.9 36 60-98 1-36 (150)
148 PRK14184 bifunctional 5,10-met 54.3 1.7E+02 0.0037 26.5 12.1 41 59-100 31-71 (286)
149 PRK05282 (alpha)-aspartyl dipe 54.0 26 0.00055 30.8 4.9 57 59-137 31-88 (233)
150 cd03825 GT1_wcfI_like This fam 53.8 19 0.00041 31.9 4.3 39 60-99 1-40 (365)
151 PRK05637 anthranilate synthase 53.7 41 0.0009 28.8 6.1 33 59-97 1-33 (208)
152 PF13192 Thioredoxin_3: Thiore 53.5 40 0.00086 23.6 5.1 38 60-99 1-38 (76)
153 PRK14619 NAD(P)H-dependent gly 52.6 1.3E+02 0.0027 27.1 9.4 54 59-138 4-57 (308)
154 PRK11199 tyrA bifunctional cho 52.4 32 0.0007 32.2 5.6 60 56-140 95-154 (374)
155 CHL00144 odpB pyruvate dehydro 51.8 64 0.0014 29.7 7.4 77 59-153 201-278 (327)
156 PRK13525 glutamine amidotransf 51.5 30 0.00066 29.0 4.8 47 59-137 1-47 (189)
157 cd00578 L-fuc_L-ara-isomerases 51.4 2.2E+02 0.0049 27.1 12.9 89 60-175 1-98 (452)
158 PRK14569 D-alanyl-alanine synt 51.2 1E+02 0.0023 27.5 8.6 39 59-98 3-44 (296)
159 TIGR00872 gnd_rel 6-phosphoglu 50.6 1.7E+02 0.0036 26.3 9.8 109 76-205 11-120 (298)
160 TIGR00147 lipid kinase, YegS/R 50.2 50 0.0011 29.3 6.4 40 59-99 1-42 (293)
161 PLN02617 imidazole glycerol ph 50.0 52 0.0011 32.6 6.8 50 58-138 5-54 (538)
162 PRK00726 murG undecaprenyldiph 49.9 23 0.0005 32.1 4.2 39 59-99 1-39 (357)
163 PRK13055 putative lipid kinase 49.7 48 0.001 30.3 6.3 39 59-98 2-42 (334)
164 COG3340 PepE Peptidase E [Amin 49.3 38 0.00082 29.5 5.0 61 59-137 32-93 (224)
165 PRK08939 primosomal protein Dn 48.2 13 0.00028 33.9 2.2 69 59-135 155-224 (306)
166 cd01743 GATase1_Anthranilate_S 48.0 30 0.00065 28.6 4.2 32 88-138 21-53 (184)
167 PRK03619 phosphoribosylformylg 48.0 1E+02 0.0022 26.5 7.6 49 60-137 1-50 (219)
168 PF00289 CPSase_L_chain: Carba 47.8 38 0.00083 26.0 4.5 103 60-202 3-105 (110)
169 PF11965 DUF3479: Domain of un 47.6 27 0.00059 29.0 3.8 78 60-152 1-80 (164)
170 cd04124 RabL2 RabL2 subfamily. 47.6 1.2E+02 0.0026 23.8 7.7 46 124-174 68-113 (161)
171 PRK11574 oxidative-stress-resi 47.5 60 0.0013 26.9 6.1 101 59-174 2-108 (196)
172 COG2454 Uncharacterized conser 47.0 35 0.00076 29.3 4.4 74 58-148 127-200 (211)
173 PLN02616 tetrahydrofolate dehy 46.7 2.6E+02 0.0055 26.4 12.1 42 59-101 103-144 (364)
174 PRK11538 ribosome-associated p 46.7 59 0.0013 24.8 5.3 53 73-154 3-55 (105)
175 PLN02683 pyruvate dehydrogenas 46.6 99 0.0021 28.8 7.8 77 59-153 228-305 (356)
176 cd03129 GAT1_Peptidase_E_like 46.6 58 0.0013 27.5 5.9 71 58-150 28-98 (210)
177 PTZ00182 3-methyl-2-oxobutanat 46.2 49 0.0011 30.8 5.8 39 60-102 234-272 (355)
178 cd06318 PBP1_ABC_sugar_binding 46.1 1.5E+02 0.0034 25.2 8.7 36 61-97 1-37 (282)
179 TIGR01692 HIBADH 3-hydroxyisob 46.0 2E+02 0.0044 25.4 9.6 108 76-205 7-117 (288)
180 cd03802 GT1_AviGT4_like This f 45.6 37 0.00079 29.8 4.7 40 60-100 1-47 (335)
181 cd05212 NAD_bind_m-THF_DH_Cycl 45.0 1.1E+02 0.0024 24.5 7.0 58 56-139 25-82 (140)
182 PF02780 Transketolase_C: Tran 44.9 35 0.00075 26.2 3.9 40 59-102 9-48 (124)
183 PRK01231 ppnK inorganic polyph 44.8 41 0.00089 30.5 4.9 38 58-96 3-40 (295)
184 PF03446 NAD_binding_2: NAD bi 44.5 1.3E+02 0.0029 24.2 7.6 119 59-205 1-121 (163)
185 COG1587 HemD Uroporphyrinogen- 44.4 77 0.0017 27.6 6.5 76 75-172 11-86 (248)
186 PRK00961 H(2)-dependent methyl 44.3 2.2E+02 0.0047 26.1 9.2 30 123-154 136-166 (342)
187 PRK14186 bifunctional 5,10-met 44.0 1.1E+02 0.0023 28.0 7.4 41 59-100 32-72 (297)
188 PRK08727 hypothetical protein; 43.8 31 0.00067 29.9 3.8 59 61-136 42-101 (233)
189 PRK10712 PTS system fructose-s 43.7 36 0.00079 33.8 4.7 33 60-93 1-35 (563)
190 PF01866 Diphthamide_syn: Puta 43.7 58 0.0013 29.6 5.7 43 58-101 208-251 (307)
191 cd03805 GT1_ALG2_like This fam 43.3 34 0.00073 31.1 4.2 37 60-97 1-38 (392)
192 PRK10125 putative glycosyl tra 43.3 49 0.0011 31.1 5.4 40 60-100 1-41 (405)
193 PRK02645 ppnK inorganic polyph 43.3 44 0.00096 30.4 4.9 39 58-97 2-40 (305)
194 PRK00094 gpsA NAD(P)H-dependen 42.8 1.4E+02 0.0031 26.5 8.2 83 59-154 1-91 (325)
195 PF13380 CoA_binding_2: CoA bi 42.8 98 0.0021 23.7 6.2 107 60-202 1-108 (116)
196 TIGR00322 diphth2_R diphthamid 42.8 58 0.0013 30.1 5.6 42 59-101 232-274 (332)
197 PF03575 Peptidase_S51: Peptid 42.8 21 0.00045 28.8 2.4 41 78-136 3-43 (154)
198 PRK06545 prephenate dehydrogen 42.7 2.8E+02 0.006 25.6 12.7 70 76-154 11-80 (359)
199 PRK00211 sulfur relay protein 42.6 67 0.0015 24.9 5.2 40 59-100 1-43 (119)
200 PRK14167 bifunctional 5,10-met 42.6 1.1E+02 0.0024 27.9 7.3 42 59-101 31-72 (297)
201 PRK05642 DNA replication initi 42.5 31 0.00068 29.9 3.7 57 61-134 46-103 (234)
202 cd03146 GAT1_Peptidase_E Type 42.5 1.3E+02 0.0029 25.5 7.6 67 59-150 31-98 (212)
203 PF01220 DHquinase_II: Dehydro 42.5 18 0.0004 29.2 2.0 75 60-152 1-89 (140)
204 cd01741 GATase1_1 Subgroup of 42.2 82 0.0018 25.9 6.1 57 61-139 1-57 (188)
205 cd03148 GATase1_EcHsp31_like T 42.0 77 0.0017 27.6 6.0 21 78-99 29-49 (232)
206 TIGR01133 murG undecaprenyldip 41.9 38 0.00083 30.2 4.3 35 60-96 1-35 (348)
207 PRK12377 putative replication 41.7 19 0.00042 31.8 2.2 70 60-136 101-171 (248)
208 cd01080 NAD_bind_m-THF_DH_Cycl 41.5 1E+02 0.0022 25.5 6.4 58 57-140 42-99 (168)
209 PRK13054 lipid kinase; Reviewe 41.4 75 0.0016 28.5 6.1 39 58-98 2-40 (300)
210 COG1810 Uncharacterized protei 40.4 46 0.00099 29.0 4.2 14 59-72 1-14 (224)
211 PRK13015 3-dehydroquinate dehy 40.1 77 0.0017 25.9 5.2 79 59-154 1-92 (146)
212 cd01866 Rab2 Rab2 subfamily. 39.5 1.2E+02 0.0027 23.9 6.6 48 123-174 71-118 (168)
213 TIGR01815 TrpE-clade3 anthrani 39.5 2.1E+02 0.0046 29.4 9.5 36 58-99 515-550 (717)
214 PRK14180 bifunctional 5,10-met 39.3 1.4E+02 0.003 27.0 7.4 42 59-101 31-72 (282)
215 PRK11892 pyruvate dehydrogenas 39.3 1.4E+02 0.0031 28.9 7.9 77 59-153 340-417 (464)
216 cd04147 Ras_dva Ras-dva subfam 39.2 2E+02 0.0044 23.6 8.0 47 125-174 67-113 (198)
217 PF03807 F420_oxidored: NADP o 39.0 21 0.00044 25.9 1.7 60 76-140 10-73 (96)
218 cd01452 VWA_26S_proteasome_sub 38.8 51 0.0011 27.9 4.3 41 59-100 107-147 (187)
219 PRK15461 NADH-dependent gamma- 38.6 2.9E+02 0.0063 24.7 12.6 121 59-205 1-122 (296)
220 COG0296 GlgB 1,4-alpha-glucan 38.3 1.2E+02 0.0027 30.6 7.4 72 62-155 144-224 (628)
221 cd06312 PBP1_ABC_sugar_binding 38.2 1.5E+02 0.0031 25.4 7.3 38 61-99 1-40 (271)
222 PRK10474 putative PTS system f 38.2 96 0.0021 22.7 5.2 47 76-138 2-48 (88)
223 cd04106 Rab23_lke Rab23-like s 37.7 1.5E+02 0.0032 23.0 6.7 46 124-174 70-115 (162)
224 PRK11559 garR tartronate semia 37.7 2.9E+02 0.0062 24.4 10.6 120 59-204 2-122 (296)
225 PRK14179 bifunctional 5,10-met 37.6 3.1E+02 0.0068 24.8 13.8 41 59-100 32-72 (284)
226 PRK08116 hypothetical protein; 37.6 44 0.00096 29.7 3.9 69 61-134 115-184 (268)
227 PRK09189 uroporphyrinogen-III 37.2 62 0.0013 27.8 4.7 21 128-155 170-190 (240)
228 PF10087 DUF2325: Uncharacteri 37.1 1.7E+02 0.0036 21.5 8.4 39 123-171 43-81 (97)
229 PRK14174 bifunctional 5,10-met 37.1 1.3E+02 0.0028 27.4 6.8 41 59-100 31-71 (295)
230 cd06354 PBP1_BmpA_PnrA_like Pe 37.1 1.8E+02 0.0039 25.0 7.7 37 61-98 1-41 (265)
231 PRK08367 porA pyruvate ferredo 37.0 1.6E+02 0.0036 27.8 7.8 67 62-147 265-331 (394)
232 PRK05752 uroporphyrinogen-III 36.9 57 0.0012 28.4 4.5 27 123-156 50-76 (255)
233 cd06578 HemD Uroporphyrinogen- 36.9 76 0.0016 26.5 5.2 60 77-155 10-69 (239)
234 COG0512 PabA Anthranilate/para 36.8 1.5E+02 0.0033 25.3 6.7 69 59-152 1-73 (191)
235 PLN02605 monogalactosyldiacylg 36.6 47 0.001 30.7 4.1 38 62-100 1-41 (382)
236 PRK00861 putative lipid kinase 36.5 1E+02 0.0022 27.6 6.1 39 59-99 2-42 (300)
237 PRK14172 bifunctional 5,10-met 36.3 1.3E+02 0.0027 27.3 6.6 40 60-100 33-72 (278)
238 smart00177 ARF ARF-like small 36.2 1.8E+02 0.0039 23.4 7.1 46 126-174 78-123 (175)
239 PRK06444 prephenate dehydrogen 36.1 66 0.0014 27.4 4.6 28 60-93 1-28 (197)
240 cd01865 Rab3 Rab3 subfamily. 35.7 1.6E+02 0.0035 23.1 6.7 46 124-173 69-114 (165)
241 PF11823 DUF3343: Protein of u 35.7 43 0.00094 23.4 2.9 37 59-101 1-37 (73)
242 PF12062 HSNSD: heparan sulfat 35.6 4.1E+02 0.009 26.0 10.1 19 56-74 56-74 (487)
243 PRK14193 bifunctional 5,10-met 35.4 1.5E+02 0.0032 26.9 6.9 42 59-101 32-73 (284)
244 smart00175 RAB Rab subfamily o 35.2 2E+02 0.0044 22.1 7.1 47 124-174 68-114 (164)
245 PRK15083 PTS system mannitol-s 35.2 59 0.0013 32.8 4.7 38 59-97 378-416 (639)
246 PRK13141 hisH imidazole glycer 35.1 80 0.0017 26.6 5.0 45 62-137 2-46 (205)
247 PF13458 Peripla_BP_6: Peripla 35.1 1.7E+02 0.0037 25.8 7.4 90 58-174 134-226 (343)
248 cd06388 PBP1_iGluR_AMPA_GluR4 34.6 87 0.0019 29.0 5.5 39 58-99 123-161 (371)
249 PRK14166 bifunctional 5,10-met 34.6 1.5E+02 0.0033 26.8 6.8 41 59-100 30-70 (282)
250 cd03820 GT1_amsD_like This fam 34.6 65 0.0014 27.6 4.5 39 61-100 1-41 (348)
251 cd04121 Rab40 Rab40 subfamily. 34.5 2.2E+02 0.0047 23.6 7.5 45 124-173 74-118 (189)
252 PRK14189 bifunctional 5,10-met 34.3 3.6E+02 0.0077 24.5 12.8 42 59-101 32-73 (285)
253 PRK07952 DNA replication prote 34.1 51 0.0011 29.0 3.7 73 61-139 100-173 (244)
254 cd04153 Arl5_Arl8 Arl5/Arl8 su 34.0 2.1E+02 0.0046 22.8 7.2 48 124-174 78-125 (174)
255 PRK02261 methylaspartate mutas 34.0 2.4E+02 0.0052 22.4 9.0 78 59-155 1-79 (137)
256 PF02153 PDH: Prephenate dehyd 33.9 3.1E+02 0.0066 24.0 8.7 63 123-202 40-102 (258)
257 COG1484 DnaC DNA replication p 33.9 37 0.0008 30.0 2.8 71 59-137 104-176 (254)
258 COG3360 Uncharacterized conser 33.9 68 0.0015 22.7 3.5 39 59-99 6-44 (71)
259 PF13460 NAD_binding_10: NADH( 33.9 60 0.0013 26.1 3.9 75 76-155 10-86 (183)
260 COG2242 CobL Precorrin-6B meth 33.9 2.3E+02 0.0049 24.1 7.3 62 123-202 97-159 (187)
261 CHL00197 carA carbamoyl-phosph 33.7 93 0.002 29.4 5.5 31 59-97 192-222 (382)
262 PRK13566 anthranilate synthase 33.6 2.3E+02 0.0051 29.1 8.7 36 58-99 525-560 (720)
263 PLN02871 UDP-sulfoquinovose:DA 33.5 2.2E+02 0.0047 27.0 8.2 41 58-99 57-101 (465)
264 cd01867 Rab8_Rab10_Rab13_like 33.5 2.3E+02 0.005 22.2 7.3 47 123-173 70-116 (167)
265 PRK14191 bifunctional 5,10-met 33.3 1.9E+02 0.0042 26.2 7.3 41 59-100 31-71 (285)
266 TIGR00873 gnd 6-phosphoglucona 33.2 4.6E+02 0.01 25.4 12.2 146 76-253 10-159 (467)
267 PRK06835 DNA replication prote 33.2 50 0.0011 30.5 3.6 71 59-135 182-253 (329)
268 PRK14866 hypothetical protein; 33.2 1.1E+02 0.0023 29.7 5.9 25 60-84 1-25 (451)
269 PF09651 Cas_APE2256: CRISPR-a 33.2 72 0.0016 25.4 4.1 37 62-99 24-60 (136)
270 COG1927 Mtd Coenzyme F420-depe 33.1 3.3E+02 0.0073 23.8 11.7 94 60-174 3-96 (277)
271 PRK14176 bifunctional 5,10-met 32.8 1.8E+02 0.0038 26.5 6.9 41 59-100 38-78 (287)
272 PLN02958 diacylglycerol kinase 32.8 1.1E+02 0.0023 29.8 6.0 40 58-98 110-152 (481)
273 cd03169 GATase1_PfpI_1 Type 1 32.3 2.3E+02 0.005 23.0 7.2 40 127-173 75-116 (180)
274 cd04951 GT1_WbdM_like This fam 32.3 79 0.0017 27.8 4.7 38 61-99 1-39 (360)
275 PLN02897 tetrahydrofolate dehy 32.2 2.1E+02 0.0046 26.7 7.5 41 59-100 86-126 (345)
276 PRK00536 speE spermidine synth 32.2 2.5E+02 0.0054 25.1 7.8 115 56-194 70-190 (262)
277 cd03132 GATase1_catalase Type 32.1 1.6E+02 0.0035 22.8 6.0 99 60-173 2-103 (142)
278 PLN02516 methylenetetrahydrofo 31.9 1.7E+02 0.0037 26.8 6.7 41 59-100 39-79 (299)
279 PRK14173 bifunctional 5,10-met 31.6 4E+02 0.0086 24.2 11.0 42 59-101 29-70 (287)
280 PF01820 Dala_Dala_lig_N: D-al 31.6 1.1E+02 0.0025 23.4 4.9 40 60-100 1-43 (117)
281 PF02410 Oligomerisation: Olig 31.5 83 0.0018 23.5 4.0 40 76-140 1-40 (100)
282 PRK01966 ddl D-alanyl-alanine 31.4 1.1E+02 0.0023 27.9 5.5 40 59-99 3-45 (333)
283 PRK10834 vancomycin high tempe 31.1 83 0.0018 27.8 4.5 68 124-196 40-110 (239)
284 TIGR01855 IMP_synth_hisH imida 30.9 81 0.0018 26.4 4.3 45 62-137 1-45 (196)
285 PRK14192 bifunctional 5,10-met 30.8 4E+02 0.0086 24.0 12.0 41 59-100 33-73 (283)
286 PRK13181 hisH imidazole glycer 30.5 1.1E+02 0.0024 25.6 5.0 45 62-137 2-46 (199)
287 PF02882 THF_DHG_CYH_C: Tetrah 30.3 1.5E+02 0.0032 24.4 5.6 59 56-141 33-92 (160)
288 cd03812 GT1_CapH_like This fam 30.3 3.3E+02 0.0071 23.9 8.4 39 61-100 1-40 (358)
289 PF00117 GATase: Glutamine ami 30.2 1.9E+02 0.0041 23.6 6.4 72 70-174 7-79 (192)
290 COG0240 GpsA Glycerol-3-phosph 30.1 94 0.002 28.8 4.8 81 59-148 1-92 (329)
291 cd01740 GATase1_FGAR_AT Type 1 30.0 2.9E+02 0.0062 24.0 7.7 40 74-137 13-52 (238)
292 PRK14181 bifunctional 5,10-met 29.8 1.8E+02 0.004 26.4 6.5 41 59-100 26-66 (287)
293 COG0394 Wzb Protein-tyrosine-p 29.5 65 0.0014 25.8 3.3 26 58-86 1-28 (139)
294 cd01868 Rab11_like Rab11-like. 29.5 2.7E+02 0.0058 21.6 7.1 46 124-173 71-116 (165)
295 PRK06975 bifunctional uroporph 29.4 1.2E+02 0.0026 30.7 5.9 28 123-157 50-77 (656)
296 PLN02225 1-deoxy-D-xylulose-5- 29.3 2.4E+02 0.0052 29.0 7.9 77 60-154 568-644 (701)
297 PRK06928 pyrroline-5-carboxyla 29.3 3.8E+02 0.0082 23.7 8.5 25 124-154 60-84 (277)
298 PLN02234 1-deoxy-D-xylulose-5- 29.0 4.6E+02 0.0099 26.7 9.8 76 60-154 545-621 (641)
299 cd06367 PBP1_iGluR_NMDA N-term 29.0 4.1E+02 0.0089 23.9 9.0 31 58-91 135-166 (362)
300 PRK07119 2-ketoisovalerate fer 28.8 1.1E+02 0.0023 28.5 5.1 38 60-102 247-285 (352)
301 cd00877 Ran Ran (Ras-related n 28.6 3E+02 0.0064 21.8 8.3 45 124-173 68-112 (166)
302 cd04158 ARD1 ARD1 subfamily. 28.6 3E+02 0.0064 21.8 7.6 48 124-174 62-109 (169)
303 cd04138 H_N_K_Ras_like H-Ras/N 28.6 2.7E+02 0.0058 21.2 7.9 48 124-174 68-115 (162)
304 PLN00223 ADP-ribosylation fact 28.4 2.3E+02 0.005 23.0 6.6 47 125-174 81-127 (181)
305 COG1736 DPH2 Diphthamide synth 28.4 1.6E+02 0.0034 27.6 5.9 42 58-100 236-278 (347)
306 COG0054 RibH Riboflavin syntha 28.2 1.4E+02 0.003 24.5 4.9 42 58-100 11-56 (152)
307 PHA03075 glutaredoxin-like pro 28.2 1E+02 0.0023 24.2 4.0 27 59-86 1-28 (123)
308 TIGR01505 tartro_sem_red 2-hyd 28.1 4.2E+02 0.0091 23.3 9.1 110 76-204 10-119 (291)
309 PRK03708 ppnK inorganic polyph 28.0 1E+02 0.0022 27.6 4.7 36 60-96 1-36 (277)
310 PRK02649 ppnK inorganic polyph 27.9 1.1E+02 0.0024 28.0 4.8 37 59-96 1-37 (305)
311 PLN02204 diacylglycerol kinase 27.8 1.6E+02 0.0034 29.7 6.2 77 57-151 157-239 (601)
312 COG1419 FlhF Flagellar GTP-bin 27.7 5.5E+02 0.012 24.6 9.8 95 59-154 202-310 (407)
313 PRK08818 prephenate dehydrogen 27.6 1.1E+02 0.0023 28.8 4.8 17 123-139 46-62 (370)
314 PF01113 DapB_N: Dihydrodipico 27.6 2.8E+02 0.0062 21.2 7.3 39 124-176 63-101 (124)
315 smart00178 SAR Sar1p-like memb 27.3 2.9E+02 0.0062 22.4 7.0 48 124-174 80-127 (184)
316 TIGR03682 arCOG04112 arCOG0411 27.2 1.7E+02 0.0036 26.8 5.9 42 59-101 212-254 (308)
317 cd04101 RabL4 RabL4 (Rab-like4 27.2 2.3E+02 0.0051 21.9 6.3 46 124-174 71-116 (164)
318 cd03030 GRX_SH3BGR Glutaredoxi 27.1 1.4E+02 0.003 22.1 4.5 36 63-99 2-40 (92)
319 TIGR00888 guaA_Nterm GMP synth 27.0 3.5E+02 0.0077 22.1 7.8 25 70-99 8-32 (188)
320 cd06389 PBP1_iGluR_AMPA_GluR2 27.0 2.7E+02 0.0059 25.6 7.4 38 58-98 117-154 (370)
321 cd06360 PBP1_alkylbenzenes_lik 26.9 3.7E+02 0.008 23.6 8.2 33 59-93 134-166 (336)
322 PRK14183 bifunctional 5,10-met 26.9 4.8E+02 0.01 23.6 11.4 42 59-101 31-72 (281)
323 TIGR03609 S_layer_CsaB polysac 26.9 4.4E+02 0.0095 23.2 8.9 97 70-175 12-109 (298)
324 PF03345 DDOST_48kD: Oligosacc 26.9 5.8E+02 0.012 24.5 11.1 105 62-204 1-109 (423)
325 PRK05479 ketol-acid reductoiso 26.8 4.7E+02 0.01 24.2 8.8 67 58-138 16-83 (330)
326 cd03795 GT1_like_4 This family 26.8 89 0.0019 27.5 4.1 39 61-100 1-42 (357)
327 KOG2884 26S proteasome regulat 26.7 1.3E+02 0.0028 26.4 4.7 42 58-100 106-147 (259)
328 TIGR01823 PabB-fungal aminodeo 26.4 6E+02 0.013 26.3 10.3 57 58-135 4-60 (742)
329 COG1763 MobB Molybdopterin-gua 26.3 1.3E+02 0.0029 24.8 4.6 73 59-143 1-74 (161)
330 PRK14864 putative biofilm stre 26.2 1.6E+02 0.0034 22.6 4.7 40 58-98 47-87 (104)
331 PTZ00142 6-phosphogluconate de 26.1 6.1E+02 0.013 24.6 12.4 146 76-253 12-162 (470)
332 PF01210 NAD_Gly3P_dh_N: NAD-d 26.1 55 0.0012 26.3 2.4 27 124-156 65-91 (157)
333 KOG3916 UDP-Gal:glucosylcerami 26.0 1.8E+02 0.0038 27.3 5.7 92 88-201 214-305 (372)
334 TIGR00412 redox_disulf_2 small 26.0 1.4E+02 0.0031 20.7 4.3 34 65-99 5-38 (76)
335 PF09822 ABC_transp_aux: ABC-t 25.9 2.3E+02 0.005 24.8 6.5 67 124-201 192-266 (271)
336 cd06380 PBP1_iGluR_AMPA N-term 25.8 4.3E+02 0.0094 24.0 8.6 37 58-97 125-163 (382)
337 cd01968 Nitrogenase_NifE_I Nit 25.5 5.3E+02 0.012 24.1 9.3 120 59-201 61-189 (410)
338 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 25.5 3.2E+02 0.007 21.2 7.2 46 124-173 70-115 (166)
339 PRK09288 purT phosphoribosylgl 25.5 2.3E+02 0.0049 26.2 6.7 39 55-100 8-46 (395)
340 KOG0093 GTPase Rab3, small G p 25.5 3.4E+02 0.0073 22.6 6.7 107 58-173 20-134 (193)
341 PRK06893 DNA replication initi 25.4 88 0.0019 26.9 3.6 38 59-98 38-76 (229)
342 PLN02335 anthranilate synthase 25.3 2.9E+02 0.0062 23.7 6.8 34 59-98 18-51 (222)
343 PRK10307 putative glycosyl tra 25.2 91 0.002 28.8 4.0 38 60-98 1-41 (412)
344 cd06363 PBP1_Taste_receptor Li 25.2 3.4E+02 0.0073 25.2 7.8 35 58-94 175-209 (410)
345 cd06316 PBP1_ABC_sugar_binding 25.1 4.3E+02 0.0093 22.8 8.1 34 61-95 1-35 (294)
346 TIGR02069 cyanophycinase cyano 25.0 2.3E+02 0.0051 24.9 6.3 63 59-137 28-91 (250)
347 PRK06921 hypothetical protein; 24.8 65 0.0014 28.6 2.7 67 60-136 117-185 (266)
348 cd06368 PBP1_iGluR_non_NMDA_li 24.8 4.7E+02 0.01 22.8 8.9 35 59-96 127-161 (324)
349 COG1435 Tdk Thymidine kinase [ 24.7 1.4E+02 0.003 25.7 4.5 39 58-98 2-41 (201)
350 cd04140 ARHI_like ARHI subfami 24.6 3.4E+02 0.0074 21.2 8.6 50 124-174 68-117 (165)
351 PRK13142 hisH imidazole glycer 24.6 2.3E+02 0.005 24.0 5.9 45 62-137 2-46 (192)
352 PLN00123 isocitrate dehydrogen 24.6 2.8E+02 0.0061 26.1 6.9 66 59-141 30-100 (360)
353 PRK08084 DNA replication initi 24.5 1.1E+02 0.0023 26.5 4.0 37 61-99 46-83 (235)
354 cd06348 PBP1_ABC_ligand_bindin 24.5 3.3E+02 0.0071 24.2 7.4 36 58-94 135-170 (344)
355 COG1736 DPH2 Diphthamide synth 24.4 5.6E+02 0.012 24.0 8.8 125 59-200 122-271 (347)
356 PRK14568 vanB D-alanine--D-lac 24.3 1.7E+02 0.0037 26.7 5.5 40 59-99 3-45 (343)
357 KOG2728 Uncharacterized conser 24.2 90 0.002 27.9 3.4 34 137-176 8-41 (302)
358 PF04127 DFP: DNA / pantothena 24.2 45 0.00098 28.1 1.5 70 73-144 28-98 (185)
359 PRK14806 bifunctional cyclohex 24.2 7.6E+02 0.017 25.0 11.3 80 59-155 3-84 (735)
360 PRK08181 transposase; Validate 24.2 60 0.0013 29.0 2.4 70 59-136 105-175 (269)
361 PRK11200 grxA glutaredoxin 1; 24.0 2.5E+02 0.0053 19.7 5.3 40 60-99 1-40 (85)
362 PRK14025 multifunctional 3-iso 23.9 2.4E+02 0.0052 26.1 6.3 82 59-152 1-85 (330)
363 TIGR00465 ilvC ketol-acid redu 23.8 5.6E+02 0.012 23.3 8.8 67 59-139 3-70 (314)
364 cd04955 GT1_like_6 This family 23.7 86 0.0019 27.7 3.4 39 61-100 1-43 (363)
365 PF00496 SBP_bac_5: Bacterial 23.6 2.2E+02 0.0049 25.5 6.2 72 62-152 296-368 (374)
366 PRK03372 ppnK inorganic polyph 23.5 1.6E+02 0.0034 27.0 5.0 38 58-96 4-41 (306)
367 cd03134 GATase1_PfpI_like A ty 23.5 3.7E+02 0.008 21.2 7.0 96 61-173 1-102 (165)
368 PLN02948 phosphoribosylaminoim 23.5 4.6E+02 0.01 26.1 8.7 37 57-100 20-56 (577)
369 PRK05339 PEP synthetase regula 23.3 2.3E+02 0.0051 25.4 5.9 33 64-99 7-41 (269)
370 PRK14175 bifunctional 5,10-met 23.3 2.2E+02 0.0048 25.8 5.9 57 55-137 154-210 (286)
371 PRK04539 ppnK inorganic polyph 23.3 1.4E+02 0.003 27.1 4.6 38 58-96 4-41 (296)
372 cd00995 PBP2_NikA_DppA_OppA_li 23.1 2.7E+02 0.0059 25.8 6.8 38 60-98 323-360 (466)
373 PLN02582 1-deoxy-D-xylulose-5- 23.1 3.5E+02 0.0076 27.7 7.8 76 60-153 544-619 (677)
374 PF01380 SIS: SIS domain SIS d 23.0 1.1E+02 0.0023 23.1 3.3 37 59-97 52-88 (131)
375 PF00465 Fe-ADH: Iron-containi 22.7 1.2E+02 0.0027 27.9 4.3 38 60-99 22-60 (366)
376 cd04161 Arl2l1_Arl13_like Arl2 22.5 3.9E+02 0.0085 21.1 7.1 48 124-174 62-109 (167)
377 cd03808 GT1_cap1E_like This fa 22.5 1.4E+02 0.0031 25.5 4.5 38 61-100 1-38 (359)
378 PF00781 DAGK_cat: Diacylglyce 22.5 3.2E+02 0.007 20.8 6.1 36 61-99 1-38 (130)
379 PLN02712 arogenate dehydrogena 22.5 4.4E+02 0.0095 26.8 8.4 78 56-154 49-128 (667)
380 COG2085 Predicted dinucleotide 22.3 2.7E+02 0.0058 24.2 5.9 83 59-153 1-83 (211)
381 PF00071 Ras: Ras family; Int 22.3 3.7E+02 0.0079 20.7 6.9 46 124-173 67-112 (162)
382 PF13344 Hydrolase_6: Haloacid 22.2 60 0.0013 24.2 1.7 42 145-199 17-58 (101)
383 PRK13152 hisH imidazole glycer 22.2 1.9E+02 0.0041 24.2 5.0 45 62-137 2-46 (201)
384 PRK00074 guaA GMP synthase; Re 22.2 2.3E+02 0.005 27.7 6.2 34 59-98 3-36 (511)
385 cd04107 Rab32_Rab38 Rab38/Rab3 22.1 4.4E+02 0.0096 21.5 8.1 51 124-174 69-119 (201)
386 cd01537 PBP1_Repressors_Sugar_ 22.0 4.3E+02 0.0094 21.6 7.3 38 61-99 1-39 (264)
387 cd03130 GATase1_CobB Type 1 gl 22.0 1.3E+02 0.0028 25.3 3.9 11 126-136 38-48 (198)
388 cd00316 Oxidoreductase_nitroge 21.9 6.2E+02 0.014 23.2 8.9 123 59-201 55-184 (399)
389 PRK07168 bifunctional uroporph 21.8 1.6E+02 0.0035 28.6 5.0 27 123-156 295-321 (474)
390 PRK08655 prephenate dehydrogen 21.7 2.2E+02 0.0048 27.2 5.9 78 60-154 1-78 (437)
391 PF13439 Glyco_transf_4: Glyco 21.5 87 0.0019 24.2 2.6 30 69-99 10-39 (177)
392 PRK09273 hypothetical protein; 21.4 1.3E+02 0.0028 26.1 3.7 37 60-99 1-38 (211)
393 PRK13626 transcriptional regul 21.4 2.6E+02 0.0056 27.4 6.5 37 61-98 404-440 (552)
394 cd03807 GT1_WbnK_like This fam 21.3 5.2E+02 0.011 22.0 8.0 38 61-99 1-39 (365)
395 PF09960 DUF2194: Uncharacteri 21.3 3.6E+02 0.0079 27.1 7.4 77 58-153 52-128 (585)
396 COG0693 ThiJ Putative intracel 21.2 1.9E+02 0.0041 23.6 4.8 103 59-173 2-107 (188)
397 COG4551 Predicted protein tyro 21.2 35 0.00076 25.7 0.2 18 117-135 40-57 (109)
398 PRK03378 ppnK inorganic polyph 21.2 1.9E+02 0.0042 26.1 5.1 38 58-96 4-41 (292)
399 cd03811 GT1_WabH_like This fam 21.1 1.2E+02 0.0027 25.8 3.7 39 61-100 1-40 (353)
400 PRK05665 amidotransferase; Pro 21.1 5.6E+02 0.012 22.3 8.0 14 125-138 54-68 (240)
401 cd06362 PBP1_mGluR Ligand bind 21.0 4.5E+02 0.0098 24.6 7.9 32 59-93 172-204 (452)
402 cd06342 PBP1_ABC_LIVBP_like Ty 20.8 3.4E+02 0.0073 23.8 6.6 36 59-96 135-170 (334)
403 cd03784 GT1_Gtf_like This fami 20.7 1.4E+02 0.003 27.4 4.2 38 60-99 1-38 (401)
404 cd03823 GT1_ExpE7_like This fa 20.6 1.4E+02 0.0029 25.9 4.0 39 61-100 1-43 (359)
405 cd04127 Rab27A Rab27a subfamil 20.6 4.1E+02 0.009 20.9 6.6 47 124-173 82-128 (180)
406 PRK08659 2-oxoglutarate ferred 20.5 1.9E+02 0.0041 27.1 5.1 38 60-102 274-312 (376)
407 PF13685 Fe-ADH_2: Iron-contai 20.5 94 0.002 27.5 2.8 35 58-96 18-53 (250)
408 PF13793 Pribosyltran_N: N-ter 20.5 2.3E+02 0.0049 21.9 4.7 48 74-138 10-57 (116)
409 PF02288 Dehydratase_MU: Dehyd 20.3 93 0.002 24.1 2.4 35 64-99 6-40 (112)
410 PRK13304 L-aspartate dehydroge 20.3 5.9E+02 0.013 22.3 9.7 61 126-202 59-120 (265)
411 PRK06217 hypothetical protein; 20.3 1.6E+02 0.0035 24.0 4.1 26 59-85 1-26 (183)
412 TIGR01019 sucCoAalpha succinyl 20.3 6.4E+02 0.014 22.7 9.9 63 123-202 55-120 (286)
413 PRK08811 uroporphyrinogen-III 20.3 86 0.0019 27.8 2.6 16 123-138 64-79 (266)
414 PLN02735 carbamoyl-phosphate s 20.2 7.1E+02 0.015 27.1 9.8 41 58-99 22-67 (1102)
415 PF02662 FlpD: Methyl-viologen 20.2 4.2E+02 0.0091 20.6 7.1 13 127-139 51-64 (124)
416 PF04908 SH3BGR: SH3-binding, 20.1 1.9E+02 0.0041 21.9 4.0 37 62-99 3-41 (99)
417 cd01971 Nitrogenase_VnfN_like 20.1 6.9E+02 0.015 23.6 8.9 124 59-201 61-191 (427)
418 PF13507 GATase_5: CobB/CobQ-l 20.1 1.1E+02 0.0023 27.4 3.1 59 60-142 2-60 (259)
419 cd06393 PBP1_iGluR_Kainate_Glu 20.0 5.4E+02 0.012 23.5 8.0 37 58-97 138-174 (384)
No 1
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=4.9e-44 Score=289.24 Aligned_cols=200 Identities=64% Similarity=1.066 Sum_probs=193.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|.||.||+||.+||...||++++++++++ |-+.++++++++++++.++.+..++++++++.++.+.|.+||+++||.|+
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a-~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESA-GGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhcc-CCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 67999999999999999999999999994 44999999999999999999999998889999999999999999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc-cCCccccccccC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT-FGAGMFKMDSIR 217 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~-~~~~~~~~~~~~ 217 (260)
.||++|+++|.|+|++..||..+.|.||++++|.|+|..+||||.++++.+..|.||||++||.||. ++++|++|+.++
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~ 159 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVH 159 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999989999999999999999999999999998 889999999999
Q ss_pred CCcccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 218 GGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 218 ~g~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
||++||++.++| ||+|.|++.||+.++.+|+.+++++++|++
T Consensus 160 Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 160 GGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred CCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999975
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=2.5e-38 Score=270.35 Aligned_cols=196 Identities=45% Similarity=0.816 Sum_probs=174.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+||+|||+|++|||++||++|++++++..|++++++++.+..+..|..+..|.. +++.+.++.+++.+||+||||||+|
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKT-DQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCc-ccCCccCCHHHHHHCCEEEEEeccc
Confidence 489999999999999999999999987349999999999888888988887763 2334444567899999999999999
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCC
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGG 219 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g 219 (260)
+++++++||+|+|++..+|..+.|.||++++|+++||..|+++.++..+...|.++||++|+.+|. +...+.++.+++|
T Consensus 80 ~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~-~~~~~~~~~~~gg 158 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYA-AQEQMGVDEVRGG 158 (197)
T ss_pred ccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCcc-cccccccccccCC
Confidence 999999999999999999987789999999999999987999999999999999999999998886 5666777788999
Q ss_pred cccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 220 SPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 220 ~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
++||+..+.+ +++.+|++.+++.|+.||+|+|+++++|
T Consensus 159 ~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 159 SPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988765 6778999999999999999999999875
No 3
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=6.8e-38 Score=268.16 Aligned_cols=198 Identities=44% Similarity=0.743 Sum_probs=170.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCC-CCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPR-DDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~-~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|+||+|||+|++|||++||++|+++++++.|++++++++.+..+..|..+..|... .+.+ .+.+++.+||+||||||
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPV--ATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCc--cCHHHHHhCCEEEEEec
Confidence 68999999999999999999999999865799999999987776666554444321 2222 23688999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
+|+|+++++||+|+|++..+|..+.|.||++++|+++||.+|+++.++..+...|.++||++|+.+|. +.+.+..+.++
T Consensus 79 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~-~~~~~~~~~~~ 157 (200)
T PRK03767 79 TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYA-FQGQMDVDEVT 157 (200)
T ss_pred ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCc-ccccccccccc
Confidence 99999999999999999999987789999999999999988899999999999999999999998876 45555566788
Q ss_pred CCcccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 218 GGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 218 ~g~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
+|++||+..+.+ +++.+|+++|++.|+.||+|+++++++|+.
T Consensus 158 ~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 158 GGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987764 677899999999999999999999999863
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.97 E-value=5e-30 Score=220.60 Aligned_cols=196 Identities=39% Similarity=0.602 Sum_probs=162.0
Q ss_pred CeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC------CCCCcccccHhhhhhcCE
Q 024934 60 LKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP------RDDDIPEISAADLVEADG 131 (260)
Q Consensus 60 ~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~------~~dd~~~i~~~~l~~AD~ 131 (260)
|||+.|++|+ +|||..|++++++++++ .|+|+++++|.++.+.+|.+|..|.. ++|++.++ .++|.+||+
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~-~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i-~~~l~~aD~ 78 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEE-AGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEI-YEKLLEADG 78 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHH-cCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHH-HHHHHHCCE
Confidence 5677777775 69999999999999999 79999999999997777777776653 45667888 899999999
Q ss_pred EEEEccccCCCchHHHHHHHHH-hcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccC-Cc
Q 024934 132 FLFGFPTRYGCMAAQMKAFFDS-TGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFG-AG 209 (260)
Q Consensus 132 II~GsPtY~g~~~~~mK~flD~-~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~-~~ 209 (260)
||||||||||+++++||+|||| +..+|....|++|+++.|++.+.++|+++.++..+..++.+++|.+++.+|... .+
T Consensus 79 iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~g 158 (207)
T COG0655 79 IIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGNAVVG 158 (207)
T ss_pred EEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEecccccccccC
Confidence 9999999999999999999999 778888788999999999999998888888889999999999999999877521 11
Q ss_pred cccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 210 MFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 210 ~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
. ..+...++.+++....+...-..+.+.+++.++.++++.++.+.++.
T Consensus 159 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 159 S-GVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred c-ccccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 0 12346678888877655422223788889999999999998877654
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.93 E-value=1.8e-24 Score=174.70 Aligned_cols=138 Identities=25% Similarity=0.329 Sum_probs=114.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||+|||+|++|||++||++|++++++ .|++++++++.+. +..++.+||+|||||||
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~~~~~d~iilgsPt 58 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKE-AGAEVTIKHVADA---------------------KVEDVLEADAVAFGSPS 58 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHh-CCCeEEEEECCcC---------------------CHHHHhhCCEEEEECCC
Confidence 7899999999999999999999999988 8999999998763 24578999999999999
Q ss_pred cCCCch--HHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 139 RYGCMA--AQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 139 Y~g~~~--~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|+++++ .+|+.|+|++..+ .++||++++|+|+||..+. .+..+...+...|+.+++. +.
T Consensus 59 y~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~g~~~~~~-~~----------- 119 (141)
T PRK05569 59 MDNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDNGE---FMKLWKDRMKDYGFNVIGD-LA----------- 119 (141)
T ss_pred cCCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHCCCeEeee-EE-----------
Confidence 999863 6899999998543 4689999999999985333 3456777788889888763 21
Q ss_pred CCCcccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAGDGTREPSETELALAEHQGKYMA 251 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la 251 (260)
+ ...|+++++++|+++|++|+
T Consensus 120 ----------~----~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 120 ----------V----NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ----------E----ccCCCHHHHHHHHHHHHHHh
Confidence 1 13699999999999999986
No 6
>PRK06756 flavodoxin; Provisional
Probab=99.92 E-value=4.5e-24 Score=174.05 Aligned_cols=146 Identities=21% Similarity=0.258 Sum_probs=121.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||||+|||+|++|||++||+.|++++++ .|++++++++.+.. ...++.++|+||||+|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~~~~~~d~vi~gspt 59 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRE-TENEIEVIDIMDSP--------------------EASILEQYDGIILGAYT 59 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhh-cCCeEEEeehhccC--------------------CHHHHhcCCeEEEEeCC
Confidence 7899999999999999999999999988 89999999986531 14568899999999999
Q ss_pred cC-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 139 RY-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 139 Y~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
|+ |.+|..++.|++.+..+ .++||++++|+++++..++...++..+.+.|...|+.++..+..+
T Consensus 60 ~~~g~~p~~~~~fl~~l~~~----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~----------- 124 (148)
T PRK06756 60 WGDGDLPDDFLDFYDAMDSI----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKV----------- 124 (148)
T ss_pred CCCCCCcHHHHHHHHHHhcC----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEE-----------
Confidence 96 77888899999987532 689999999999765334445567889999999999998754431
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVV 254 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~ 254 (260)
...|++++++.++.+|++|++.+
T Consensus 125 --------------~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 125 --------------ELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred --------------ecCCCHHHHHHHHHHHHHHHHhc
Confidence 23699999999999999998753
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.92 E-value=4.9e-24 Score=172.30 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=116.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+|++|||+|++|||++||++|++++++ .|++++++++.+. +..++.+||+||||||+
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~~~~~d~iilgsp~ 58 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKE-NGAEVKLLNVSEA---------------------SVDDVKGADVVALGSPA 58 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEECCCC---------------------CHHHHHhCCEEEEECCc
Confidence 7899999999999999999999999988 8999999999764 13578999999999999
Q ss_pred cCCCch--HHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 139 RYGCMA--AQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 139 Y~g~~~--~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|+++++ ..++.|++++.. .++||++++|+++||..+. ....+...+..+|+.+++.++.+
T Consensus 59 y~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~~~---~~~~~~~~l~~~g~~~~~~~~~~---------- 120 (142)
T PRK05568 59 MGDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGDGE---WMRDWVERMEGYGANLVNEGLIV---------- 120 (142)
T ss_pred cCcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCCCh---HHHHHHHHHHHCCCEEeCCcEEE----------
Confidence 999874 689999998742 4689999999999884332 34667777888999988754321
Q ss_pred CCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
+..|+++++++|+.+|++|++
T Consensus 121 ---------------~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 121 ---------------NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred ---------------ecCCCHHHHHHHHHHHHHHHh
Confidence 126999999999999999874
No 8
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.91 E-value=6.3e-24 Score=173.29 Aligned_cols=141 Identities=27% Similarity=0.398 Sum_probs=114.4
Q ss_pred CeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC-CCCCCcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP-PRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~-~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
|||+||++|+ .|||+.+++++++.+++ .|++++++++.+...+.|.++..|. ...|++.++ .+++.+||+|||+|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~-~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEE-AGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQEL-YDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHH-TTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHH-HHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHH-cCCEEEEEeccccchhhcccccccccCCcHHHHHH-HhceecCCeEEEee
Confidence 7999999997 59999999999999998 7999999999998334444333222 224566666 79999999999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
|+|++++|+.||+|||++.. +....|.||++++++++|+..|+ ..+...+...+..+||.+++..+
T Consensus 79 P~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~~~ 144 (152)
T PF03358_consen 79 PVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPSGV 144 (152)
T ss_dssp EEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECCSE
T ss_pred cEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCCcE
Confidence 99999999999999999964 44568999999999888775554 45668888899999999998743
No 9
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.90 E-value=1e-22 Score=190.89 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=125.7
Q ss_pred cCccccccCCCCeEEEEEecCchhHHHHHHHHHHHcc--CCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh
Q 024934 49 TTSSQLREITKLKIFIVFYSMYGHVEGLAKRMKKGVD--GVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL 126 (260)
Q Consensus 49 ~~~~~~~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~--~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l 126 (260)
.|+... .++||+|||+|+||||++||++|+++++ + .|++++++++.+.. ..++ .+++
T Consensus 240 ~~~~~~---~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~----------------~~~i-~~~~ 298 (394)
T PRK11921 240 EWAANY---QENQVTILYDTMWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSD----------------KNDI-ITEV 298 (394)
T ss_pred HHhhcC---CcCcEEEEEECCchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCC----------------HHHH-HHHH
Confidence 555533 5899999999999999999999999998 5 79999999998742 2333 4667
Q ss_pred hhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcccc
Q 024934 127 VEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTF 206 (260)
Q Consensus 127 ~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~ 206 (260)
.+||+||||||||++++.+.|+.|++.+..+ .++||++++|+|+|| .|+ ++..+.+.|...|+.++..++.+
T Consensus 299 ~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~----~~~~K~~a~FGsygw-~g~---a~~~~~~~l~~~g~~~v~~~~~~ 370 (394)
T PRK11921 299 FKSKAILVGSSTINRGILSSTAAILEEIKGL----GFKNKKAAAFGSYGW-SGE---SVKIITERLKKAGFEIVNDGIRE 370 (394)
T ss_pred HhCCEEEEECCCcCccccHHHHHHHHHhhcc----CcCCCEEEEEecCCC-ccH---HHHHHHHHHHHCCCEEccCcEEE
Confidence 8999999999999999888999999987643 689999999999998 333 35778888899999998754431
Q ss_pred CCccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024934 207 GAGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVV 254 (260)
Q Consensus 207 ~~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~ 254 (260)
...|+++++++|+++|++|++.+
T Consensus 371 -------------------------~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 371 -------------------------LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred -------------------------EeCCCHHHHHHHHHHHHHHHHhh
Confidence 13599999999999999998754
No 10
>PRK06242 flavodoxin; Provisional
Probab=99.89 E-value=1.7e-22 Score=164.56 Aligned_cols=147 Identities=21% Similarity=0.245 Sum_probs=111.7
Q ss_pred CeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 60 LKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||++|||+|+ +|||+++|+.|++++.. +++++.+. ...++.+||.||||+|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~------~~~~i~~~---------------------~~~~~~~~d~ii~g~pv 53 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDA------EVIDPGDV---------------------NPEDLSEYDLIGFGSGI 53 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCc------EEecHHHC---------------------CcccHhHCCEEEEeCch
Confidence 6899999999 79999999999999842 55666542 13568899999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRG 218 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~ 218 (260)
|++++++.|+.|+|++. .+.||++++|+|+||..++. +..+...+..+|+.+++.... .+
T Consensus 54 y~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~~~-----------~g 113 (150)
T PRK06242 54 YFGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEFSC-----------KG 113 (150)
T ss_pred hcCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEEec-----------CC
Confidence 99999999999999874 35799999999999854433 567788888999999875221 11
Q ss_pred Cccccccee-cCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024934 219 GSPYGAGVF-AGDGTREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 219 g~~~g~~~~-~~~g~~~p~e~~le~a~~~G~~la~~ 253 (260)
-..++...+ .+....+|++++++.|+.+|++|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 114 FDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred cccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 112222111 11224579999999999999999753
No 11
>PRK06703 flavodoxin; Provisional
Probab=99.89 E-value=4.5e-22 Score=162.77 Aligned_cols=148 Identities=22% Similarity=0.252 Sum_probs=120.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||||+|+|+|++|||+.||+.|++++++ .|++++++++.+. +..++.++|.|||||||
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~viigspt 58 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDA-FDHEVVLQEMDGM---------------------DAEELLAYDGIILGSYT 58 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-cCCceEEEehhhC---------------------CHHHHhcCCcEEEEECC
Confidence 7899999999999999999999999988 8999999998763 13568899999999999
Q ss_pred c-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 139 R-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
| .|.+|..++.|++.+..+ .+++|++++|++++|..+........+.+.|..+|+.+++..+.+
T Consensus 59 ~~~g~~p~~~~~f~~~l~~~----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~----------- 123 (151)
T PRK06703 59 WGDGDLPYEAEDFHEDLENI----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKI----------- 123 (151)
T ss_pred CCCCcCcHHHHHHHHHHhcC----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEE-----------
Confidence 9 588888999999987532 578999999999877422223455778888999999988754431
Q ss_pred CCcccccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPS-ETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~-e~~le~a~~~G~~la~~~~~l 257 (260)
...|+ +++++.++.++++|++.++++
T Consensus 124 --------------~~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 124 --------------ELAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred --------------ecCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 12575 799999999999999887654
No 12
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.88 E-value=6.1e-22 Score=189.77 Aligned_cols=147 Identities=21% Similarity=0.306 Sum_probs=121.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCC-CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGV-DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~-~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.++||+|||+|+||||++||++|++++++. .|++++++++.+.. ..++ ..++.+||+|||||
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~----------------~~~i-~~~~~~ad~vilGs 312 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSD----------------KNEI-LTNVFRSKGVLVGS 312 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCC----------------HHHH-HhHHhhCCEEEEEC
Confidence 589999999999999999999999999862 26899999998752 2233 45667899999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|||++++.+.|+.|++.+..+ .++||++++|+|+|| .|+ .+..+.+.|...|+.++. ++.
T Consensus 313 pT~~~~~~p~~~~fl~~l~~~----~l~gK~~~vFGSygw-~g~---a~~~~~~~l~~~g~~~~~-~l~----------- 372 (479)
T PRK05452 313 STMNNVMMPKIAGLLEEITGL----RFRNKRASAFGSHGW-SGG---AVDRLSTRLQDAGFEMSL-SLK----------- 372 (479)
T ss_pred CccCCcchHHHHHHHHHhhcc----CcCCCEEEEEECCCc-CcH---HHHHHHHHHHHCCCEEec-cEE-----------
Confidence 999999999999999998654 589999999999998 443 356778888889999874 222
Q ss_pred CCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
....|+++++++|+.+|++|++.++
T Consensus 373 --------------~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 373 --------------AKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred --------------EEecCCHHHHHHHHHHHHHHHHHHh
Confidence 1236999999999999999997765
No 13
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.88 E-value=1.4e-21 Score=156.70 Aligned_cols=138 Identities=25% Similarity=0.331 Sum_probs=112.9
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYG 141 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g 141 (260)
|+|||+|++|||+++|++|++++.+ .|++++++++.+. +..++.++|.||||+|||++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~iilgspty~~ 58 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKE-AGAEVDLLEVADA---------------------DAEDLLSYDAVLLGCSTWGD 58 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHh-cCCeEEEEEcccC---------------------CHHHHhcCCEEEEEcCCCCC
Confidence 6899999999999999999999998 8999999998763 24577889999999999985
Q ss_pred C-ch-HHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCC
Q 024934 142 C-MA-AQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGG 219 (260)
Q Consensus 142 ~-~~-~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g 219 (260)
+ +| ..++.|++++... .++||++++|+++||... -..+...+...|..+|+.++..+..
T Consensus 59 g~~p~~~~~~f~~~l~~~----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~-------------- 119 (140)
T TIGR01753 59 EDLEQDDFEPFFEELEDI----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLK-------------- 119 (140)
T ss_pred CCCCcchHHHHHHHhhhC----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCee--------------
Confidence 5 66 8999999997532 579999999999887431 2345677888888899998865332
Q ss_pred cccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 024934 220 SPYGAGVFAGDGTREPSETELALAEHQGKYMA 251 (260)
Q Consensus 220 ~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la 251 (260)
+ ...|++++++.++.+|++|+
T Consensus 120 -------~----~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 120 -------V----DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred -------e----ecCCCHHHHHHHHHHHHHhC
Confidence 1 13699999999999999874
No 14
>PRK07308 flavodoxin; Validated
Probab=99.87 E-value=4.8e-21 Score=155.92 Aligned_cols=144 Identities=19% Similarity=0.104 Sum_probs=116.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+|+.|+|+|++|||+++|+.|++++.+ .|++++++++.+. +..++.++|+||||+||
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~---------------------~~~~l~~~d~vi~g~~t 58 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRE-LGHDVDVDECTTV---------------------DASDFEDADIAIVATYT 58 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHh-CCCceEEEecccC---------------------CHhHhccCCEEEEEeCc
Confidence 7799999999999999999999999988 8999999888763 24567899999999999
Q ss_pred cC-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 139 RY-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 139 Y~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
|. |.+|..++.|++.+... .++||++++|+++....++....+..+.+.|...|+.++...+.
T Consensus 59 ~g~G~~p~~~~~fl~~l~~~----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~------------ 122 (146)
T PRK07308 59 YGDGELPDEIVDFYEDLADL----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVK------------ 122 (146)
T ss_pred cCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEE------------
Confidence 97 88999999999998643 57899999999943222222335577778888888887754332
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~ 253 (260)
.+..|++++++.++.+|++|++.
T Consensus 123 -------------~~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 123 -------------VDLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred -------------EeCCCCHHHHHHHHHHHHHHHhh
Confidence 12359999999999999999864
No 15
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.86 E-value=1.7e-20 Score=159.64 Aligned_cols=170 Identities=11% Similarity=0.073 Sum_probs=128.2
Q ss_pred CeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 60 LKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 60 ~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|||++|++|+ .++|.++++.+++.+.+ .|+++++++|.+..+..|..|. ...+++..+ .++|.+||+|||+||
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~-~g~ev~~idL~~l~~~~~~~~~---~~~~~~~~~-~~~i~~AD~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNG-LGVEVYHWNLQNFAPEDLLYAR---FDSPALKTF-TEQLAQADGLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHh-CCCEEEEEEccCCChHHHHhcc---CCCHHHHHH-HHHHHHCCEEEEECC
Confidence 6999999997 58999999999999998 8999999999987766666532 112355555 789999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHH-HHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTA-WTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l-~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
+||+++|+.||+|||++.. ..|.||++++++++|. .|+. ..+ ..+...|..+|+.+++.+.......
T Consensus 76 ~Y~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~-~~~~-~~~~~~lr~~l~~l~a~~~~~~~~~~~~~------ 143 (191)
T PRK10569 76 VYKASFSGALKTLLDLLPE----RALEHKVVLPLATGGS-VAHM-LAVDYALKPVLSALKAQEILHGVFADDSQ------ 143 (191)
T ss_pred ccCCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCC-chhH-HHHHHHHHHHHHHcCCeecCceEEEechh------
Confidence 9999999999999998842 3689999999988765 3433 233 4566677888998887654421110
Q ss_pred CCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
+. .++.++ ..+++..++.+.+.+.+++.+.
T Consensus 144 -----~~--~~d~~~--~~d~~~~~rl~~~~~~~~~~~~ 173 (191)
T PRK10569 144 -----VI--DYHHQP--QFTPNLQTRLDEALETFWQALH 173 (191)
T ss_pred -----hh--cccccc--ccCHHHHHHHHHHHHHHHHHHc
Confidence 00 122223 3489999999999999987664
No 16
>PRK09267 flavodoxin FldA; Validated
Probab=99.84 E-value=3e-19 Score=148.71 Aligned_cols=156 Identities=22% Similarity=0.253 Sum_probs=114.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||||+|+|+|++|||+++|+.|++.++. .+++++++.+. ...++.+||.||||+||
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~---------------------~~~~l~~~d~vi~g~pt 56 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK---DVADVVDIAKA---------------------SKEDFEAYDLLILGIPT 56 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEhhhC---------------------CHhhHhhCCEEEEEecC
Confidence 7899999999999999999999999964 36788887652 23568899999999999
Q ss_pred cC-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCCh---HHHHHHHHHHHHhcCcEEecC----ccccCCcc
Q 024934 139 RY-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQ---ETTAWTAITQLAHHGMLFVPI----GYTFGAGM 210 (260)
Q Consensus 139 Y~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~---e~~l~~l~~~l~~~gm~vV~~----~~~~~~~~ 210 (260)
|+ |.++..++.|++.+..+ .|+||++++|++++.. +.. ...+..+.+.|.++|+.+++. +|.+-.
T Consensus 57 ~~~G~~~~~~~~fl~~~~~~----~l~~k~vaifg~g~~~-~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~-- 129 (169)
T PRK09267 57 WGYGELQCDWDDFLPELEEI----DFSGKKVALFGLGDQE-DYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEA-- 129 (169)
T ss_pred cCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEecCCCC-cchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccc--
Confidence 96 88899999999987432 6889999999876542 221 334677888899999999988 665421
Q ss_pred ccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 024934 211 FKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMA 251 (260)
Q Consensus 211 ~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la 251 (260)
..+++++.++|... |.+..++..+ ++.+.+.+.|.
T Consensus 130 --~~~~~~~~~~g~~~---d~~~~~~~td-~~i~~w~~~i~ 164 (169)
T PRK09267 130 --SKAVDDGKFVGLAL---DEDNQSELTD-ERIEAWVKQIK 164 (169)
T ss_pred --cceeeCCEEEEEEe---cCCCchhhhH-HHHHHHHHHHH
Confidence 12234566666542 3334455555 66666666554
No 17
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.84 E-value=7.3e-20 Score=153.26 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=119.3
Q ss_pred eEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC-CCCCCcccccHhhhhhcCEEEEEcc
Q 024934 61 KIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP-PRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 61 KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~-~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
||++|.+|+ .|+|.+|++.+.+.+.+..|+++++++|.+..+ |+.+..|. ...+++..+ .+++.+||+|||+||
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~--~~~~~~~~~~~~~~~~~~-~~~i~~AD~iIi~tP 77 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAP--SLGGALWRSQLPPDAERI-LQAIESADLLVVGSP 77 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcCh--hhccccccCCCCHHHHHH-HHHHHHCCEEEEECC
Confidence 799999997 589999999999998632689999999987533 22221111 123455556 789999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
+||+++|++||+|+|++.. ..|.||++++++++|+..++ ......+...+..+|+.+++......
T Consensus 78 ~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~---------- 142 (174)
T TIGR03566 78 VYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERHA-LMVEHQLRPLFGFFQALTLPTGVYAS---------- 142 (174)
T ss_pred cCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccch-HHHHHHHHHHHHHhCcccccceEEEE----------
Confidence 9999999999999998752 36899999988887653332 22233456667777877766432210
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
...+. +|. ..|++..++.+.+.+.+++.+.
T Consensus 143 ------~~~~~-~g~-l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 143 ------DADFA-DYR-LASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred ------hhhhc-ccc-ccCHHHHHHHHHHHHHHHHHhc
Confidence 00121 232 3577888888888888887653
No 18
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.83 E-value=1.1e-19 Score=151.90 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=118.7
Q ss_pred eEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 61 KIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 61 KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||++|++|+ .|+|.++++.+.+.+.+ .|.+++++++.+.....|..|.. ..+++..+ .+++.+||+|||+||+
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~~~~~~~~~---~~~~~~~l-~~~i~~AD~iI~~sP~ 75 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQE-QGVEVDHLSVRDLPAEDLLFARF---DSPAIKAA-TAQVAQADGVVVATPV 75 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHH-CCCeEEEEEecCCChHHhhhcCC---CCHHHHHH-HHHHHHCCEEEEECCc
Confidence 799999997 68999999999999988 79999999998865555554432 23456666 7899999999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHH-HHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTA-WTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l-~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
||+++|+.||+|||++.. ..|.||++++++++|. .++.. .+ ..+...|..+|+.++...+.+....
T Consensus 76 Y~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~-~~~~~-~~~~~l~~~l~~l~~~~~~~~v~~~~~~------- 142 (171)
T TIGR03567 76 YKASYSGVLKALLDLLPQ----RALRGKVVLPIATGGS-IAHLL-AIDYALKPVLSALGARHILPGVFALDSQ------- 142 (171)
T ss_pred ccCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCc-hhHHH-HHHHHHHHHHHHcCCccccceEEEEhhH-------
Confidence 999999999999999852 3689999988777654 33322 22 3466677788886544332211100
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
..+..+|....+++.++.++.++.+++.
T Consensus 143 -------~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 143 -------IERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred -------hccccCCccccCHHHHHHHHHHHHHHHh
Confidence 0122234222577777888887777653
No 19
>PRK00170 azoreductase; Reviewed
Probab=99.82 E-value=6.8e-20 Score=156.18 Aligned_cols=140 Identities=18% Similarity=0.123 Sum_probs=102.2
Q ss_pred CCeEEEEEecC--c-hhHHHHHHHHHHHccCCC--CceEEEEEcCCCCcHHHhh------cCCCC---C-----CCCCcc
Q 024934 59 KLKIFIVFYSM--Y-GHVEGLAKRMKKGVDGVD--GVEGLLYRVPETLTREALD------HMKVP---P-----RDDDIP 119 (260)
Q Consensus 59 m~KVlIIy~S~--~-GnT~~lA~~i~~~l~~~~--G~ev~li~l~~~~~~~~~~------~~~~~---~-----~~dd~~ 119 (260)
|||||+|++|+ . |+|.++++.+.+++++ . |.++++++|.+...+ |+. +..+. . ..|++.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~-~~~~~~v~~~dL~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 78 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKE-AHPDDEVTVRDLAAEPIP-VLDGEVVGALGKSAETLTPRQQEAVALSD 78 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCC-CCCHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 79999999997 4 8999999999999988 6 899999999877442 221 11111 1 024555
Q ss_pred cccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccc-----c----CCCCCCCcEEEEEeeCCCCCC--hHHHHHHH
Q 024934 120 EISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLW-----K----EGKLVGKPAGFFVSTGTQGGG--QETTAWTA 188 (260)
Q Consensus 120 ~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~-----~----~~~l~gK~~~if~s~G~~~Gg--~e~~l~~l 188 (260)
++ .++|.+||+|||+||+||+++|+.||+|+|++...+ . .+.|.||++.+++++|+..++ .+.....+
T Consensus 79 ~l-~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~ 157 (201)
T PRK00170 79 EL-LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYL 157 (201)
T ss_pred HH-HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHH
Confidence 56 789999999999999999999999999999985321 0 135799999999988763221 12333445
Q ss_pred HHHHHhcCcEEec
Q 024934 189 ITQLAHHGMLFVP 201 (260)
Q Consensus 189 ~~~l~~~gm~vV~ 201 (260)
...+...|+..+.
T Consensus 158 ~~~~~~~G~~~~~ 170 (201)
T PRK00170 158 KTFLGFIGITDVE 170 (201)
T ss_pred HHHHHhcCCCceE
Confidence 5566667776554
No 20
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.80 E-value=4.2e-19 Score=163.60 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=125.1
Q ss_pred cCccccccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhh
Q 024934 49 TTSSQLREITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVE 128 (260)
Q Consensus 49 ~~~~~~~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~ 128 (260)
.|+... ...||+|+|.|+||||+.||++|+++|.+ .|+.|+++++... +.+++ .+++.+
T Consensus 239 ~W~~~~---~~~~V~l~Y~smyg~T~~ma~aiaegl~~-~gv~v~~~~~~~~----------------~~~eI-~~~i~~ 297 (388)
T COG0426 239 DWAEGQ---PKGKVDLIYDSMYGNTEKMAQAIAEGLMK-EGVDVEVINLEDA----------------DPSEI-VEEILD 297 (388)
T ss_pred HHHccC---CcceEEEEEecccCCHHHHHHHHHHHhhh-cCCceEEEEcccC----------------CHHHH-HHHHhh
Confidence 566533 22389999999999999999999999999 9999999999874 55677 889999
Q ss_pred cCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCC
Q 024934 129 ADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGA 208 (260)
Q Consensus 129 AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~ 208 (260)
|++|++||||+++.+++.+..++-.+..+ ..++|++++|+|+|| +|+. +..+.+.|..+|+.+...++.
T Consensus 298 a~~~vvGsPT~~~~~~p~i~~~l~~v~~~----~~~~k~~~vfgS~GW-~g~a---v~~i~~~l~~~g~~~~~~~i~--- 366 (388)
T COG0426 298 AKGLVVGSPTINGGAHPPIQTALGYVLAL----APKNKLAGVFGSYGW-SGEA---VDLIEEKLKDLGFEFGFDGIE--- 366 (388)
T ss_pred cceEEEecCcccCCCCchHHHHHHHHHhc----cCcCceEEEEeccCC-CCcc---hHHHHHHHHhcCcEEeccceE---
Confidence 99999999999999999999999987654 568899999999999 4443 466778888888877644322
Q ss_pred ccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 209 GMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 209 ~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
-+..|+++++++|+++|+.|++
T Consensus 367 ----------------------vk~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 367 ----------------------VKFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred ----------------------EEecCCHHHHHHHHHHHHHhcC
Confidence 1347999999999999999874
No 21
>PRK09739 hypothetical protein; Provisional
Probab=99.79 E-value=3.7e-19 Score=152.09 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC-------CCCCCcccccHhhhhhc
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP-------PRDDDIPEISAADLVEA 129 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~-------~~~dd~~~i~~~~l~~A 129 (260)
|||||+|++|+ .|+|..+++.+++++++ .|.++++++|.+..+++|+.|..+. ...+++..+ .++|.+|
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQL-YSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHH-HHHHHhC
Confidence 89999999997 58899999999999998 7899999999987666666554321 113445555 7899999
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhccc-cc---CCCCCCCcEEEEEeeCCC
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTGML-WK---EGKLVGKPAGFFVSTGTQ 177 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~~l-~~---~~~l~gK~~~if~s~G~~ 177 (260)
|.|||++|+||+++|+.||+|+|++... |. ...|.+|++.+++++|+.
T Consensus 81 D~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 81 DALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred CEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 9999999999999999999999997521 11 134789999888887663
No 22
>PRK01355 azoreductase; Reviewed
Probab=99.78 E-value=4e-18 Score=145.81 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCeEEEEEecCc----hhHHHHHHHHHHHccCC-CCceEEEEEcCCCCcHHHhhc---CCCCCCCCCcccccHhhhhhcC
Q 024934 59 KLKIFIVFYSMY----GHVEGLAKRMKKGVDGV-DGVEGLLYRVPETLTREALDH---MKVPPRDDDIPEISAADLVEAD 130 (260)
Q Consensus 59 m~KVlIIy~S~~----GnT~~lA~~i~~~l~~~-~G~ev~li~l~~~~~~~~~~~---~~~~~~~dd~~~i~~~~l~~AD 130 (260)
|+|||+|++|+. |||..+++++++++++. .+.++++++|.+...+.|..+ ..|....+++..+ .++|.+||
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~AD 79 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKY-INQLKSVD 79 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHH-HHHHHhCC
Confidence 899999999984 79999999999999762 358999999998754433222 1222234566666 78999999
Q ss_pred EEEEEccccCCCchHHHHHHHHHhccc-----c---c----CCCCCCCcEEEEEeeCCCCCCh--HHHHHHHHHHHHhcC
Q 024934 131 GFLFGFPTRYGCMAAQMKAFFDSTGML-----W---K----EGKLVGKPAGFFVSTGTQGGGQ--ETTAWTAITQLAHHG 196 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~flD~~~~l-----~---~----~~~l~gK~~~if~s~G~~~Gg~--e~~l~~l~~~l~~~g 196 (260)
+|||+||+||+++|++||+|+|++... + . ...+.||++.+++++|...+.. +.....+...+..+|
T Consensus 80 ~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 80 KVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 999999999999999999999997421 1 1 1347899999999988633211 223345556666677
Q ss_pred cEEec
Q 024934 197 MLFVP 201 (260)
Q Consensus 197 m~vV~ 201 (260)
+..+.
T Consensus 160 ~~~~~ 164 (199)
T PRK01355 160 AKVVD 164 (199)
T ss_pred CCcee
Confidence 76554
No 23
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.76 E-value=3.5e-17 Score=141.60 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=128.2
Q ss_pred cCCCCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEE
Q 024934 56 EITKLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFL 133 (260)
Q Consensus 56 ~~~m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II 133 (260)
-++++||++|.+|. ..++.++++++++.+.+ .|++++++++.+........ . ..+.+..+ .+.+.+||+||
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~-~g~~v~~idl~~lPl~~~d~---~--~~p~v~~l-~~~v~~ADgvi 95 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGC-EGRETRIFDPPGLPLPDAAH---A--DHPKVREL-RQLSEWSEGQV 95 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhh-cCCEEEEeCcccCCCCCcCc---c--cCHHHHHH-HHHHHhCCEEE
Confidence 45799999999996 46889999999999987 69999999998653211000 0 01122223 57789999999
Q ss_pred EEccccCCCchHHHHHHHHHhccccc-CCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccc
Q 024934 134 FGFPTRYGCMAAQMKAFFDSTGMLWK-EGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFK 212 (260)
Q Consensus 134 ~GsPtY~g~~~~~mK~flD~~~~l~~-~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~ 212 (260)
|+||.|++++|+.+||+||.+...|. .+.|.||++++++++|+.. ....+..+...|..+++.+++....+..
T Consensus 96 i~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~p~~v~i~~---- 169 (219)
T TIGR02690 96 WCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTIPNQSSVAK---- 169 (219)
T ss_pred EeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccccchhhhhh----
Confidence 99999999999999999999876553 2368999999987765422 2345677888888899998886432110
Q ss_pred ccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 213 MDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 213 ~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
....|+.+| ...+++..+..+.+...+.+.++..
T Consensus 170 ----------a~~~fd~~G-~l~d~~~~~~l~~~l~~~~~~~~~~ 203 (219)
T TIGR02690 170 ----------AFDEFDEAG-RMKPSDYYDRVVDVMEELTKFTLLT 203 (219)
T ss_pred ----------hHhhcCcCC-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 011133344 3567888888888888888777654
No 24
>PRK09271 flavodoxin; Provisional
Probab=99.75 E-value=3.5e-17 Score=135.39 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=102.8
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+|||+|++|||++||+.|++++++ .|++++++++... ++.++ ..++.++|+||||||||
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~----------------~~~~~-~~~~~~~d~vilgt~T~ 62 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEE-AGHEVDWVETDVQ----------------TLAEY-PLDPEDYDLYLLGTWTD 62 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHh-CCCeeEEEecccc----------------ccccc-ccCcccCCEEEEECccc
Confidence 699999999999999999999999998 8999998888653 22222 34667999999999999
Q ss_pred CCC-chHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCCh--HHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 140 YGC-MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQ--ETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 140 ~g~-~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~--e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
+++ +|..++.|++.+... ..++|++++|++++...++. -.+...+...|... .+ .+.
T Consensus 63 ~~G~~p~~~~~f~~~l~~~----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~----~~-~l~----------- 122 (160)
T PRK09271 63 NAGRTPPEMKRFIAELAET----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS----YP-RLK----------- 122 (160)
T ss_pred CCCcCCHHHHHHHHHHHHH----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc----CC-cee-----------
Confidence 754 577899999988532 34789999999973212221 13345555555321 11 011
Q ss_pred CCCcccccceecCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAGDGTREPSE-TELALAEHQGKYMAAVVK 255 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~e-~~le~a~~~G~~la~~~~ 255 (260)
.+..|++ .+++.++.++++++..++
T Consensus 123 --------------~~~~p~~~~d~~~~~~~~~~~~~~~~ 148 (160)
T PRK09271 123 --------------IEQMPHGERDAAAIDNWTDKVLALCK 148 (160)
T ss_pred --------------eecCCccchhHHHHHHHHHHHHHHhh
Confidence 1234665 568999999999987763
No 25
>PRK13556 azoreductase; Provisional
Probab=99.74 E-value=2.1e-17 Score=142.15 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=99.9
Q ss_pred CCeEEEEEecCc----hhHHHHHHHHHHHccCC-CCceEEEEEcCCCCcHHHhhc---CC-------CCCC------CCC
Q 024934 59 KLKIFIVFYSMY----GHVEGLAKRMKKGVDGV-DGVEGLLYRVPETLTREALDH---MK-------VPPR------DDD 117 (260)
Q Consensus 59 m~KVlIIy~S~~----GnT~~lA~~i~~~l~~~-~G~ev~li~l~~~~~~~~~~~---~~-------~~~~------~dd 117 (260)
|+|||+|++|+. ++|+.+++++++.+++. .|.+|++++|.+...+. +.| .. |... .++
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPY-VGVDMINGTFKAGKGFELTEEEAKAVAV 79 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC-CCHHHHHhhccccccccCCHHHHHHHHH
Confidence 789999999974 78999999999999762 37999999999764322 222 11 2110 122
Q ss_pred cccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-c----c----CCCCCCCcEEEEEeeCCCC-C----ChHH
Q 024934 118 IPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-W----K----EGKLVGKPAGFFVSTGTQG-G----GQET 183 (260)
Q Consensus 118 ~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-~----~----~~~l~gK~~~if~s~G~~~-G----g~e~ 183 (260)
+..+ .++|.+||.|||++|.||+++|+.||+|+|++... | . .+.|.+|++.+++++|+.. + +.+.
T Consensus 80 ~~~~-~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~ 158 (208)
T PRK13556 80 ADKY-LNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEM 158 (208)
T ss_pred HHHH-HHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhc
Confidence 3333 58899999999999999999999999999998643 1 1 1358999999999987643 1 1112
Q ss_pred HHHHHHHHHHhcCcEEec
Q 024934 184 TAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 184 ~l~~l~~~l~~~gm~vV~ 201 (260)
....+...|...|+..++
T Consensus 159 ~~~~l~~il~~~G~~~~~ 176 (208)
T PRK13556 159 AVKYVASMMGFFGVTNME 176 (208)
T ss_pred cHHHHHHHHHhcCCCcee
Confidence 234556666667776655
No 26
>PRK12359 flavodoxin FldB; Provisional
Probab=99.72 E-value=6e-16 Score=129.44 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=92.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+|||+|.+|||+.+|+.|++.+.. ..++++++.+. ..+++.+||.||||+|||
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~---~~v~v~~i~~~---------------------~~~~l~~yD~iIlG~pTw 56 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE---ELVDLHNLKDD---------------------PPKLMEQYDVLILGIPTW 56 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC---CeEEEEEcccC---------------------ChhHHccCCEEEEEeccc
Confidence 699999999999999999999999843 24678887653 256788999999999998
Q ss_pred -CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCCh--HHHHHHHHHHHHhcCcEEecC
Q 024934 140 -YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQ--ETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 140 -~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~--e~~l~~l~~~l~~~gm~vV~~ 202 (260)
.|.++..+..|++.+... .|+||++++|+++...+.+. ...+..+.+.|...|..+|+.
T Consensus 57 ~~Gel~~d~~~~~~~l~~~----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~ 118 (172)
T PRK12359 57 DFGEIQEDWEAVWDQLDDL----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGY 118 (172)
T ss_pred CCCcCcHHHHHHHHHHhhC----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEee
Confidence 577899999999887532 68999999999765422221 234567888888889999875
No 27
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.68 E-value=2.7e-15 Score=124.88 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=91.5
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc-
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR- 139 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY- 139 (260)
||+|+|+|.+|||+++|+.|++.+.+ .+++++++.+. +..++.++|.||||+|||
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~---------------------~~~~l~~~d~ii~gspty~ 56 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE---DDVDVFNIAKA---------------------SKEDLNAYDKLILGTPTWG 56 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEcccC---------------------CHhHHhhCCEEEEEecCCC
Confidence 68999999999999999999999964 45788888663 245788999999999999
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCC-C-ChHHHHHHHHHHHHhcCcEEecC
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQG-G-GQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~-G-g~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
+|.+|..++.|++.+.. ..++||++++|++++... + .....+..+.+.|...|+.+++.
T Consensus 57 ~g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~ 117 (167)
T TIGR01752 57 VGELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGF 117 (167)
T ss_pred CCcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEce
Confidence 57788899999998743 267899999999765321 1 12334678888899999999985
No 28
>PRK07116 flavodoxin; Provisional
Probab=99.68 E-value=3.2e-16 Score=129.62 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=73.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHH--Hhh---cCCCCC-CCCCcccc--cHhhhhhc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTRE--ALD---HMKVPP-RDDDIPEI--SAADLVEA 129 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~--~~~---~~~~~~-~~dd~~~i--~~~~l~~A 129 (260)
.|||++|||+|.+|||+++|+.|++.+.. ...+ +.......... ... ...+.. .....+.+ ...++.+|
T Consensus 1 ~m~k~lIvY~S~tGnT~~iA~~Ia~~l~~-d~~~--i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 1 ANNKTLVAYFSATGTTKKVAEKLAEVTGA-DLFE--IKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHhcC-CeEE--EeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 48999999999999999999999999965 2222 22221110000 000 000000 00011111 13468899
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ 177 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~ 177 (260)
|.||||+|+|++++|..++.|++.+ .+.||++++|+|+|+.
T Consensus 78 D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~ 118 (160)
T PRK07116 78 DVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGS 118 (160)
T ss_pred CEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCC
Confidence 9999999999999999999999975 5789999999998764
No 29
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.67 E-value=1.3e-15 Score=123.16 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=81.1
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEE-EEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGL-LYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~-li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||++|||+|++|||++||+.|++.+.. .|++++ ++++.+. ... ..++.++|.||||||+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~------------------~~~-~~~~~~~d~iilgs~t 60 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTL------------------ADA-PLDPENYDLVFLGTWT 60 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhh-CCeeEEeccccccc------------------ccC-cCChhhCCEEEEEcCe
Confidence 699999999999999999999999988 888887 5555431 011 2356789999999999
Q ss_pred c-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCC--hHHHHHHHHHHHH
Q 024934 139 R-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG--QETTAWTAITQLA 193 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg--~e~~l~~l~~~l~ 193 (260)
| +|.+|..++.|++.+. .++|.+++|++++...++ --.++..+...|.
T Consensus 61 ~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 61 WERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred eCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 8 5678889999999873 378999999998532222 1134566666664
No 30
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.67 E-value=3.5e-16 Score=129.02 Aligned_cols=119 Identities=20% Similarity=0.345 Sum_probs=70.6
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC------C-CCCCccccc--HhhhhhcCE
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP------P-RDDDIPEIS--AADLVEADG 131 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~------~-~~dd~~~i~--~~~l~~AD~ 131 (260)
|+||||||.+|||+++|+.|++.+. +++.-+...+..+..-+....|. . .....|++. ..++.+||.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~g----adi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTG----ADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-----EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHC----CCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 7999999999999999999998764 34433333232332001100000 0 111223331 347899999
Q ss_pred EEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHH
Q 024934 132 FLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQL 192 (260)
Q Consensus 132 II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l 192 (260)
|++|+|+||+++|..|..||+.. +|+||.++.|+|+|+. +...+...|...+
T Consensus 77 I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 77 IFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKLC 128 (156)
T ss_dssp EEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred EEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHHC
Confidence 99999999999999999999975 6899999999998762 2234445555443
No 31
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.65 E-value=5.1e-16 Score=130.60 Aligned_cols=88 Identities=20% Similarity=0.375 Sum_probs=77.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
||++|||+|.+|||+++|++|++.++. |++++++++.+. ...++.+||.||||+|+|
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~---------------------~~~~l~~yD~vIlGspi~ 57 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE--GIQCDVVNLHRI---------------------EEPDLSDYDRVVIGASIR 57 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC--CCeEEEEEhhhc---------------------CccCHHHCCEEEEECccc
Confidence 699999999999999999999999975 889999998753 124678999999999999
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeC
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTG 175 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G 175 (260)
+|.+++.++.|+++.. ..|++|++++|+++.
T Consensus 58 ~G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 58 YGHFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred cCCcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 9999999999998853 268999999999875
No 32
>PRK06934 flavodoxin; Provisional
Probab=99.65 E-value=7.3e-16 Score=133.34 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=84.4
Q ss_pred CCCCeEEEEEecCc------------------------hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC
Q 024934 57 ITKLKIFIVFYSMY------------------------GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP 112 (260)
Q Consensus 57 ~~m~KVlIIy~S~~------------------------GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~ 112 (260)
....||||+|+|.. |||+++|+.|++.+.. .-.+++..+.......++.......
T Consensus 33 ~~~~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~ga-Dl~eI~~~~~Y~~~yd~~~~~a~~E 111 (221)
T PRK06934 33 RNARRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGG-DLFRIETVKPYPRQHDPLLKYAEQE 111 (221)
T ss_pred ccCCceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCC-CEEEEEEccccCCCCchhhhHHHHh
Confidence 35779999999976 8999999999999855 2233333333322222333321111
Q ss_pred CCCCCcccc--cHhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHH
Q 024934 113 PRDDDIPEI--SAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAIT 190 (260)
Q Consensus 113 ~~~dd~~~i--~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~ 190 (260)
...+..|++ ..+++.+||.|+||+|+||+.+|+.|+.||++. +|.||.+..|+|+|+.+ ...++..+.+
T Consensus 112 ~~~~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg--~g~s~~~i~~ 182 (221)
T PRK06934 112 VKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSR--FSDSLREIKR 182 (221)
T ss_pred hhcCCCHHHHHHHHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCCC--ccchHHHHHH
Confidence 111222333 147899999999999999999999999999986 68999999999997532 2334445544
Q ss_pred H
Q 024934 191 Q 191 (260)
Q Consensus 191 ~ 191 (260)
.
T Consensus 183 l 183 (221)
T PRK06934 183 L 183 (221)
T ss_pred H
Confidence 3
No 33
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.63 E-value=9.7e-16 Score=130.60 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=98.4
Q ss_pred CeEEEEEecCc---hhHHHHHHHHHHHccCCCC-ceEEEEEcCCCC-c---HHHhhcCCCCC--CCCCcccccH-hhhhh
Q 024934 60 LKIFIVFYSMY---GHVEGLAKRMKKGVDGVDG-VEGLLYRVPETL-T---REALDHMKVPP--RDDDIPEISA-ADLVE 128 (260)
Q Consensus 60 ~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G-~ev~li~l~~~~-~---~~~~~~~~~~~--~~dd~~~i~~-~~l~~ 128 (260)
||||||++|+. ++|..+++.+.+++++ .+ .+++++||.+.. | ..|..+..+.. ...+... +. +++.+
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~-~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~ 78 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQE-AGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQS-EQIEELLW 78 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHH-HTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHH-HHHHHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHH-cCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHH-HHHHHHHH
Confidence 79999999985 4789999999999998 78 899999999861 1 11222100000 0011111 23 88999
Q ss_pred cCEEEEEccccCCCchHHHHHHHHHhccc-c----------cCCCCCCCcEEEEEeeCCCC------C----ChHHHHHH
Q 024934 129 ADGFLFGFPTRYGCMAAQMKAFFDSTGML-W----------KEGKLVGKPAGFFVSTGTQG------G----GQETTAWT 187 (260)
Q Consensus 129 AD~II~GsPtY~g~~~~~mK~flD~~~~l-~----------~~~~l~gK~~~if~s~G~~~------G----g~e~~l~~ 187 (260)
||.|||++|+||+++|+.||.|+|++... + ....|+||++.+++|+|+.. | ..+..+..
T Consensus 79 AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 79 ADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred cCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 99999999999999999999999998421 1 12478999999999998751 1 12344555
Q ss_pred HHHHHHhcCcEEecC
Q 024934 188 AITQLAHHGMLFVPI 202 (260)
Q Consensus 188 l~~~l~~~gm~vV~~ 202 (260)
+...+...||..+..
T Consensus 159 ~~~~~~~~G~~~~~~ 173 (199)
T PF02525_consen 159 LRGILKFCGIKDVES 173 (199)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHhCCCceeeE
Confidence 677788889988864
No 34
>PRK13555 azoreductase; Provisional
Probab=99.62 E-value=1.1e-14 Score=125.58 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=94.5
Q ss_pred CCeEEEEEecCc----hhHHHHHHHHHHHccCCCC--ceEEEEEcCCCCcHHHhh-----cCCCC----CCC-------C
Q 024934 59 KLKIFIVFYSMY----GHVEGLAKRMKKGVDGVDG--VEGLLYRVPETLTREALD-----HMKVP----PRD-------D 116 (260)
Q Consensus 59 m~KVlIIy~S~~----GnT~~lA~~i~~~l~~~~G--~ev~li~l~~~~~~~~~~-----~~~~~----~~~-------d 116 (260)
|+|||+|+.|+. +.|..+++.+.+++++ .+ .+|+.+||.+..++ .+. ..... ... .
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~-~~p~~~V~~~DL~~~~~p-~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 78 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKE-ANPNTEITELDLFALDLP-YYGNIAISGGYKRSQGMELTAEEEKAVA 78 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCC-cCCHHHHHhhccCCCcccCCHHHHHHHH
Confidence 789999999964 6789999999999987 44 89999999987443 111 10000 000 1
Q ss_pred CcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-c--------cCCCCCCCcEEEEEeeCCCCCCh-----H
Q 024934 117 DIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-W--------KEGKLVGKPAGFFVSTGTQGGGQ-----E 182 (260)
Q Consensus 117 d~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-~--------~~~~l~gK~~~if~s~G~~~Gg~-----e 182 (260)
.+..+ .+++.+||.|||++|.||+++|+.||+|+|++... | ..+.|+||++.+++++|+...+. .
T Consensus 79 ~~~~~-~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~ 157 (208)
T PRK13555 79 TVDQY-LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPME 157 (208)
T ss_pred HHHHH-HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhh
Confidence 12222 57899999999999999999999999999998632 1 01458999999999977643221 1
Q ss_pred HHHHHHHHHHHhcCcE
Q 024934 183 TTAWTAITQLAHHGML 198 (260)
Q Consensus 183 ~~l~~l~~~l~~~gm~ 198 (260)
.....+...|...|+.
T Consensus 158 ~~~~yl~~il~~~Gi~ 173 (208)
T PRK13555 158 MAVNYVTTVLGFWGIT 173 (208)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 1223444555555553
No 35
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.60 E-value=7.6e-15 Score=121.45 Aligned_cols=146 Identities=22% Similarity=0.284 Sum_probs=96.0
Q ss_pred EEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCC
Q 024934 63 FIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGC 142 (260)
Q Consensus 63 lIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~ 142 (260)
||+|+|.+|||+++|++|.+.|.. .+++++.+. .+.+.+||.|+||+++|.|+
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~-----~~~~~~~~~----------------------~~~~~~yD~i~lG~w~d~G~ 53 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA-----KDIVSVEEP----------------------PEDLEDYDLIFLGFWIDKGT 53 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----ceeEecccc----------------------ccCCCCCCEEEEEcCccCCC
Confidence 689999999999999999999954 466777652 22278999999999999999
Q ss_pred chHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHH---HHHHHHHHHHhcCcEEecCccccCCcccccc-----
Q 024934 143 MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQET---TAWTAITQLAHHGMLFVPIGYTFGAGMFKMD----- 214 (260)
Q Consensus 143 ~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~---~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~----- 214 (260)
++..++.||.+ |+||.+++|+|+|.. ...+. .+..+...+ ..+..+++. +.|.+.+...
T Consensus 54 ~d~~~~~fl~~---------l~~KkV~lF~T~G~~-~~s~~~~~~~~~~~~~~-~~~~~~lg~--f~CqGk~~~~~~e~~ 120 (160)
T PF12641_consen 54 PDKDMKEFLKK---------LKGKKVALFGTAGAG-PDSEYAKKILKNVEALL-PKGNEILGT--FMCQGKMDPKVIEKY 120 (160)
T ss_pred CCHHHHHHHHH---------ccCCeEEEEEecCCC-CchHHHHHHHHHHHHhh-ccCCeecce--EEeCCcCCHHHHHHH
Confidence 99999999996 578999999999863 33332 222233333 234556553 2244433210
Q ss_pred -c-cCCCcccccce--ecC--CCCCCCCHHHHHHHHHHHH
Q 024934 215 -S-IRGGSPYGAGV--FAG--DGTREPSETELALAEHQGK 248 (260)
Q Consensus 215 -~-~~~g~~~g~~~--~~~--~g~~~p~e~~le~a~~~G~ 248 (260)
. +.......... +.. ....+||++|++.|+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~a~~HPde~Dl~~a~~~~k 160 (160)
T PF12641_consen 121 KKMLPKNPPHAMTPERLARFDEAASHPDEEDLQNAKAFFK 160 (160)
T ss_pred HhccCCCCCCcccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 0 00111111000 000 2346899999999988753
No 36
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.60 E-value=2.6e-14 Score=116.63 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=94.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||+|+|+|.+|||+.+|+.|++.+.+ .|++++++++.+ .+++.++|.+||++||
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~-----------------------~~~l~~~~~li~~~sT 56 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEE-AGFSTETLHGPL-----------------------LDDLSASGLWLIVTST 56 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHH-cCCceEEeccCC-----------------------HHHhccCCeEEEEECC
Confidence 7899999999999999999999999998 899998876532 4567889999999999
Q ss_pred c-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 139 R-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
| .|.+|...+.|++.+... ...|+|+++++|+.+.+....--.....+.+.|..+|...|..
T Consensus 57 ~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 119 (146)
T PRK09004 57 HGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGE 119 (146)
T ss_pred CCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 9 699999999999977531 2368999999999865532111234567788888888887743
No 37
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.57 E-value=7.5e-14 Score=114.34 Aligned_cols=147 Identities=22% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||+|||+|++|||+.||+.|++.+.+ .|+++++...... ....+..+|.++||+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~-~~~~~~~~~~~~~---------------------~~~~~~~~d~~~~g~~t 58 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGA-DGFEVDIDIRPGI---------------------KDDLLESYDELLLGTPT 58 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhcc-CCceEEEeecCCc---------------------chhhhccCCEEEEEeCC
Confidence 8999999999999999999999999998 8888844444331 12233699999999999
Q ss_pred cC-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCCh--HHHHHHHHHHHHhcCcEEecCccccCCccccccc
Q 024934 139 RY-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQ--ETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDS 215 (260)
Q Consensus 139 Y~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~--e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~ 215 (260)
|+ +..+..+..|++.+.. ..+++|++++|+++ .+.... -.....+...+...|...++..-. .
T Consensus 59 ~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~g-d~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~--~------- 124 (151)
T COG0716 59 WGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLG-DQSYYGYFCEAGGNFEDILEEKGAKAVGILET--L------- 124 (151)
T ss_pred CCCCcCCccHHHHHHHhcc----cCcCCceEEEEecc-ccccchHHHHHHHHHHHHHHHcCccccccccc--c-------
Confidence 98 4555589999998863 26899999999993 333322 223466777777776533322100 0
Q ss_pred cCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024934 216 IRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 216 ~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~ 253 (260)
+ + ....+|++++.++++.+++++...
T Consensus 125 -------~---~--~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 125 -------G---Y--IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred -------c---e--eccCCCCCccHHHHHHHHHHHHhh
Confidence 0 0 012358889999999999988753
No 38
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.57 E-value=1.2e-13 Score=116.61 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=90.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|||||||++|++......-+.+.+.+++ +.++++.||.+..|.. ..|+.. +.+.|.+||.|||++|
T Consensus 4 ~~~kiLiI~aHP~~~~S~~n~~l~~~~~~--~~~v~~~DL~~~~p~~----------~~d~~~-eq~~l~~aD~iV~~fP 70 (184)
T PRK04930 4 QPPKVLLLYAHPESQDSVANRVLLKPAQQ--LEHVTVHDLYAHYPDF----------FIDIPH-EQALLREHDVIVFQHP 70 (184)
T ss_pred CCCEEEEEECCCCcccCHHHHHHHHHHHc--CCceEEEECcccCCCC----------CCCHHH-HHHHHHhCCEEEEEcC
Confidence 58999999999864322233334444433 4578899998864411 123322 2678999999999999
Q ss_pred ccCCCchHHHHHHHHHhccc-ccC----CCCCCCcEEEEEeeCCCC-----CC-----hHHHHHHHHHHHHhcCcEEecC
Q 024934 138 TRYGCMAAQMKAFFDSTGML-WKE----GKLVGKPAGFFVSTGTQG-----GG-----QETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l-~~~----~~l~gK~~~if~s~G~~~-----Gg-----~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
+||+++|+.||.|+|++... |.. ..|+||++.+++|+|+.. +| .+..+..+...+...||.+++.
T Consensus 71 l~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 71 LYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSP 150 (184)
T ss_pred ccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCc
Confidence 99999999999999998632 321 358999999998887631 11 1223445555667789988874
No 39
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.56 E-value=3.9e-14 Score=119.87 Aligned_cols=134 Identities=23% Similarity=0.284 Sum_probs=96.9
Q ss_pred CeEEEEEecC--chhHHHHHHHHHHHccCCCC-ceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSM--YGHVEGLAKRMKKGVDGVDG-VEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G-~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
|||++|++|. .+.++.+++++.+.+.. .+ ++++.+++..-.++.-.+. ....+.+..+ .+++.+||+|||+|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~-~~~~~~~~~~~~lP~~~~d~~~---~~~p~~v~~~-~~~i~~aD~li~~t 75 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPA-GGEVEVEFDDLDLPLYNEDLEA---DGLPPAVQAL-REAIAAADGLIIAT 75 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcc-cCceEEEecccccCCCCcchhh---ccCCHHHHHH-HHHHHhCCEEEEEC
Confidence 6999999996 57789999999999988 55 4444444421111111110 0011123333 57899999999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG 203 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~ 203 (260)
|+|++++|+.+|+.+|.+..- .|.+|+++++.++|+..|+ .....++...+..++|.+++.+
T Consensus 76 PeYn~s~pg~lKnaiD~l~~~----~~~~Kpv~~~~~s~g~~~~-~~a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 76 PEYNGSYPGALKNAIDWLSRE----ALGGKPVLLLGTSGGGAGG-LRAQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred CccCCCCCHHHHHHHHhCCHh----HhCCCcEEEEecCCCchhH-HHHHHHHHHHHHhcCceecccc
Confidence 999999999999999998642 5899999999988774443 4455778888888999988864
No 40
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.54 E-value=1.9e-14 Score=116.73 Aligned_cols=87 Identities=24% Similarity=0.473 Sum_probs=71.7
Q ss_pred EEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCC
Q 024934 63 FIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGC 142 (260)
Q Consensus 63 lIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~ 142 (260)
||||.|.+|||+++|+.|++.+.+ .+ +.+++.+.. . +..++.++|.||||+|+|.|.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~-~~---~~v~~~~~~------------------~-~~~~~~~yD~vi~gspiy~g~ 57 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGE-EG---ELVDLEKVE------------------E-DEPDLSDYDAVIFGSPIYAGR 57 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhh-hc---cEEEHHhhh------------------h-cccccccCCEEEEEEEEECCc
Confidence 699999999999999999999987 43 444554310 0 135788999999999999999
Q ss_pred chHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC
Q 024934 143 MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ 177 (260)
Q Consensus 143 ~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~ 177 (260)
+++.|+.|+++.. ..|.+|++++|+++++.
T Consensus 58 ~~~~~~~fi~~~~-----~~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 58 IPGEMREFIKKNK-----DNLKNKKVALFSVGGSS 87 (143)
T ss_pred CCHHHHHHHHHHH-----HHHcCCcEEEEEEeCCC
Confidence 9999999999864 25789999999998873
No 41
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.49 E-value=1.5e-13 Score=110.85 Aligned_cols=119 Identities=28% Similarity=0.276 Sum_probs=90.7
Q ss_pred EEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC-CC
Q 024934 64 IVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY-GC 142 (260)
Q Consensus 64 IIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~-g~ 142 (260)
|+|+|++|||++||+.|++++++ .|++++++++.+... . ..++.+++.+||++|||+ |.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~------------------~-~~~~~~~~~~i~~~sT~~~g~ 60 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDD------------------S-PSDLSEYDLLIFGVSTYGEGE 60 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCH------------------H-HHHHCTTSEEEEEEEEETTTE
T ss_pred CEEECCchhHHHHHHHHHHHHHH-cCCceeeechhhhhh------------------h-hhhhhhhceeeEeecccCCCc
Confidence 79999999999999999999998 899999999987411 1 457899999999999998 55
Q ss_pred chHHHHHHHHHhcccc----cCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 143 MAAQMKAFFDSTGMLW----KEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 143 ~~~~mK~flD~~~~l~----~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
+|..++.|+..+...+ ....++++.+++|+.+.+..++--.....+.+.|..+|+.++..
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~ 124 (143)
T PF00258_consen 61 PPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGP 124 (143)
T ss_dssp ESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESS
T ss_pred chhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEEC
Confidence 6655554444433222 12468999999999876643331235688899999999988864
No 42
>PRK08105 flavodoxin; Provisional
Probab=99.46 E-value=1.7e-12 Score=106.34 Aligned_cols=119 Identities=17% Similarity=0.094 Sum_probs=92.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|.||+|+|+|.+|||+.+|+.|++.+.+ .|+++.+.++.+. +.....++|.|||+++|
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~---------------------~~~~~~~~~~vi~~~sT 58 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTA-QGHEVTLFEDPEL---------------------SDWQPYQDELVLVVTST 58 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCceEEechhhC---------------------CchhcccCCeEEEEECC
Confidence 7899999999999999999999999998 8999998887542 11123457999999999
Q ss_pred c-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 139 R-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
| .|.+|..++.|++.+... ...|.|+..++|+.+....-.--.....+.+.|..+|...|.
T Consensus 59 ~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 59 TGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred CCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 9 689999999999987532 236899999999987542111122456778888888888775
No 43
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.44 E-value=7.6e-13 Score=112.33 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=87.9
Q ss_pred CeEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 60 LKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|||||||+.+. +-+..+++.+++.+.+ .|+++...++..+..+....... .....|+... .++|.+||.|||..|.
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~-~~~~v~~~dl~~~~fd~~~~~~d-~~~~~Dv~~E-~e~l~~AD~ivlqfPl 77 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNE-AGHEVALKDLYALGFDPYLTYPD-GEFPIDVKAE-QEKLLWADVIVLQFPL 77 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHH-cchHHHhhhhhhhcCCceeecCc-cCCCCCHHHH-HHHHHhcceEEEEcCc
Confidence 79999999997 7788999999999998 89888887777653332222111 1123445443 7899999999999999
Q ss_pred cCCCchHHHHHHHHHhccc-cc---C-----CCCCCCcEEEEEeeCC
Q 024934 139 RYGCMAAQMKAFFDSTGML-WK---E-----GKLVGKPAGFFVSTGT 176 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l-~~---~-----~~l~gK~~~if~s~G~ 176 (260)
||+++|+.||.|+|++... |. . +.|.||.+.+++|+|.
T Consensus 78 wW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~ 124 (189)
T COG2249 78 WWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGA 124 (189)
T ss_pred hhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCC
Confidence 9999999999999998522 21 1 4699999999999887
No 44
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.41 E-value=4.9e-13 Score=108.57 Aligned_cols=90 Identities=20% Similarity=0.374 Sum_probs=79.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
||+||+|+|.+|+|+++|+.|+..|++ .|++|++.++... ..-++.++|.||+|+|+|
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e-~g~qvdi~dl~~~---------------------~~~~l~~ydavVIgAsI~ 58 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRE-SGIQVDIQDLHAV---------------------EEPALEDYDAVVIGASIR 58 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhh-cCCeeeeeehhhh---------------------hccChhhCceEEEecchh
Confidence 799999999999999999999999999 8999999998762 112688999999999999
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCC
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGT 176 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~ 176 (260)
+|.....++.|+.+... .|..||.++|++.-.
T Consensus 59 ~~h~~~~~~~Fv~k~~e-----~L~~kP~A~f~vnl~ 90 (175)
T COG4635 59 YGHFHEAVQSFVKKHAE-----ALSTKPSAFFSVNLT 90 (175)
T ss_pred hhhhHHHHHHHHHHHHH-----HHhcCCceEEEeehh
Confidence 99999999999998653 588999999998643
No 45
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.39 E-value=1.6e-11 Score=103.08 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=86.1
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYG 141 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g 141 (260)
||||+++++......-+++.+.+.+ . .+|++.+|.+..|.. ..|+... .+.|.+||.|||.+|.||+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~-~-~~v~v~dL~~~~p~~----------~~dv~~e-q~~l~~aD~iV~~fP~~w~ 68 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQART-L-EGVEIRSLYQLYPDF----------NIDIAAE-QEALSRADLIVWQHPMQWY 68 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHh-c-CCeEEEEChhhcCCc----------chhHHHH-HHHHHhCCEEEEEcChhhc
Confidence 9999999865322344444444433 2 258888888764421 1233222 6789999999999999999
Q ss_pred CchHHHHHHHHHhcc-ccc----CCCCCCCcEEEEEeeCCC-----CCCh---HHHHHHHHHHHHhcCcEEecC
Q 024934 142 CMAAQMKAFFDSTGM-LWK----EGKLVGKPAGFFVSTGTQ-----GGGQ---ETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 142 ~~~~~mK~flD~~~~-l~~----~~~l~gK~~~if~s~G~~-----~Gg~---e~~l~~l~~~l~~~gm~vV~~ 202 (260)
++|+.||.|+|++.. -|. ...|+||++.+++|+|+. .+|. +..+..+...+...||.+++.
T Consensus 69 ~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~ 142 (176)
T PRK00871 69 SIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPP 142 (176)
T ss_pred cccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcce
Confidence 999999999999852 232 135899999888888763 1221 223455556667778887764
No 46
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.25 E-value=1.9e-10 Score=97.40 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=97.9
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccC-CCCceEEEEEcCCCCcHH----HhhcCC--CCCC-CC------Cc-cc
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDG-VDGVEGLLYRVPETLTRE----ALDHMK--VPPR-DD------DI-PE 120 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~-~~G~ev~li~l~~~~~~~----~~~~~~--~~~~-~d------d~-~~ 120 (260)
|.|||+|-.|+. +.|.++++++.+.+++ ..+.++...||.+...+. .....+ +... .+ +. ..
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 789999999974 5789999999999976 357788889998764322 111111 1111 00 11 11
Q ss_pred ccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccc---------cCCCCCCCcEEEEEeeCCCCCCh----HHHHHH
Q 024934 121 ISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLW---------KEGKLVGKPAGFFVSTGTQGGGQ----ETTAWT 187 (260)
Q Consensus 121 i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~---------~~~~l~gK~~~if~s~G~~~Gg~----e~~l~~ 187 (260)
+ .+++..||.+||++|.||.++|+++|+|+|++...- ..+.+.||++.++.+.|+..++. +.....
T Consensus 81 l-~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 L-LEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred H-HHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 2 578899999999999999999999999999985321 12578899999999988864432 333455
Q ss_pred HHHHHHhcCcEEe
Q 024934 188 AITQLAHHGMLFV 200 (260)
Q Consensus 188 l~~~l~~~gm~vV 200 (260)
+...|...|+.-+
T Consensus 160 Lr~ilgF~Gitd~ 172 (202)
T COG1182 160 LRTILGFLGITDV 172 (202)
T ss_pred HHHHhhhcCCCcc
Confidence 5556655666433
No 47
>PRK05723 flavodoxin; Provisional
Probab=99.23 E-value=3.7e-10 Score=92.66 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=86.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhc--CEEEEEcc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEA--DGFLFGFP 137 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~A--D~II~GsP 137 (260)
|||.|+|+|.+|||+.+|+.|++.+.+ .|+++.++...+ ..++.++ |.|||+++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~-~g~~~~~~~~~~-----------------------~~~~~~~~~~~li~~~s 56 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKA-AGFEAWHNPRAS-----------------------LQDLQAFAPEALLAVTS 56 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHH-CCCceeecCcCC-----------------------HhHHHhCCCCeEEEEEC
Confidence 689999999999999999999999987 788776533211 2333444 99999999
Q ss_pred ccC-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCC-hHHHHHHHHHHHHhcCcEEec
Q 024934 138 TRY-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG-QETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 138 tY~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg-~e~~l~~l~~~l~~~gm~vV~ 201 (260)
||. |.+|.....|++.+... ....|+|+.+++|+.+-...+. --.....+...|..+|..-|.
T Consensus 57 T~G~Ge~Pd~~~~f~~~L~~~-~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~ 121 (151)
T PRK05723 57 TTGMGELPDNLMPLYSAIRDQ-LPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQ 121 (151)
T ss_pred CCCCCCCchhHHHHHHHHHhc-CccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEee
Confidence 996 88999999999887532 1126899999999986442221 123456778888888876653
No 48
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.23 E-value=3.1e-11 Score=97.92 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccC-CCCceEEEEEcCCCCcHHHhhcCCCCCC--CCCccccc---HhhhhhcC
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDG-VDGVEGLLYRVPETLTREALDHMKVPPR--DDDIPEIS---AADLVEAD 130 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~-~~G~ev~li~l~~~~~~~~~~~~~~~~~--~dd~~~i~---~~~l~~AD 130 (260)
-+||++|.+|... -.-.+|.++.+--++ ..|.+++.+|+.+... ....-...+++ +...+..+ ..++.++|
T Consensus 10 ~~kv~~imGSvR~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL-~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD 88 (199)
T KOG4530|consen 10 LIKVAAIMGSVRKKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPL-INTDLEVNPIKSVDEYYPPVTEAWRQKILEAD 88 (199)
T ss_pred hHHHHHHhhhhhhcccCHHHHHHHHHhhhccCCCCceEEEeccCCcc-ccCCcccCccccccccCcHHHHHHHHHHhhcc
Confidence 5789999999632 233455555543333 4789999999987521 00000001110 11111111 36789999
Q ss_pred EEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 131 GFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
.|+|.||.||+++|+.+|+.+|++.+ .|.|||+.+ +|+|+ +||.. .-.++.+....+.|.+.
T Consensus 89 ~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPali-vSyGG-hGGg~-c~~qL~~v~~fLkm~va 150 (199)
T KOG4530|consen 89 SIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALI-VSYGG-HGGGR-CQYQLRQVGVFLKMHVA 150 (199)
T ss_pred eEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEE-EEecC-CCCch-HHHHHHHHHhhheeeee
Confidence 99999999999999999999999864 678999855 56666 44433 23455555555566643
No 49
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.08 E-value=1.9e-09 Score=106.25 Aligned_cols=120 Identities=13% Similarity=0.005 Sum_probs=96.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|.+|+|+|+|.+||++.+|+.+++.+.+ .|++++++++.+. +.++|.+++.+||+++
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~-~g~~~~v~~~~d~---------------------~~~~L~~~~~vl~v~S 117 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLA-AKLNVNLVNAGDY---------------------KFKQIAQEKLLIVVTS 117 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCCcEEechHhC---------------------CHhHhccCCeEEEEEC
Confidence 48899999999999999999999999988 8999998888663 3567889999999999
Q ss_pred cc-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 138 TR-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 138 tY-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
|| .|.+|..++.|++.+... ....|.|+.+++|+.+.+....--.....+.+.|..+|..-+
T Consensus 118 T~G~Ge~Pdna~~F~~~L~~~-~~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl 180 (600)
T PRK10953 118 TQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERL 180 (600)
T ss_pred CCCCCCCChhHHHHHHHHhhC-cCcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEe
Confidence 99 699999999999987432 123689999999998765321112245677778888888765
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.02 E-value=4.7e-09 Score=103.64 Aligned_cols=120 Identities=17% Similarity=0.077 Sum_probs=94.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.+++|+|+|+|.+||++.+|+.|++.+.+ .|+++++.++.+. +.+++.+++.+||+++
T Consensus 57 ~~~~i~IlygSqTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~---------------------~~~~l~~~~~li~v~S 114 (597)
T TIGR01931 57 QEKRVTILYGSQTGNARRLAKRLAEKLEA-AGFSVRLSSADDY---------------------KFKQLKKERLLLLVIS 114 (597)
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHh-CCCccEEechHHC---------------------CHhhcccCceEEEEeC
Confidence 36899999999999999999999999998 8999999888764 2567888999999999
Q ss_pred cc-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 138 TR-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 138 tY-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
|| .|.+|..++.|++.+... ....|.|+.+++|+.+.+....--.+...+...|..+|...+
T Consensus 115 T~GeGe~Pdna~~F~~~L~~~-~~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri 177 (597)
T TIGR01931 115 TQGEGEPPEEAISFHKFLHSK-KAPKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRL 177 (597)
T ss_pred CCCCCcCCHHHHHHHHHHHhC-CCcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEe
Confidence 99 599999999999987432 123689999999997654221112244667777888888665
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.66 E-value=3.3e-07 Score=73.77 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=47.4
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+.+.|+|+|.+|||+.+++.+... .+.+.+.+. +.+...+-++|.+|||
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~--------~~~i~i~~~-----------------------~~~~~~~~~~lv~PTy 49 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLP--------ATRIPINER-----------------------ERLEVDEPYILITPTY 49 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCc--------ceEEecCCC-----------------------ccccCCCCEEEEEecc
Confidence 457899999999999887765322 234555431 1234568899999999
Q ss_pred C-----CCchHHHHHHHHHh
Q 024934 140 Y-----GCMAAQMKAFFDST 154 (260)
Q Consensus 140 ~-----g~~~~~mK~flD~~ 154 (260)
. |.+|..++.|++..
T Consensus 50 ~~g~~~G~vP~~v~~Fl~~~ 69 (134)
T PRK03600 50 GGGGTAGAVPKQVIRFLNDE 69 (134)
T ss_pred CCCCcCCcccHHHHHHHhcc
Confidence 8 48999999999874
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.43 E-value=2.6e-06 Score=67.64 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=50.8
Q ss_pred EEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC-CC
Q 024934 64 IVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY-GC 142 (260)
Q Consensus 64 IIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~-g~ 142 (260)
|+|.|.+|||+.+++. .|+++..+.+.+. +...+ ++|.|+| |++|. |.
T Consensus 1 IvY~S~TGNte~fv~~--------lg~~~~~i~~~~~---------------------d~~~~-~~~~vli-TyT~G~G~ 49 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEK--------LGFQHIRIPVDET---------------------DDIHV-DQEFVLI-TYTGGFGA 49 (125)
T ss_pred CEEEcccccHHHHHHH--------cCCCcEEeecCCc---------------------chhhc-CCCEEEE-ecCCCCCc
Confidence 6899999999999443 3445544554431 12234 8999988 99995 66
Q ss_pred chHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 143 MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 143 ~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
+|..+..|++.. .++..|+|+|+
T Consensus 50 vP~~~~~Fle~~---------~n~~~gV~gSG 72 (125)
T TIGR00333 50 VPKQTISFLNKK---------HNLLRGVAASG 72 (125)
T ss_pred CCHHHHHHHHhh---------hhcEEEEEEcC
Confidence 999999999964 23777888764
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=97.87 E-value=0.00027 Score=58.15 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCC-CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGV-DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~-~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|.++.|+|.|.+|||+..++.+...+.+. .+..+..+++.+..+ +- .+.+..-.-+|+.+|
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~-----------------~~-~~~~~~~~p~vli~p 62 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIH-----------------ET-TDFFPETEPFVAFLP 62 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccC-----------------cc-ccccccCCCEEEEEe
Confidence 67899999999999999999987665330 133444455443211 00 111334467889999
Q ss_pred cc-CCC----------chHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 138 TR-YGC----------MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 138 tY-~g~----------~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
|| .|+ ++.++..|+..- ..+....|+|++
T Consensus 63 TY~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigs 102 (154)
T PRK02551 63 TYLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGS 102 (154)
T ss_pred eecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEee
Confidence 99 555 677888888532 124445566665
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.85 E-value=8.4e-05 Score=70.54 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=88.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+||+|+|+|.||+-.-+|+.|...+.. .|..+.+..+.++ +.++|.+.+.|||.+.|-
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r-~~~~~~V~s~Dey---------------------d~~~ll~~~~vvFVcSTT 58 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHR-RGLQCLVMSMDEY---------------------DVEKLLDERLVVFVCSTT 58 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHh-ccCCceEeecccc---------------------CHhHhccCceEEEEEecC
Confidence 689999999999999999999999988 8888888777664 367888999999988887
Q ss_pred C-CCchHHHHHHHHHhccc-ccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 140 Y-GCMAAQMKAFFDSTGML-WKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 140 ~-g~~~~~mK~flD~~~~l-~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
. |.+|..||+|+..+.+. .-...|.+-..++++-+.+.--.-....+.+..-|.++|..-+
T Consensus 59 GqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~ 121 (574)
T KOG1159|consen 59 GQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSV 121 (574)
T ss_pred CCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccc
Confidence 5 99999999987765421 0012456677788876544222223455677777888877544
No 55
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=96.91 E-value=0.0033 Score=49.73 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=36.2
Q ss_pred EEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC-CC
Q 024934 64 IVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY-GC 142 (260)
Q Consensus 64 IIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~-g~ 142 (260)
|+|.|.+|||++.++.+...+.. ..+.+.+. .+.+.-.+-+|+-+|||. |.
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~------~~i~~~~~----------------------~~~~~~~ep~vLitpTy~~G~ 52 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPA------IRIPIREI----------------------SPDLEVDEPFVLITPTYGFGE 52 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SE------EEE-SSCT----------------------TSTS--SS-EEEEEE-BTTTB
T ss_pred CEEECCCcCHHHHHHHHcccchh------cccccccc----------------------cccccCCCCEEEEecccCCCC
Confidence 78999999999999887665432 22333221 112334466888999997 44
Q ss_pred ----chHHHHHHHHH
Q 024934 143 ----MAAQMKAFFDS 153 (260)
Q Consensus 143 ----~~~~mK~flD~ 153 (260)
+|.++..||+.
T Consensus 53 ~~~~vp~~v~~FL~~ 67 (122)
T PF07972_consen 53 NDGGVPKQVIRFLEN 67 (122)
T ss_dssp SSTSS-HHHHHHHHS
T ss_pred CCCCCCHHHHHHHHH
Confidence 89999999993
No 56
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=96.08 E-value=0.014 Score=43.89 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=32.7
Q ss_pred CC-eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KL-KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~-KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
|+ |||++++|..|.+..++..+.+.+++ .|+++++...
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~ 39 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQC 39 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 44 89999999988888889999999998 8998887764
No 57
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=95.72 E-value=0.036 Score=41.79 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++|||+++++.-+ |..+++.+.+.+++ .|+++++....-. ++ .+.+.++|.|+++..
T Consensus 2 ~~~~ILl~C~~G~s-SS~l~~k~~~~~~~-~gi~~~v~a~~~~-------------------~~-~~~~~~~Dvill~pq 59 (95)
T TIGR00853 2 NETNILLLCAAGMS-TSLLVNKMNKAAEE-YGVPVKIAAGSYG-------------------AA-GEKLDDADVVLLAPQ 59 (95)
T ss_pred CccEEEEECCCchh-HHHHHHHHHHHHHH-CCCcEEEEEecHH-------------------HH-HhhcCCCCEEEECch
Confidence 46899999998765 45689999999998 8998877665421 22 345678998887655
Q ss_pred ccC
Q 024934 138 TRY 140 (260)
Q Consensus 138 tY~ 140 (260)
+-+
T Consensus 60 i~~ 62 (95)
T TIGR00853 60 VAY 62 (95)
T ss_pred HHH
Confidence 444
No 58
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.31 Score=39.18 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=42.1
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
-++|+|.|.+|||+.-++.+. +.+ ++++... . .+.+.=-+-.|+.+|||.
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~~--------~~I~~~~-------------------~-~~~~~v~epyvlitpTyg 51 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LPA--------VRIPLNR-------------------E-EDPIEVDEPYVLITPTYG 51 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CCc--------eeccccc-------------------c-cCCccCCCCeEEEecccc
Confidence 356778888999999888755 222 2222210 0 122344477899999998
Q ss_pred CC-----chHHHHHHHHH
Q 024934 141 GC-----MAAQMKAFFDS 153 (260)
Q Consensus 141 g~-----~~~~mK~flD~ 153 (260)
++ +|.++..||..
T Consensus 52 ~G~~~~~Vp~~vi~FLn~ 69 (141)
T COG1780 52 GGGTVGAVPKQVIRFLNN 69 (141)
T ss_pred CCCccCccCHHHHHHhcc
Confidence 55 89999999963
No 59
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=95.26 E-value=0.14 Score=39.02 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||++|+.+. -.|..|++.+.+.+++ .|.++++.-+.+. ++ .+.+.++|.+++|
T Consensus 1 Mk~IlLvC~aG-mSTSlLV~Km~~aA~~-kg~~~~I~A~s~~-------------------e~-~~~~~~~DvvLlG--- 55 (102)
T COG1440 1 MKKILLVCAAG-MSTSLLVTKMKKAAES-KGKDVTIEAYSET-------------------EL-SEYIDNADVVLLG--- 55 (102)
T ss_pred CceEEEEecCC-CcHHHHHHHHHHHHHh-CCCceEEEEechh-------------------HH-HHhhhcCCEEEEC---
Confidence 78999998663 3478899999999998 8999988877763 23 4667899999997
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe--eCCCCC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS--TGTQGG 179 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s--~G~~~G 179 (260)
+|++..++.+... -.-+|+|+.++-+ ||...|
T Consensus 56 ------PQv~y~~~~~~~~---~~~~giPV~vI~~~dYG~mnG 89 (102)
T COG1440 56 ------PQVRYMLKQLKEA---AEEKGIPVEVIDMLDYGMMNG 89 (102)
T ss_pred ------hHHHHHHHHHHHH---hcccCCCeEEeCHHHccCcCc
Confidence 4555555554321 1235789888765 455444
No 60
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.058 Score=53.49 Aligned_cols=93 Identities=20% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhh-cCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVE-ADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~-AD~II~Gs 136 (260)
...+++|+|+|.+||-+.+|+.+.+.+.. .|..+.+.++.+..+ .++.+ =..+++.+
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~-~g~~~~~~~~~~~~~---------------------~~~~~~~~~~~i~s 103 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEA-AGLQVLVASLDDYKP---------------------KDIAEERLLLFVVS 103 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHh-cCCceeecchhhcCh---------------------hhHHhhhceEEEEc
Confidence 57789999999999999999999999998 888888888877522 22222 24566666
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
....|.+|..+..|+..+... ....|.+-..++++.
T Consensus 104 t~geGe~p~na~~f~~~l~~~-~a~~L~~l~yav~~l 139 (587)
T COG0369 104 TQGEGEPPDNAVAFHEFLKGK-KAPKLDGLRYAVLGL 139 (587)
T ss_pred cccCCCCCCchHHHHHHhccc-ccccccccchhhhcC
Confidence 677799999999999987532 122344444444443
No 61
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=95.14 E-value=0.11 Score=40.83 Aligned_cols=64 Identities=22% Similarity=0.109 Sum_probs=48.0
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
++||+-|-.-++| ||...|++|.+...+ .|+++.+--=...- --+.++.+++..||+|||.+
T Consensus 1 ~~~IVAVTACPtGIAHTyMAAeaLe~~A~~-~g~~IKVETqGs~G---------------~eN~LT~edI~~Ad~VI~Aa 64 (122)
T COG1445 1 MKKIVAVTACPTGIAHTYMAAEALEKAAKK-LGVEIKVETQGAVG---------------IENRLTAEDIAAADVVILAA 64 (122)
T ss_pred CccEEEEecCCchHHHHHHHHHHHHHHHHH-cCCeEEEEcCCccc---------------ccCcCCHHHHHhCCEEEEEe
Confidence 5788888888988 999999999999998 89887653322110 01235689999999999987
Q ss_pred cc
Q 024934 137 PT 138 (260)
Q Consensus 137 Pt 138 (260)
=+
T Consensus 65 D~ 66 (122)
T COG1445 65 DI 66 (122)
T ss_pred cc
Confidence 43
No 62
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=94.86 E-value=0.17 Score=39.55 Aligned_cols=64 Identities=16% Similarity=0.010 Sum_probs=46.6
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
|||+++|-.++.| ||...++.+.+..++ .|+++.+--=...- -...++.+++..||.||+..
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~-~G~~i~VE~qg~~g---------------~~~~lt~~~i~~Ad~VIia~ 65 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQL-EKWGVKIETQGALG---------------TENRLTDEDIRRADVVLLIT 65 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcC---------------cCCCCCHHHHHhCCEEEEEe
Confidence 6889999988876 788888999999988 89877643222110 01224468899999999986
Q ss_pred cc
Q 024934 137 PT 138 (260)
Q Consensus 137 Pt 138 (260)
-+
T Consensus 66 d~ 67 (114)
T PRK10427 66 DI 67 (114)
T ss_pred cC
Confidence 65
No 63
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=94.44 E-value=0.52 Score=36.19 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+|||+++++.-| |..|++.+.+..++ .|+++++-..... .. .+...++|.|+++
T Consensus 3 ~kkIllvC~~G~s-TSll~~km~~~~~~-~gi~~~V~A~~~~-------------------~~-~~~~~~~DviLl~--- 57 (106)
T PRK10499 3 KKHIYLFCSAGMS-TSLLVSKMRAQAEK-YEVPVIIEAFPET-------------------LA-GEKGQNADVVLLG--- 57 (106)
T ss_pred CCEEEEECCCCcc-HHHHHHHHHHHHHH-CCCCEEEEEeecc-------------------hh-hccccCCCEEEEC---
Confidence 5789999977544 56788888888877 7888776554321 11 2345688988764
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe--eCCCCCChHHHHHHHHHHHHh
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS--TGTQGGGQETTAWTAITQLAH 194 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s--~G~~~Gg~e~~l~~l~~~l~~ 194 (260)
++++..++.+.. ...++|+.++-. ||... .+..+....+.+..
T Consensus 58 ------Pqi~~~~~~i~~-----~~~~~pV~~I~~~~Yg~~d--g~~vl~~a~~~~~~ 102 (106)
T PRK10499 58 ------PQIAYMLPEIQR-----LLPNKPVEVIDSLLYGKVD--GLGVLKAAVAAIKK 102 (106)
T ss_pred ------HHHHHHHHHHHh-----hcCCCCEEEEChHhhhcCC--HHHHHHHHHHHHHH
Confidence 567777776632 234467766654 44422 34455555555544
No 64
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=94.43 E-value=0.23 Score=36.29 Aligned_cols=59 Identities=25% Similarity=0.198 Sum_probs=45.0
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
||+++++|.-|.+..+++.+.+.+++ .|++++....... +. .....+||.|+.+..+-+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~-~gi~~~~~~~~~~-------------------~~-~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE-LGIEVEVSAGSIL-------------------EV-EEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH-TTECEEEEEEETT-------------------TH-HHHHTT-SEEEEEESSGG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh-ccCceEEEEeccc-------------------cc-ccccCCCcEEEEcCccch
Confidence 79999999988888888999999999 8988877766521 01 334566999999887765
No 65
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=93.71 E-value=0.13 Score=39.42 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=30.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+|||+++++.-+ |..+++.+.+.+++ .|+++++....
T Consensus 1 MkkILlvCg~G~S-TSlla~k~k~~~~e-~gi~~~i~a~~ 38 (104)
T PRK09590 1 MKKALIICAAGMS-SSMMAKKTTEYLKE-QGKDIEVDAIT 38 (104)
T ss_pred CcEEEEECCCchH-HHHHHHHHHHHHHH-CCCceEEEEec
Confidence 7899999988764 44899999999988 89887765544
No 66
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=93.42 E-value=0.11 Score=39.45 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=52.4
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
||++++++. -.|..+++.+.+.+++ .|+++++...... ++ .+.+.++|.|+++.
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~-~gi~~~i~a~~~~-------------------e~-~~~~~~~Dvill~P---- 55 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE-RGVPLEAAAGAYG-------------------SH-YDMIPDYDLVILAP---- 55 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH-CCCcEEEEEeeHH-------------------HH-HHhccCCCEEEEcC----
Confidence 789999554 5678899999999999 8998887765432 23 45678899777654
Q ss_pred CCchHHHHHHHHHhcccccCCCCCCCcEEEEE
Q 024934 141 GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFV 172 (260)
Q Consensus 141 g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~ 172 (260)
+++..++.+.... .-.|+|+.++-
T Consensus 56 -----Qv~~~~~~i~~~~---~~~~ipv~~I~ 79 (99)
T cd05565 56 -----QMASYYDELKKDT---DRLGIKLVTTT 79 (99)
T ss_pred -----hHHHHHHHHHHHh---hhcCCCEEEeC
Confidence 4455555543210 12477876654
No 67
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=92.13 E-value=0.34 Score=36.45 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=32.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCc--eEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV--EGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~--ev~li~l~~ 99 (260)
|+|||+++++.-|.+..+...+.+.+++ .|+ +++...+.+
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~-~gi~~~~~~~~v~~ 42 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKE-LGIDVDVEQCAVDE 42 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHH-cCCCceeeeEEecc
Confidence 6899999999999899999999999998 887 444444443
No 68
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=91.62 E-value=0.41 Score=34.98 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=29.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLY 95 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li 95 (260)
+||++++++..|.+..++..+.+.+.+ .++.+++-
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~ 35 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVE 35 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEE
Confidence 489999999999999999999999977 77655543
No 69
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=90.81 E-value=1.7 Score=37.16 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred eEEEEEecCch----hHHHHHHHHHHHcc-CCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 61 KIFIVFYSMYG----HVEGLAKRMKKGVD-GVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 61 KVlIIy~S~~G----nT~~lA~~i~~~l~-~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
|||||++...| ......+.+++-++ + .++++++.+=.+ .++.+.|..||+|||-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~-~~~~v~~~~~~~--------------------~~~~~~L~~~Dvvv~~ 59 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES-EGFEVTVTEDPD--------------------DLTPENLKGYDVVVFY 59 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT-TCEEEEECCSGG--------------------CTSHHCHCT-SEEEEE
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC-CCEEEEEEeCcc--------------------cCChhHhcCCCEEEEE
Confidence 79999988422 22356666777776 4 677776543211 2335679999999987
Q ss_pred ccccCCCchHHHHHHHHHh
Q 024934 136 FPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~ 154 (260)
+-.-.---..+.+.|.+.+
T Consensus 60 ~~~~~~l~~~~~~al~~~v 78 (217)
T PF06283_consen 60 NTGGDELTDEQRAALRDYV 78 (217)
T ss_dssp -SSCCGS-HHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHH
Confidence 7651112456777777766
No 70
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=90.69 E-value=0.72 Score=39.24 Aligned_cols=47 Identities=21% Similarity=0.497 Sum_probs=32.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|||+||-+. +||+..+++++.+ .|+++++++ . .+++.++|+|||+.+
T Consensus 1 ~~~~v~~~~-~~~~~~~~~~l~~-----~G~~~~~~~--~-----------------------~~~~~~~d~iii~G~ 47 (200)
T PRK13143 1 MMIVIIDYG-VGNLRSVSKALER-----AGAEVVITS--D-----------------------PEEILDADGIVLPGV 47 (200)
T ss_pred CeEEEEECC-CccHHHHHHHHHH-----CCCeEEEEC--C-----------------------HHHHccCCEEEECCC
Confidence 688888866 7787777666444 577777663 1 235678999999774
No 71
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=88.99 E-value=0.8 Score=34.38 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=49.6
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
|||+++++.-+.+ .|++.+.+.+++ .|+++++....- .++ .+...++|.|++ +
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~-~~~~~~v~~~~~-------------------~~~-~~~~~~~Diil~-~---- 53 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK-RGIDAEIEAVPE-------------------SEL-EEYIDDADVVLL-G---- 53 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH-CCCceEEEEecH-------------------HHH-HHhcCCCCEEEE-C----
Confidence 6899998865544 689999999998 888776655532 122 345678896655 3
Q ss_pred CCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 141 GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 141 g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
++++..++.+... -...++|+.++-.
T Consensus 54 ----Pqv~~~~~~i~~~---~~~~~~pv~~I~~ 79 (96)
T cd05564 54 ----PQVRYMLDEVKKK---AAEYGIPVAVIDM 79 (96)
T ss_pred ----hhHHHHHHHHHHH---hccCCCcEEEcCh
Confidence 4455555554311 0235677766543
No 72
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=88.09 E-value=0.96 Score=44.90 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=33.8
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLY 95 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li 95 (260)
..+++||+++++|.-|.+..++..+++.+++ .|+++++.
T Consensus 503 ~~k~mKILvaCGsGiGTStmva~kIkk~Lke-~GI~veV~ 541 (602)
T PRK09548 503 GGKPVRILAVCGQGQGSSMMMKMKIKKYLDK-RGIPIIMD 541 (602)
T ss_pred cCcccEEEEECCCCchHHHHHHHHHHHHHHH-cCCCeEEE
Confidence 3478899999999999999999999999999 89876543
No 73
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=86.71 E-value=2.6 Score=40.97 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.||++.|-.+++| ||...++.+.+..++ .|+++++-.=...- -.+.++.+++.+||.||+.
T Consensus 3 ~~kivaVtacp~GiAht~mAaeaL~~aA~~-~G~~i~VEtqg~~g---------------~~~~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 3 SLRIVAITNCPAGIAHTYMVAEALEQKARS-LGHTIKVETQGSSG---------------VENRLSSEEIAAADYVILA 65 (482)
T ss_pred cceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcc---------------CCCCCCHHHHHhCCEEEEe
Confidence 4699999888877 788888999999988 89877643222110 1122456889999999998
No 74
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=86.48 E-value=3.6 Score=30.84 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=40.2
Q ss_pred EEEEecCc--hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 63 FIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 63 lIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
++|...+. -++..+++.+.+.+++ .|+++.+..-...- -...++.+++.+||.||+..-+-
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~-~g~~~~ve~~~~~g---------------~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKK-LGWEIKVETQGSLG---------------IENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecCcC---------------ccCcCCHHHHhhCCEEEEecCCC
Confidence 34444444 4777888999999998 89887654332210 01223357899999999987654
No 75
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=86.16 E-value=1.8 Score=31.64 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=30.1
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
+||+++++|..|.+..++..+.+.+++ .+...++...
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~-~~~~~~v~~~ 37 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKK-AGLEIPVTNS 37 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEc
Confidence 589999999999888889999999987 7766555443
No 76
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=86.15 E-value=3.6 Score=30.26 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=39.1
Q ss_pred EEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 65 VFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 65 Iy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|-.++.| ||...++.+.+..++ .|+++.+--=...- -.+.++.+++.+||.||+..-+
T Consensus 3 vtacp~G~Aht~lAae~L~~aA~~-~G~~i~VE~qg~~g---------------~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 3 VTACPTGIAHTFMAAEALEKAAKK-RGWEVKVETQGSVG---------------AQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred EecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcC---------------ccCCCCHHHHHhCCEEEEeccC
Confidence 3445555 788888999999988 89877643322210 0122446889999999998654
No 77
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=84.85 E-value=3.5 Score=40.91 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=47.4
Q ss_pred CCCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
..+|++.|-.+++| ||...++.+.+..++ .|+++.+-.=...- ..+.++.+++.+||.||+.
T Consensus 102 ~~~kivaVtacptGiAht~mAAeaL~~aA~~-~G~~i~VEtqg~~g---------------~~n~lt~~~i~~Ad~VIia 165 (563)
T PRK10712 102 GPKRVVAVTACPTGVAHTFMAAEAIETEAKK-RGWWVKVETRGSVG---------------AGNAITPEEVAAADLVIVA 165 (563)
T ss_pred ccccEEEEecCCCchhHHHHHHHHHHHHHHH-CCCeEEEEecCCcc---------------cCCCCCHHHHHhCCEEEEe
Confidence 46789999988887 888888999999988 89877643222110 1122456889999999998
Q ss_pred ccc
Q 024934 136 FPT 138 (260)
Q Consensus 136 sPt 138 (260)
.-+
T Consensus 166 ~d~ 168 (563)
T PRK10712 166 ADI 168 (563)
T ss_pred cCC
Confidence 754
No 78
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=84.77 E-value=4.1 Score=35.09 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=34.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||||.||-|. -||...+++++.. .|+++.+++- .+++.++|+||+.-|-
T Consensus 1 ~~~v~iid~~-~GN~~sl~~al~~-----~g~~v~vv~~-------------------------~~~l~~~d~iIlPG~g 49 (210)
T CHL00188 1 MMKIGIIDYS-MGNLHSVSRAIQQ-----AGQQPCIINS-------------------------ESELAQVHALVLPGVG 49 (210)
T ss_pred CcEEEEEEcC-CccHHHHHHHHHH-----cCCcEEEEcC-------------------------HHHhhhCCEEEECCCC
Confidence 6889888765 6788777777654 4667776642 2345679999987754
Q ss_pred c
Q 024934 139 R 139 (260)
Q Consensus 139 Y 139 (260)
-
T Consensus 50 ~ 50 (210)
T CHL00188 50 S 50 (210)
T ss_pred c
Confidence 4
No 79
>PRK06490 glutamine amidotransferase; Provisional
Probab=84.60 E-value=4.3 Score=35.60 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=27.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.|+||+||-.+..++...+++.+. + .|.++++++..
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~----~-~g~~~~v~~~~ 41 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQ----E-RGYPLDIRRPR 41 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHH----H-CCCceEEEecc
Confidence 599999999888777777766654 3 57788888765
No 80
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=84.38 E-value=2.8 Score=29.18 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=26.2
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceE
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEG 92 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev 92 (260)
||++++.+..|.+..+++.+.+.+.+ .+...
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~-~~~~~ 31 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKE-LGIEV 31 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHH-CCCeE
Confidence 58888888889999999999999987 66643
No 81
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=84.25 E-value=2 Score=36.84 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
||||.||.|- .||...+++++.+ .|.++++..+.+ .+++.++|+|||.-
T Consensus 1 ~~~~~iid~g-~gn~~s~~~al~~-----~g~~~~v~~~~~-----------------------~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MMTVAIIDYG-SGNLRSAAKALER-----AGAGADVVVTAD-----------------------PDAVAAADRVVLPG 49 (209)
T ss_pred CCeEEEEECC-CChHHHHHHHHHH-----cCCCccEEEECC-----------------------HHHhcCCCEEEECC
Confidence 6899988865 5777777776554 355332222222 46688999999955
No 82
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=83.55 E-value=5.5 Score=38.26 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=60.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.+.|--|+|.|.+|.-++.|+.+.+.+.+ ...-+.++++. +. ..++.+--.+++..|
T Consensus 45 ~~~~~~vfy~s~~GtA~~~A~~~~e~~~s-ld~~~~llnl~-y~---------------------~~d~pen~~~~lv~~ 101 (601)
T KOG1160|consen 45 GLIKSKVFYSSLTGTAKKAAKSVHEKLKS-LDELPKLLNLD-YS---------------------DFDVPENALYFLVLP 101 (601)
T ss_pred cCccceEEEEeccchHHHHHHHHHHHHHh-cccchhhcCCC-CC---------------------ccCCCcceEEEEEec
Confidence 35555889999999999999999999988 55556666664 21 112334456677788
Q ss_pred ccCCCchHHHHHHHHHhcccc-----cCCCCCCCcEEEEEeeC
Q 024934 138 TRYGCMAAQMKAFFDSTGMLW-----KEGKLVGKPAGFFVSTG 175 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~-----~~~~l~gK~~~if~s~G 175 (260)
-|-+..| +.-|+..+..-. ....|+|-..++|+.+.
T Consensus 102 ~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~ 142 (601)
T KOG1160|consen 102 SYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGD 142 (601)
T ss_pred ccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccc
Confidence 7877776 455555543210 12346777777777643
No 83
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=83.16 E-value=1.8 Score=40.49 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=31.9
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCC---CceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVD---GVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~---G~ev~li~l~~~ 100 (260)
.||||||++.|. .|| ...|++|++.+++ . +++++++|+-+.
T Consensus 4 ~~~~vlil~~~~G~GH-~~aA~al~~~~~~-~~~~~~~~~~~D~~~~ 48 (391)
T PRK13608 4 QNKKILIITGSFGNGH-MQVTQSIVNQLND-MNLDHLSVIEHDLFME 48 (391)
T ss_pred CCceEEEEECCCCchH-HHHHHHHHHHHHh-hCCCCceEEEeehHHh
Confidence 588999999886 577 6699999999976 3 367777776544
No 84
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.80 E-value=38 Score=30.93 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=34.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.....-.+...++...+.+++ .|++.+++++.+.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 73 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEE-AGIRSLEHRLPAD 73 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4578888877666778888899999988 8999999999865
No 85
>PRK08250 glutamine amidotransferase; Provisional
Probab=81.33 E-value=7 Score=34.14 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=34.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Eccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsPt 138 (260)
|||+||.....-....+...+ ++ .|++++++++..-. . + ..++.++|+||+ |+|-
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~----~~-~g~~~~~~~~~~g~---------------~---~-p~~~~~~d~vii~GGp~ 56 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWA----EN-RGYDISYSRVYAGE---------------A---L-PENADGFDLLIVMGGPQ 56 (235)
T ss_pred CeEEEEecCCCCCchHHHHHH----HH-CCCeEEEEEccCCC---------------C---C-CCCccccCEEEECCCCC
Confidence 589999988754434444444 33 57888888865421 1 1 224568999877 7764
Q ss_pred c
Q 024934 139 R 139 (260)
Q Consensus 139 Y 139 (260)
.
T Consensus 57 ~ 57 (235)
T PRK08250 57 S 57 (235)
T ss_pred C
Confidence 3
No 86
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=80.23 E-value=7.2 Score=34.97 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred CeEEEEEecC---chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSM---YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|||+|+++-. +--+-+-++.+++.|++ .|.++++++..+
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~ 42 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDE 42 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCc
Confidence 5899999764 33355678889999988 899999998764
No 87
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=79.95 E-value=4.2 Score=29.28 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=27.0
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEE
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGL 93 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~ 93 (260)
||++++++..|.+..+...+.+.+.+ .++...
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~-~~i~~~ 32 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKE-LGIEAE 32 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHH-CCCcEE
Confidence 68999999999999999999999977 676543
No 88
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=79.72 E-value=4.1 Score=28.98 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=24.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDG 86 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~ 86 (260)
.|+++|+++..|.+..++..+.+.+.+
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~ 27 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPE 27 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999976
No 89
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=79.71 E-value=9.2 Score=32.31 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred HHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 77 AKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 77 A~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
+..+.+.++. .|++++++++.+ .+++.++|+|||...
T Consensus 16 ~~~~~~~l~~-~g~~~~~~~~~~-----------------------~~~l~~~d~iii~GG 52 (200)
T PRK13527 16 IDALKRALDE-LGIDGEVVEVRR-----------------------PGDLPDCDALIIPGG 52 (200)
T ss_pred HHHHHHHHHh-cCCCeEEEEeCC-----------------------hHHhccCCEEEECCC
Confidence 3334444555 677888887753 345678999988764
No 90
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.51 E-value=48 Score=30.03 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=34.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 73 (284)
T PRK14177 33 IPKLATILVGNNPASETYVSMKVKACHK-VGMGSEMIRLKEQ 73 (284)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 3577788877777788889999999999 8999999999875
No 91
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.77 E-value=51 Score=29.87 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEK-VGIYSELYEFPAD 72 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577777766666677888898999988 8999999999875
No 92
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.07 E-value=55 Score=29.83 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=34.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|.......+...++...+.+++ .|++++++++.+..
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKE-AGMASFEHKLPADT 73 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4578888877777778889999999998 89999999998653
No 93
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=77.97 E-value=24 Score=30.52 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=48.4
Q ss_pred CCeEEEEEecC--------chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcC
Q 024934 59 KLKIFIVFYSM--------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEAD 130 (260)
Q Consensus 59 m~KVlIIy~S~--------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD 130 (260)
.+|+++++... ||+-. +.+..-+.+ .|.+.++|++.+- ++|. .+++..||
T Consensus 4 ~kr~Alf~at~dsefvk~~yGgy~---nvfvsllg~-ege~wd~frV~~g----------------efP~--~~Dl~ky~ 61 (245)
T KOG3179|consen 4 QKRIALFLATPDSEFVKKAYGGYF---NVFVSLLGD-EGEQWDLFRVIDG----------------EFPQ--EEDLEKYD 61 (245)
T ss_pred ceeEEEEecCCchhhhhhhhcCHH---HHHHHHhcc-cCceeEEEEEecC----------------CCCC--hhhhhhhc
Confidence 46788888664 45533 344455666 7889999999863 3333 47888999
Q ss_pred EEEEEcccc--CCCchHHHH--HHHHHh
Q 024934 131 GFLFGFPTR--YGCMAAQMK--AFFDST 154 (260)
Q Consensus 131 ~II~GsPtY--~g~~~~~mK--~flD~~ 154 (260)
+|++...-| +....+.+| .|+..+
T Consensus 62 gfvIsGS~~dAf~d~dWI~KLcs~~kkl 89 (245)
T KOG3179|consen 62 GFVISGSKHDAFSDADWIKKLCSFVKKL 89 (245)
T ss_pred eEEEeCCcccccccchHHHHHHHHHHHH
Confidence 998876666 455555544 344443
No 94
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=77.88 E-value=14 Score=32.98 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=36.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
++||+|+.+....+-+.+++ .+++ .|++++++.+.+.. +. ...+.++|+|||.-.
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~----Al~~-aG~~v~~v~~~~~~------------------~~-~~~l~~~DgLvipGG 57 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVK----AFRR-LGVEPEYVHINDLA------------------AE-RKSVSDYDCLVIPGG 57 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHH----HHHH-CCCcEEEEeecccc------------------cc-ccchhhCCEEEECCC
Confidence 57899998766555554544 4444 57888888775420 01 245789999988776
No 95
>PRK07053 glutamine amidotransferase; Provisional
Probab=77.01 E-value=6.5 Score=34.36 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=37.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Ec
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-Gs 136 (260)
.|++|+||-.+..-+--.+++.+ ++ .|.+++++++.+. +.+ ..++.++|+||+ |+
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L----~~-~g~~~~v~~~~~~----------------~~~---~~~~~~~d~lii~Gg 56 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVL----GA-RGYRVRYVDVGVD----------------DLE---TLDALEPDLLVVLGG 56 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHH----HH-CCCeEEEEecCCC----------------ccC---CCCccCCCEEEECCC
Confidence 38889999999865555555554 44 6888999887542 110 123457898877 76
Q ss_pred ccc
Q 024934 137 PTR 139 (260)
Q Consensus 137 PtY 139 (260)
|.-
T Consensus 57 p~~ 59 (234)
T PRK07053 57 PIG 59 (234)
T ss_pred CCC
Confidence 643
No 96
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=76.19 E-value=7.5 Score=33.24 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||||++...+.. .. .+.+.+++ .|+++..+.+-+..+.. .+.. ......+.++|.|||.||.
T Consensus 1 ~~~ilitr~~~~--~~----~l~~~l~~-~G~~v~~~p~~~~~~~~----------~~~~-~~~~~~~~~~d~iiftS~~ 62 (249)
T PRK05928 1 MMKILVTRPSPK--AE----ELVELLRE-LGFVALHFPLIEIEPGR----------QLPQ-LAAQLAALGADWVIFTSKN 62 (249)
T ss_pred CCEEEEeCCHHH--HH----HHHHHHHH-cCCCEEEeccEEEecCC----------CcCh-HHHHhhCCCCCEEEEECHH
Confidence 688888764432 23 33444555 67777665554432100 0000 1113567899999999963
Q ss_pred cCCCchHHHHHHHHHhc
Q 024934 139 RYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~ 155 (260)
.++.|++.+.
T Consensus 63 -------av~~~~~~~~ 72 (249)
T PRK05928 63 -------AVEFLLSALK 72 (249)
T ss_pred -------HHHHHHHHHH
Confidence 5566666653
No 97
>PRK06455 riboflavin synthase; Provisional
Probab=75.36 E-value=45 Score=27.48 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCC-CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcCEEE-
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGV-DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEADGFL- 133 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~-~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD~II- 133 (260)
|+||.||...-+- ..|.+...+.|++. .+++++++.++... ++|.+ ..++ ..||+||
T Consensus 1 ~~kigIV~s~fn~--~~L~~gAi~~L~~~g~~~~I~v~~VPGa~---------------ELP~a-akkL~~~~~yDaVIa 62 (155)
T PRK06455 1 MMKIGIADTTFAR--VDMGSAAIDELRKLDPSAKIIRYTVPGIK---------------DLPVA-AKKLIEEEGCDIVMA 62 (155)
T ss_pred CcEEEEEEEecch--HHHHHHHHHHHHhcCCCCceEEEECCCHH---------------HHHHH-HHHHHhcCCCCEEEE
Confidence 7899998854322 36777777777661 23678888888642 22222 3333 3689885
Q ss_pred EEcc----ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCC
Q 024934 134 FGFP----TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGT 176 (260)
Q Consensus 134 ~GsP----tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~ 176 (260)
||++ +|-+-.....+..++- +...++|++.+.+.-.
T Consensus 63 LG~VG~t~h~d~Va~~vS~GL~~l-------sL~t~~PVi~v~vhed 102 (155)
T PRK06455 63 LGMPGPTEKDKYCAHEASIGLIMA-------QLMTNKHIIEVFVHED 102 (155)
T ss_pred ecceeccCcchhHHHHHHHHHHHH-------HhhhCCCEEEEEeccc
Confidence 4544 2222222222223332 2347899988877654
No 98
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.28 E-value=64 Score=29.22 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=34.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|......-+...++...+.+++ .|++++++++.+.
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEE-VGITSVEHHLPAT 70 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4578888877777778889999999998 8999999999865
No 99
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=74.71 E-value=7.4 Score=32.62 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=32.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEE-EEccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFL-FGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II-~GsPt 138 (260)
||||||-.-. .-|..+++.+ ++ .|+++++++..+. +.+++.++|+|| .|.|-
T Consensus 2 ~~iliid~~d-sf~~~i~~~l----~~-~g~~~~v~~~~~~---------------------~~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 2 TKLLIINNHD-SFTFNLVDLI----RK-LGVPMQVVNVEDL---------------------DLDEVENFSHILISPGPD 54 (190)
T ss_pred cEEEEEeCCC-chHHHHHHHH----HH-cCCcEEEEECCcc---------------------ChhHhccCCEEEECCCCC
Confidence 7899887332 2233355554 34 4778888887542 135567899998 55774
No 100
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=74.30 E-value=6.9 Score=33.10 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=30.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
|||+||-|- .||...+++++. + .|+++++++ + .+++.++|+|||
T Consensus 1 m~i~iid~g-~gn~~s~~~~l~----~-~g~~~~~v~--~-----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTG-CANLSSVKFAIE----R-LGYEPVVSR--D-----------------------PDVILAADKLFL 44 (196)
T ss_pred CeEEEEeCC-CchHHHHHHHHH----H-CCCeEEEEC--C-----------------------HHHhCCCCEEEE
Confidence 688988865 577787777544 3 466776663 2 345678899998
No 101
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=73.62 E-value=8.9 Score=31.06 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=34.0
Q ss_pred cCCCCeEEEEEecCc-hhHHHHHHHHHHHccCCCCce---EEEEEcCCC
Q 024934 56 EITKLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVE---GLLYRVPET 100 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~e---v~li~l~~~ 100 (260)
+....||+||..+-+ --|+.|.+-..+.|.. .|++ +++++++..
T Consensus 4 ~~~~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPGa 51 (141)
T PLN02404 4 DGEGLRFGVVVARFNEIITKNLLEGALETFKR-YSVKEENIDVVWVPGS 51 (141)
T ss_pred CCCCCEEEEEEecCcHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCcH
Confidence 345789999997765 4588899999999988 7874 678888764
No 102
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.51 E-value=73 Score=29.04 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=33.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEM-LGLRSETILLPST 72 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577788877666777888888999988 8999999999865
No 103
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=73.47 E-value=13 Score=37.53 Aligned_cols=65 Identities=18% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.+|+++|-.+++| ||...++.+.+..++ .|+++.+-.-...- -.+.++.+++.+||.||+..
T Consensus 163 ~~~i~avtacp~G~aht~mAae~L~~aA~~-~g~~i~vE~~g~~g---------------~~~~lt~~~i~~Ad~Viia~ 226 (631)
T PRK09765 163 APTIVCVTACPAGIAHTYMAAEYLEKAGRK-LGVNVYVEKQGANG---------------IEGRLTADQLNSATACIFAA 226 (631)
T ss_pred cceEEEEEeCCCcchHHHHHHHHHHHHHHH-CCCeEEEEecCCcC---------------CCCCCCHHHHHhCCEEEEee
Confidence 3678888888876 788888999999988 89877643322210 01224568899999999886
Q ss_pred ccc
Q 024934 137 PTR 139 (260)
Q Consensus 137 PtY 139 (260)
-+-
T Consensus 227 d~~ 229 (631)
T PRK09765 227 EVA 229 (631)
T ss_pred cCc
Confidence 543
No 104
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=72.61 E-value=42 Score=32.09 Aligned_cols=48 Identities=10% Similarity=-0.069 Sum_probs=31.7
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCC
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGT 176 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~ 176 (260)
...+.+||++|.|.--.|....+. +.|+-.+. ..+.||++.+++.+-+
T Consensus 112 ~~~l~~aDlvI~gGG~lfqD~y~~-~~~~y~l~-----A~l~gkpv~l~gqsiG 159 (426)
T PRK10017 112 VRLLSGYDAIIQVGGSFFVDLYGV-PQFEHALC-----AFMAKKPLYMIGHSVG 159 (426)
T ss_pred HHHHHhCCEEEECCCCccccCccc-HHHHHHHH-----HHHcCCCEEEECCcCC
Confidence 356899999999998888765443 33332111 1357899877776544
No 105
>PRK11914 diacylglycerol kinase; Reviewed
Probab=72.44 E-value=7.4 Score=35.09 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=31.0
Q ss_pred cCCCCeEEEEEe--cCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 56 EITKLKIFIVFY--SMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 56 ~~~m~KVlIIy~--S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.-.|+|+++||- |..|...+..+.+.+.+++ .|.++.++...
T Consensus 5 ~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~ 48 (306)
T PRK11914 5 RHEIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGT 48 (306)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 346899999884 4456677788888888887 78887766543
No 106
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=71.96 E-value=11 Score=31.07 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc---eEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV---EGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~---ev~li~l~~~ 100 (260)
...||+||..--+. -|+.|.+-..+.|.+ .|+ ++++++++..
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~-~G~~~~~i~v~~VPGA 54 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAA-RGGAASQVDIFDVPGA 54 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 45799999865443 588899999999988 774 5788888765
No 107
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=71.89 E-value=61 Score=27.43 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEEEEEec----CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYS----MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S----~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+||=.- .||-.|..++.+...+.+ .|++++++-..+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~ 44 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSD 44 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccC
Confidence 7888887532 389899999999999988 899999987655
No 108
>PRK09065 glutamine amidotransferase; Provisional
Probab=71.59 E-value=32 Score=29.98 Aligned_cols=75 Identities=5% Similarity=-0.006 Sum_probs=41.5
Q ss_pred CCeEEEEEec-CchhHH----HHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEE
Q 024934 59 KLKIFIVFYS-MYGHVE----GLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFL 133 (260)
Q Consensus 59 m~KVlIIy~S-~~GnT~----~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II 133 (260)
|+|++|+-.. +....+ ...+.+...+.. .|++++++++.+.. . ..++.++|+||
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~-----~p~~~~~dgvv 59 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGL-AEQPVVVVRVFAGE---------------P-----LPAPDDFAGVI 59 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhcc-CCceEEEEeccCCC---------------C-----CCChhhcCEEE
Confidence 6788888533 211111 134555556666 78899999987531 1 22456789886
Q ss_pred EE-ccccC-CCch--HHHHHHHHHh
Q 024934 134 FG-FPTRY-GCMA--AQMKAFFDST 154 (260)
Q Consensus 134 ~G-sPtY~-g~~~--~~mK~flD~~ 154 (260)
+. +|-.. ...+ ..++.|+..+
T Consensus 60 i~Gg~~~~~d~~~w~~~~~~~i~~~ 84 (237)
T PRK09065 60 ITGSWAMVTDRLDWSERTADWLRQA 84 (237)
T ss_pred EeCCCcccCCCchhHHHHHHHHHHH
Confidence 64 55321 1222 2345666653
No 109
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=71.01 E-value=9.3 Score=30.43 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=38.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE-ccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG-FPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G-sPt 138 (260)
+||+|+|......=...+..+++-|++..|++|. +|+-+... ....+....-.+.+.++|.||+. ||.
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~-lD~~~~~~----------i~~~g~~~W~~~~~~~ad~Vliv~S~~ 69 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVI-LDQWELNE----------IARQGPPRWMERQIREADKVLIVCSPG 69 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCcee-ecHHhhcc----------cccCCHHHHHHHHHhcCCEEEEEeccc
Confidence 4899988664332246777888888883388875 34433210 00011111114668999988655 444
Q ss_pred c
Q 024934 139 R 139 (260)
Q Consensus 139 Y 139 (260)
|
T Consensus 70 ~ 70 (150)
T PF08357_consen 70 Y 70 (150)
T ss_pred h
Confidence 4
No 110
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=70.15 E-value=22 Score=30.81 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=26.4
Q ss_pred CCeEEEEEecC---chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSM---YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+||..|- .|.-..=+-.-...|++ .|++++++....
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~-aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDR-AGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 67999988652 34333223344566777 899999998754
No 111
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=68.89 E-value=30 Score=29.61 Aligned_cols=74 Identities=20% Similarity=0.118 Sum_probs=42.8
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC-CcHHHhhcCCCCCCCCCcccccH--hhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET-LTREALDHMKVPPRDDDIPEISA--ADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~-~~~~~~~~~~~~~~~dd~~~i~~--~~l~~AD~II~Gs 136 (260)
|||.||-.|.. +-..|.+++.. .|++|+-|-=... .+.. ...|- ...|+-+.+. ++|...|+||-..
T Consensus 1 mKIaiIgAsG~-----~Gs~i~~EA~~-RGHeVTAivRn~~K~~~~---~~~~i-~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGK-----AGSRILKEALK-RGHEVTAIVRNASKLAAR---QGVTI-LQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCch-----hHHHHHHHHHh-CCCeeEEEEeChHhcccc---cccee-ecccccChhhhHhhhcCCceEEEec
Confidence 79999998853 33455555555 6888865532221 1100 11111 1223333333 7899999999999
Q ss_pred cccCCCc
Q 024934 137 PTRYGCM 143 (260)
Q Consensus 137 PtY~g~~ 143 (260)
-.|+..-
T Consensus 71 ~~~~~~~ 77 (211)
T COG2910 71 GAGASDN 77 (211)
T ss_pred cCCCCCh
Confidence 8886444
No 112
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=67.59 E-value=12 Score=33.50 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=40.6
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFLF 134 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II~ 134 (260)
-+..++|.|+|.+...+.....+.+.+.+++ .|+++..+.+.+. +++... .+.+ .+.|++++
T Consensus 128 ~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~v~~~---------------~~~~~~-~~~l~~~~da~~~ 190 (294)
T PF04392_consen 128 FPDAKRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIPVPSS---------------EDLEQA-LEALAEKVDALYL 190 (294)
T ss_dssp STT--EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEEESSG---------------GGHHHH-HHHHCTT-SEEEE
T ss_pred CCCCCEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEecCcH---------------hHHHHH-HHHhhccCCEEEE
Confidence 3567899999988777777788888888877 7998888888653 122222 3333 46788877
Q ss_pred Eccc
Q 024934 135 GFPT 138 (260)
Q Consensus 135 GsPt 138 (260)
.+..
T Consensus 191 ~~~~ 194 (294)
T PF04392_consen 191 LPDN 194 (294)
T ss_dssp -S-H
T ss_pred ECCc
Confidence 6443
No 113
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.67 E-value=1e+02 Score=27.94 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=34.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.....--+...++...+.+++ .|++++++++.+.
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14169 30 TPTLAVVLVGSDPASEVYVRNKQRRAED-IGVRSLMFRLPEA 70 (282)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577788877777778889999999998 8999999999875
No 114
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=65.00 E-value=24 Score=29.62 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=29.1
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|+||-+. .||+..+++.+. + .|+++++++. .+++.++|+||+..|
T Consensus 1 i~i~d~g-~~~~~~~~~~l~----~-~g~~v~v~~~-------------------------~~~l~~~d~iiipG~ 45 (198)
T cd01748 1 IAIIDYG-MGNLRSVANALE----R-LGAEVIITSD-------------------------PEEILSADKLILPGV 45 (198)
T ss_pred CEEEeCC-CChHHHHHHHHH----H-CCCeEEEEcC-------------------------hHHhccCCEEEECCC
Confidence 3555533 567777776654 3 5778877662 123568999999775
No 115
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=64.94 E-value=1e+02 Score=27.66 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhc
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
|...++..|.+ .|.++.+++..........+. .+.. .++..++ .+.+.++|.||+..|.. ..++..++.+.
T Consensus 11 MG~~mA~~L~~-~g~~v~v~dr~~~~~~~~~~~-g~~~-~~~~~e~-~~~~~~~dvvi~~v~~~-----~~~~~v~~~l~ 81 (301)
T PRK09599 11 MGGNMARRLLR-GGHEVVGYDRNPEAVEALAEE-GATG-ADSLEEL-VAKLPAPRVVWLMVPAG-----EITDATIDELA 81 (301)
T ss_pred HHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHC-CCee-cCCHHHH-HhhcCCCCEEEEEecCC-----cHHHHHHHHHH
Confidence 44555555555 688888887754321111111 1110 0111111 12222369999998862 23444444432
Q ss_pred ccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc
Q 024934 156 MLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT 205 (260)
Q Consensus 156 ~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~ 205 (260)
. .+.... +++..++ +... ....+...+...|..+++.+..
T Consensus 82 ~-----~l~~g~--ivid~st--~~~~-~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 82 P-----LLSPGD--IVIDGGN--SYYK-DDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred h-----hCCCCC--EEEeCCC--CChh-HHHHHHHHHHHcCCEEEeCCCC
Confidence 1 233222 3333322 1222 2355677788889998876554
No 116
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=64.57 E-value=26 Score=29.49 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=31.3
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+|+-|...||...+... ++. .|+++++++..+ ++.++|+|||+...
T Consensus 1 ~~~~~y~~~gN~~~l~~~----~~~-~G~~~~~~~~~~-------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 1 IAVIRYPDISNFTDLDPL----ARE-PGVDVRYVEVPE-------------------------GLGDADLIILPGSK 47 (194)
T ss_pred CEeecCCCccCHHHHHHH----Hhc-CCceEEEEeCCC-------------------------CCCCCCEEEECCCc
Confidence 356666667887655443 444 688898888653 14578999987765
No 117
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=64.25 E-value=13 Score=32.96 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
||||.|+. -.|....+.+++. . .|+++.+++- .++|.++|+|||..
T Consensus 1 ~m~igVLa--~qG~~~e~~~aL~----~-lG~ev~~v~~-------------------------~~~L~~~DgLILPG 46 (248)
T PLN02832 1 MMAIGVLA--LQGSFNEHIAALR----R-LGVEAVEVRK-------------------------PEQLEGVSGLIIPG 46 (248)
T ss_pred CcEEEEEe--CCCchHHHHHHHH----H-CCCcEEEeCC-------------------------HHHhccCCEEEeCC
Confidence 78888887 5566555554443 3 4555544332 35678999999987
No 118
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=64.20 E-value=1.1e+02 Score=27.44 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=53.1
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-h---hcCEEEEEccccCCCchHHHHHHH
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-V---EADGFLFGFPTRYGCMAAQMKAFF 151 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~---~AD~II~GsPtY~g~~~~~mK~fl 151 (260)
|...+++.+.+ .|.++.+++............. ... .+ +.+++ . ++|.||+..|.. ..++..+
T Consensus 11 mG~~mA~~L~~-~g~~v~v~dr~~~~~~~~~~~g-~~~-~~-----s~~~~~~~~~~advVi~~vp~~-----~~~~~v~ 77 (299)
T PRK12490 11 MGGNMAERLRE-DGHEVVGYDVNQEAVDVAGKLG-ITA-RH-----SLEELVSKLEAPRTIWVMVPAG-----EVTESVI 77 (299)
T ss_pred HHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHCC-Cee-cC-----CHHHHHHhCCCCCEEEEEecCc-----hHHHHHH
Confidence 44455555555 6778888776432111111111 100 01 12333 2 369999999865 3556655
Q ss_pred HHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc
Q 024934 152 DSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT 205 (260)
Q Consensus 152 D~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~ 205 (260)
+.+.. .+ .|+ +|+.+++.. . .+...+.+.+..+|..+++.+..
T Consensus 78 ~~i~~-----~l~~g~---ivid~st~~--~-~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 78 KDLYP-----LLSPGD---IVVDGGNSR--Y-KDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred HHHhc-----cCCCCC---EEEECCCCC--c-hhHHHHHHHHHHcCCeEEeCCCC
Confidence 55431 23 233 233332211 1 23456677778888888876544
No 119
>PRK13059 putative lipid kinase; Reviewed
Probab=63.89 E-value=20 Score=32.28 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=30.1
Q ss_pred CCeEEEEE--ecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVF--YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy--~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|+|+++|| .|..|+..+..+.+.+.+++ .|.++.++.....
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~ 43 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLE 43 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCc
Confidence 67888877 34456666777888888988 8888887776543
No 120
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=62.47 E-value=19 Score=31.02 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||+|+||-|- .||.+.+.+++ +. .|.++.+- + +.+++..||.|||--
T Consensus 1 m~~i~IIDyg-~GNL~Sv~~Al----er-~G~~~~vs---~----------------------d~~~i~~AD~liLPG-- 47 (204)
T COG0118 1 MMMVAIIDYG-SGNLRSVKKAL----ER-LGAEVVVS---R----------------------DPEEILKADKLILPG-- 47 (204)
T ss_pred CCEEEEEEcC-cchHHHHHHHH----HH-cCCeeEEe---c----------------------CHHHHhhCCEEEecC--
Confidence 7888888654 47777666554 33 45555442 2 267789999999843
Q ss_pred cCCCchHHHHHHH
Q 024934 139 RYGCMAAQMKAFF 151 (260)
Q Consensus 139 Y~g~~~~~mK~fl 151 (260)
-|.....|+++-
T Consensus 48 -VGaf~~am~~L~ 59 (204)
T COG0118 48 -VGAFGAAMANLR 59 (204)
T ss_pred -CCCHHHHHHHHH
Confidence 345555555433
No 121
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=62.10 E-value=36 Score=29.69 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCccc-ccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPE-ISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~-i~~~~l~~AD~II~GsP 137 (260)
.++|+++-+.. |. +.+.+.|.+ .|++++.+.+++..+.. .+ ... .........|.|+|.||
T Consensus 123 ~~~vl~~~~~~-~r-----~~l~~~L~~-~G~~v~~~~~Y~~~~~~----------~~-~~~~~~~~~~~~~d~v~ftS~ 184 (248)
T COG1587 123 GKRVLILRGNG-GR-----EVLEEKLEE-RGAEVREVEVYRTEPPP----------LD-EATLIELLKLGEVDAVVFTSS 184 (248)
T ss_pred CCeEEEEcCCC-ch-----HHHHHHHHh-CCCEEEEEeeeeecCCC----------cc-HHHHHHHHHhCCCCEEEEeCH
Confidence 56788766443 22 667777887 89999988888764311 11 000 11345679999999986
Q ss_pred ccCCCchHHHHHHHHHhcc
Q 024934 138 TRYGCMAAQMKAFFDSTGM 156 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~ 156 (260)
..+++|++.+..
T Consensus 185 -------~~v~~~~~~~~~ 196 (248)
T COG1587 185 -------SAVRALLALAPE 196 (248)
T ss_pred -------HHHHHHHHHccc
Confidence 467888887753
No 122
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=61.78 E-value=33 Score=29.73 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=42.7
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Ecccc
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFPTR 139 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsPtY 139 (260)
.|.-|| +.|-+..++. .|++ .|.+|++-.+.+. + ..++.+.|.++|+||+ +...
T Consensus 15 ~~~~~~--~~~~~~~~~~----~L~~-~gf~V~~~~~~d~----------------~-~~~~~~~L~~~D~lV~~~~~~- 69 (215)
T cd03142 15 AVAALY--PDGMHGTIAA----ALAE-YGFDVQTATLDEP----------------E-HGLTEEVLAETDVLLWWGHIA- 69 (215)
T ss_pred hhHhhC--cchHHHHHHH----HHHh-cCcEEEEEeccCc----------------c-ccCCHhHHhcCCEEEEeCCCC-
Confidence 455566 6665554444 4555 6888886655442 0 1133567999999998 4443
Q ss_pred CCCch-HHHHHHHHHhc
Q 024934 140 YGCMA-AQMKAFFDSTG 155 (260)
Q Consensus 140 ~g~~~-~~mK~flD~~~ 155 (260)
...++ .+.++|.+.+.
T Consensus 70 ~~~l~~eq~~~l~~~V~ 86 (215)
T cd03142 70 HDEVKDEIVERVHRRVL 86 (215)
T ss_pred cCcCCHHHHHHHHHHHH
Confidence 34444 47788888764
No 123
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.73 E-value=88 Score=28.36 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 73 (285)
T PRK10792 33 APGLAVVLVGSDPASQVYVASKRKACEE-VGFVSRSYDLPET 73 (285)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 3577788777666778889999999998 8999999999865
No 124
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=61.70 E-value=18 Score=29.74 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCC---ceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDG---VEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G---~ev~li~l~~~ 100 (260)
.+.||+||...-+- -|+.|.+...+.+.+ .| .+++++.++..
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~-~gv~~~~i~v~~VPGa 56 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKR-HGVSEENIDVVRVPGA 56 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCCH
Confidence 46799999977654 478899888889987 67 46788888764
No 125
>PRK04155 chaperone protein HchA; Provisional
Probab=61.54 E-value=95 Score=28.10 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=25.5
Q ss_pred CeEEEEEecC------------chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSM------------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~------------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+|||||..|. +|+-..=+-.-...|++ .|++|++..+..
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~-AG~eVdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHK-AGFEFDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 3999998763 23322222333566777 899999999854
No 126
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.76 E-value=1.3e+02 Score=27.19 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=33.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|......-+...++...+.+++ .|++++++++.+.
T Consensus 26 ~P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 66 (279)
T PRK14178 26 YPRLATVIVGDDPASQMYVRMKHRACER-VGIGSVGIELPGD 66 (279)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577788877666677888888899988 8999999999875
No 127
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.69 E-value=1.3e+02 Score=27.35 Aligned_cols=42 Identities=5% Similarity=-0.086 Sum_probs=34.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|.....-.+...++...+.+++ .|++++++++.+..
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 74 (297)
T PRK14168 33 VPGLVTILVGESPASLSYVTLKIKTAHR-LGFHEIQDNQSVDI 74 (297)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4577788877777778889999999998 89999999998753
No 128
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=60.28 E-value=27 Score=27.01 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=44.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD~II~G 135 (260)
..+.+||.......+..-++...+.+++ .|++++++.+.+..... ++-.. .+++ .+-+||++-
T Consensus 29 ~P~Laii~vg~d~~S~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~------------el~~~-i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 29 TPKLAIILVGDDPASISYVRSKQKAAEK-LGIEFELIELPEDISEE------------ELLEL-IEKLNEDPSVHGILVQ 94 (117)
T ss_dssp --EEEEEEES--HHHHHHHHHHHHHHHH-HT-EEEEEEE-TTSSHH------------HHHHH-HHHHHH-TT-SEEEEE
T ss_pred CcEEEEEecCCChhHHHHHHHHHHHHHH-cCCceEEEECCCCcCHH------------HHHHH-HHHHhCCCCCCEEEEc
Confidence 4577888877777778888999999988 89999999997642211 00011 2233 356999999
Q ss_pred ccccCCCc
Q 024934 136 FPTRYGCM 143 (260)
Q Consensus 136 sPtY~g~~ 143 (260)
.|....--
T Consensus 95 ~PLP~~i~ 102 (117)
T PF00763_consen 95 LPLPKHID 102 (117)
T ss_dssp SSSSTTSH
T ss_pred CCCCCCcc
Confidence 99965443
No 129
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=60.23 E-value=36 Score=30.27 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=29.9
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+++|+|++++.. ...-.-++.+.+.|++ .|+++++++..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~ 46 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGE 46 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCc
Confidence 458999997753 3333456888888988 899999998764
No 130
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=59.66 E-value=19 Score=32.99 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.+||+.||..|..| ..+|+.|++.+.. ++|...... .+.+.+...+.+.+||+|||...
T Consensus 2 ~~m~iaii~~t~~G--~~la~~l~~~l~~------~~~~~~~~~-------------~~~~~~~~~~~f~~~d~iIfI~A 60 (315)
T PRK05788 2 STMKIAIICATERG--RDLAERLKAKLKA------DCYTSEKLE-------------YEGFADAFEEAFGCYDALIFIMA 60 (315)
T ss_pred CcceEEEEEECccH--HHHHHHHHHhccc------ceecchhhc-------------cCCHHHHHHHHHhcCCeEEEEEC
Confidence 36899999998887 6789999998865 233222110 01233332456789999998765
Q ss_pred c
Q 024934 138 T 138 (260)
Q Consensus 138 t 138 (260)
+
T Consensus 61 ~ 61 (315)
T PRK05788 61 T 61 (315)
T ss_pred h
Confidence 4
No 131
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=59.57 E-value=22 Score=28.73 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCeEEEEEecCc-hhHHHHHHHHHHHccCCCCc---eEEEEEcCCC
Q 024934 59 KLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGV---EGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~---ev~li~l~~~ 100 (260)
..||+||...-+ -.|+.|.+...+.+.+ .|+ +++++.++..
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~-~g~~~~~i~~~~VPGa 47 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKR-HGVAEENIEVIRVPGA 47 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHH-TTTTGGCEEEEEESSG
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCCH
Confidence 468999987765 4688999999999988 787 8999999875
No 132
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=59.39 E-value=26 Score=31.56 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcC-CCCCCCCCc-ccccHhhhhhcCEEEEEccccC
Q 024934 75 GLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM-KVPPRDDDI-PEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 75 ~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~-~~~~~~dd~-~~i~~~~l~~AD~II~GsPtY~ 140 (260)
.|...++..+++ .|..+.++....... .+.... .+-. |+. .....+.+.++|.||+.+|+..
T Consensus 13 liG~s~a~~l~~-~g~~v~i~g~d~~~~-~~~~a~~lgv~--d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 13 LMGGSLARALKE-AGLVVRIIGRDRSAA-TLKAALELGVI--DELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred hHHHHHHHHHHH-cCCeEEEEeecCcHH-HHHHHhhcCcc--cccccchhhhhcccCCEEEEeccHHH
Confidence 377788888888 899998888765321 111111 1111 111 0111456678999999999863
No 133
>PRK13337 putative lipid kinase; Reviewed
Probab=59.38 E-value=30 Score=31.10 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=28.0
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+|+++||--..| ...+....+.+.+++ .|.+++++....
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~ 42 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTG 42 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecC
Confidence 6788888844434 445566677778888 888888776653
No 134
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=59.25 E-value=10 Score=31.56 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..+-++++|++ +|.|. +|.+|...+-. .|..|..++..++.- . +.. . ..+...... .+.+..+|.+||==
T Consensus 46 ~~~~l~l~G~~G~GKTh-La~ai~~~~~~-~g~~v~f~~~~~L~~-~-l~~--~-~~~~~~~~~-~~~l~~~dlLilDD 116 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTH-LAVAIANEAIR-KGYSVLFITASDLLD-E-LKQ--S-RSDGSYEEL-LKRLKRVDLLILDD 116 (178)
T ss_dssp C--EEEEEESTTSSHHH-HHHHHHHHHHH-TT--EEEEEHHHHHH-H-HHC--C-HCCTTHCHH-HHHHHTSSCEEEET
T ss_pred cCeEEEEEhhHhHHHHH-HHHHHHHHhcc-CCcceeEeecCceec-c-ccc--c-ccccchhhh-cCccccccEecccc
Confidence 45668888886 79988 45555555544 688998888866411 1 111 1 111223333 67888999999854
No 135
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=59.02 E-value=21 Score=28.80 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=30.3
Q ss_pred CeEEEEEecCc-hhHHHHHHHHHHHccCCCCce---EEEEEcCCC
Q 024934 60 LKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVE---GLLYRVPET 100 (260)
Q Consensus 60 ~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~e---v~li~l~~~ 100 (260)
.||+||...-+ --|+.|.+...+.+++ .|++ +++++++..
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~-~g~~~~~i~v~~VPGa 44 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKR-LGAEVDNIDVIWVPGA 44 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 47889887754 3578888888888887 7765 567888764
No 136
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=58.86 E-value=45 Score=30.66 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=50.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
..++||. +|.+...+...++.|++ .|++++++++....|- |...+ .+.+.+++.||+.-=-+
T Consensus 202 ~di~iva---~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pl-------------d~~~i-~~~~~~~~~vv~vEe~~ 263 (327)
T PRK09212 202 SDVTIVT---FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPL-------------DTETI-IESVKKTNRLVVVEEGW 263 (327)
T ss_pred CCEEEEE---ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCC-------------CHHHH-HHHHHhCCeEEEEcCCC
Confidence 4566554 45555566666666766 7999999999876541 11122 45567888777655444
Q ss_pred -CCCchHHHHHHHHHh
Q 024934 140 -YGCMAAQMKAFFDST 154 (260)
Q Consensus 140 -~g~~~~~mK~flD~~ 154 (260)
.|++.+++-.++-..
T Consensus 264 ~~gGlg~~la~~l~~~ 279 (327)
T PRK09212 264 PFAGVGAEIAALIMKE 279 (327)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 477888888888753
No 137
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=58.77 E-value=56 Score=28.00 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=32.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Ecc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFP 137 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsP 137 (260)
|+|+++.... .-|..+.+. +++ .|+++++++.... ..++. .+.+.++|+||| |.|
T Consensus 1 ~~ilv~d~~~-~~~~~~~~~----l~~-~G~~~~~~~~~~~----------------~~~~~-~~~~~~~dgliisGGp 56 (214)
T PRK07765 1 MRILVVDNYD-SFVFNLVQY----LGQ-LGVEAEVWRNDDP----------------RLADE-AAVAAQFDGVLLSPGP 56 (214)
T ss_pred CeEEEEECCC-cHHHHHHHH----HHH-cCCcEEEEECCCc----------------CHHHH-HHhhcCCCEEEECCCC
Confidence 5788887654 333444444 444 5788888877531 11111 233568999988 455
No 138
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=58.43 E-value=50 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=29.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|||+||-+-.......+++++. + .|++++++...+ ..+.++|+|||....
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~----~-~G~~~~~i~~~~------------------------~~l~~~d~lilpGG~ 50 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALR----L-LGVDAEIVWYED------------------------GSLPDYDGVVLPGGF 50 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHH----H-CCCeEEEEecCC------------------------CCCCCCCEEEECCCC
Confidence 5788877543222334555444 4 578887775432 114578999887643
No 139
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=58.19 E-value=26 Score=28.58 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=28.2
Q ss_pred CCeEEEEEecC-----------chhH--HHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSM-----------YGHV--EGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~-----------~GnT--~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+|||||.+-. ||++ +.+-+.+.+...+ .|++++.+.-.
T Consensus 1 ~~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN 52 (146)
T PRK05395 1 MMKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAE-LGVELEFFQSN 52 (146)
T ss_pred CCEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeC
Confidence 68899998752 5643 4566777777777 78999888754
No 140
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.90 E-value=1.5e+02 Score=27.00 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|.......+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (293)
T PRK14185 31 RPHLAAILVGHDGGSETYVANKVKACEE-CGFKSSLIRYESDV 72 (293)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4577788877777778888999999998 89999999998753
No 141
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.25 E-value=9.9 Score=34.14 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=33.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|||+++.++..|-.+.++..+++.|.+ .|.+|.++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~-~G~~v~v~~~~ 38 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALAR-RGHEVHFITSS 38 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHh-cCCceEEEecC
Confidence 689999888788888899999999998 89999988654
No 142
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=57.03 E-value=29 Score=32.00 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=53.8
Q ss_pred ccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEE
Q 024934 55 REITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFL 133 (260)
Q Consensus 55 ~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II 133 (260)
..++-++|-++|.|..-|...+++.+.+.++. .|+++...-+.... +++.. ...+ ...|.|.
T Consensus 155 ~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v~~~n---------------di~~a-~~~l~g~~d~i~ 217 (322)
T COG2984 155 LLPNAKSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAVTSVN---------------DIPRA-VQALLGKVDVIY 217 (322)
T ss_pred hCCCCeeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEecCccc---------------ccHHH-HHHhcCCCcEEE
Confidence 35567788788877777999999999999999 99999888886541 33333 2333 5667665
Q ss_pred EEccccCCCchHHHHHHHHH
Q 024934 134 FGFPTRYGCMAAQMKAFFDS 153 (260)
Q Consensus 134 ~GsPtY~g~~~~~mK~flD~ 153 (260)
.|+++-..+ .+..++..
T Consensus 218 --~p~dn~i~s-~~~~l~~~ 234 (322)
T COG2984 218 --IPTDNLIVS-AIESLLQV 234 (322)
T ss_pred --EecchHHHH-HHHHHHHH
Confidence 477775554 33444443
No 143
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.96 E-value=1.5e+02 Score=26.82 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|......-+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (284)
T PRK14170 31 KPGLAVVLVGDNQASRTYVRNKQKRTEE-AGMKSVLIELPENV 72 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4578888877777788889999999998 89999999998753
No 144
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=56.89 E-value=36 Score=29.70 Aligned_cols=30 Identities=7% Similarity=-0.136 Sum_probs=19.0
Q ss_pred hhhhcCEEEEEc---cccCCCchHHHHHHHHHh
Q 024934 125 DLVEADGFLFGF---PTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 125 ~l~~AD~II~Gs---PtY~g~~~~~mK~flD~~ 154 (260)
+..+||+|+|-. |.+...-...++.++.+.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f 123 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQI 123 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHH
Confidence 467999998854 344444455666666654
No 145
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=56.76 E-value=32 Score=31.22 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCCeEEEEEe--cCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFY--SMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~--S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.|+|+.+||- |..|+-.+..+.+.+.+++ .|.+++.+.....
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~ 44 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEA 44 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecC
Confidence 3788888883 3456778899999999998 8998888777654
No 146
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=56.01 E-value=17 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=29.4
Q ss_pred CCCeEEEEEecCc-hhHHHHHHHHHHHccCCCCce-EEEEEcC
Q 024934 58 TKLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVE-GLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~e-v~li~l~ 98 (260)
.+|||||++.|.. || ...|+++++.|++ .|.+ +.+.+..
T Consensus 3 ~~~rili~t~~~G~GH-~~~a~al~~~l~~-~g~~~~~~~d~~ 43 (380)
T PRK13609 3 KNPKVLILTAHYGNGH-VQVAKTLEQTFRQ-KGIKDVIVCDLF 43 (380)
T ss_pred CCCeEEEEEcCCCchH-HHHHHHHHHHHHh-cCCCcEEEEEhH
Confidence 4789999998864 55 5588999999988 7775 4555654
No 147
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=55.68 E-value=1.1e+02 Score=24.93 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=20.8
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.||.||.+|..- ...++.+.+.|++ .|+..++.-+.
T Consensus 1 p~V~Ii~gs~SD--~~~~~~a~~~L~~-~gi~~~~~V~s 36 (150)
T PF00731_consen 1 PKVAIIMGSTSD--LPIAEEAAKTLEE-FGIPYEVRVAS 36 (150)
T ss_dssp -EEEEEESSGGG--HHHHHHHHHHHHH-TT-EEEEEE--
T ss_pred CeEEEEeCCHHH--HHHHHHHHHHHHH-cCCCEEEEEEe
Confidence 379999999631 2355666666666 67767654443
No 148
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.32 E-value=1.7e+02 Score=26.55 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=33.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|......-+...++...+.+++ .|++++++++.+.
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 71 (286)
T PRK14184 31 APGLAVILVGEDPASQVYVRNKERACED-AGIVSEAFRLPAD 71 (286)
T ss_pred CCEEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577788777666777888888999988 8999999999865
No 149
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=54.04 E-value=26 Score=30.78 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=37.5
Q ss_pred CCeEEEEE-ecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVF-YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy-~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.+||++|= .|..+.-+...+.+.+.+++ .|++++.++..+ +. .+.|.+||+|+++--
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~-lG~~v~~l~~~~--------------------d~-~~~l~~ad~I~v~GG 88 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAP-LGIEVTGIHRVA--------------------DP-VAAIENAEAIFVGGG 88 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEeccch--------------------hh-HHHHhcCCEEEECCc
Confidence 56776554 45444444455677788877 788877776543 12 577899999988743
No 150
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.84 E-value=19 Score=31.93 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=31.7
Q ss_pred CeEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|||+++..+.. |..+..+..+++++.+ .|+++.++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~ 40 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEK 40 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeec
Confidence 68999987763 6677788888899988 899998888654
No 151
>PRK05637 anthranilate synthase component II; Provisional
Probab=53.68 E-value=41 Score=28.76 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=23.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
|.||++|-+ ..|+|..+++.+.+ .|+++++++-
T Consensus 1 ~~~il~iD~-~dsf~~nl~~~l~~-----~g~~~~v~~~ 33 (208)
T PRK05637 1 MTHVVLIDN-HDSFVYNLVDAFAV-----AGYKCTVFRN 33 (208)
T ss_pred CCEEEEEEC-CcCHHHHHHHHHHH-----CCCcEEEEeC
Confidence 678888763 35788887777553 4677887765
No 152
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=53.47 E-value=40 Score=23.60 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=29.2
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+|-+ +++.=.+...+.+.+.+.+.+ .|++++++++.+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~-~~i~~ei~~~~~ 38 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEE-LGIEVEIIDIED 38 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHH-TTEEEEEEETTT
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHh-cCCeEEEEEccC
Confidence 46777 666567777888888888877 689999999843
No 153
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.59 E-value=1.3e+02 Score=27.11 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=35.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.|||.|| ++ |+ |...++..+.. .|.+|.+++-... + .+ .+.+.++|.||+..|.
T Consensus 4 ~m~I~ii-G~--G~---~G~~lA~~l~~-~G~~V~~~~r~~~---------------~---~~-~~~~~~advvi~~vp~ 57 (308)
T PRK14619 4 PKTIAIL-GA--GA---WGSTLAGLASA-NGHRVRVWSRRSG---------------L---SL-AAVLADADVIVSAVSM 57 (308)
T ss_pred CCEEEEE-Cc--cH---HHHHHHHHHHH-CCCEEEEEeCCCC---------------C---CH-HHHHhcCCEEEEECCh
Confidence 4677776 33 33 55556666665 6888988876542 1 12 3456799999999995
No 154
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=52.35 E-value=32 Score=32.15 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=38.1
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.+.++||.||-+.. .|...++..+.. .|.++.+++..+. ... .+.+.+||.||+.
T Consensus 95 ~~~~~~I~IiGG~G-----lmG~slA~~l~~-~G~~V~~~d~~~~------------------~~~-~~~~~~aDlVila 149 (374)
T PRK11199 95 NPDLRPVVIVGGKG-----QLGRLFAKMLTL-SGYQVRILEQDDW------------------DRA-EDILADAGMVIVS 149 (374)
T ss_pred CcccceEEEEcCCC-----hhhHHHHHHHHH-CCCeEEEeCCCcc------------------hhH-HHHHhcCCEEEEe
Confidence 34578888875332 134445555555 6788888886431 111 3446799999999
Q ss_pred ccccC
Q 024934 136 FPTRY 140 (260)
Q Consensus 136 sPtY~ 140 (260)
.|+..
T Consensus 150 vP~~~ 154 (374)
T PRK11199 150 VPIHL 154 (374)
T ss_pred CcHHH
Confidence 99874
No 155
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=51.79 E-value=64 Score=29.67 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=48.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
-..++||. +|++-..|..+++.|++ .|++++++++....|- |...+ .+.+.+...||+.=--
T Consensus 201 G~ditiia---~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPl-------------D~~~i-~~~~~~t~~vv~vEE~ 262 (327)
T CHL00144 201 GNDITILT---YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPL-------------DLGTI-SKSVKKTHKVLIVEEC 262 (327)
T ss_pred CCCEEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCC-------------CHHHH-HHHHHhhCcEEEEECC
Confidence 34666665 56666667777777777 8999999999876541 11122 3445566666554443
Q ss_pred c-CCCchHHHHHHHHH
Q 024934 139 R-YGCMAAQMKAFFDS 153 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~ 153 (260)
| .|++.+.+-.++-.
T Consensus 263 ~~~gGlG~~va~~l~e 278 (327)
T CHL00144 263 MKTGGIGAELIAQINE 278 (327)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3 57777777766654
No 156
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=51.54 E-value=30 Score=29.00 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
||||.|+.-. ||-..+.++ ++. .|+++..++. .+++.++|+|||...
T Consensus 1 ~m~~~i~~~~--g~~~~~~~~----l~~-~g~~~~~~~~-------------------------~~~l~~~dgiii~GG 47 (189)
T PRK13525 1 MMKIGVLALQ--GAVREHLAA----LEA-LGAEAVEVRR-------------------------PEDLDEIDGLILPGG 47 (189)
T ss_pred CCEEEEEEcc--cCHHHHHHH----HHH-CCCEEEEeCC-------------------------hhHhccCCEEEECCC
Confidence 6889888744 444444444 333 5666666542 234678999988764
No 157
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=51.42 E-value=2.2e+02 Score=27.09 Aligned_cols=89 Identities=19% Similarity=0.126 Sum_probs=48.9
Q ss_pred CeEEEEEecCc-------hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh--hhcC
Q 024934 60 LKIFIVFYSMY-------GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL--VEAD 130 (260)
Q Consensus 60 ~KVlIIy~S~~-------GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l--~~AD 130 (260)
+||-+|.+|.. ...++.++.+.+.|++ .++++.........+ +++..+ .+++ .++|
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~vv~~~~~~~~~-------------~~~~~~-~~~~~~~~~d 65 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNE-LPVEVVDKPEVTGTP-------------DEARKA-AEEFNEANCD 65 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhc-CCceEEecCcccCCH-------------HHHHHH-HHHHhhcCCc
Confidence 36667776653 2456778888888877 566554433221011 111111 2222 2689
Q ss_pred EEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeC
Q 024934 131 GFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTG 175 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G 175 (260)
+||+..++|..+ +.++..+. . .++|+.++....
T Consensus 66 ~ii~~~~tf~~~-----~~~~~~~~------~-~~~Pvll~a~~~ 98 (452)
T cd00578 66 GLIVWMHTFGPA-----KMWIAGLS------E-LRKPVLLLATQF 98 (452)
T ss_pred EEEEcccccccH-----HHHHHHHH------h-cCCCEEEEeCCC
Confidence 999998888755 22222221 2 268887777653
No 158
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=51.15 E-value=1e+02 Score=27.52 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=31.6
Q ss_pred CCeEEEEEecC---chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSM---YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
++||+|+++-. +--+.+-++.+.+.|++ .|.++.++++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~ 44 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDAS 44 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 77999999754 33456788999999998 89999888765
No 159
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=50.64 E-value=1.7e+02 Score=26.26 Aligned_cols=109 Identities=11% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhc
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
|...++..+.+ .|.++.+++..........+.. ... .++..++ .+.+..+|.|++..|.. .+...++.+.
T Consensus 11 mG~~la~~L~~-~g~~V~~~dr~~~~~~~l~~~g-~~~-~~s~~~~-~~~~~~~dvIi~~vp~~------~~~~v~~~l~ 80 (298)
T TIGR00872 11 MGANIVRRLAK-RGHDCVGYDHDQDAVKAMKEDR-TTG-VANLREL-SQRLSAPRVVWVMVPHG------IVDAVLEELA 80 (298)
T ss_pred HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcC-Ccc-cCCHHHH-HhhcCCCCEEEEEcCch------HHHHHHHHHH
Confidence 55555666656 6888888876532211111111 110 1122222 23445689999999873 4555555543
Q ss_pred ccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc
Q 024934 156 MLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT 205 (260)
Q Consensus 156 ~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~ 205 (260)
. .+ .|+. ++..++.. .. ....+...+...|..+++.+..
T Consensus 81 ~-----~l~~g~i---vid~st~~--~~-~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 81 P-----TLEKGDI---VIDGGNSY--YK-DSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred h-----hCCCCCE---EEECCCCC--cc-cHHHHHHHHHhcCCeEEecCCC
Confidence 2 23 3443 33333211 11 2244556677788888876543
No 160
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=50.23 E-value=50 Score=29.32 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=28.8
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+|++||+-.. .+...+..+.+.+.+.+ .|++++++....
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~ 42 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWE 42 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecC
Confidence 67888888443 34556777788888887 788888776544
No 161
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=50.03 E-value=52 Score=32.57 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=35.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.+.+|+||-|. .||...+++++.+ .|+++.+++. .+++.++|+|||.-+
T Consensus 5 ~~~~i~iiDyG-~GN~~sl~~al~~-----~G~~v~~v~~-------------------------~~~l~~~D~lIlpG~ 53 (538)
T PLN02617 5 ADSEVTLLDYG-AGNVRSVRNAIRH-----LGFTIKDVQT-------------------------PEDILNADRLIFPGV 53 (538)
T ss_pred CCCeEEEEECC-CCCHHHHHHHHHH-----CCCeEEEECC-------------------------hhhhccCCEEEECCC
Confidence 47889988876 5788888777664 4666655431 235679999999763
Q ss_pred c
Q 024934 138 T 138 (260)
Q Consensus 138 t 138 (260)
-
T Consensus 54 g 54 (538)
T PLN02617 54 G 54 (538)
T ss_pred C
Confidence 3
No 162
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=49.86 E-value=23 Score=32.07 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
||||+|+-....|++. .+-.+++.+.+ .|.++.++-...
T Consensus 1 ~~~i~i~~~g~gG~~~-~~~~la~~L~~-~g~ev~vv~~~~ 39 (357)
T PRK00726 1 MKKILLAGGGTGGHVF-PALALAEELKK-RGWEVLYLGTAR 39 (357)
T ss_pred CcEEEEEcCcchHhhh-HHHHHHHHHHh-CCCEEEEEECCC
Confidence 7898888765568877 66667777777 789998886543
No 163
>PRK13055 putative lipid kinase; Reviewed
Probab=49.73 E-value=48 Score=30.35 Aligned_cols=39 Identities=5% Similarity=0.104 Sum_probs=28.7
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+|+++|+-.. .|...+..+.+.+.+++ .|++++++...
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~ 42 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTT 42 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 67898888443 44556777888888888 88888877654
No 164
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=49.31 E-value=38 Score=29.53 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=44.2
Q ss_pred CCeEE-EEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIF-IVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVl-IIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++|+ |=+.|.........+...+.+++ .|+++.-+++... +..++ ...|.++|.|.+|--
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~-lg~~v~~L~l~~~----------------~~~~I-e~~l~~~d~IyVgGG 93 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAK-LGLEVSELHLSKP----------------PLAAI-ENKLMKADIIYVGGG 93 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHH-cCCeeeeeeccCC----------------CHHHH-HHhhhhccEEEECCc
Confidence 34665 55677766667788888999988 8999988888763 22334 456788999998853
No 165
>PRK08939 primosomal protein DnaI; Reviewed
Probab=48.15 E-value=13 Score=33.93 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=42.8
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
..+-+++||+. .|-|. |+.+|+..+.. .|..+.++.+.+....-.... .+..+... .+.+.++|.+||=
T Consensus 155 ~~~gl~L~G~~G~GKTh-La~Aia~~l~~-~g~~v~~~~~~~l~~~lk~~~-----~~~~~~~~-l~~l~~~dlLiID 224 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSY-LLAAIANELAK-KGVSSTLLHFPEFIRELKNSI-----SDGSVKEK-IDAVKEAPVLMLD 224 (306)
T ss_pred CCCeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCEEEEEHHHHHHHHHHHH-----hcCcHHHH-HHHhcCCCEEEEe
Confidence 45678899886 79888 55566666666 788998888865321111000 01122333 5678899999853
No 166
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=48.01 E-value=30 Score=28.59 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Eccc
Q 024934 88 DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFPT 138 (260)
Q Consensus 88 ~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsPt 138 (260)
.|+++++++..... +. ..++.++|+||+ |.|-
T Consensus 21 ~G~~~~~~~~~~~~------------------~~-~~~~~~~dgvil~gG~~ 53 (184)
T cd01743 21 LGAEVVVVRNDEIT------------------LE-ELELLNPDAIVISPGPG 53 (184)
T ss_pred cCCceEEEeCCCCC------------------HH-HHhhcCCCEEEECCCCC
Confidence 58889998886421 11 235678999777 6663
No 167
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=47.98 E-value=1e+02 Score=26.52 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.1
Q ss_pred CeEEEEEecCchhH-HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 60 LKIFIVFYSMYGHV-EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 60 ~KVlIIy~S~~GnT-~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|||+||.+-. .|+ ..+.+++.+ . .|+++..+...+ .++.++|+|||..-
T Consensus 1 ~~v~Vl~~~G-~n~~~d~~~a~~~---~-~G~~~~~v~~~~------------------------~~l~~~D~lvipGG 50 (219)
T PRK03619 1 MKVAVIVFPG-SNCDRDMARALRD---L-LGAEPEYVWHKE------------------------TDLDGVDAVVLPGG 50 (219)
T ss_pred CEEEEEecCC-cChHHHHHHHHHh---c-CCCeEEEEecCc------------------------CCCCCCCEEEECCC
Confidence 4788887654 333 335555443 3 577776664422 23568899888753
No 168
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=47.79 E-value=38 Score=25.98 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=57.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+||||+. .|- +|-.+.+.+++ .|+++..++-.+. -.......||-+++-.|.-
T Consensus 3 kkvLIan---rGe---ia~r~~ra~r~-~Gi~tv~v~s~~d--------------------~~s~~~~~ad~~~~~~~~~ 55 (110)
T PF00289_consen 3 KKVLIAN---RGE---IAVRIIRALRE-LGIETVAVNSNPD--------------------TVSTHVDMADEAYFEPPGP 55 (110)
T ss_dssp SEEEESS----HH---HHHHHHHHHHH-TTSEEEEEEEGGG--------------------TTGHHHHHSSEEEEEESSS
T ss_pred CEEEEEC---CCH---HHHHHHHHHHH-hCCcceeccCchh--------------------cccccccccccceecCcch
Confidence 5777765 232 37777888888 8998888775431 1134667888887766443
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
...-.-.+...++-... . ++..+.++++.-.+. ..|.+.+...|+.++|.
T Consensus 56 ~~~~yl~~e~I~~ia~~-------~----g~~~i~pGyg~lse~--~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 56 SPESYLNIEAIIDIARK-------E----GADAIHPGYGFLSEN--AEFAEACEDAGIIFIGP 105 (110)
T ss_dssp GGGTTTSHHHHHHHHHH-------T----TESEEESTSSTTTTH--HHHHHHHHHTT-EESSS
T ss_pred hhhhhccHHHHhhHhhh-------h----cCcccccccchhHHH--HHHHHHHHHCCCEEECc
Confidence 32222223344443321 1 233444443333332 46677777889998874
No 169
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=47.63 E-value=27 Score=28.98 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=42.2
Q ss_pred CeEEEEEec--CchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 60 LKIFIVFYS--MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 60 ~KVlIIy~S--~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
+||++|..= ..+.....++.+... . ..|+++.++...+.... .+.+... .++|..||.| |+|=
T Consensus 1 ~r~V~vtld~~~~~al~~aa~~l~~~-~-~p~l~l~~~~~~el~~~-----------~~~~~~~-~~aia~ADii-~~sm 65 (164)
T PF11965_consen 1 MRFVIVTLDEHYNSALYRAAARLNRD-H-CPGLELSVFAAAELERD-----------PEALEEC-EAAIARADII-FGSM 65 (164)
T ss_pred CEEEEEeCchhhhHHHHHHHHHHhhc-c-CCCeEEEEEeHHHhhcC-----------hHHHHHH-HHHHHhCCEE-Eeeh
Confidence 466666522 234455555555554 2 26899999998875111 0122333 5788999965 5555
Q ss_pred ccCCCchHHHHHHHH
Q 024934 138 TRYGCMAAQMKAFFD 152 (260)
Q Consensus 138 tY~g~~~~~mK~flD 152 (260)
.+....-..+..-++
T Consensus 66 lF~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 66 LFIEDHVRPLLPALE 80 (164)
T ss_pred hhhHHHHHHHHHHHH
Confidence 554443333333333
No 170
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=47.59 E-value=1.2e+02 Score=23.83 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=30.3
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||....-...-...++.|++.+.. ...++|+.++++=
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~nK 113 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVANK 113 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEC
Confidence 457899999998876554444456677776632 2346787777664
No 171
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=47.54 E-value=60 Score=26.94 Aligned_cols=101 Identities=8% Similarity=-0.110 Sum_probs=48.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC-CCCCcccccHhhh--hhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP-RDDDIPEISAADL--VEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~-~~dd~~~i~~~~l--~~AD~II~G 135 (260)
.+||+|+.+... ...=+-...+.+++ .|.++++..+......+... .+.. ...+ ...+++ .++|.|++.
T Consensus 2 ~~~~~il~~~g~--~~~e~~~p~~~l~~-ag~~v~~~s~~~~~~~~v~s--s~G~~v~~d---~~l~~~~~~~~D~l~ip 73 (196)
T PRK11574 2 SASALVCLAPGS--EETEAVTTIDLLVR-GGIKVTTASVASDGNLEITC--SRGVKLLAD---APLVEVADGDFDVIVLP 73 (196)
T ss_pred CceEEEEeCCCc--chhhHhHHHHHHHH-CCCeEEEEEccCCCCceEEc--CCCCEEeCC---CCHHHCCCCCCCEEEEC
Confidence 478888885433 33223334455555 57888887764311000000 0000 0011 112333 478998875
Q ss_pred ccc---cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 136 FPT---RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 136 sPt---Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
... ....-...+..|+.+.. -+||+++.++++
T Consensus 74 GG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 108 (196)
T PRK11574 74 GGIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICAA 108 (196)
T ss_pred CCCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECHh
Confidence 421 11122345677776652 367887665543
No 172
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=47.02 E-value=35 Score=29.34 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+.+.++|.++..++-.++..+.+.+++ .+++.+..-+... |......+-+..+|.+|+-+-
T Consensus 127 ~~k~vi~L~d~~vs~SGel~~~i~~~mK~-~~I~g~~~lvk~~----------------D~eLk~~e~VaTsD~~IIdsv 189 (211)
T COG2454 127 EPKSVIFLFDAPVSKSGELAGRIEEKMKS-LGIPGEASLVKNA----------------DFELKELEVVATSDSGIIDSV 189 (211)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHh-cCCCceeEeccCc----------------CHHHHhcCceeecCeeeeeeh
Confidence 56778888888888888999999999988 8888777666543 111111345678999999996
Q ss_pred ccCCCchHHHH
Q 024934 138 TRYGCMAAQMK 148 (260)
Q Consensus 138 tY~g~~~~~mK 148 (260)
.|+-.++..+-
T Consensus 190 ~~vVdi~~~i~ 200 (211)
T COG2454 190 KRVVDIPAEIM 200 (211)
T ss_pred hHHHhhHHHHH
Confidence 66666655443
No 173
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=46.74 E-value=2.6e+02 Score=26.38 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.+||.....-.+...++...+.+++ .|++++++++.+..
T Consensus 103 ~P~LaiIlvG~dpaS~~Yv~~k~K~~e~-~GI~~~~~~lpe~~ 144 (364)
T PLN02616 103 VPGLAVILVGDRKDSATYVRNKKKACDS-VGINSFEVRLPEDS 144 (364)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3467777766666677788888888888 89999999988753
No 174
>PRK11538 ribosome-associated protein; Provisional
Probab=46.73 E-value=59 Score=24.82 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHH
Q 024934 73 VEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 73 T~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
++.+++.+.+.+.+..+-++.++++.+.. .-+|.+||+|-.= ..++++..+
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~~-------------------------~~~Dy~VIatg~S----~rh~~aia~ 53 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGKS-------------------------SITDCMIICTGTS----SRHVMSIAD 53 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCC-------------------------cccCEEEEEEeCC----HHHHHHHHH
Confidence 46788889999987678899999998631 2568999998654 445555555
Q ss_pred Hh
Q 024934 153 ST 154 (260)
Q Consensus 153 ~~ 154 (260)
.+
T Consensus 54 ~v 55 (105)
T PRK11538 54 HV 55 (105)
T ss_pred HH
Confidence 44
No 175
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=46.61 E-value=99 Score=28.83 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
-.+|+||. +|++-..|..+++.|++ .|++++++++....|- |...+ .+.+.+++.||+.-=-
T Consensus 228 G~dvtIia---~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPl-------------D~~~l-~~~~~~t~~vvtvEE~ 289 (356)
T PLN02683 228 GKDVTIVA---FSKMVGYALKAAEILAK-EGISAEVINLRSIRPL-------------DRDTI-NASVRKTNRLVTVEEG 289 (356)
T ss_pred CCCEEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcc-------------CHHHH-HHHHhhcCeEEEEeCC
Confidence 34677776 56666677777777777 8999999999876441 11112 3445566666554433
Q ss_pred c-CCCchHHHHHHHHH
Q 024934 139 R-YGCMAAQMKAFFDS 153 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~ 153 (260)
+ .|++.+.+..++-.
T Consensus 290 ~~~GGlGs~Va~~l~e 305 (356)
T PLN02683 290 WPQHGVGAEICASVVE 305 (356)
T ss_pred CcCCCHHHHHHHHHHH
Confidence 3 46676666666654
No 176
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=46.60 E-value=58 Score=27.51 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
...||++|=.... ..+...+.+.+.+++ .|+++..+.+.+.. +-+++ .+.|.+||+|+|+-
T Consensus 28 ~~~~i~~iptA~~-~~~~~~~~~~~~~~~-lG~~~~~~~~~~~~---------------~~~~~-~~~l~~ad~I~~~G- 88 (210)
T cd03129 28 AGARVLFIPTASG-DRDEYGEEYRAAFER-LGVEVVHLLLIDTA---------------NDPDV-VARLLEADGIFVGG- 88 (210)
T ss_pred CCCeEEEEeCCCC-ChHHHHHHHHHHHHH-cCCceEEEeccCCC---------------CCHHH-HHHHhhCCEEEEcC-
Confidence 3567877753322 245556677777777 68877766654320 11233 67899999999976
Q ss_pred ccCCCchHHHHHH
Q 024934 138 TRYGCMAAQMKAF 150 (260)
Q Consensus 138 tY~g~~~~~mK~f 150 (260)
|+..-.++.|
T Consensus 89 ---G~~~~~~~~l 98 (210)
T cd03129 89 ---GNQLRLLSVL 98 (210)
T ss_pred ---CcHHHHHHHH
Confidence 5544444443
No 177
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.17 E-value=49 Score=30.84 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=26.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT 102 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~ 102 (260)
.+++||. +|++...+...++.|++ .|+++.++++....|
T Consensus 234 ~di~Iia---~Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~P 272 (355)
T PTZ00182 234 KDVTIVG---YGSQVHVALKAAEELAK-EGISCEVIDLRSLRP 272 (355)
T ss_pred CCEEEEE---eCHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCC
Confidence 4666665 44455555555666666 789999999987644
No 178
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.09 E-value=1.5e+02 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=24.6
Q ss_pred eEEEEEec-CchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 61 KIFIVFYS-MYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 61 KVlIIy~S-~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
||.+|.-+ .+..-..+.+.+.+.+++ .|.++.+...
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~-~g~~v~~~~~ 37 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA-LGYELISTDA 37 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH-cCCEEEEEcC
Confidence 35555533 234456788999999988 8988876654
No 179
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=45.99 E-value=2e+02 Score=25.45 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHH---H
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFF---D 152 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~fl---D 152 (260)
|...++..+.+ .|.++.+++........... ..+.. .+ .. .+.+.++|.||+..|... .++..+ +
T Consensus 7 mG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~-~g~~~-~~---s~-~~~~~~advVil~vp~~~-----~~~~v~~g~~ 74 (288)
T TIGR01692 7 MGGPMAANLLK-AGHPVRVFDLFPDAVEEAVA-AGAQA-AA---SP-AEAAEGADRVITMLPAGQ-----HVISVYSGDE 74 (288)
T ss_pred hHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHH-cCCee-cC---CH-HHHHhcCCEEEEeCCChH-----HHHHHHcCcc
Confidence 55566666666 67888888765422111111 11110 01 11 345778999999999742 345544 2
Q ss_pred HhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc
Q 024934 153 STGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT 205 (260)
Q Consensus 153 ~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~ 205 (260)
.+.. ....|+. ++...+. ...+.+.+.+.+..+|..+++.+..
T Consensus 75 ~l~~----~~~~g~~---vid~st~---~p~~~~~~~~~~~~~g~~~vdaPv~ 117 (288)
T TIGR01692 75 GILP----KVAKGSL---LIDCSTI---DPDSARKLAELAAAHGAVFMDAPVS 117 (288)
T ss_pred hHhh----cCCCCCE---EEECCCC---CHHHHHHHHHHHHHcCCcEEECCCC
Confidence 2211 1123333 3333221 1234566777788889888876543
No 180
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=45.57 E-value=37 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=31.8
Q ss_pred CeEEEEEec-------CchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 60 LKIFIVFYS-------MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 60 ~KVlIIy~S-------~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|||++|..+ ..|-.+..+..+.+.|.+ .|+++.++.....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~-~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVA-RGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHh-cCceEEEEecCCC
Confidence 689988754 356777888888999988 8999999987654
No 181
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=45.04 E-value=1.1e+02 Score=24.50 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=38.4
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
+..-++|+|+--|. .+.+.++.-|.+ .|+.+.+.+-... .+ .+.+.+||.||-+
T Consensus 25 ~~~gk~v~VvGrs~-----~vG~pla~lL~~-~gatV~~~~~~t~-------------------~l-~~~v~~ADIVvsA 78 (140)
T cd05212 25 RLDGKKVLVVGRSG-----IVGAPLQCLLQR-DGATVYSCDWKTI-------------------QL-QSKVHDADVVVVG 78 (140)
T ss_pred CCCCCEEEEECCCc-----hHHHHHHHHHHH-CCCEEEEeCCCCc-------------------CH-HHHHhhCCEEEEe
Confidence 34577888876554 344444444545 6888888774321 13 4678999999999
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
++.-
T Consensus 79 tg~~ 82 (140)
T cd05212 79 SPKP 82 (140)
T ss_pred cCCC
Confidence 9876
No 182
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=44.93 E-value=35 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT 102 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~ 102 (260)
..+|+||. +|++-..|..+++.|++ .|++++++++.-..|
T Consensus 9 g~di~iia---~G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i~P 48 (124)
T PF02780_consen 9 GADITIIA---YGSMVEEALEAAEELEE-EGIKAGVIDLRTIKP 48 (124)
T ss_dssp SSSEEEEE---ETTHHHHHHHHHHHHHH-TTCEEEEEEEEEEES
T ss_pred CCCEEEEe---ehHHHHHHHHHHHHHHH-cCCceeEEeeEEEec
Confidence 45677776 56666677777888887 799999999976533
No 183
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.77 E-value=41 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=31.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
+|++|.||+-....+...+++.+.+-+++ .|+++.+..
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~ 40 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDE 40 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 47789999887778888899999998988 888887764
No 184
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=44.53 E-value=1.3e+02 Score=24.15 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||.+|= .|+ |...+++.|.+ .|.++..++..........+... . -.... .+-+.++|.|++..|-
T Consensus 1 m~~Ig~IG---lG~---mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~g~-~----~~~s~-~e~~~~~dvvi~~v~~ 67 (163)
T PF03446_consen 1 MMKIGFIG---LGN---MGSAMARNLAK-AGYEVTVYDRSPEKAEALAEAGA-E----VADSP-AEAAEQADVVILCVPD 67 (163)
T ss_dssp -BEEEEE-----SH---HHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHTTE-E----EESSH-HHHHHHBSEEEE-SSS
T ss_pred CCEEEEEc---hHH---HHHHHHHHHHh-cCCeEEeeccchhhhhhhHHhhh-h----hhhhh-hhHhhcccceEeeccc
Confidence 67777764 232 44555555555 68999999965322211111110 0 00011 3446788999988774
Q ss_pred cCCCchHHHHHHHHH--hcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc
Q 024934 139 RYGCMAAQMKAFFDS--TGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT 205 (260)
Q Consensus 139 Y~g~~~~~mK~flD~--~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~ 205 (260)
...++..++. +.. ...+|+.+ ..+.+. .-.+.+.+.+.+...|..+++.+..
T Consensus 68 -----~~~v~~v~~~~~i~~----~l~~g~ii---id~sT~---~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 68 -----DDAVEAVLFGENILA----GLRPGKII---IDMSTI---SPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp -----HHHHHHHHHCTTHGG----GS-TTEEE---EE-SS-----HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----chhhhhhhhhhHHhh----ccccceEE---EecCCc---chhhhhhhhhhhhhccceeeeeeee
Confidence 4567777776 321 12244443 333221 1234577888888899999887654
No 185
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=44.40 E-value=77 Score=27.59 Aligned_cols=76 Identities=21% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHh
Q 024934 75 GLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 75 ~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
..++.+.+.+++ .|.++..+.+-+..+.. ++... ...+.+||.|+|.||. .++.|++++
T Consensus 11 ~~~~~~~~~l~~-~G~~~~~~P~i~~~~~~------------~l~~~-l~~l~~~d~vvfTS~~-------av~~~~~~l 69 (248)
T COG1587 11 EQAEELAALLRK-AGAEPLELPLIEIEPLP------------DLEVA-LEDLDSADWVVFTSPN-------AVRFFFEAL 69 (248)
T ss_pred hhhHHHHHHHHh-CCCcceeecceeeecch------------hHHHH-HhccccCCEEEEECHH-------HHHHHHHHH
Confidence 345555666666 67766655554432210 01222 5666679999999863 578888877
Q ss_pred cccccCCCCCCCcEEEEE
Q 024934 155 GMLWKEGKLVGKPAGFFV 172 (260)
Q Consensus 155 ~~l~~~~~l~gK~~~if~ 172 (260)
...... .+++++++.++
T Consensus 70 ~~~~~~-~~~~~~i~aVG 86 (248)
T COG1587 70 KEQGLD-ALKNKKIAAVG 86 (248)
T ss_pred Hhhccc-ccccCeEEEEc
Confidence 543222 34567755544
No 186
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=44.33 E-value=2.2e+02 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=24.7
Q ss_pred HhhhhhcCEEEEEccccCCCc-hHHHHHHHHHh
Q 024934 123 AADLVEADGFLFGFPTRYGCM-AAQMKAFFDST 154 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~-~~~mK~flD~~ 154 (260)
.+...++|.+|+=+| +|.+ +...|+|++.+
T Consensus 136 ~EAvk~aei~I~ftP--fG~~t~~Iikki~~~i 166 (342)
T PRK00961 136 REAVADADIVITWLP--KGGMQPDIIEKFADDI 166 (342)
T ss_pred HHHhcCCCEEEEecC--CCCCchHHHHHHHhhC
Confidence 577889999999888 5554 78889999986
No 187
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.98 E-value=1.1e+02 Score=27.99 Aligned_cols=41 Identities=7% Similarity=0.027 Sum_probs=34.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|......-+...++...+.+++ .|++++++++.+.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACAR-VGIASFGKHLPAD 72 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4578888877776778889999999998 8999999999764
No 188
>PRK08727 hypothetical protein; Validated
Probab=43.84 E-value=31 Score=29.85 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=38.7
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
+.++|||.. .|.|. ++.++...+.+ .|..+..+.+.+... .+..+ .+.+..+|.||+==
T Consensus 42 ~~l~l~G~~G~GKTh-L~~a~~~~~~~-~~~~~~y~~~~~~~~--------------~~~~~-~~~l~~~dlLiIDD 101 (233)
T PRK08727 42 DWLYLSGPAGTGKTH-LALALCAAAEQ-AGRSSAYLPLQAAAG--------------RLRDA-LEALEGRSLVALDG 101 (233)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHH-cCCcEEEEeHHHhhh--------------hHHHH-HHHHhcCCEEEEeC
Confidence 457888765 78887 66676666666 677888887755311 11222 46778888888853
No 189
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=43.75 E-value=36 Score=33.84 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=26.2
Q ss_pred CeEEEEEecCch--hHHHHHHHHHHHccCCCCceEE
Q 024934 60 LKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGL 93 (260)
Q Consensus 60 ~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~ 93 (260)
+|+++|-.+++| ||...++.+++..++ .|+++.
T Consensus 1 ~~ilavtacp~GiAht~mAaeaL~~AA~~-~G~~i~ 35 (563)
T PRK10712 1 MKTLLIIDANLGQARAYMAKTLLGAAAAK-AGLEII 35 (563)
T ss_pred CCeEEEecCCCcHHHHHHHHHHHHHHHHH-CCCccc
Confidence 578888888876 777788999999888 787664
No 190
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=43.72 E-value=58 Score=29.57 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+++-||.++..| +...+++.+.+.+++ .|-+.-++.+.+..
T Consensus 208 ~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~-~gkk~y~~~~~~i~ 251 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGYLELIKRLKKLLKK-AGKKSYTLSVGEIN 251 (307)
T ss_dssp T--EEEEEEE-STTT--HHHHHHHHHHHHH-TT-EEEEEEESS--
T ss_pred cCCEEEEEEecCCCCCCHHHHHHHHHHHHH-cCCEEEEEEECCCC
Confidence 35788899988765 456789999999998 89999999998753
No 191
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=43.35 E-value=34 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=29.6
Q ss_pred CeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 60 LKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 60 ~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
||||+++-+. .|-.+.++..+++.|.+ .|++|+++-.
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~-~G~~V~v~~~ 38 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQS-RGHEVTIYTS 38 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHh-CCCeEEEEcC
Confidence 7899998764 46667788888999987 8999998864
No 192
>PRK10125 putative glycosyl transferase; Provisional
Probab=43.33 E-value=49 Score=31.15 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=34.2
Q ss_pred CeEEEEEec-CchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 60 LKIFIVFYS-MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 60 ~KVlIIy~S-~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
||||-|..+ ..|-+++++..+++.+.+ .|+++.+.-....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEecCC
Confidence 689977755 478899999999999988 8999999888764
No 193
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.32 E-value=44 Score=30.40 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.|+||++||-........+++.+.+.+++ .|+++.++..
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~ 40 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPS 40 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecC
Confidence 47889999877666777889999988987 8988877653
No 194
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=42.79 E-value=1.4e+02 Score=26.51 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=42.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcC-CCCC-C----CCCcccc-cH-hhhhhcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM-KVPP-R----DDDIPEI-SA-ADLVEAD 130 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~-~~~~-~----~dd~~~i-~~-~~l~~AD 130 (260)
||||.|| +. |+ |...++..+.+ .|.++.+++............. .... . ....... +. +.+.++|
T Consensus 1 mmkI~ii-G~--G~---mG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (325)
T PRK00094 1 MMKIAVL-GA--GS---WGTALAIVLAR-NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD 73 (325)
T ss_pred CCEEEEE-CC--CH---HHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence 6788776 33 43 44445555555 6788888876532222111110 0000 0 0001000 12 3457999
Q ss_pred EEEEEccccCCCchHHHHHHHHHh
Q 024934 131 GFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
.||+..|.+ .+..+++.+
T Consensus 74 ~vi~~v~~~------~~~~v~~~l 91 (325)
T PRK00094 74 LILVAVPSQ------ALREVLKQL 91 (325)
T ss_pred EEEEeCCHH------HHHHHHHHH
Confidence 999999974 455555554
No 195
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=42.78 E-value=98 Score=23.71 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEEEEccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II~GsPt 138 (260)
++|+||=.|.. ..+.+..+.+.+.+ .|.++..++......... . -++.+ +++ ..-|.+++..|
T Consensus 1 ksiAVvGaS~~--~~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~----~------~y~sl--~e~p~~iDlavv~~~- 64 (116)
T PF13380_consen 1 KSIAVVGASDN--PGKFGYRVLRNLKA-AGYEVYPVNPKGGEILGI----K------CYPSL--AEIPEPIDLAVVCVP- 64 (116)
T ss_dssp -EEEEET--SS--TTSHHHHHHHHHHH-TT-EEEEESTTCSEETTE----E-------BSSG--GGCSST-SEEEE-S--
T ss_pred CEEEEEcccCC--CCChHHHHHHHHHh-CCCEEEEECCCceEECcE----E------eeccc--cCCCCCCCEEEEEcC-
Confidence 46777777753 12234444444544 576666666554321110 0 11112 223 57799999887
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
+..+-.+++.+.. .|-...+|.++ . . -..+.+.+..+|+.+++.
T Consensus 65 -----~~~~~~~v~~~~~-------~g~~~v~~~~g-~---~----~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 -----PDKVPEIVDEAAA-------LGVKAVWLQPG-A---E----SEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -----HHHHHHHHHHHHH-------HT-SEEEE-TT-S---------HHHHHHHHHTT-EEEES
T ss_pred -----HHHHHHHHHHHHH-------cCCCEEEEEcc-h---H----HHHHHHHHHHcCCEEEeC
Confidence 5666777777642 24555555543 1 1 245677788899999864
No 196
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=42.77 E-value=58 Score=30.09 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=35.0
Q ss_pred CCeEEEEEecCch-hHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
.+++-||.++..| ++..+++.+.+-+++ .|.+..++-+.+..
T Consensus 232 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~in 274 (332)
T TIGR00322 232 GKKFGVVLSSKGGQGRLRLAKNLKKNLEE-AGKTVLIILLSNVS 274 (332)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCC
Confidence 4578888888755 567899999999999 89999999998753
No 197
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=42.76 E-value=21 Score=28.77 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 78 KRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 78 ~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
+.+.+.+++ .|++++.+++.+... .++ .+.|.+||+|.|+-
T Consensus 3 ~~~~~~f~~-~g~~v~~l~~~~~~~----------------~~~-~~~i~~ad~I~~~G 43 (154)
T PF03575_consen 3 EKFRKAFRK-LGFEVDQLDLSDRND----------------ADI-LEAIREADAIFLGG 43 (154)
T ss_dssp HHHHHHHHH-CT-EEEECCCTSCGH----------------HHH-HHHHHHSSEEEE--
T ss_pred HHHHHHHHH-CCCEEEEEeccCCCh----------------HHH-HHHHHhCCEEEECC
Confidence 566777887 899988888876311 123 67899999999863
No 198
>PRK06545 prephenate dehydrogenase; Validated
Probab=42.72 E-value=2.8e+02 Score=25.62 Aligned_cols=70 Identities=10% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHh
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
|...++..+.. .|.++.+++..... ........+...++....+ .+.+.+||.||++.|+. .+..++..+
T Consensus 11 iG~siA~~L~~-~G~~v~i~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~aDlVilavP~~------~~~~vl~~l 80 (359)
T PRK06545 11 IGGSLALAIKA-AGPDVFIIGYDPSA-AQLARALGFGVIDELAADL-QRAAAEADLIVLAVPVD------ATAALLAEL 80 (359)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCCH-HHHHHHhcCCCCcccccCH-HHHhcCCCEEEEeCCHH------HHHHHHHHH
Confidence 66666777776 78888888765432 1111111111111111112 23467999999999985 355666655
No 199
>PRK00211 sulfur relay protein TusC; Validated
Probab=42.63 E-value=67 Score=24.95 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=22.5
Q ss_pred CCeEEEEEec-CchhH--HHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYS-MYGHV--EGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S-~~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|+|+++|+.+ |||+. +...+.+.. +.. .+.++.++-+.+-
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala-~~a-~~~~v~vff~~Dg 43 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLA-TSA-FTEDIGVFFIDDG 43 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHH-Hhc-ccCCeeEEEEhhh
Confidence 7889988755 78863 233332222 222 2347777777663
No 200
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.58 E-value=1.1e+02 Score=27.91 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=35.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|..+...-+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (297)
T PRK14167 31 TPGLATVLMSDDPASETYVSMKQRDCEE-VGIEAIDVEIDPDA 72 (297)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4578888877777788889999999999 89999999998753
No 201
>PRK05642 DNA replication initiation factor; Validated
Probab=42.54 E-value=31 Score=29.87 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=37.1
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
..++|||+. .|.|. ++.++...+.+ .|..+..++..+... ....+ .+.+.++|.+|+
T Consensus 46 ~~l~l~G~~G~GKTH-Ll~a~~~~~~~-~~~~v~y~~~~~~~~--------------~~~~~-~~~~~~~d~Lii 103 (234)
T PRK05642 46 SLIYLWGKDGVGRSH-LLQAACLRFEQ-RGEPAVYLPLAELLD--------------RGPEL-LDNLEQYELVCL 103 (234)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCcEEEeeHHHHHh--------------hhHHH-HHhhhhCCEEEE
Confidence 567889876 89988 47777777665 577777777654311 01122 456777887766
No 202
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=42.53 E-value=1.3e+02 Score=25.46 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=43.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCC-CceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVD-GVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~-G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+|++|=.-. +..+...+.+.+.++. . |++++.+++.+. ++. .+.|.+||+|+|+-
T Consensus 31 ~~~i~~IptAs-~~~~~~~~~~~~a~~~-l~G~~~~~~~~~~~------------------~~~-~~~l~~ad~I~l~G- 88 (212)
T cd03146 31 RPKVLFVPTAS-GDRDEYTARFYAAFES-LRGVEVSHLHLFDT------------------EDP-LDALLEADVIYVGG- 88 (212)
T ss_pred CCeEEEECCCC-CCHHHHHHHHHHHHhh-ccCcEEEEEeccCc------------------ccH-HHHHhcCCEEEECC-
Confidence 45666654322 2445677788888888 7 888888876531 122 67899999999987
Q ss_pred ccCCCchHHHHHH
Q 024934 138 TRYGCMAAQMKAF 150 (260)
Q Consensus 138 tY~g~~~~~mK~f 150 (260)
|+....|+.|
T Consensus 89 ---G~~~~~~~~l 98 (212)
T cd03146 89 ---GNTFNLLAQW 98 (212)
T ss_pred ---chHHHHHHHH
Confidence 4444444443
No 203
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=42.49 E-value=18 Score=29.21 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=44.2
Q ss_pred CeEEEEEecC-----------chhH--HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh
Q 024934 60 LKIFIVFYSM-----------YGHV--EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL 126 (260)
Q Consensus 60 ~KVlIIy~S~-----------~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l 126 (260)
|||+||.+-. ||++ +.+.+.+.+...+ .|++++++.-... .- =+..+ .+..
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E---Ge-----------lid~I-~~a~ 64 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAE-LGVEVEFFQSNHE---GE-----------LIDWI-HEAR 64 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHH-TTEEEEEEE-SSH---HH-----------HHHHH-HHHT
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHH-CCCeEEEEecCCH---HH-----------HHHHH-HHHH
Confidence 6899999762 4542 4577777777777 8999998886431 00 00112 3444
Q ss_pred hhcCEEEEEcccc-CCCchHHHHHHHH
Q 024934 127 VEADGFLFGFPTR-YGCMAAQMKAFFD 152 (260)
Q Consensus 127 ~~AD~II~GsPtY-~g~~~~~mK~flD 152 (260)
.++|+||+=---| ..++ .+...+.
T Consensus 65 ~~~dgiIINpga~thtS~--Ai~DAl~ 89 (140)
T PF01220_consen 65 DDVDGIIINPGAYTHTSI--AIRDALK 89 (140)
T ss_dssp CTTSEEEEE-GGGGHT-H--HHHHHHH
T ss_pred hhCCEEEEccchhccccH--HHHHHHH
Confidence 5689999987777 4444 3444444
No 204
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=42.23 E-value=82 Score=25.89 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=30.5
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
||+|+-.+........++.+.+ ... ..++++++++.+.. . ..++.++|+|||...-.
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~-~g~-~~~~~~~~~~~~~~-------------------~-~~~~~~~dgvil~Gg~~ 57 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLRE-AGA-ETIEIDVVDVYAGE-------------------L-LPDLDDYDGLVILGGPM 57 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHh-cCC-CCceEEEEecCCCC-------------------C-CCCcccCCEEEECCCCc
Confidence 5777776653212222222222 111 12688888876531 1 24567999998876533
No 205
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=41.95 E-value=77 Score=27.61 Aligned_cols=21 Identities=5% Similarity=-0.138 Sum_probs=15.2
Q ss_pred HHHHHHccCCCCceEEEEEcCC
Q 024934 78 KRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 78 ~~i~~~l~~~~G~ev~li~l~~ 99 (260)
-.-.+.|++ .|+++++.....
T Consensus 29 ~~p~~~l~~-aG~~V~~aS~~g 49 (232)
T cd03148 29 LLPLYHLHA-AGFDFDVATLSG 49 (232)
T ss_pred HHHHHHHHH-CCCEEEEEeCCC
Confidence 334566777 899999988854
No 206
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=41.92 E-value=38 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=28.8
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
|||+|+-+...|+.. .+..+++.+.+ .|+++.++-
T Consensus 1 ~~i~~~~g~~~g~~~-~~~~La~~L~~-~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGTGGHIF-PALAVAEELIK-RGVEVLWLG 35 (348)
T ss_pred CeEEEEeCccHHHHh-HHHHHHHHHHh-CCCEEEEEe
Confidence 489999888889887 66678888887 788988874
No 207
>PRK12377 putative replication protein; Provisional
Probab=41.66 E-value=19 Score=31.79 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=43.0
Q ss_pred CeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.+-++++|.+ +|-|. +|.+|+..+.+ .|..+.++.+.+... ....... .......+ .+.+.++|.|||-=
T Consensus 101 ~~~l~l~G~~GtGKTh-La~AIa~~l~~-~g~~v~~i~~~~l~~-~l~~~~~---~~~~~~~~-l~~l~~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNH-LAAAIGNRLLA-KGRSVIVVTVPDVMS-RLHESYD---NGQSGEKF-LQELCKVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEEEHHHHHH-HHHHHHh---ccchHHHH-HHHhcCCCEEEEcC
Confidence 3567888875 78887 77777777766 688888888765421 1111110 00111223 56788999999654
No 208
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=41.52 E-value=1e+02 Score=25.53 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=36.2
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
...+||+||-.+.. +...+++.|.+ .|+++.+.+-.. .++ .+.+.+||.||.++
T Consensus 42 l~gk~vlViG~G~~-----~G~~~a~~L~~-~g~~V~v~~r~~-------------------~~l-~~~l~~aDiVIsat 95 (168)
T cd01080 42 LAGKKVVVVGRSNI-----VGKPLAALLLN-RNATVTVCHSKT-------------------KNL-KEHTKQADIVIVAV 95 (168)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHHHhh-CCCEEEEEECCc-------------------hhH-HHHHhhCCEEEEcC
Confidence 35788999875432 22233444444 576666666321 123 56799999999999
Q ss_pred cccC
Q 024934 137 PTRY 140 (260)
Q Consensus 137 PtY~ 140 (260)
+.=.
T Consensus 96 ~~~~ 99 (168)
T cd01080 96 GKPG 99 (168)
T ss_pred CCCc
Confidence 8744
No 209
>PRK13054 lipid kinase; Reviewed
Probab=41.44 E-value=75 Score=28.49 Aligned_cols=39 Identities=8% Similarity=-0.139 Sum_probs=24.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.|+|+++||- +.+...+....+++.+.+ .|++++++.-.
T Consensus 2 ~~~~~~~i~N-~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~ 40 (300)
T PRK13054 2 TFPKSLLILN-GKSAGNEELREAVGLLRE-EGHTLHVRVTW 40 (300)
T ss_pred CCceEEEEEC-CCccchHHHHHHHHHHHH-cCCEEEEEEec
Confidence 3778887775 333334555556667877 78887765443
No 210
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.37 E-value=46 Score=29.04 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=12.3
Q ss_pred CCeEEEEEecCchh
Q 024934 59 KLKIFIVFYSMYGH 72 (260)
Q Consensus 59 m~KVlIIy~S~~Gn 72 (260)
||||+|||.-.+|.
T Consensus 1 ~mki~vlt~g~yG~ 14 (224)
T COG1810 1 MMKILVLTDGEYGK 14 (224)
T ss_pred CcEEEEEeeccchH
Confidence 89999999888884
No 211
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=40.13 E-value=77 Score=25.85 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=44.4
Q ss_pred CCeEEEEEecC-----------chhH--HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhh
Q 024934 59 KLKIFIVFYSM-----------YGHV--EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAAD 125 (260)
Q Consensus 59 m~KVlIIy~S~-----------~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~ 125 (260)
++|||||.+-. ||++ +.+-+.+.+...+ .|++++.+.-... . +=+..+ .+.
T Consensus 1 ~~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~-~g~~~~~~QSN~E---G-----------elId~i-~~a 64 (146)
T PRK13015 1 KGKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEA-LGLEVEFRQSNHE---G-----------ELIDWI-HEA 64 (146)
T ss_pred CCEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCcH---H-----------HHHHHH-HHh
Confidence 36788888652 5643 4566777777777 7889988875431 0 000111 233
Q ss_pred hhhcCEEEEEccccCCCchHHHHHHHHHh
Q 024934 126 LVEADGFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 126 l~~AD~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
..++|+||+=---|- ..+-.+..-+..+
T Consensus 65 ~~~~dgiIINpga~T-HtSiAl~DAl~~~ 92 (146)
T PRK13015 65 RGDVAGIVINPGAYT-HTSVAIRDALAAL 92 (146)
T ss_pred hhcCCEEEEcchHHh-hhHHHHHHHHHcC
Confidence 356799888665553 1222344444443
No 212
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=39.50 E-value=1.2e+02 Score=23.93 Aligned_cols=48 Identities=6% Similarity=0.009 Sum_probs=31.1
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
...+.++|++||..-.-...--..++.|+..+... ...+.++.++++-
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK 118 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNK 118 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 34567899999988876544445667777766421 2356777666653
No 213
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=39.46 E-value=2.1e+02 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..++|+||-+- .+++..+++.+.+ .|+++++++...
T Consensus 515 ~~~~IlVID~g-ds~~~~l~~~L~~-----~G~~v~vv~~~~ 550 (717)
T TIGR01815 515 EGRRILLVDHE-DSFVHTLANYLRQ-----TGASVTTLRHSH 550 (717)
T ss_pred CCCEEEEEECC-ChhHHHHHHHHHH-----CCCeEEEEECCC
Confidence 57899999755 5677777766544 578888887653
No 214
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.29 E-value=1.4e+02 Score=27.04 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|......-+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQ-VGIDSQVITLPEHT 72 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4578888877777778888999999998 89999999998753
No 215
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=39.27 E-value=1.4e+02 Score=28.94 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=45.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
-..|.||. +|+.-..|...++.|++ .|++++++++....|. |...+ .+.+.+...||..-=-
T Consensus 340 G~DvtIva---~G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPl-------------D~~~i-~~sv~kt~~vvtvEE~ 401 (464)
T PRK11892 340 GKDVTIVS---FSIGMTYALKAAEELAK-EGIDAEVIDLRTIRPM-------------DTETI-VESVKKTNRLVTVEEG 401 (464)
T ss_pred CCCEEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcC-------------CHHHH-HHHHHhcCeEEEEeCC
Confidence 34666666 45555566666667766 7999999999876441 11112 3445566655544332
Q ss_pred c-CCCchHHHHHHHHH
Q 024934 139 R-YGCMAAQMKAFFDS 153 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~ 153 (260)
| .|++...+-.++-.
T Consensus 402 ~~~gGlG~~va~~l~e 417 (464)
T PRK11892 402 WPQSGVGAEIAARVME 417 (464)
T ss_pred CcCCcHHHHHHHHHHH
Confidence 2 46666666665544
No 216
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=39.22 E-value=2e+02 Score=23.60 Aligned_cols=47 Identities=6% Similarity=-0.020 Sum_probs=28.2
Q ss_pred hhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 125 DLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.+..+|++||..-.-...-...++.|+.++... ....++|+.++++-
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~NK 113 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEV---KEDKFVPIVVVGNK 113 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEc
Confidence 467999999987654433334455665554321 12256787777764
No 217
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=39.03 E-value=21 Score=25.86 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHccCCCC---ceEEEE-EcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 76 LAKRMKKGVDGVDG---VEGLLY-RVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 76 lA~~i~~~l~~~~G---~ev~li-~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
|+..|.+++.+ .| .++.++ +-................... .. .+-+.++|.||++.|-+.
T Consensus 10 mg~al~~~l~~-~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~---~~-~~~~~~advvilav~p~~ 73 (96)
T PF03807_consen 10 MGSALARGLLA-SGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD---DN-EEAAQEADVVILAVKPQQ 73 (96)
T ss_dssp HHHHHHHHHHH-TTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE---EH-HHHHHHTSEEEE-S-GGG
T ss_pred HHHHHHHHHHH-CCCCceeEEeeccCcHHHHHHHHHhhccccccC---Ch-HHhhccCCEEEEEECHHH
Confidence 77777777766 66 666644 332211111111111100000 11 455778999999998653
No 218
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.81 E-value=51 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=27.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+|+|+++|...+.+.-...+++.+.+ .|+.+.++-+.+.
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk-~~I~v~vI~~G~~ 147 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKK-NNVSVDIINFGEI 147 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHH-cCCeEEEEEeCCC
Confidence 4699999999844333334345556666 6888888888764
No 219
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=38.56 E-value=2.9e+02 Score=24.66 Aligned_cols=121 Identities=11% Similarity=0.074 Sum_probs=61.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||.|| + .|+ |...++..+.+ .|.++.+++............. .. ..... .+.+.++|.||+..|.
T Consensus 1 m~~Ig~I-G--lG~---mG~~mA~~l~~-~G~~V~v~d~~~~~~~~~~~~g-~~----~~~s~-~~~~~~aDvVi~~vp~ 67 (296)
T PRK15461 1 MAAIAFI-G--LGQ---MGSPMASNLLK-QGHQLQVFDVNPQAVDALVDKG-AT----PAASP-AQAAAGAEFVITMLPN 67 (296)
T ss_pred CCeEEEE-e--eCH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHcC-Cc----ccCCH-HHHHhcCCEEEEecCC
Confidence 4566665 2 232 44455555555 6788888876543221111110 00 00111 3456789999999997
Q ss_pred cCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccc
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYT 205 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~ 205 (260)
.. .++..+.....+. ..+ +|+. ++..++ +. ..+...+...+...|..+++.+..
T Consensus 68 ~~-----~~~~vl~~~~~i~--~~l~~g~l---vid~sT--~~-p~~~~~l~~~l~~~g~~~ldapV~ 122 (296)
T PRK15461 68 GD-----LVRSVLFGENGVC--EGLSRDAL---VIDMST--IH-PLQTDKLIADMQAKGFSMMDVPVG 122 (296)
T ss_pred HH-----HHHHHHcCcccHh--hcCCCCCE---EEECCC--CC-HHHHHHHHHHHHHcCCcEEEccCC
Confidence 52 3444443221110 112 3333 333332 11 234467778888889888876543
No 220
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=38.31 E-value=1.2e+02 Score=30.58 Aligned_cols=72 Identities=18% Similarity=0.078 Sum_probs=55.6
Q ss_pred EEEEE----ecCch----hHHHHHHHHHHHccCCCCc-eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEE
Q 024934 62 IFIVF----YSMYG----HVEGLAKRMKKGVDGVDGV-EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGF 132 (260)
Q Consensus 62 VlIIy----~S~~G----nT~~lA~~i~~~l~~~~G~-ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~I 132 (260)
=++|| +|=+. ++..+|..++..|.+ .|+ -+|+.-|.+.. ...=.-||++
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~e-lG~T~IELMPv~e~p---------------------~~~sWGYq~~ 201 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKE-LGITHIELMPVAEHP---------------------GDRSWGYQGT 201 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHH-hCCCEEEEcccccCC---------------------CCCCCCCCcc
Confidence 45667 55333 688999999999999 887 45777776641 1223589999
Q ss_pred EEEccccCCCchHHHHHHHHHhc
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~ 155 (260)
.+=+|+--++-|..+|.|+|.+.
T Consensus 202 g~yAp~sryGtPedfk~fVD~aH 224 (628)
T COG0296 202 GYYAPTSRYGTPEDFKALVDAAH 224 (628)
T ss_pred eeccccccCCCHHHHHHHHHHHH
Confidence 99999998888999999999875
No 221
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.21 E-value=1.5e+02 Score=25.37 Aligned_cols=38 Identities=13% Similarity=-0.057 Sum_probs=28.8
Q ss_pred eEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
||.+|+.+. +.....+.+.+.+.+++ .|.++.++....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~~v~~~~~~~ 40 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGVDVEYRGPET 40 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCEEEEECCCC
Confidence 577777553 45677899999999988 899888776543
No 222
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=38.18 E-value=96 Score=22.69 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=29.8
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.++.+.+..++ .|+++.+--=...- -...++.+++..||.|||..-+
T Consensus 2 AAeaL~~aA~~-~G~~i~VEtqg~~g---------------~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 2 AAEALESAAKA-KGWEVKVETQGSIG---------------LENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHHH-CCCeEEEEecCCcC---------------cCCCCCHHHHHhCCEEEEEecC
Confidence 45677777777 78877643322210 0123456889999999998654
No 223
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=37.71 E-value=1.5e+02 Score=22.97 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=28.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+..+|+++|..-.-...-...++.|+..+.. ...+.|+.++++-
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~-----~~~~~p~iiv~nK 115 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEA-----ECGDIPMVLVQTK 115 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 456799999998776554433455566655431 2346777666653
No 224
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=37.70 E-value=2.9e+02 Score=24.39 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
++||.|| +. |+ |...++..+.+ .|.++.+++............ .+.. .... .+.+.++|.||+..|.
T Consensus 2 ~~~Igvi-G~--G~---mG~~~a~~l~~-~g~~v~~~d~~~~~~~~~~~~-g~~~----~~~~-~e~~~~~d~vi~~vp~ 68 (296)
T PRK11559 2 TMKVGFI-GL--GI---MGKPMSKNLLK-AGYSLVVYDRNPEAVAEVIAA-GAET----ASTA-KAVAEQCDVIITMLPN 68 (296)
T ss_pred CceEEEE-cc--CH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHC-CCee----cCCH-HHHHhcCCEEEEeCCC
Confidence 4677666 32 32 33333344444 577887777543221111111 1100 0111 2345789999999997
Q ss_pred cCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
. ..++..+.....+ ...+ .|+ +|+..++. ...+...+...+...|+.++..+.
T Consensus 69 ~-----~~~~~v~~~~~~~--~~~~~~g~---iiid~st~---~~~~~~~l~~~~~~~g~~~~d~pv 122 (296)
T PRK11559 69 S-----PHVKEVALGENGI--IEGAKPGT---VVIDMSSI---APLASREIAAALKAKGIEMLDAPV 122 (296)
T ss_pred H-----HHHHHHHcCcchH--hhcCCCCc---EEEECCCC---CHHHHHHHHHHHHHcCCcEEEcCC
Confidence 3 3445444211000 0112 233 33333321 123345667777777877776543
No 225
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.60 E-value=3.1e+02 Score=24.79 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=33.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.....-.+...++...+.+++ .|++++++++.+.
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 72 (284)
T PRK14179 32 VPGLVVILVGDNPASQVYVRNKERSALA-AGFKSEVVRLPET 72 (284)
T ss_pred CceEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577777777666677888888899988 8999999999865
No 226
>PRK08116 hypothetical protein; Validated
Probab=37.58 E-value=44 Score=29.72 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=39.7
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
.-+++||++ +|-|. +|.+|+..+.+ .|..+.++++.+... .......- ....+..++ .+.+.++|.|||
T Consensus 115 ~gl~l~G~~GtGKTh-La~aia~~l~~-~~~~v~~~~~~~ll~-~i~~~~~~-~~~~~~~~~-~~~l~~~dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTY-LAACIANELIE-KGVPVIFVNFPQLLN-RIKSTYKS-SGKEDENEI-IRSLVNADLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHHHHH-cCCeEEEEEHHHHHH-HHHHHHhc-cccccHHHH-HHHhcCCCEEEE
Confidence 458888886 78877 66678888766 577887777655311 11111000 000111223 466788999883
No 227
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=37.16 E-value=62 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.3
Q ss_pred hcCEEEEEccccCCCchHHHHHHHHHhc
Q 024934 128 EADGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 128 ~AD~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
..|.|+|.||. .+++|++.+.
T Consensus 170 ~~d~i~f~S~~-------~~~~f~~~~~ 190 (240)
T PRK09189 170 PFDAVLLYSRV-------AARRFFALMR 190 (240)
T ss_pred CCCEEEEeCHH-------HHHHHHHHHh
Confidence 46999999987 4688888764
No 228
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.10 E-value=1.7e+02 Score=21.48 Aligned_cols=39 Identities=13% Similarity=-0.017 Sum_probs=30.1
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEE
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFF 171 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if 171 (260)
...+.++|.||+-+-.-...+...+|....+ .|+|+...
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~ 81 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYS 81 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEE
Confidence 5788999999999888777777777776665 46886443
No 229
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.06 E-value=1.3e+02 Score=27.41 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=34.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 71 (295)
T PRK14174 31 VPGLTVIIVGEDPASQVYVRNKAKSCKE-IGMNSTVIELPAD 71 (295)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577888877777778889999999998 8999999999875
No 230
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=37.05 E-value=1.8e+02 Score=25.03 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=27.7
Q ss_pred eEEEEEec----CchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 61 KIFIVFYS----MYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 61 KVlIIy~S----~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
||.+|..+ .+.....+.+.+.+.+++ .|.++.+....
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~gy~~~i~~~~ 41 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LGIEYKYVESK 41 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cCCeEEEEecC
Confidence 57777743 345667899999999998 89888887554
No 231
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=37.03 E-value=1.6e+02 Score=27.81 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=39.5
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYG 141 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g 141 (260)
++|.|+|..+..+..++ .+++ .|.++-++++.-..|.+- ..+ .+-+..++.|++-==.+..
T Consensus 265 viV~~GS~~~~~keav~----~LR~-~G~kVGllri~~~rPFP~-------------~~i-~~~l~~~k~ViVvE~n~s~ 325 (394)
T PRK08367 265 IFVTMGSLAGTLKEFVD----KLRE-EGYKVGAAKLTVYRPFPV-------------EEI-RALAKKAKVLAFLEKNISF 325 (394)
T ss_pred EEEEeCccHHHHHHHHH----HHHh-cCCcceeEEEeEecCCCH-------------HHH-HHHHccCCEEEEEeCCCCC
Confidence 45666776665555554 4555 688888999876644221 112 3456788888766555433
Q ss_pred CchHHH
Q 024934 142 CMAAQM 147 (260)
Q Consensus 142 ~~~~~m 147 (260)
+..++|
T Consensus 326 g~~g~l 331 (394)
T PRK08367 326 GLGGAV 331 (394)
T ss_pred CCCCcH
Confidence 334454
No 232
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=36.94 E-value=57 Score=28.44 Aligned_cols=27 Identities=4% Similarity=-0.140 Sum_probs=19.7
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcc
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGM 156 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~ 156 (260)
..++.+||.|||.|+. .++.|++.+..
T Consensus 50 l~~l~~~d~iifTS~n-------aV~~~~~~l~~ 76 (255)
T PRK05752 50 LLELDRYCAVIVVSKP-------AARLGLELLDR 76 (255)
T ss_pred HhcCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 3567899999999963 46777776643
No 233
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=36.93 E-value=76 Score=26.53 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=34.3
Q ss_pred HHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhc
Q 024934 77 AKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 77 A~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
...+.+.+++ .|+++..+.+.+..+.. ...+... ...+..+|.|||.|| ..++.|++.+.
T Consensus 10 ~~~l~~~L~~-~G~~~~~~p~~~~~~~~----------~~~~~~~-~~~~~~~~~iiftS~-------~av~~~~~~~~ 69 (239)
T cd06578 10 ADELAALLEA-LGAEVLELPLIEIEPLD----------DAELDAA-LADLDEYDWLIFTSP-------NAVEAFFEALE 69 (239)
T ss_pred hHHHHHHHHH-cCCcEEEeeeEEEecCC----------hHHHHHH-HHhcCCCCEEEEECH-------HHHHHHHHHHH
Confidence 4455566666 67777766665542100 0011111 345568999999998 34566666554
No 234
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=36.84 E-value=1.5e+02 Score=25.27 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE----
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF---- 134 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~---- 134 (260)
|++||+|= ...+.|..+++++.+ .|.++.+++=.+. ... .-+-.+.|+||+
T Consensus 1 ~~~IL~ID-NyDSFtyNLv~yl~~-----lg~~v~V~rnd~~------------------~~~-~~~~~~pd~iviSPGP 55 (191)
T COG0512 1 MMMILLID-NYDSFTYNLVQYLRE-----LGAEVTVVRNDDI------------------SLE-LIEALKPDAIVISPGP 55 (191)
T ss_pred CceEEEEE-CccchHHHHHHHHHH-----cCCceEEEECCcc------------------CHH-HHhhcCCCEEEEcCCC
Confidence 67888875 345778888887554 3556666654321 111 112246899999
Q ss_pred EccccCCCchHHHHHHHH
Q 024934 135 GFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 135 GsPtY~g~~~~~mK~flD 152 (260)
|+|.-.|.+...++.|-.
T Consensus 56 G~P~d~G~~~~~i~~~~~ 73 (191)
T COG0512 56 GTPKDAGISLELIRRFAG 73 (191)
T ss_pred CChHHcchHHHHHHHhcC
Confidence 578877777777777633
No 235
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=36.64 E-value=47 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.0
Q ss_pred EEEEEecC-chhHHHHHHHHHHHccCC--CCceEEEEEcCCC
Q 024934 62 IFIVFYSM-YGHVEGLAKRMKKGVDGV--DGVEGLLYRVPET 100 (260)
Q Consensus 62 VlIIy~S~-~GnT~~lA~~i~~~l~~~--~G~ev~li~l~~~ 100 (260)
|||++.|. .|| ...|++|++.+... .+++|+++|+-+.
T Consensus 1 ilils~~~G~GH-~~aa~al~~~~~~~~~~~~~v~~~d~~~~ 41 (382)
T PLN02605 1 VLILMSDTGGGH-RASAEAIKDAFQLEFGDEYQVFIVDLWKE 41 (382)
T ss_pred CEEEEEcCCcCh-HHHHHHHHHHHHhhcCCCeeEEEEehhhh
Confidence 68999886 577 66899999998641 3467778887644
No 236
>PRK00861 putative lipid kinase; Reviewed
Probab=36.51 E-value=1e+02 Score=27.57 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=24.2
Q ss_pred CCeEEEEEec--CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYS--MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S--~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+|+++|+-. ..|+.....+.+...+++ +.+++++....
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~--~~~~~~~~t~~ 42 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEP--EMDLDIYLTTP 42 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHh--cCceEEEEccC
Confidence 6788888843 344555566777777765 35666665443
No 237
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.27 E-value=1.3e+02 Score=27.25 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=33.7
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (278)
T PRK14172 33 PKIASILVGNDGGSIYYMNNQEKVANS-LGIDFKKIKLDES 72 (278)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 577888877777778888888899988 8999999999865
No 238
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=36.21 E-value=1.8e+02 Score=23.38 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=24.3
Q ss_pred hhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 126 LVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 126 l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
+.++|++||..-.-.-.--...+.++..+. ....+.+.|+.++++=
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~---~~~~~~~~piilv~NK 123 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRML---NEDELRDAVILVFANK 123 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHh---hCHhhcCCcEEEEEeC
Confidence 689999999644322111223344444432 1123456777777663
No 239
>PRK06444 prephenate dehydrogenase; Provisional
Probab=36.05 E-value=66 Score=27.38 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=18.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGL 93 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~ 93 (260)
|||.||=++. .|.+.+...+++ .|.+|.
T Consensus 1 ~~~~iiG~~G-----~mG~~~~~~~~~-~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNG-----RLGRVLCSILDD-NGLGVY 28 (197)
T ss_pred CEEEEEecCC-----cHHHHHHHHHHh-CCCEEE
Confidence 4777776442 366777777877 777663
No 240
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=35.73 E-value=1.6e+02 Score=23.12 Aligned_cols=46 Identities=9% Similarity=-0.009 Sum_probs=26.4
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+..+|+++|..=+-.-.--..++.|+..+... ...+.++.++++
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~n 114 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVILVGN 114 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCCEEEEEE
Confidence 4568999999975544333233455565554321 234567766666
No 241
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.70 E-value=43 Score=23.42 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
|++.+|+|.|.+. |-.+.+.+++ .|+.++++.++...
T Consensus 1 m~~~~i~F~st~~-----a~~~ek~lk~-~gi~~~liP~P~~i 37 (73)
T PF11823_consen 1 MKYYLITFPSTHD-----AMKAEKLLKK-NGIPVRLIPTPREI 37 (73)
T ss_pred CceEEEEECCHHH-----HHHHHHHHHH-CCCcEEEeCCChhc
Confidence 6788899977542 2223344555 78899999887643
No 242
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=35.61 E-value=4.1e+02 Score=25.95 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=14.4
Q ss_pred cCCCCeEEEEEecCchhHH
Q 024934 56 EITKLKIFIVFYSMYGHVE 74 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~ 74 (260)
+....+|||++.|.++..-
T Consensus 56 srtDp~VLVFvES~YS~lG 74 (487)
T PF12062_consen 56 SRTDPKVLVFVESQYSQLG 74 (487)
T ss_pred cCCCCeEEEEEeeccchhh
Confidence 4457899999999886543
No 243
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.36 E-value=1.5e+02 Score=26.91 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=35.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|.......+...++...+.+++ .|++++++++.+..
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAE-VGITSIRRDLPADA 73 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4678888877777788889999999998 89999999998753
No 244
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=35.23 E-value=2e+02 Score=22.10 Aligned_cols=47 Identities=9% Similarity=-0.060 Sum_probs=30.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||....-...-...+..|++.+... ...+.|..++++-
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK 114 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNK 114 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEc
Confidence 4567899999998776544344556677765321 1246787777764
No 245
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=35.18 E-value=59 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=29.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCce-EEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVE-GLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~e-v~li~l 97 (260)
.+||+++++|..|.+..+...+.+.+++ .+.+ +++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~-~~i~~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQD-AGLSQISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHH-cCCCeeEEEEe
Confidence 5789999999999988888888888877 5543 555543
No 246
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.13 E-value=80 Score=26.56 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=28.3
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|+||=+. .+|...+++.+. + .|+++++++ . .+++.++|+||+..+
T Consensus 2 i~~~d~~-~~~~~~i~~~l~----~-~G~~v~~~~--~-----------------------~~~l~~~d~iiipG~ 46 (205)
T PRK13141 2 IAIIDYG-MGNLRSVEKALE----R-LGAEAVITS--D-----------------------PEEILAADGVILPGV 46 (205)
T ss_pred EEEEEcC-CchHHHHHHHHH----H-CCCeEEEEC--C-----------------------HHHhccCCEEEECCC
Confidence 5555443 566666666544 4 577787753 1 345678999999654
No 247
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=35.12 E-value=1.7e+02 Score=25.77 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceE-EEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh--hcCEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEG-LLYRVPETLTREALDHMKVPPRDDDIPEISAADLV--EADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev-~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~--~AD~II~ 134 (260)
...||.|||.. +...+.+++.+.+.+++ .|.++ ..+.+.... .++..+ ..++. ..|.|++
T Consensus 134 g~~~v~iv~~~-~~~g~~~~~~~~~~~~~-~G~~vv~~~~~~~~~--------------~d~~~~-~~~l~~~~~d~v~~ 196 (343)
T PF13458_consen 134 GAKKVAIVYPD-DPYGRSLAEAFRKALEA-AGGKVVGEIRYPPGD--------------TDFSAL-VQQLKSAGPDVVVL 196 (343)
T ss_dssp TTSEEEEEEES-SHHHHHHHHHHHHHHHH-TTCEEEEEEEE-TTS--------------SHHHHH-HHHHHHTTTSEEEE
T ss_pred CCcEEEEEecC-chhhhHHHHHHHHHHhh-cCceeccceeccccc--------------ccchHH-HHHHhhcCCCEEEE
Confidence 36789998855 55667889999999988 78875 244443211 122222 44554 5888766
Q ss_pred EccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 135 GFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 135 GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.+. +..+..|+..+... .+..+.+.++.+.
T Consensus 197 ~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 226 (343)
T PF13458_consen 197 AGD------PADAAAFLRQLRQL----GLKPPRIPLFGTS 226 (343)
T ss_dssp EST------HHHHHHHHHHHHHT----TGCSCTEEEEEGG
T ss_pred ecc------chhHHHHHHHHHhh----ccccccceeeccc
Confidence 552 34444555544321 3455555455443
No 248
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=34.61 E-value=87 Score=29.04 Aligned_cols=39 Identities=8% Similarity=0.078 Sum_probs=29.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.-+|+.|||-|.+|. ..++.+.+.+++ .|.++..+.+..
T Consensus 123 ~wk~vaiiYd~~~~~--~~lq~l~~~~~~-~g~~v~~~~~~~ 161 (371)
T cd06388 123 EWNRFVFLYDTDRGY--SILQAIMEKAGQ-NGWQVSAICVEN 161 (371)
T ss_pred CceEEEEEecCCccH--HHHHHHHHhhHh-cCCeeeeEEecc
Confidence 467899999877775 447888888887 788877665543
No 249
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.61 E-value=1.5e+02 Score=26.83 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=34.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14166 30 ESCLAVILVGDNPASQTYVKSKAKACEE-CGIKSLVYHLNEN 70 (282)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577788877777778889999999998 8999999999864
No 250
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=34.60 E-value=65 Score=27.59 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=31.1
Q ss_pred eEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
||+++..+. .|....++..+++.|.+ .|.+|.++.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAE-KGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 678888764 47778888889999987 7999999877654
No 251
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=34.53 E-value=2.2e+02 Score=23.59 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=32.7
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.-+.++|++||.+-+-.-.-...++.|++.+.. ...+-|+.++++
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGN 118 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGN 118 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 345799999999998887777778899998742 124556656554
No 252
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.27 E-value=3.6e+02 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|.....-.+...++...+.+++ .|++++++++.+..
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 73 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACED-NGFHSLKDRYPADL 73 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4578888877766778889999999998 89999999998653
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=34.09 E-value=51 Score=29.01 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=43.5
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+.++++|.+ +|.|. ++.+|+..+.. .|..+.++.+.+..- ....... ..+.....+ .+.+..+|.|||=-.-.
T Consensus 100 ~~~~l~G~~GtGKTh-La~aia~~l~~-~g~~v~~it~~~l~~-~l~~~~~--~~~~~~~~~-l~~l~~~dlLvIDDig~ 173 (244)
T PRK07952 100 ASFIFSGKPGTGKNH-LAAAICNELLL-RGKSVLIITVADIMS-AMKDTFS--NSETSEEQL-LNDLSNVDLLVIDEIGV 173 (244)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEEHHHHHH-HHHHHHh--hccccHHHH-HHHhccCCEEEEeCCCC
Confidence 467888875 79887 56667777766 688888888766421 1111110 000111223 56788999999865533
No 254
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=34.01 E-value=2.1e+02 Score=22.79 Aligned_cols=48 Identities=6% Similarity=-0.099 Sum_probs=26.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+..+|++||....-...-....+.++.++.. ...+.++|+.++++=
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~---~~~~~~~p~viv~NK 125 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLA---HEDLRKAVLLVLANK 125 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCCEEEEEEC
Confidence 346899999998765433212223333433311 123567888777764
No 255
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.01 E-value=2.4e+02 Score=22.37 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=40.2
Q ss_pred CCeEEEEEecCchhHHHHH-HHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLA-KRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA-~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|++-.|+.++..|..+.+. ..+...++. .|.++ +++....|.+ ++ .+.+.+.+.=+++-.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eV--i~LG~~vp~e---------------~i-~~~a~~~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTE-AGFEV--INLGVMTSQE---------------EF-IDAAIETDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEE--EECCCCCCHH---------------HH-HHHHHHcCCCEEEEc
Confidence 3444455556544333333 233344455 67655 6666543321 22 344444444344444
Q ss_pred ccCCCchHHHHHHHHHhc
Q 024934 138 TRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~ 155 (260)
...+..-..++.+++.+.
T Consensus 62 ~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 62 SLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CccccCHHHHHHHHHHHH
Confidence 455566777889998875
No 256
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=33.94 E-value=3.1e+02 Score=23.99 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=33.2
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
.+.+.++|.|||++|+. .+..++..+.. .+ ++..+++-.++. ....+..+.+.+. .+..+|+.
T Consensus 40 ~~~~~~~DlvvlavP~~------~~~~~l~~~~~-----~~--~~~~iv~Dv~Sv---K~~~~~~~~~~~~-~~~~~v~~ 102 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVS------AIEDVLEEIAP-----YL--KPGAIVTDVGSV---KAPIVEAMERLLP-EGVRFVGG 102 (258)
T ss_dssp HHHGGCCSEEEE-S-HH------HHHHHHHHHHC-----GS---TTSEEEE--S----CHHHHHHHHHHHT-SSGEEEEE
T ss_pred HhHhcCCCEEEEcCCHH------HHHHHHHHhhh-----hc--CCCcEEEEeCCC---CHHHHHHHHHhcC-cccceeec
Confidence 46789999999999964 36666776642 12 122344444332 2333444544443 56777765
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=33.93 E-value=37 Score=30.01 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=42.8
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCc-ccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDI-PEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~-~~i~~~~l~~AD~II~Gs 136 (260)
..+=+++||.+ .|-|. ||-+|...+-. .|+.|.++.+.+.... ...... +... ..+ ...+..+|.+||==
T Consensus 104 ~~~nl~l~G~~G~GKTh-La~Ai~~~l~~-~g~sv~f~~~~el~~~-Lk~~~~----~~~~~~~l-~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTH-LAIAIGNELLK-AGISVLFITAPDLLSK-LKAAFD----EGRLEEKL-LRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHH-HHHHHHHHHHH-cCCeEEEEEHHHHHHH-HHHHHh----cCchHHHH-HHHhhcCCEEEEec
Confidence 45668889886 78887 55555555555 7999999999875221 111000 0011 112 34489999999754
Q ss_pred c
Q 024934 137 P 137 (260)
Q Consensus 137 P 137 (260)
=
T Consensus 176 l 176 (254)
T COG1484 176 I 176 (254)
T ss_pred c
Confidence 3
No 258
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=33.92 E-value=68 Score=22.66 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=29.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
-+||.+|=.|+++-+..++++|++.-+... .++.+++-+
T Consensus 6 YK~IelvGtSp~S~d~Ai~~Ai~RA~~t~~--~l~wfeV~~ 44 (71)
T COG3360 6 YKKIELVGTSPTSIDAAIANAIARAADTLD--NLDWFEVVE 44 (71)
T ss_pred EEEEEEEecCCccHHHHHHHHHHHHHhhhh--cceEEEEEe
Confidence 468889999999999999999988876632 345555544
No 259
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.90 E-value=60 Score=26.07 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=41.9
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHH--HhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHH
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTRE--ALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDS 153 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~--~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~ 153 (260)
+.+.+.+.|.+ .|+++..+-=.....+. ......+ +-.+...+ .+.+..+|.||+..+..... ...++++++.
T Consensus 10 vG~~l~~~L~~-~~~~V~~~~R~~~~~~~~~~~~~~~~--d~~d~~~~-~~al~~~d~vi~~~~~~~~~-~~~~~~~~~a 84 (183)
T PF13460_consen 10 VGRALAKQLLR-RGHEVTALVRSPSKAEDSPGVEIIQG--DLFDPDSV-KAALKGADAVIHAAGPPPKD-VDAAKNIIEA 84 (183)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSGGGHHHCTTEEEEES--CTTCHHHH-HHHHTTSSEEEECCHSTTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCEEEEEecCchhccccccccccee--eehhhhhh-hhhhhhcchhhhhhhhhccc-cccccccccc
Confidence 45555566655 57777766543322221 0000001 11122223 45678999999999877775 5667788887
Q ss_pred hc
Q 024934 154 TG 155 (260)
Q Consensus 154 ~~ 155 (260)
+.
T Consensus 85 ~~ 86 (183)
T PF13460_consen 85 AK 86 (183)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 260
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=33.87 E-value=2.3e+02 Score=24.10 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=42.1
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCc-EEec
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGM-LFVP 201 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm-~vV~ 201 (260)
..++.+.|+|++|-- +++...+..+++++. --|+.++-+++ ..++..+.+.+.++|. .++-
T Consensus 97 L~~~~~~daiFIGGg---~~i~~ile~~~~~l~-------~ggrlV~nait--------lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 97 LPDLPSPDAIFIGGG---GNIEEILEAAWERLK-------PGGRLVANAIT--------LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred hcCCCCCCEEEECCC---CCHHHHHHHHHHHcC-------cCCeEEEEeec--------HHHHHHHHHHHHHcCCceEEE
Confidence 445668999999987 888888888888762 23555544443 2345667777888888 5554
Q ss_pred C
Q 024934 202 I 202 (260)
Q Consensus 202 ~ 202 (260)
.
T Consensus 159 v 159 (187)
T COG2242 159 V 159 (187)
T ss_pred E
Confidence 3
No 261
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=33.73 E-value=93 Score=29.42 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=19.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.++|+||-.+.. ..+++. |.+ .|+++.++.-
T Consensus 192 ~~~I~viD~g~k---~ni~~~----L~~-~G~~v~vvp~ 222 (382)
T CHL00197 192 QLKIIVIDFGVK---YNILRR----LKS-FGCSITVVPA 222 (382)
T ss_pred CCEEEEEECCcH---HHHHHH----HHH-CCCeEEEEcC
Confidence 578999987533 334444 444 5788877753
No 262
>PRK13566 anthranilate synthase; Provisional
Probab=33.59 E-value=2.3e+02 Score=29.14 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=25.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.-+||+||=+- .+++..+++.+ ++ .|+++++++...
T Consensus 525 ~g~~IlvID~~-dsf~~~l~~~L----r~-~G~~v~vv~~~~ 560 (720)
T PRK13566 525 EGKRVLLVDHE-DSFVHTLANYF----RQ-TGAEVTTVRYGF 560 (720)
T ss_pred CCCEEEEEECC-CchHHHHHHHH----HH-CCCEEEEEECCC
Confidence 45789888755 45666666664 44 588999888764
No 263
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=33.49 E-value=2.2e+02 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=28.5
Q ss_pred CCCeEEEEEe-cC---chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFY-SM---YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~-S~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..|||+++.. ++ .|-.+.....+.+.|.+ .|+++.++-...
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~-~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLRE-MGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5789998854 32 24344555677778887 899999987644
No 264
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=33.48 E-value=2.3e+02 Score=22.22 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=28.1
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
...+.++|++||.+..-...--..++.|+..+... ...+.++.++++
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~n 116 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGN 116 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 34578999999998765433333555666655321 124566666665
No 265
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.34 E-value=1.9e+02 Score=26.17 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 71 (285)
T PRK14191 31 RPKLAVILVGKDPASQTYVNMKIKACER-VGMDSDLHTLQEN 71 (285)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4578888877777777888999999988 8999999999875
No 266
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=33.22 E-value=4.6e+02 Score=25.41 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=73.7
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC---CCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHH
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP---PRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~---~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
|...++..+.+ .|.+|.+++................ ...++..++ .+.+..+|.||+..|. ...+...++
T Consensus 10 MG~~mA~nL~~-~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~-v~~l~~~dvIil~v~~-----~~~v~~Vi~ 82 (467)
T TIGR00873 10 MGSNLALNMAD-HGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEF-VQSLERPRKIMLMVKA-----GAPVDAVIN 82 (467)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHH-HhhcCCCCEEEEECCC-----cHHHHHHHH
Confidence 56666666666 7888888887543222222210000 001122222 3345568999988775 234556666
Q ss_pred HhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCCcccccceecCCC
Q 024934 153 STGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDG 231 (260)
Q Consensus 153 ~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~g 231 (260)
.+.. .+ +|+ +++.+++ .....+ ......+...|..+|+.+..-+.. +-..|...+.
T Consensus 83 ~l~~-----~L~~g~---iIID~gn--s~~~~t-~~~~~~l~~~gi~fvdapVsGG~~---------gA~~G~~im~--- 139 (467)
T TIGR00873 83 QLLP-----LLEKGD---IIIDGGN--SHYPDT-ERRYKELKAKGILFVGSGVSGGEE---------GARKGPSIMP--- 139 (467)
T ss_pred HHHh-----hCCCCC---EEEECCC--cCHHHH-HHHHHHHHhcCCEEEcCCCCCCHH---------HHhcCCcCCC---
Confidence 5432 22 344 3444433 122233 334556778899999876651110 0001211111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 024934 232 TREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 232 ~~~p~e~~le~a~~~G~~la~~ 253 (260)
.-+++..+.++.+-+.++..
T Consensus 140 --GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 140 --GGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred --CCCHHHHHHHHHHHHHHhhh
Confidence 24567777777777766654
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.20 E-value=50 Score=30.45 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=42.7
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
..+-+++||.. +|-|. ++.+|+..+-. .|..|..+...+.......... ....+.... .+.+.++|.|||=
T Consensus 182 ~~~~Lll~G~~GtGKTh-La~aIa~~l~~-~g~~V~y~t~~~l~~~l~~~~~---~~~~~~~~~-~~~l~~~DLLIID 253 (329)
T PRK06835 182 NNENLLFYGNTGTGKTF-LSNCIAKELLD-RGKSVIYRTADELIEILREIRF---NNDKELEEV-YDLLINCDLLIID 253 (329)
T ss_pred cCCcEEEECCCCCcHHH-HHHHHHHHHHH-CCCeEEEEEHHHHHHHHHHHHh---ccchhHHHH-HHHhccCCEEEEe
Confidence 34678889875 89988 77777777766 6888888877654211100000 001111111 4678899999974
No 268
>PRK14866 hypothetical protein; Provisional
Probab=33.19 E-value=1.1e+02 Score=29.74 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=19.2
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGV 84 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l 84 (260)
|+++||+....--...+++.+.+-+
T Consensus 1 m~~~iv~S~~DpAS~ni~~~L~~l~ 25 (451)
T PRK14866 1 MMIAIVVSRADPASVHIREHLLELL 25 (451)
T ss_pred CeEEEEEeCCCchhhhHHHHHHHhc
Confidence 4588888777777778888888854
No 269
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=33.16 E-value=72 Score=25.36 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=29.9
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.+++++|.|..-+..|+.+++-+++ .|..+++..+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~-~g~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEE-KGINVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 7888999999999999999999998 899988888765
No 270
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=33.14 E-value=3.3e+02 Score=23.80 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=56.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
.||-+|---.-| |..+.+.+++......++++.++--.-..-+.|.+.. ..+ .-+-.+.|.||+++|--
T Consensus 3 vkig~ik~GniG-ts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaa--------v~~--~~e~~~pDfvi~isPNp 71 (277)
T COG1927 3 VKIGFIKCGNIG-TSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAA--------VTE--MLEEFNPDFVIYISPNP 71 (277)
T ss_pred eEEEEEEecccc-hHHHHHHHHHhhcccCCceEEEeccccccChHHHHHH--------HHH--HHHhcCCCEEEEeCCCC
Confidence 355555533334 5667777777765547999998887766555665421 011 22345789999999965
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-=|..-+..|. -++.|+.+++-+
T Consensus 72 aaPGP~kARE~l~----------~s~~PaiiigDa 96 (277)
T COG1927 72 AAPGPKKAREILS----------DSDVPAIIIGDA 96 (277)
T ss_pred CCCCchHHHHHHh----------hcCCCEEEecCC
Confidence 5433433333333 247888666543
No 271
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.78 E-value=1.8e+02 Score=26.48 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=34.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.....--+...++...+.+++ .|++++++++.+.
T Consensus 38 ~P~Laii~vg~d~aS~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 78 (287)
T PRK14176 38 TPGLATILVGDDPASKMYVRLKHKACER-VGIRAEDQFLPAD 78 (287)
T ss_pred CCeEEEEEECCCcchHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4577788877666778888999999998 8999999999875
No 272
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=32.76 E-value=1.1e+02 Score=29.84 Aligned_cols=40 Identities=3% Similarity=0.076 Sum_probs=26.7
Q ss_pred CCCeEEEEE--ecCchhHHHHH-HHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVF--YSMYGHVEGLA-KRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy--~S~~GnT~~lA-~~i~~~l~~~~G~ev~li~l~ 98 (260)
+++|++||+ .|..|+..++. +.+...++. .|++++++.-.
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~ 152 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETK 152 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 688998877 34455555554 456667877 78888776543
No 273
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=32.35 E-value=2.3e+02 Score=22.99 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=22.2
Q ss_pred hhcCEEEEEcccc--CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 127 VEADGFLFGFPTR--YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 127 ~~AD~II~GsPtY--~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.++|+|++....- +......++.|+.+.. -.+|+++.+.+
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~-------~~~k~i~~ic~ 116 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFA-------EANKPVAAICH 116 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHH-------HcCCEEEEECc
Confidence 4789987765421 1112345677777653 24676655554
No 274
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=32.30 E-value=79 Score=27.84 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.1
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|||++..+. .|-.+..+..+.+.|.+ .|.+++++....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVA-KGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhccc-CCceEEEEEEeC
Confidence 578777654 47778888899999988 899999987654
No 275
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=32.20 E-value=2.1e+02 Score=26.70 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=34.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+..+|.....-.....++...+.+++ .|++.+++++.+.
T Consensus 86 ~P~LaiIlvGddpaS~~Yv~~k~K~a~~-~GI~~~~~~l~~~ 126 (345)
T PLN02897 86 VPGLAVVLVGQQRDSQTYVRNKIKACEE-TGIKSLLAELPED 126 (345)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHh-cCCEEEEEECCCC
Confidence 4567777777666677889999999998 8999999999875
No 276
>PRK00536 speE spermidine synthase; Provisional
Probab=32.17 E-value=2.5e+02 Score=25.06 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=60.9
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcC---CCCCCCCCccccc--Hhh-hhhc
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM---KVPPRDDDIPEIS--AAD-LVEA 129 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~---~~~~~~dd~~~i~--~~~-l~~A 129 (260)
-++.+|||||=|-..|.-+.++++ .. +++++++.+...+.|.... .|.-+++-+..+. .+. -..+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh--------~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~f 140 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY--------DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKY 140 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc--------CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcC
Confidence 346789999876555544555544 12 7899999876665555422 1211222221110 111 2579
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHh
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAH 194 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~ 194 (260)
|.||+-+. .+ +.|+..+.. .| ++-|++++-.+.---.....+.+...+..
T Consensus 141 DVIIvDs~-----~~---~~fy~~~~~-----~L--~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 141 DLIICLQE-----PD---IHKIDGLKR-----ML--KEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred CEEEEcCC-----CC---hHHHHHHHH-----hc--CCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 99999953 11 566665532 23 56667777543211123344566666655
No 277
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=32.08 E-value=1.6e+02 Score=22.78 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=48.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+||.|+-+... ...-+..+.+.++. .|.+++++........ +.....-. .+..+.+. ...++|+||+.....
T Consensus 2 ~~v~ill~~g~--~~~e~~~~~~~~~~-a~~~v~vvs~~~~~v~-s~~g~~i~-~~~~l~~~---~~~~~D~liVpGg~~ 73 (142)
T cd03132 2 RKVGILVADGV--DAAELSALKAALKA-AGANVKVVAPTLGGVV-DSDGKTLE-VDQTYAGA---PSVLFDAVVVPGGAE 73 (142)
T ss_pred CEEEEEEcCCc--CHHHHHHHHHHHHH-CCCEEEEEecCcCcee-cCCCcEEe-cceeecCC---ChhhcCEEEECCCcc
Confidence 57877775432 23334455666666 6889988887542110 00000000 00011111 223689988875322
Q ss_pred CC---CchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 140 YG---CMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 140 ~g---~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.. .....+..|+.+.. -.+|+++.+.+
T Consensus 74 ~~~~~~~~~~l~~~l~~~~-------~~~~~I~aic~ 103 (142)
T cd03132 74 AAFALAPSGRALHFVTEAF-------KHGKPIGAVGE 103 (142)
T ss_pred CHHHHccChHHHHHHHHHH-------hcCCeEEEcCc
Confidence 21 22345666666543 25788665543
No 278
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=31.86 E-value=1.7e+02 Score=26.75 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.......+...++...+.+++ .|++++++++.+.
T Consensus 39 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 79 (299)
T PLN02516 39 VPGLAVVIVGSRKDSQTYVNMKRKACAE-VGIKSFDVDLPEN 79 (299)
T ss_pred CCeEEEEEECCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4578888877777778888999999988 8999999999865
No 279
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.58 E-value=4e+02 Score=24.18 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=34.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|......-+...++...+.+++ .|++++++++.+..
T Consensus 29 ~P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 70 (287)
T PRK14173 29 VPHLRVVRLGEDPASVSYVRLKDRQAKA-LGLRSQVEVLPEST 70 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3567777777666777888999999998 89999999998653
No 280
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=31.56 E-value=1.1e+02 Score=23.43 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=31.2
Q ss_pred CeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 60 LKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 60 ~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|||.|||+-.. -=+-.=|+.|.+.|.+ .+.++..+.+...
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~ 43 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKD 43 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTT
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCC
Confidence 79999997763 2345567889999988 8889998888754
No 281
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=31.53 E-value=83 Score=23.52 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=27.3
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
|++.+++.+.+..|.++.++++.+. -..+|.+|++|..=.
T Consensus 1 ~~~~i~~~l~~~k~~dI~v~dv~~~-------------------------~~~~dy~II~T~~S~ 40 (100)
T PF02410_consen 1 MLEEIVEALEDKKAEDIVVLDVREK-------------------------SSWADYFIIATGRSE 40 (100)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEGCTT-------------------------BSS-SEEEEEEESSH
T ss_pred CHHHHHHHHHHcCCCCeEEEECCCC-------------------------CcccCEEEEEEcCCH
Confidence 4566777776656789999999863 136799999998543
No 282
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=31.36 E-value=1.1e+02 Score=27.92 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++||+|++|... --+-+=++.+.+.|++ .|.++..+++..
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~ 45 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITK 45 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECC
Confidence 679999997753 2334667889999988 899999999875
No 283
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=31.10 E-value=83 Score=27.77 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=35.1
Q ss_pred hhhhhcC-EEEEEccccC--CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcC
Q 024934 124 ADLVEAD-GFLFGFPTRY--GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHG 196 (260)
Q Consensus 124 ~~l~~AD-~II~GsPtY~--g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~g 196 (260)
+++..+| +||||+..|+ +.++..++.=++..-.++. .||..-++.|+|. .+..-.-...|.+.|..+|
T Consensus 40 ~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk----~gk~~~ilvSGg~-~~~~~~Ea~~M~~yLi~~G 110 (239)
T PRK10834 40 QDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYN----SGKVNYLLLSGDN-ALQSYNEPMTMRKDLIAAG 110 (239)
T ss_pred hhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHH----hCCCCEEEEeCCC-CCCCCCHHHHHHHHHHHcC
Confidence 3444444 5588988774 5566666555554433432 3555556666654 2211112244666665554
No 284
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=30.95 E-value=81 Score=26.44 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=29.6
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|+||.+ ..||...+++++.+ .|+++++++- .+++.++|+||++.|
T Consensus 1 ~~~~~~-~~gn~~~l~~~l~~-----~g~~v~v~~~-------------------------~~~l~~~d~lii~G~ 45 (196)
T TIGR01855 1 IVIIDY-GVGNLGSVKRALKR-----VGAEPVVVKD-------------------------SKEAELADKLILPGV 45 (196)
T ss_pred CEEEec-CCcHHHHHHHHHHH-----CCCcEEEEcC-------------------------HHHhccCCEEEECCC
Confidence 345553 36788878777653 4677777662 134568999999775
No 285
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.78 E-value=4e+02 Score=23.95 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=32.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.+||.....--+...++...+.+++ .|++.+++.+.+.
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~-~Gi~~~~~~l~~~ 73 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRR-VGMDSLKVELPQE 73 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence 4578888877666677778888888888 8999999999654
No 286
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.52 E-value=1.1e+02 Score=25.63 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=28.9
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|+||-+ ..||...+++++ +. .|+++++++ + .+++.++|+||+..|
T Consensus 2 i~vid~-g~gn~~~~~~~l----~~-~g~~v~~~~--~-----------------------~~~l~~~d~lilpG~ 46 (199)
T PRK13181 2 IAIIDY-GAGNLRSVANAL----KR-LGVEAVVSS--D-----------------------PEEIAGADKVILPGV 46 (199)
T ss_pred EEEEeC-CCChHHHHHHHH----HH-CCCcEEEEc--C-----------------------hHHhccCCEEEECCC
Confidence 666653 246777777754 34 577777652 1 345678999999664
No 287
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=30.34 E-value=1.5e+02 Score=24.39 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=34.7
Q ss_pred cCCCCeEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 56 EITKLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
+...++|+||-.|.. |. -++.-|.. .|+.|.+.+-... .+ .+.+.+||.||.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~------Pla~lL~~-~~atVt~~h~~T~-------------------~l-~~~~~~ADIVVs 85 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGK------PLAMLLLN-KGATVTICHSKTK-------------------NL-QEITRRADIVVS 85 (160)
T ss_dssp STTT-EEEEE-TTTTTHH------HHHHHHHH-TT-EEEEE-TTSS-------------------SH-HHHHTTSSEEEE
T ss_pred CCCCCEEEEECCcCCCCh------HHHHHHHh-CCCeEEeccCCCC-------------------cc-cceeeeccEEee
Confidence 446789999988863 43 22222333 5788888776542 12 567899999999
Q ss_pred EccccCC
Q 024934 135 GFPTRYG 141 (260)
Q Consensus 135 GsPtY~g 141 (260)
+.+..+.
T Consensus 86 a~G~~~~ 92 (160)
T PF02882_consen 86 AVGKPNL 92 (160)
T ss_dssp -SSSTT-
T ss_pred eeccccc
Confidence 9987543
No 288
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=30.26 E-value=3.3e+02 Score=23.86 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=31.0
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|||++..+. .|-.+..+..+.+.+.+ .|.+++++-....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDR-SKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCc-cceEEEEEEeCCC
Confidence 678877664 67778888889999987 8999998887653
No 289
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=30.24 E-value=1.9e+02 Score=23.61 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-EccccCCCchHHHH
Q 024934 70 YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFPTRYGCMAAQMK 148 (260)
Q Consensus 70 ~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsPtY~g~~~~~mK 148 (260)
.++|..+.++ +++ .|++++++++.... ... .+++.++|+||+ |+|-.... ...++
T Consensus 7 ~~~~~~l~~~----l~~-~~~~~~v~~~~~~~-----------------~~~-~~~~~~~d~iii~Gg~~~~~d-~~~~~ 62 (192)
T PF00117_consen 7 DSFTHSLVRA----LRE-LGIDVEVVRVDSDF-----------------EEP-LEDLDDYDGIIISGGPGSPYD-IEGLI 62 (192)
T ss_dssp HTTHHHHHHH----HHH-TTEEEEEEETTGGH-----------------HHH-HHHTTTSSEEEEECESSSTTS-HHHHH
T ss_pred HHHHHHHHHH----HHH-CCCeEEEEECCCch-----------------hhh-hhhhcCCCEEEECCcCCcccc-ccccc
Confidence 3456655555 444 57889999987520 011 125789999866 45544454 45556
Q ss_pred HHHHHhcccccCCCCCCCcEEEEEee
Q 024934 149 AFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 149 ~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.++..+.. .++| +++.+
T Consensus 63 ~~i~~~~~-------~~~P--ilGIC 79 (192)
T PF00117_consen 63 ELIREARE-------RKIP--ILGIC 79 (192)
T ss_dssp HHHHHHHH-------TTSE--EEEET
T ss_pred cccccccc-------cceE--EEEEe
Confidence 66665431 4566 45555
No 290
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=30.05 E-value=94 Score=28.79 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCC-------CCCc---ccccHhhhhh
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPR-------DDDI---PEISAADLVE 128 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~-------~dd~---~~i~~~~l~~ 128 (260)
|+||.||=.-.+|.. +|.. +.+ .|.+|.++--.+......... ++..+ .+.+ +++ .+-+..
T Consensus 1 ~~kI~ViGaGswGTA--LA~~----la~-ng~~V~lw~r~~~~~~~i~~~-~~N~~yLp~i~lp~~l~at~Dl-~~a~~~ 71 (329)
T COG0240 1 MMKIAVIGAGSWGTA--LAKV----LAR-NGHEVRLWGRDEEIVAEINET-RENPKYLPGILLPPNLKATTDL-AEALDG 71 (329)
T ss_pred CceEEEEcCChHHHH--HHHH----HHh-cCCeeEEEecCHHHHHHHHhc-CcCccccCCccCCcccccccCH-HHHHhc
Confidence 577887654456642 3433 333 467787776543322222222 21110 1111 122 334556
Q ss_pred cCEEEEEccccC-CCchHHHH
Q 024934 129 ADGFLFGFPTRY-GCMAAQMK 148 (260)
Q Consensus 129 AD~II~GsPtY~-g~~~~~mK 148 (260)
||.|+|+.|.++ ..+-.+++
T Consensus 72 ad~iv~avPs~~~r~v~~~l~ 92 (329)
T COG0240 72 ADIIVIAVPSQALREVLRQLK 92 (329)
T ss_pred CCEEEEECChHHHHHHHHHHh
Confidence 999999999875 33444444
No 291
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=29.97 E-value=2.9e+02 Score=23.96 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=24.6
Q ss_pred HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 74 EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 74 ~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+++++. + .|++++++.+.+... ...++.++|+|||..-
T Consensus 13 ~~~~~al~----~-aG~~v~~v~~~~~~~-------------------~~~~l~~~d~liipGG 52 (238)
T cd01740 13 RDMAYAFE----L-AGFEAEDVWHNDLLA-------------------GRKDLDDYDGVVLPGG 52 (238)
T ss_pred HHHHHHHH----H-cCCCEEEEeccCCcc-------------------ccCCHhhCCEEEECCC
Confidence 34555544 4 588888888765210 0234678999988654
No 292
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.79 E-value=1.8e+02 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=34.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+.++|.....--+...++...+.+++ .|++++++++.+.
T Consensus 26 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 66 (287)
T PRK14181 26 APGLAVVLIGNDPASEVYVGMKVKKATD-LGMVSKAHRLPSD 66 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 4578888877777778889999999998 8999999999875
No 293
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=29.51 E-value=65 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=19.8
Q ss_pred CCCeEEEEEecCchhH--HHHHHHHHHHccC
Q 024934 58 TKLKIFIVFYSMYGHV--EGLAKRMKKGVDG 86 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT--~~lA~~i~~~l~~ 86 (260)
.|+|||.|+ +||+ ..||+.+.+.+..
T Consensus 1 ~~~kVLFVC---~gN~cRSpmAE~l~~~~~~ 28 (139)
T COG0394 1 MMMKVLFVC---TGNICRSPMAEALLRHLAP 28 (139)
T ss_pred CCceEEEEc---CCCcccCHHHHHHHHHhcc
Confidence 378999999 5554 3599999988854
No 294
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=29.48 E-value=2.7e+02 Score=21.58 Aligned_cols=46 Identities=9% Similarity=-0.092 Sum_probs=27.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+.++|++||..-.-...-...+..|+..+... ...++++.++++
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pi~vv~n 116 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDH----ADSNIVIMLVGN 116 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEE
Confidence 4567899998886665444445566676665421 123567666555
No 295
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.43 E-value=1.2e+02 Score=30.73 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=20.1
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML 157 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l 157 (260)
..++.+||.|||.||. .++.|++.+...
T Consensus 50 l~~L~~yd~iIFTS~n-------AV~~~~~~l~~~ 77 (656)
T PRK06975 50 LARLSDYALVVFVSPN-------AVDRALARLDAI 77 (656)
T ss_pred HHhCCCCCEEEEECHH-------HHHHHHHHHHhh
Confidence 3567899999999963 466677765433
No 296
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=29.30 E-value=2.4e+02 Score=28.98 Aligned_cols=77 Identities=9% Similarity=-0.011 Sum_probs=51.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
.+|+||. +|+.-..|..+++.|++ .|++++++++.-..|- |...+ .+.+.+++.||..==-+
T Consensus 568 ~dvtIia---~G~mv~~Al~AA~~L~~-~GI~vtVIdlr~ikPL-------------D~e~I-~~~~~k~~~vVTvEE~~ 629 (701)
T PLN02225 568 QDVALLG---YGAMVQNCLHAHSLLSK-LGLNVTVADARFCKPL-------------DIKLV-RDLCQNHKFLITVEEGC 629 (701)
T ss_pred CCEEEEe---ccHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCC-------------CHHHH-HHHHhhcCeEEEEcCCC
Confidence 4566655 56666667677777777 7999999999876441 11112 34456777777665544
Q ss_pred CCCchHHHHHHHHHh
Q 024934 140 YGCMAAQMKAFFDST 154 (260)
Q Consensus 140 ~g~~~~~mK~flD~~ 154 (260)
.|++-+.+-.|+-..
T Consensus 630 ~GG~Gs~Va~~l~~~ 644 (701)
T PLN02225 630 VGGFGSHVAQFIALD 644 (701)
T ss_pred CCchHHHHHHHHHhc
Confidence 588888888877653
No 297
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=29.28 E-value=3.8e+02 Score=23.65 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=17.7
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHh
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
+.+.++|.||++.|.+ .++.+++.+
T Consensus 60 e~~~~aDvVilavpp~------~~~~vl~~l 84 (277)
T PRK06928 60 EIFTKCDHSFICVPPL------AVLPLLKDC 84 (277)
T ss_pred HHHhhCCEEEEecCHH------HHHHHHHHH
Confidence 3467999999999954 355555554
No 298
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=29.04 E-value=4.6e+02 Score=26.68 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=46.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEEEEccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II~GsPt 138 (260)
.+|+||. +|+.-..|..+++.|++ .|++++++++.-..|- |.. . ...+ +....||..==-
T Consensus 545 ~dvtIva---~G~~v~~Al~AA~~L~~-~GI~v~VId~rsikPl-------------D~~-~-i~sl~k~~~~vVt~Ee~ 605 (641)
T PLN02234 545 ERVALLG---YGSAVQRCLEAASMLSE-RGLKITVADARFCKPL-------------DVA-L-IRSLAKSHEVLITVEEG 605 (641)
T ss_pred CCEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEecCCcCCC-------------CHH-H-HHHHHHhCCEEEEECCC
Confidence 4566665 45555556666666766 7999999999865431 111 1 2333 455555543333
Q ss_pred cCCCchHHHHHHHHHh
Q 024934 139 RYGCMAAQMKAFFDST 154 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~ 154 (260)
+.|++.+.+-.++-..
T Consensus 606 ~~GG~Gs~Va~~l~e~ 621 (641)
T PLN02234 606 SIGGFGSHVVQFLALD 621 (641)
T ss_pred CCCcHHHHHHHHHHHc
Confidence 3489999999888764
No 299
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=28.98 E-value=4.1e+02 Score=23.91 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=22.8
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCce
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVE 91 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~e 91 (260)
.-++|.+||.+. +| +.+++.+.+.+++ .|++
T Consensus 135 ~w~~vaii~~~~~~g--~~~~~~l~~~l~~-~g~~ 166 (362)
T cd06367 135 DWHQFSVVTSRDPGY--RDFLDRVETTLEE-SFVG 166 (362)
T ss_pred CCeEEEEEEEcCccc--HHHHHHHHHHHHh-cccc
Confidence 457899999765 45 4577888888877 6766
No 300
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=28.80 E-value=1.1e+02 Score=28.47 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=24.0
Q ss_pred CeEEEEE-ecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCc
Q 024934 60 LKIFIVF-YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT 102 (260)
Q Consensus 60 ~KVlIIy-~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~ 102 (260)
.+++||. +|..+ .++.+.+.|++ .|+++.++++....|
T Consensus 247 ad~~iva~Gs~~~----~a~eA~~~L~~-~Gi~v~vi~~~~l~P 285 (352)
T PRK07119 247 AELVLVAYGTSAR----IAKSAVDMARE-EGIKVGLFRPITLWP 285 (352)
T ss_pred CCEEEEEcCccHH----HHHHHHHHHHH-cCCeEEEEeeceecC
Confidence 4566555 44444 44444555666 688999999876644
No 301
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=28.63 E-value=3e+02 Score=21.78 Aligned_cols=45 Identities=4% Similarity=-0.043 Sum_probs=29.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+..+|++||..-.....--..++.|+..+... ..+.|+.++++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piiiv~n 112 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CGNIPIVLCGN 112 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEE
Confidence 3467899999987776554445567777776532 23677766665
No 302
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=28.60 E-value=3e+02 Score=21.77 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=28.9
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+..+|++||....-.-.--..++.|+..+.. ...+.++++.++++-
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 109 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANK 109 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeC
Confidence 456899999999776543323345566655431 123456777776664
No 303
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=28.57 E-value=2.7e+02 Score=21.23 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=29.5
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++++..-+....-...+..|++.+... ....++|+.++++=
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~---~~~~~~piivv~nK 115 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRV---KDSDDVPMVLVGNK 115 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 4567899999987766544344556666655321 12356787666663
No 304
>PLN00223 ADP-ribosylation factor; Provisional
Probab=28.41 E-value=2.3e+02 Score=23.02 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=25.6
Q ss_pred hhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 125 DLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
-+.++|++||..-.-...--...+.++.++. ....+.+.|+.++++=
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l---~~~~~~~~piilv~NK 127 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANK 127 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHh---cCHhhCCCCEEEEEEC
Confidence 3689999999766443221222233333321 1123467888777764
No 305
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=28.39 E-value=1.6e+02 Score=27.59 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..+++-||.++..| +...+++.+.+-+.+ .|.++.++-+.+.
T Consensus 236 ~a~~~giiv~tk~gQ~r~~~~~~l~k~~~~-~g~~~~li~~~~i 278 (347)
T COG1736 236 DAKSFGIIVSTKGGQRRLEVARELVKLLKE-AGKEVYLIVVDEI 278 (347)
T ss_pred cCCeEEEEEecccccCcHHHHHHHHHHHHH-cCCceEEEEecCC
Confidence 36688899999866 567899999999999 8999999888764
No 306
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=28.21 E-value=1.4e+02 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceE---EEEEcCCC
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEG---LLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev---~li~l~~~ 100 (260)
.+.|++||-.-- +--|+.|.+-..+.+.. .|.+. ++++++..
T Consensus 11 ~~~riaIV~arfn~~I~d~ll~gA~~~l~~-~G~~~~~i~vv~VPGa 56 (152)
T COG0054 11 KGLRIAIVVARFNDDITDALLEGAVDALKR-HGADVDNIDVVRVPGA 56 (152)
T ss_pred CCceEEEEEeehhHHHHHHHHHHHHHHHHH-cCCCcccceEEEeCCc
Confidence 467898887553 34578888888888877 67655 48888765
No 307
>PHA03075 glutaredoxin-like protein; Provisional
Probab=28.17 E-value=1e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=18.9
Q ss_pred CCeEEEEEecCc-hhHHHHHHHHHHHccC
Q 024934 59 KLKIFIVFYSMY-GHVEGLAKRMKKGVDG 86 (260)
Q Consensus 59 m~KVlIIy~S~~-GnT~~lA~~i~~~l~~ 86 (260)
|+++||++|-++ |-++ .+..+.+.+++
T Consensus 1 mK~tLILfGKP~C~vCe-~~s~~l~~led 28 (123)
T PHA03075 1 MKKTLILFGKPLCSVCE-SISEALKELED 28 (123)
T ss_pred CCceEEEeCCcccHHHH-HHHHHHHHhhc
Confidence 789999999986 4444 44444467765
No 308
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=28.06 E-value=4.2e+02 Score=23.33 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=53.5
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhc
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
|...++..+.+ .|.+|.+++.......... ...+.. .... .+.+.++|.||+..|. ...++..+....
T Consensus 10 mG~~iA~~l~~-~G~~V~~~dr~~~~~~~~~-~~g~~~----~~~~-~~~~~~aDivi~~vp~-----~~~~~~v~~~~~ 77 (291)
T TIGR01505 10 MGSPMSINLAK-AGYQLHVTTIGPEVADELL-AAGAVT----AETA-RQVTEQADVIFTMVPD-----SPQVEEVAFGEN 77 (291)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHH-HCCCcc----cCCH-HHHHhcCCEEEEecCC-----HHHHHHHHcCcc
Confidence 44555555555 6888888876532111111 111110 1112 3557899999999996 345555431100
Q ss_pred ccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 156 MLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 156 ~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
.+ ...+ ++..+++..++ .. ..+...+.+.+...|+.++..+.
T Consensus 78 ~~--~~~~--~~g~iivd~st--~~-~~~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 78 GI--IEGA--KPGKTLVDMSS--IS-PIESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred hH--hhcC--CCCCEEEECCC--CC-HHHHHHHHHHHHHcCCCEEecCC
Confidence 00 0012 22223333322 11 22335677777777888877543
No 309
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.03 E-value=1e+02 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=29.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
|||.|++......+..+++.|.+-+++ .|+++.+..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~ 36 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDS 36 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 688888766667788899999999988 888887764
No 310
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.88 E-value=1.1e+02 Score=27.95 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=29.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
|+||.||+-...-....+++.+.+-+.+ .|+++.+..
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 37 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRAS 37 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 6789998866555677889999998888 888887654
No 311
>PLN02204 diacylglycerol kinase
Probab=27.82 E-value=1.6e+02 Score=29.67 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=46.1
Q ss_pred CCCCeEEEEE--ecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccc----cHhhhhhcC
Q 024934 57 ITKLKIFIVF--YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEI----SAADLVEAD 130 (260)
Q Consensus 57 ~~m~KVlIIy--~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i----~~~~l~~AD 130 (260)
.++++++||+ .|..|+..+..+.++..+.. .+++++++.-.... +..++ ...++..+|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~ag---------------hA~d~~~~~~~~~l~~~D 220 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAG---------------HAFDVMASISNKELKSYD 220 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcc---------------hHHHHHHHHhhhhccCCC
Confidence 4678888776 33456667777788888877 78888776654321 11111 011356789
Q ss_pred EEEEEccccCCCchHHHHHHH
Q 024934 131 GFLFGFPTRYGCMAAQMKAFF 151 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~fl 151 (260)
+||...- -|.+...+..++
T Consensus 221 ~VVaVGG--DGt~nEVlNGL~ 239 (601)
T PLN02204 221 GVIAVGG--DGFFNEILNGYL 239 (601)
T ss_pred EEEEEcC--ccHHHHHHHHHh
Confidence 9987643 233555555554
No 312
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=27.70 E-value=5.5e+02 Score=24.59 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcH------HHhhcCCCCCC----CCCcccccHhhhh
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTR------EALDHMKVPPR----DDDIPEISAADLV 127 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~------~~~~~~~~~~~----~dd~~~i~~~~l~ 127 (260)
..+|+++.|.. -|.|-.+|+..+.-+....--.|-++.+..+.+- -.-..+.++.. ..++.+. ...+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a-i~~l~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA-IEALR 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH-HHHhh
Confidence 48888888886 4888878877777661102235556665544331 11122334421 1233333 56789
Q ss_pred hcCEEEEEccc---cCCCchHHHHHHHHHh
Q 024934 128 EADGFLFGFPT---RYGCMAAQMKAFFDST 154 (260)
Q Consensus 128 ~AD~II~GsPt---Y~g~~~~~mK~flD~~ 154 (260)
++|.|++-|-= |......+|+.|++..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 99999997754 4455677888888854
No 313
>PRK08818 prephenate dehydrogenase; Provisional
Probab=27.65 E-value=1.1e+02 Score=28.83 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.1
Q ss_pred HhhhhhcCEEEEEcccc
Q 024934 123 AADLVEADGFLFGFPTR 139 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY 139 (260)
.+.+.+||.|||++|+.
T Consensus 46 ~~~v~~aDlVilavPv~ 62 (370)
T PRK08818 46 ATLLQRADVLIFSAPIR 62 (370)
T ss_pred HHHhcCCCEEEEeCCHH
Confidence 34578999999999975
No 314
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=27.57 E-value=2.8e+02 Score=21.23 Aligned_cols=39 Identities=21% Similarity=0.003 Sum_probs=21.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCC
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGT 176 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~ 176 (260)
+-+.++|.||--| .|..+...+..+.. .|++ .+++|+|+
T Consensus 63 ~~~~~~DVvIDfT------~p~~~~~~~~~~~~-------~g~~-~ViGTTG~ 101 (124)
T PF01113_consen 63 ELLEEADVVIDFT------NPDAVYDNLEYALK-------HGVP-LVIGTTGF 101 (124)
T ss_dssp HHTTH-SEEEEES-------HHHHHHHHHHHHH-------HT-E-EEEE-SSS
T ss_pred HhcccCCEEEEcC------ChHHhHHHHHHHHh-------CCCC-EEEECCCC
Confidence 3456799888666 45556666665421 2455 47777776
No 315
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=27.32 E-value=2.9e+02 Score=22.38 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=28.4
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.....--...+.+++.+.. ...+.++|+.++++=
T Consensus 80 ~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK 127 (184)
T smart00178 80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNK 127 (184)
T ss_pred HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeC
Confidence 346799999998655432222334555555421 124578888777763
No 316
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=27.19 E-value=1.7e+02 Score=26.78 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCeEEEEEecCch-hHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
.+++-||.++..| +...+++.+.+-+++ .|-+..++-+.+..
T Consensus 212 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~in 254 (308)
T TIGR03682 212 AKKFGILVSTKKGQRRPELAEELKKLLEE-LGKEALLILLDNIS 254 (308)
T ss_pred CCeEEEEEEccCcCCCHHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence 4678888888755 467799999999998 89999999998753
No 317
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=27.17 E-value=2.3e+02 Score=21.87 Aligned_cols=46 Identities=4% Similarity=-0.001 Sum_probs=30.5
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+.++|++||..-.-.......++.|+..+... ..+.++.++++-
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK 116 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTA-----SKHMPGVLVGNK 116 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEC
Confidence 4567899999998876544445667777765421 145777666664
No 318
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.05 E-value=1.4e+02 Score=22.07 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=25.4
Q ss_pred EEEE-ecCchh--HHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 63 FIVF-YSMYGH--VEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 63 lIIy-~S~~Gn--T~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++|| .|..|+ |.+=-+.+..-|.+ .+++.+.++|..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~-k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEA-KKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHH-CCCceEEEecCC
Confidence 4555 456776 34555667777777 899999999975
No 319
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=27.05 E-value=3.5e+02 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 70 YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 70 ~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.+|+..+++++ ++ .|++++++....
T Consensus 8 ~~~~~~l~~~l----~~-~g~~~~~~~~~~ 32 (188)
T TIGR00888 8 SQYTQLIARRL----RE-LGVYSELVPNTT 32 (188)
T ss_pred chHHHHHHHHH----HH-cCCEEEEEeCCC
Confidence 46777777765 34 577888877643
No 320
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.98 E-value=2.7e+02 Score=25.62 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=27.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.-+|+.|||-|.+| ...++.+.+.+++ .|.++..+.+.
T Consensus 117 ~wk~vailYdsd~g--l~~lq~l~~~~~~-~g~~V~~~~~~ 154 (370)
T cd06389 117 QWDKFAYLYDSDRG--LSTLQAVLDSAAE-KKWQVTAINVG 154 (370)
T ss_pred CCcEEEEEecCchH--HHHHHHHHHhhcc-CCceEEEEEee
Confidence 45799999976554 5577888888887 78777655543
No 321
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=26.90 E-value=3.7e+02 Score=23.60 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=23.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGL 93 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~ 93 (260)
-++|.+||. .+...+...+.+.+.+++ .|+++.
T Consensus 134 ~~~v~~l~~-~~~~g~~~~~~~~~~~~~-~G~~v~ 166 (336)
T cd06360 134 YKKVVTVAW-DYAFGYEVVEGFKEAFTE-AGGKIV 166 (336)
T ss_pred CCeEEEEec-cchhhHHHHHHHHHHHHH-cCCEEE
Confidence 567888874 334556677788888887 787764
No 322
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.89 E-value=4.8e+02 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=33.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL 101 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~ 101 (260)
..+.++|.......+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDR-VGIYSITHEMPSTI 72 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 4567777776666777888888999988 89999999998753
No 323
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=26.89 E-value=4.4e+02 Score=23.18 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC-CCCCCcccccHhhhhhcCEEEEEccccCCCchHHHH
Q 024934 70 YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP-PRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMK 148 (260)
Q Consensus 70 ~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~-~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK 148 (260)
.|. +.+++.+.+.+. .++++.++.-. |.......... ...-+...+ ...+.++|.||+|.--.+....+ .+
T Consensus 12 ~GD-e~~l~~~l~~l~--~~~~~~v~s~~---p~~~~~~~~v~~~~r~~~~~~-~~~l~~~D~vI~gGG~l~~d~~~-~~ 83 (298)
T TIGR03609 12 LGD-EALLAALLRELP--PGVEPTVLSND---PAETAKLYGVEAVNRRSLLAV-LRALRRADVVIWGGGSLLQDVTS-FR 83 (298)
T ss_pred cch-HHHHHHHHHhcC--CCCeEEEecCC---hHHHHhhcCceEEccCCHHHH-HHHHHHCCEEEECCcccccCCcc-cc
Confidence 344 678888888885 35665555322 11111111000 000112233 56789999999998877765432 22
Q ss_pred HHHHHhcccccCCCCCCCcEEEEEeeC
Q 024934 149 AFFDSTGMLWKEGKLVGKPAGFFVSTG 175 (260)
Q Consensus 149 ~flD~~~~l~~~~~l~gK~~~if~s~G 175 (260)
.++-.+..... -.+.||++.+++.+-
T Consensus 84 ~~~~~~~~~~~-a~~~~k~~~~~g~gi 109 (298)
T TIGR03609 84 SLLYYLGLMRL-ARLFGKPVILWGQGI 109 (298)
T ss_pred cHHHHHHHHHH-HHHcCCCEEEEeccc
Confidence 22211110000 124688887777653
No 324
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=26.88 E-value=5.8e+02 Score=24.54 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=61.5
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc--
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR-- 139 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY-- 139 (260)
+|||+-+..- +.-=..+.+.|++ .|.+++...+.+. ++... .-.-..||.|||=.|.-
T Consensus 1 ~LVllD~~~~--~~~yS~Ff~~L~~-rg~~l~~~~~~d~----------------~l~L~-~~ge~~YD~LIif~~~~k~ 60 (423)
T PF03345_consen 1 TLVLLDNRAI--KETYSTFFNSLKE-RGYELTFKSADDE----------------SLSLF-KYGERLYDHLIIFPPSVKE 60 (423)
T ss_pred CEEEecCccc--hhhHHHHHHHHHh-CCCEEEEecCCCC----------------Ccchh-hCChhhcceEEEeCCcccc
Confidence 4788877532 1124566777888 8999988777652 11111 22345799998888753
Q ss_pred C-CCc-hHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 140 Y-GCM-AAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 140 ~-g~~-~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
+ +++ +..+..|+| .|.-+.++++.. + . -..+..++.++|+.+-+.++
T Consensus 61 ~g~~ls~~~ll~Fvd-----------~GgNilv~~s~~---~-~---~~~ir~~~~E~gi~~~~~~~ 109 (423)
T PF03345_consen 61 FGGSLSPKTLLDFVD-----------NGGNILVAGSSD---A-I---PDSIREFANELGIEFDPKGS 109 (423)
T ss_pred cCCCCCHHHHHHHHh-----------CCCcEEEEeCCC---c-C---cHHHHHHHHHCCeEECCCCC
Confidence 2 344 445566666 355554444432 1 1 13456677788888765543
No 325
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=26.81 E-value=4.7e+02 Score=24.16 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCc-HHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT-REALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~-~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..++|.||= +|+ |...++..|.+ .|+++.+..-..... ..+.... .. ...+ .+-+.+||.|++..
T Consensus 16 ~gktIgIIG---~Gs---mG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~G-~~-----~~s~-~eaa~~ADVVvLaV 81 (330)
T PRK05479 16 KGKKVAIIG---YGS---QGHAHALNLRD-SGVDVVVGLREGSKSWKKAEADG-FE-----VLTV-AEAAKWADVIMILL 81 (330)
T ss_pred CCCEEEEEe---eHH---HHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHCC-Ce-----eCCH-HHHHhcCCEEEEcC
Confidence 456787772 343 66666777776 788876654432211 1111111 00 0112 34578899999999
Q ss_pred cc
Q 024934 137 PT 138 (260)
Q Consensus 137 Pt 138 (260)
|.
T Consensus 82 Pd 83 (330)
T PRK05479 82 PD 83 (330)
T ss_pred CH
Confidence 93
No 326
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.80 E-value=89 Score=27.46 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=30.9
Q ss_pred eEEEEE--ecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVF--YSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy--~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|||+|+ +++ .|-.+.++..+.+.+.+ .|++++++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAA-RGIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHh-CCCceEEEecCCC
Confidence 677775 455 67778888999999988 7999999987654
No 327
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.73 E-value=1.3e+02 Score=26.42 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..++|+++.+|+--..++-.-.+++.++. .++.++++...+.
T Consensus 106 ~~~riVvFvGSpi~e~ekeLv~~akrlkk-~~Vaidii~FGE~ 147 (259)
T KOG2884|consen 106 QKQRIVVFVGSPIEESEKELVKLAKRLKK-NKVAIDIINFGEA 147 (259)
T ss_pred cceEEEEEecCcchhhHHHHHHHHHHHHh-cCeeEEEEEeccc
Confidence 46889999999977666666666777777 7888999988874
No 328
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=26.43 E-value=6e+02 Score=26.27 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=35.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
..+|||+|= ...+-|..+++.+.+-.. .++++++++..... .++ .+.+..+|+|||+
T Consensus 4 ~~~~iL~ID-~~DSft~nl~~~l~~~~g--~~~~v~vv~~d~~~-----------------~~~-~~~l~~~D~VVIs 60 (742)
T TIGR01823 4 QRLHVLFID-SYDSFTYNVVRLLEQQTD--ISVHVTTVHSDTFQ-----------------DQL-LELLPLFDAIVVG 60 (742)
T ss_pred CCceEEEEe-CCcchHHHHHHHHHHhcC--CCcEEEEEeCCCCc-----------------hhh-hhhhcCCCEEEEC
Confidence 467888875 234567888888777643 24566766654320 111 3456789999993
No 329
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=26.33 E-value=1.3e+02 Score=24.78 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=42.8
Q ss_pred CCeEEEEEec-CchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYS-MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S-~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|++|+-|.+. ..|.|- +.+.|...+.+ .|..|-.+.-.-..... -....|.+. -.=..|+-+++.++
T Consensus 1 m~~Il~ivG~k~SGKTT-Lie~lv~~L~~-~G~rVa~iKH~hh~~~~------D~~GkDs~r----~~~aGa~~~v~~s~ 68 (161)
T COG1763 1 MMKILGIVGYKNSGKTT-LIEKLVRKLKA-RGYRVATVKHAHHDFDL------DKPGKDTYR----HRKAGADQVVVASD 68 (161)
T ss_pred CCcEEEEEecCCCChhh-HHHHHHHHHHh-CCcEEEEEEecCCCCCC------CCCCCccch----hhccccceEEEecC
Confidence 7889866654 578876 66777777877 78888776654321100 000112221 11146777888888
Q ss_pred ccCCCc
Q 024934 138 TRYGCM 143 (260)
Q Consensus 138 tY~g~~ 143 (260)
..+.-+
T Consensus 69 ~~~~~~ 74 (161)
T COG1763 69 HRTALM 74 (161)
T ss_pred CEEEEE
Confidence 776444
No 330
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=26.22 E-value=1.6e+02 Score=22.59 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceE-EEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEG-LLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev-~li~l~ 98 (260)
...|+-.|+.|..|+..-+-+.|.+..++ .|+.. +++...
T Consensus 47 ~lq~iGtVSvs~~gsp~d~~~~La~KAda-~GA~yYrIi~~~ 87 (104)
T PRK14864 47 GLQKMGTVSALVRGSPDDAEREIQAKANA-AGADYYVIVMVD 87 (104)
T ss_pred CCceeeEEEEecCCCHHHHHHHHHHHHHH-cCCCEEEEEEcc
Confidence 46678788888778888899999999988 78754 555553
No 331
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=26.08 E-value=6.1e+02 Score=24.59 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=70.6
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCC-C--C-CCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHH
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKV-P--P-RDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFF 151 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~-~--~-~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~fl 151 (260)
|-..++..|.+ .|.+|.+++..........+.... . . ..+++.++ .+.+.++|.||+.-|- +..++.++
T Consensus 12 MG~~lA~nL~~-~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~-v~~l~~~d~Iil~v~~-----~~~v~~vi 84 (470)
T PTZ00142 12 MGQNLALNIAS-RGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL-VNSLKKPRKVILLIKA-----GEAVDETI 84 (470)
T ss_pred HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHH-HhcCCCCCEEEEEeCC-----hHHHHHHH
Confidence 33344444445 688899998765432222211000 0 0 01222222 2333358977776442 34566777
Q ss_pred HHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCCcccccceecCC
Q 024934 152 DSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGD 230 (260)
Q Consensus 152 D~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 230 (260)
+.+.. .+ .|+. ++.+|. +.-..+ ......+...|..+++.+..-+.. +--.|...+.
T Consensus 85 ~~l~~-----~L~~g~i---IID~gn--~~~~dt-~~r~~~l~~~Gi~fldapVSGG~~---------gA~~G~~lm~-- 142 (470)
T PTZ00142 85 DNLLP-----LLEKGDI---IIDGGN--EWYLNT-ERRIKRCEEKGILYLGMGVSGGEE---------GARYGPSLMP-- 142 (470)
T ss_pred HHHHh-----hCCCCCE---EEECCC--CCHHHH-HHHHHHHHHcCCeEEcCCCCCCHH---------HHhcCCEEEE--
Confidence 66532 23 3443 344433 222333 445677788899999877651110 0001221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 024934 231 GTREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 231 g~~~p~e~~le~a~~~G~~la~~ 253 (260)
.-+++..++++.+-+.|+..
T Consensus 143 ---GG~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 143 ---GGNKEAYDHVKDILEKCSAK 162 (470)
T ss_pred ---eCCHHHHHHHHHHHHHHhhh
Confidence 13567777777776666643
No 332
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=26.07 E-value=55 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=18.3
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcc
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGM 156 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~ 156 (260)
+-+.++|.||++.|.+. ++.+++++..
T Consensus 65 ~a~~~ad~IiiavPs~~------~~~~~~~l~~ 91 (157)
T PF01210_consen 65 EALEDADIIIIAVPSQA------HREVLEQLAP 91 (157)
T ss_dssp HHHTT-SEEEE-S-GGG------HHHHHHHHTT
T ss_pred HHhCcccEEEecccHHH------HHHHHHHHhh
Confidence 45789999999999876 4677777753
No 333
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=26.02 E-value=1.8e+02 Score=27.26 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=46.2
Q ss_pred CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCc
Q 024934 88 DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKP 167 (260)
Q Consensus 88 ~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~ 167 (260)
.+.++-+|+=.|+.|..--..+.|+...-++... . +-=+..+-+..|||++++.-++=+..+. -+.|-.
T Consensus 214 ~~wdCfIFHDVDllPenDrNlY~C~~~PRH~sva-~----dk~gy~LPY~~~FGGVsalt~~qf~kIN------GFsN~f 282 (372)
T KOG3916|consen 214 YGWDCFIFHDVDLLPENDRNLYGCPEQPRHMSVA-L----DKFGYRLPYKEYFGGVSALTKEQFRKIN------GFSNAF 282 (372)
T ss_pred cCCCEEEEecccccccCCCCccCCCCCCcchhhh-h----hhccccccchhhhCchhhccHHHHHHhc------CCCchh
Confidence 3444444443344444333444555443343332 2 2234566667777887777665444432 122222
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 168 AGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 168 ~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
-|| ||.+ ..|.+-+...||.+--
T Consensus 283 ------WGW--GGED---DDl~nRv~~ag~~IsR 305 (372)
T KOG3916|consen 283 ------WGW--GGED---DDLWNRVQLAGMKISR 305 (372)
T ss_pred ------ccc--CCcc---hHHHHHHHhcCceeec
Confidence 144 3433 3566777788888754
No 334
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=25.97 E-value=1.4e+02 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=25.8
Q ss_pred EEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 65 VFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 65 Iy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+|++-=++.+.+...+.+.+++ .|.+++++++.+
T Consensus 5 ~~a~~C~~C~~~~~~~~~~~~e-~~~~~~~~~v~~ 38 (76)
T TIGR00412 5 IYGTGCANCQMTEKNVKKAVEE-LGIDAEFEKVTD 38 (76)
T ss_pred EECCCCcCHHHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 3554458889888888888877 677888888864
No 335
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=25.90 E-value=2.3e+02 Score=24.82 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=38.0
Q ss_pred hhh-hhcCEEEEEccccCCC--chHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCC-CC----hHHHHHHHHHHHHhc
Q 024934 124 ADL-VEADGFLFGFPTRYGC--MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQG-GG----QETTAWTAITQLAHH 195 (260)
Q Consensus 124 ~~l-~~AD~II~GsPtY~g~--~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~-Gg----~e~~l~~l~~~l~~~ 195 (260)
+.| .++|++|++.|.--.+ --..+..|++ +|-++.++....... .+ .......+..+|.++
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~yl~-----------~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~ 260 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLSEEELYALDQYLM-----------NGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEY 260 (271)
T ss_pred cccCCCCCEEEEECCCCCCCHHHHHHHHHHHH-----------cCCeEEEEECCcccccccccccccccccCHHHHHHHc
Confidence 345 7999999999987333 2334455555 455555555543211 00 000123567788888
Q ss_pred CcEEec
Q 024934 196 GMLFVP 201 (260)
Q Consensus 196 gm~vV~ 201 (260)
|+.+-+
T Consensus 261 Gi~~~~ 266 (271)
T PF09822_consen 261 GIRINP 266 (271)
T ss_pred CCEeCC
Confidence 887654
No 336
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=25.78 E-value=4.3e+02 Score=23.97 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCC--ceEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDG--VEGLLYRV 97 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G--~ev~li~l 97 (260)
.-+||.|||.+.+|. ..++.+.+.+++ .| +++....+
T Consensus 125 ~wk~vaii~~~~~~~--~~~~~~~~~~~~-~g~~i~v~~~~~ 163 (382)
T cd06380 125 GWRKVVYLYDSDRGL--LRLQQLLDYLRE-KDNKWQVTARRV 163 (382)
T ss_pred CCeEEEEEECCCcch--HHHHHHHHHHhc-cCCceEEEEEEe
Confidence 478999999776653 234446677766 66 56655443
No 337
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.55 E-value=5.3e+02 Score=24.14 Aligned_cols=120 Identities=13% Similarity=0.007 Sum_probs=64.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC--CCCCcccccHhhhh---hcCEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP--RDDDIPEISAADLV---EADGFL 133 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~--~~dd~~~i~~~~l~---~AD~II 133 (260)
|...-+||+ ..+++.+.|.+.++. . +.+++-|-.+ |.. ..||+..+ .+++. ....|.
T Consensus 61 l~E~d~VfG----g~~~L~~~i~~~~~~-~--~P~~i~v~~t----------C~~~~iGdDi~~v-~~~~~~~~~~~vi~ 122 (410)
T cd01968 61 LSEKDVIFG----GEKKLYKAILEIIER-Y--HPKAVFVYST----------CVVALIGDDIDAV-CKTASEKFGIPVIP 122 (410)
T ss_pred CCccceeec----cHHHHHHHHHHHHHh-C--CCCEEEEECC----------CchhhhccCHHHH-HHHHHHhhCCCEEE
Confidence 444555664 467788888888765 2 2334444332 221 23555444 33332 567888
Q ss_pred EEccccCCCchHHHHHHHHHhcccccC----CCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 134 FGFPTRYGCMAAQMKAFFDSTGMLWKE----GKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 134 ~GsPtY~g~~~~~mK~flD~~~~l~~~----~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
+-+|-|.++...-....++.+...+.. ..-..+.+-+++..-+ .+ .+..+.+.|...|+.++.
T Consensus 123 v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-~~----d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 123 VHSPGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-AG----ELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred EECCCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-cc----cHHHHHHHHHHcCCeEEE
Confidence 889999887544444444433322211 1111345656664433 22 235677788888887663
No 338
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=25.53 E-value=3.2e+02 Score=21.19 Aligned_cols=46 Identities=7% Similarity=-0.013 Sum_probs=27.6
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+.++|++||..-.-...--..+..|+..+... ...+.+..++++
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~----~~~~~~~iiv~n 115 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGN 115 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 4467899999997665433334455666655321 124567666655
No 339
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=25.50 E-value=2.3e+02 Score=26.15 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=23.2
Q ss_pred ccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 55 REITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 55 ~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
+.+.++||+||-++. +...+...+.+ .|.++.+++....
T Consensus 8 ~~~~~~~ilIiG~g~------~~~~~~~a~~~-~G~~v~~~~~~~~ 46 (395)
T PRK09288 8 LSPSATRVMLLGSGE------LGKEVAIEAQR-LGVEVIAVDRYAN 46 (395)
T ss_pred CCCCCCEEEEECCCH------HHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 355677888874332 22333334555 6888888876543
No 340
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.46 E-value=3.4e+02 Score=22.56 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCC----CCceEEEEEcCCCCcHHHhhcCCCC--C--CCCCcccccHhhhhhc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGV----DGVEGLLYRVPETLTREALDHMKVP--P--RDDDIPEISAADLVEA 129 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~----~G~ev~li~l~~~~~~~~~~~~~~~--~--~~dd~~~i~~~~l~~A 129 (260)
-|-|++||--|.-|.|..+-+++-+.+... -|++..+-.+.+. |.- ..-+ . ..+-+..++......|
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~----~kR-iklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS----DKR-IKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec----ccE-EEEEEEecccchhhhHHHHHHhhcc
Confidence 388999999999999998888877776541 2444333222221 100 0000 0 0112334445667899
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
+++|+.+-+-+-+--..++.|.-.+... .|.+-++.++++
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgn 134 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGN 134 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheee----eccCceEEEEec
Confidence 9999999988887777888888776532 456677666554
No 341
>PRK06893 DNA replication initiation factor; Validated
Probab=25.42 E-value=88 Score=26.88 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
....+++||.+ .|.|. ++.+++..+.. .+..+.++.+.
T Consensus 38 ~~~~l~l~G~~G~GKTh-L~~ai~~~~~~-~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSH-LLKAVSNHYLL-NQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEeeHH
Confidence 34567888776 78887 77777777655 56677777764
No 342
>PLN02335 anthranilate synthase
Probab=25.28 E-value=2.9e+02 Score=23.75 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
..|||||- -..+-|..+++++.+ .|+++++++..
T Consensus 18 ~~~ilviD-~~dsft~~i~~~L~~-----~g~~~~v~~~~ 51 (222)
T PLN02335 18 NGPIIVID-NYDSFTYNLCQYMGE-----LGCHFEVYRND 51 (222)
T ss_pred cCcEEEEE-CCCCHHHHHHHHHHH-----CCCcEEEEECC
Confidence 56898884 234556667777544 47788888754
No 343
>PRK10307 putative glycosyl transferase; Provisional
Probab=25.23 E-value=91 Score=28.80 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=28.2
Q ss_pred CeEEEEE--ecC-chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVF--YSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy--~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|||++|. +.+ .|.+......+++.|.+ .|++|+++-..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~-~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAA-RGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHH-CCCeEEEEecC
Confidence 6899987 344 35555666788888888 89999998754
No 344
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=25.16 E-value=3.4e+02 Score=25.18 Aligned_cols=35 Identities=3% Similarity=-0.247 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLL 94 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~l 94 (260)
..+||.+||.+ +.....+++.+.+.+++ .|+++..
T Consensus 175 ~~k~vaii~~~-~~~g~~~~~~~~~~l~~-~gi~i~~ 209 (410)
T cd06363 175 GWNWVAFLGSD-DEYGRDGLQLFSELIAN-TGICIAY 209 (410)
T ss_pred CCcEEEEEEeC-ChhHHHHHHHHHHHHHH-CCeEEEE
Confidence 35678888754 33335677888888877 7776643
No 345
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.10 E-value=4.3e+02 Score=22.78 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=25.0
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEE
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLY 95 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li 95 (260)
||.+|..+. +.....+.+.+.+.+++ .|.++.++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~ 35 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAK-LGIEVVAT 35 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHH-cCCEEEEe
Confidence 677777654 34566788999999988 88877643
No 346
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=25.02 E-value=2.3e+02 Score=24.90 Aligned_cols=63 Identities=22% Similarity=0.135 Sum_probs=38.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCc-eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV-EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~-ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..||++|=.- .+.-+..++...+.+++ .|+ +++.+++.+.. ..+-+++ .+.|.+||+|+|+--
T Consensus 28 ~~rI~~iptA-S~~~~~~~~~~~~~~~~-lG~~~v~~l~i~~r~-------------~a~~~~~-~~~l~~ad~I~~~GG 91 (250)
T TIGR02069 28 DAIIVIITSA-SEEPREVGERYITIFSR-LGVKEVKILDVRERE-------------DASDENA-IALLSNATGIFFTGG 91 (250)
T ss_pred CceEEEEeCC-CCChHHHHHHHHHHHHH-cCCceeEEEecCChH-------------HccCHHH-HHHHhhCCEEEEeCC
Confidence 4588877532 12334456677777777 787 57888885410 0011223 577999999999753
No 347
>PRK06921 hypothetical protein; Provisional
Probab=24.78 E-value=65 Score=28.63 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=38.3
Q ss_pred CeEEEEEecC-chhHHHHHHHHHHHccCCC-CceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSM-YGHVEGLAKRMKKGVDGVD-GVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~-G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.+-+++||.+ .|-|. ++.+|+..+.+ . |..|..+...+.... ..... +..... .+.+.++|.|||==
T Consensus 117 ~~~l~l~G~~G~GKTh-La~aia~~l~~-~~g~~v~y~~~~~l~~~-l~~~~------~~~~~~-~~~~~~~dlLiIDD 185 (266)
T PRK06921 117 KNSIALLGQPGSGKTH-LLTAAANELMR-KKGVPVLYFPFVEGFGD-LKDDF------DLLEAK-LNRMKKVEVLFIDD 185 (266)
T ss_pred CCeEEEECCCCCcHHH-HHHHHHHHHhh-hcCceEEEEEHHHHHHH-HHHHH------HHHHHH-HHHhcCCCEEEEec
Confidence 4567888875 78887 66677777755 4 777777765442110 00000 011112 35677899988643
No 348
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=24.77 E-value=4.7e+02 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
-+||.|||.+..|.. .+ +.+.+.+.+ .|.++....
T Consensus 127 w~~vaii~~~~~~~~-~l-~~~~~~~~~-~g~~v~~~~ 161 (324)
T cd06368 127 WRKFVYIYDSDEGLL-RL-QELLDALSP-KGIQVTVRR 161 (324)
T ss_pred CCEEEEEECCcHhHH-HH-HHHHHhhcc-CCceEEEEE
Confidence 478999986655543 23 445555666 577765443
No 349
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=24.65 E-value=1.4e+02 Score=25.68 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.|.++-+||++| .|.|+.|.+.+...-. .|..+.++.-.
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp~ 41 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKPA 41 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEecc
Confidence 366888999998 5999999998877764 57788777644
No 350
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=24.65 E-value=3.4e+02 Score=21.16 Aligned_cols=50 Identities=6% Similarity=0.136 Sum_probs=31.7
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+..+|++||..-+-...-...++.|++.+.... .....+.|+.++++=
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilv~nK 117 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIK-GNNIEKIPIMLVGNK 117 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCCEEEEEEC
Confidence 34678999999877766655556777777654321 112356777666653
No 351
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.58 E-value=2.3e+02 Score=24.00 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=30.3
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|.||-|. -||...+.+++.+ .|+++.+++ + .+++.++|+||+--+
T Consensus 2 i~iidyg-~gN~~s~~~al~~-----~g~~~~~v~--~-----------------------~~~l~~~D~lIlPG~ 46 (192)
T PRK13142 2 IVIVDYG-LGNISNVKRAIEH-----LGYEVVVSN--T-----------------------SKIIDQAETIILPGV 46 (192)
T ss_pred EEEEEcC-CccHHHHHHHHHH-----cCCCEEEEe--C-----------------------HHHhccCCEEEECCC
Confidence 5566544 5788888887665 356666643 2 356778999998655
No 352
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=24.56 E-value=2.8e+02 Score=26.07 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=39.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCc--eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE-
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV--EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG- 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~--ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G- 135 (260)
.+||++|.+-.-|- .+.++..+-++. .++ +.+.+++... ...+++-..+.++++|++++|
T Consensus 30 ~~~I~vipGDGIGp--EV~~~a~~vl~a-~~~~i~~~~~~~G~~--------------~~~lp~~~l~~~~~~da~L~Ga 92 (360)
T PLN00123 30 PRAVTLIPGDGIGP--LVTGAVEQVMEA-MHAPVYFERYEVHGD--------------MKKVPEEVLESIRRNKVCLKGG 92 (360)
T ss_pred ceEEEEECCCCccH--HHHHHHHHHHHh-CCCceEEEEEccCCC--------------CccCCHHHHHHHHHCCEEEEcc
Confidence 47899998766553 344444444444 344 4444443321 023444447889999999999
Q ss_pred --ccccCC
Q 024934 136 --FPTRYG 141 (260)
Q Consensus 136 --sPtY~g 141 (260)
+|.|.+
T Consensus 93 vg~p~~~~ 100 (360)
T PLN00123 93 LATPVGGG 100 (360)
T ss_pred ccCCCCcC
Confidence 776544
No 353
>PRK08084 DNA replication initiation factor; Provisional
Probab=24.50 E-value=1.1e+02 Score=26.53 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=26.6
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..++|||.+ .|.|. ++.++...+.. .|..+..+.+.+
T Consensus 46 ~~l~l~Gp~G~GKTh-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSH-LLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCeEEEEEHHH
Confidence 478888775 78887 56666666655 577788877754
No 354
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.47 E-value=3.3e+02 Score=24.23 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLL 94 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~l 94 (260)
..+|+.+||.+.+...+.+++.+.+.+++ .|.++..
T Consensus 135 ~~~~v~~l~~~~~~~g~~~~~~~~~~~~~-~g~~v~~ 170 (344)
T cd06348 135 GIKRVAVFYAQDDAFSVSETEIFQKALRD-QGLNLVT 170 (344)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHHHH-cCCEEEE
Confidence 34688888876555567788999999988 7887754
No 355
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=24.42 E-value=5.6e+02 Score=23.95 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC--CCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE--TLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~--~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
-.||.+|..-++-+ .++.+++.++. .|.++++..-.. ..+-.+++|..-. + +. .++|+++|..
T Consensus 122 ~r~I~li~t~q~~~---~l~~~k~~L~~-~g~~v~i~~~~~r~~~~gqVLGC~~~~--------~--~~-~~~d~~l~vg 186 (347)
T COG1736 122 SRRIGLITTAQHVH---LLEEVKEILEG-RGYEVVIGRGQTRPAYPGQVLGCNFSV--------L--EG-VDADAVLYVG 186 (347)
T ss_pred CceEEEEecccchh---HHHHHHHHhhc-CCeEEEEeCCCCcccCcceeecccccc--------C--Cc-cccceEEEEc
Confidence 44687777555533 45666666776 777666554332 2333455553211 1 11 3467776655
Q ss_pred cccCCCchHH-----------------------HHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHH
Q 024934 137 PTRYGCMAAQ-----------------------MKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLA 193 (260)
Q Consensus 137 PtY~g~~~~~-----------------------mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~ 193 (260)
.=-|...... .+.|+.+ +.......+..|.++++.++-. +-.....+..+.+.+.
T Consensus 187 ~G~FH~lg~~i~~~~~v~~~dP~s~~~~~~~~~~~~~l~~-R~~~i~~a~~a~~~giiv~tk~-gQ~r~~~~~~l~k~~~ 264 (347)
T COG1736 187 SGRFHPLGLAIRTEKPVFAIDPYSGKVREEDPEADRFLRK-RYAAISKALDAKSFGIIVSTKG-GQRRLEVARELVKLLK 264 (347)
T ss_pred CCccChhhcccccCCcEEEEcCCCCceeecchhhhHHHHH-HHHHHHHHhcCCeEEEEEeccc-ccCcHHHHHHHHHHHH
Confidence 4332221111 1122211 0000123456777777776632 1123456678888888
Q ss_pred hcCcEEe
Q 024934 194 HHGMLFV 200 (260)
Q Consensus 194 ~~gm~vV 200 (260)
.+|..++
T Consensus 265 ~~g~~~~ 271 (347)
T COG1736 265 EAGKEVY 271 (347)
T ss_pred HcCCceE
Confidence 8875444
No 356
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=24.28 E-value=1.7e+02 Score=26.74 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCeEEEEEecCch---hHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYG---HVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~G---nT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++||+|+|+-... -+-+=++.+.+.|.+ .+.++..+++..
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~ 45 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITK 45 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECC
Confidence 5799999977532 234567888899988 899999998865
No 357
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=24.21 E-value=90 Score=27.93 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=25.1
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCC
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGT 176 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~ 176 (260)
|.+.......++.|+++.. .+.|+.+.+++|+|+
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 5566667778999999864 567787777777665
No 358
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=24.21 E-value=45 Score=28.07 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHccCCCCceEEEEEcCCCCc-HHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCch
Q 024934 73 VEGLAKRMKKGVDGVDGVEGLLYRVPETLT-REALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMA 144 (260)
Q Consensus 73 T~~lA~~i~~~l~~~~G~ev~li~l~~~~~-~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~ 144 (260)
|=+|..+|++.+.. .|++|.++.=....+ ++......... .++|.+...+.+.++|.+|...-+=-+.+.
T Consensus 28 SG~~G~~lA~~~~~-~Ga~V~li~g~~~~~~p~~~~~i~v~s-a~em~~~~~~~~~~~Di~I~aAAVsDf~p~ 98 (185)
T PF04127_consen 28 SGKMGAALAEEAAR-RGAEVTLIHGPSSLPPPPGVKVIRVES-AEEMLEAVKELLPSADIIIMAAAVSDFRPE 98 (185)
T ss_dssp -SHHHHHHHHHHHH-TT-EEEEEE-TTS----TTEEEEE-SS-HHHHHHHHHHHGGGGSEEEE-SB--SEEES
T ss_pred cCHHHHHHHHHHHH-CCCEEEEEecCccccccccceEEEecc-hhhhhhhhccccCcceeEEEecchhheeeh
Confidence 45788888888888 899999998663322 22222111110 112222213556789999998877655543
No 359
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=24.20 E-value=7.6e+02 Score=25.04 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCC--ceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDG--VEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G--~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.+||.|| | .|+ |...+++.+.+ .| .++..++..+......... .+.. ....+. .+.+.++|.||+..
T Consensus 3 ~~~I~II-G--~G~---mG~ala~~l~~-~G~~~~V~~~d~~~~~~~~a~~~-g~~~--~~~~~~-~~~~~~aDvVilav 71 (735)
T PRK14806 3 FGRVVVI-G--LGL---IGGSFAKALRE-RGLAREVVAVDRRAKSLELAVSL-GVID--RGEEDL-AEAVSGADVIVLAV 71 (735)
T ss_pred CcEEEEE-e--eCH---HHHHHHHHHHh-cCCCCEEEEEECChhHHHHHHHC-CCCC--cccCCH-HHHhcCCCEEEECC
Confidence 3566665 4 343 56666666665 55 3677777654321211111 1110 011112 34477999999999
Q ss_pred cccCCCchHHHHHHHHHhc
Q 024934 137 PTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~ 155 (260)
|.. .+..+++.+.
T Consensus 72 p~~------~~~~vl~~l~ 84 (735)
T PRK14806 72 PVL------AMEKVLADLK 84 (735)
T ss_pred CHH------HHHHHHHHHH
Confidence 963 4556665553
No 360
>PRK08181 transposase; Validated
Probab=24.15 E-value=60 Score=29.04 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=40.4
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..+-++++|.+ +|.|. ++.+|...+-+ .|..|..+.+.+... ...... .+...... .+.+..+|.|||==
T Consensus 105 ~~~nlll~Gp~GtGKTH-La~Aia~~a~~-~g~~v~f~~~~~L~~-~l~~a~----~~~~~~~~-l~~l~~~dLLIIDD 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSH-LAAAIGLALIE-NGWRVLFTRTTDLVQ-KLQVAR----RELQLESA-IAKLDKFDLLILDD 175 (269)
T ss_pred cCceEEEEecCCCcHHH-HHHHHHHHHHH-cCCceeeeeHHHHHH-HHHHHH----hCCcHHHH-HHHHhcCCEEEEec
Confidence 34457778776 79887 66666666655 587887777655311 111100 00112222 46778999999643
No 361
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=24.01 E-value=2.5e+02 Score=19.71 Aligned_cols=40 Identities=8% Similarity=-0.105 Sum_probs=24.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+|.|++.+.=+.++++.+.+.+-..+..|++.+.+++.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 4555544444467776666655544332478888888865
No 362
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=23.85 E-value=2.4e+02 Score=26.14 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=42.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE--cCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR--VPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~--l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
|+||++|-+=.-|- .+..+..+-|+. .++++++.. +.. .+..... +.+++-+.+.++++|++++|.
T Consensus 1 m~~I~vipGDGIGp--Ev~~~~~~vl~~-~~~~~~~~~~~~G~----~~~~~~G-----~~lp~~~l~~~~~~da~l~G~ 68 (330)
T PRK14025 1 MHKICVIEGDGIGK--EVVPAALHVLEA-TGLPFEFVYAEAGD----EVFEKTG-----KALPEETIEAAKEADAVLFGA 68 (330)
T ss_pred CeEEEEECCCcccH--HHHHHHHHHHHh-cCCcEEEEEEcCCH----HHHHHhC-----CCCCHHHHHHHHHCCEEEEcc
Confidence 77899988665552 333334444433 344444443 332 1222111 234444478899999999976
Q ss_pred ccc-CCCchHHHHHHHH
Q 024934 137 PTR-YGCMAAQMKAFFD 152 (260)
Q Consensus 137 PtY-~g~~~~~mK~flD 152 (260)
=.. ..++--.|+.-||
T Consensus 69 vg~p~~~~~~~LR~~ld 85 (330)
T PRK14025 69 AGETAADVIVKLRRILD 85 (330)
T ss_pred CCCCccchHHHHHHHcC
Confidence 322 2333334444444
No 363
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=23.85 E-value=5.6e+02 Score=23.35 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC-CcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET-LTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~-~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.+||.||= +|+ |+.+++.++.. .|+++.+..-... ......... .. .... .+.+.+||.|++..|
T Consensus 3 ~kkIgiIG---~G~---mG~AiA~~L~~-sG~~Viv~~~~~~~~~~~a~~~G-v~-----~~s~-~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 3 GKTVAIIG---YGS---QGHAQALNLRD-SGLNVIVGLRKGGASWKKATEDG-FK-----VGTV-EEAIPQADLIMNLLP 68 (314)
T ss_pred cCEEEEEe---EcH---HHHHHHHHHHH-CCCeEEEEECcChhhHHHHHHCC-CE-----ECCH-HHHHhcCCEEEEeCC
Confidence 36677762 443 67777777776 6776544332221 111111110 00 0112 345789999999999
Q ss_pred cc
Q 024934 138 TR 139 (260)
Q Consensus 138 tY 139 (260)
.+
T Consensus 69 p~ 70 (314)
T TIGR00465 69 DE 70 (314)
T ss_pred cH
Confidence 54
No 364
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.75 E-value=86 Score=27.68 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=30.5
Q ss_pred eEEEEEe----cCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVFY----SMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy~----S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
||+||.. ...|-++..+..+++.|.+ .|++|+++.....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~-~g~~v~v~~~~~~ 43 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVA-RGHEVTVYCRSPY 43 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHh-cCCCEEEEEccCC
Confidence 6788732 2368888999999999998 8999999876543
No 365
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=23.57 E-value=2.2e+02 Score=25.53 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=47.9
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccc-cHhhhhhcCEEEEEccccC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEI-SAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i-~~~~l~~AD~II~GsPtY~ 140 (260)
+++++.+.+-....+++.+++.+++ .|+++++..+.... .. ....-.++|..+++.-...
T Consensus 296 ~~~~~~~~~~~~~~~a~~l~~~l~~-~Gi~v~i~~~~~~~------------------~~~~~~~~~~~d~~~~~~~~~~ 356 (374)
T PF00496_consen 296 LIILYTSDDPIWKAIAEALQEQLKK-IGIKVEIKPVDFND------------------TYDKRLRAGDFDMALSGWSGDY 356 (374)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHH-TTEEEEEEEESHHH------------------HHHHHHHCTSESEEEEEEESSS
T ss_pred ccccccccccchHHHHHHHHHHHhh-cceeEEEEEeChHH------------------HHHHHhhCCCcCEEEEecCCCC
Confidence 5566666666667899999999999 99999988874300 00 0122358888888755555
Q ss_pred CCchHHHHHHHH
Q 024934 141 GCMAAQMKAFFD 152 (260)
Q Consensus 141 g~~~~~mK~flD 152 (260)
......+..|+.
T Consensus 357 ~~~~~~~~~~~~ 368 (374)
T PF00496_consen 357 PDPYSFLYPFFS 368 (374)
T ss_dssp SSTHHHHHHHHT
T ss_pred CCHHHHHHHHcC
Confidence 555555555544
No 366
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.53 E-value=1.6e+02 Score=26.98 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
.++||+||+-...-....+++.+.+-+.+ .|+++.+.+
T Consensus 4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (306)
T PRK03372 4 ASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLD 41 (306)
T ss_pred CccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEee
Confidence 46779999876666667789999998888 888887755
No 367
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=23.49 E-value=3.7e+02 Score=21.17 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=45.2
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC-CCCcHHHhhcCCC-CCCCCCcccccHhh--hhhcCEEEEEc
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP-ETLTREALDHMKV-PPRDDDIPEISAAD--LVEADGFLFGF 136 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~-~~~~~~~~~~~~~-~~~~dd~~~i~~~~--l~~AD~II~Gs 136 (260)
||+|+-+ .|....=+..+.+.++. .|.+++++... .... .....- .... +. ..++ ..++|+|++..
T Consensus 1 ~v~il~~--~gf~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v---~~~~g~~~i~~-d~---~~~~~~~~~~D~lvvpG 70 (165)
T cd03134 1 KVAILAA--DGFEDVELTYPLYRLRE-AGAEVVVAGPEAGGEI---QGKHGYDTVTV-DL---TIADVDADDYDALVIPG 70 (165)
T ss_pred CEEEEcC--CCchHHHHHHHHHHHHH-CCCEEEEEccCCCccc---ccCcCceeecC-CC---ChHHCCHHHCCEEEECC
Confidence 4555552 23333333444455655 78899888866 3211 000000 0000 10 1222 34789987765
Q ss_pred cccCC--CchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 137 PTRYG--CMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 137 PtY~g--~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
--... .....+..|+.+.. -.+|+++.+.+
T Consensus 71 G~~~~~~~~~~~~~~~l~~~~-------~~~~~i~~ic~ 102 (165)
T cd03134 71 GTNPDKLRRDPDAVAFVRAFA-------EAGKPVAAICH 102 (165)
T ss_pred CCChhhhccCHHHHHHHHHHH-------HcCCeEEEEch
Confidence 32211 22356677776653 25677655544
No 368
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.46 E-value=4.6e+02 Score=26.11 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=25.0
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
-.++||+||-++ .+...+...+++ .|.++..++....
T Consensus 20 ~~~k~IgIIGgG------qlg~mla~aA~~-lG~~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGG------QLGRMLCQAASQ-MGIKVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 357788888766 344555555666 7889988887553
No 369
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=23.34 E-value=2.3e+02 Score=25.44 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=20.8
Q ss_pred EEEecC-chhH-HHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 64 IVFYSM-YGHV-EGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 64 IIy~S~-~GnT-~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|.+-|- +|-| +.+++++...+. ++++++...+.
T Consensus 7 i~~VSDstGeTAe~v~~A~l~QF~---~~~~~~~~~p~ 41 (269)
T PRK05339 7 VFLVSDSTGETAETVGRAALSQFP---NVEFEEHRYPF 41 (269)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCC---CCCeeEEEeCC
Confidence 444453 6766 578899999985 45555555443
No 370
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.32 E-value=2.2e+02 Score=25.77 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=0.0
Q ss_pred ccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 55 REITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 55 ~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
++..-++|+||-.|.. +.+-++.-|.. .|+.|.+.+-..... .+.+.+||.||.
T Consensus 154 i~l~Gk~vvVIGrs~~-----VG~pla~lL~~-~gatVtv~~s~t~~l--------------------~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEGKNAVVIGRSHI-----VGQPVSKLLLQ-KNASVTILHSRSKDM--------------------ASYLKDADVIVS 207 (286)
T ss_pred CCCCCCEEEEECCCch-----hHHHHHHHHHH-CCCeEEEEeCCchhH--------------------HHHHhhCCEEEE
Q ss_pred Ecc
Q 024934 135 GFP 137 (260)
Q Consensus 135 GsP 137 (260)
+++
T Consensus 208 Avg 210 (286)
T PRK14175 208 AVG 210 (286)
T ss_pred CCC
No 371
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.28 E-value=1.4e+02 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=30.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
.|+||+||+-...-+...+++.+.+-+.+ .|+++.+..
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDE 41 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 47889999877666777889999998888 888887654
No 372
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=23.08 E-value=2.7e+02 Score=25.81 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=28.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.++-+++.+.......+++.|++.+++ .|+++++..+.
T Consensus 323 ~~l~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~~ 360 (466)
T cd00995 323 LELTLLYNSDGPTRKEIAEAIQAQLKE-IGIKVEIEPLD 360 (466)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHH-cCceEEEEEec
Confidence 456666655443567899999999999 89999887764
No 373
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.05 E-value=3.5e+02 Score=27.69 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=44.7
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
.+|+||. +|+.-..|..+++.|++ .|++++++++.-..|- |...+ ..-+.....||..=--+
T Consensus 544 ~dvtIva---~G~~v~~Al~Aa~~L~~-~GI~~~VId~~~lkPl-------------D~~~i-~~~~k~~~~vVtvEe~~ 605 (677)
T PLN02582 544 ERVALLG---YGTAVQSCLAAASLLER-HGLSATVADARFCKPL-------------DRALI-RSLAKSHEVLITVEEGS 605 (677)
T ss_pred CCEEEEe---ecHHHHHHHHHHHHHHh-cCCCEEEEEcCcCCCC-------------CHHHH-HHHhhhCCEEEEECCCC
Confidence 4666665 45566666666777777 7999999999865431 11111 12234455555544334
Q ss_pred CCCchHHHHHHHHH
Q 024934 140 YGCMAAQMKAFFDS 153 (260)
Q Consensus 140 ~g~~~~~mK~flD~ 153 (260)
.|++...+-.++-.
T Consensus 606 ~GG~Gs~va~~l~~ 619 (677)
T PLN02582 606 IGGFGSHVAQFMAL 619 (677)
T ss_pred CCcHHHHHHHHHHh
Confidence 47777666666654
No 374
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.98 E-value=1.1e+02 Score=23.09 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=26.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
..+-++|..|..|+|+.+.+.+. .+++ .|+.+..+--
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~-~ak~-~g~~vi~iT~ 88 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLR-FAKE-RGAPVILITS 88 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHH-HHHH-TTSEEEEEES
T ss_pred cccceeEeeeccccchhhhhhhH-HHHh-cCCeEEEEeC
Confidence 44566666678899999998888 6666 6887755553
No 375
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.74 E-value=1.2e+02 Score=27.90 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=28.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE-cCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR-VPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~-l~~ 99 (260)
.|++||+.. .-....+.+.+.+.|++ .|+++.+|+ +..
T Consensus 22 gr~lvVt~~-~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~ 60 (366)
T PF00465_consen 22 GRVLVVTDP-SLSKSGLVDRVLDALEE-AGIEVQVFDGVGP 60 (366)
T ss_dssp TEEEEEEEH-HHHHHTHHHHHHHHHHH-TTCEEEEEEEESS
T ss_pred CCEEEEECc-hHHhCccHHHHHHHHhh-CceEEEEEecCCC
Confidence 399999977 33333388899999977 899998888 443
No 376
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=22.51 E-value=3.9e+02 Score=21.08 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=28.3
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+.++|++||..-.-...-....+.++..+.. ...+.++|+.++++=
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK 109 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANK 109 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeC
Confidence 457899999997443332222334555555431 124568898887774
No 377
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=22.50 E-value=1.4e+02 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=27.7
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
||++|..+ .|........+.+.|.+ .|.++.++.....
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 38 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRA-AGYEVHVVAPPGD 38 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHh-cCCeeEEEecCCC
Confidence 68888877 44445566677788877 7999999876654
No 378
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=22.49 E-value=3.2e+02 Score=20.81 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=24.4
Q ss_pred eEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|++||+-.. .+..+ .+.+.+.+.. .+.+++++....
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~-~~~~~~~~~t~~ 38 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRA-AGIDYEVIETES 38 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHH-TTCEEEEEEESS
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHH-cCCceEEEEEec
Confidence 577777443 34444 4777888877 778888877755
No 379
>PLN02712 arogenate dehydrogenase
Probab=22.46 E-value=4.4e+02 Score=26.85 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=43.4
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhh-h-hhcCEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAAD-L-VEADGFL 133 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~-l-~~AD~II 133 (260)
+..++||.||= .|+ |...+++.+.+ .|.++..++-.+.. ..+.... .. ... +.++ + .++|.||
T Consensus 49 ~~~~~kIgIIG---~G~---mG~slA~~L~~-~G~~V~~~dr~~~~-~~A~~~G-v~----~~~--d~~e~~~~~aDvVi 113 (667)
T PLN02712 49 NTTQLKIAIIG---FGN---YGQFLAKTLIS-QGHTVLAHSRSDHS-LAARSLG-VS----FFL--DPHDLCERHPDVIL 113 (667)
T ss_pred cCCCCEEEEEc---cCH---HHHHHHHHHHH-CCCEEEEEeCCHHH-HHHHHcC-CE----EeC--CHHHHhhcCCCEEE
Confidence 33577888873 453 66677777776 67777776654211 1111111 10 011 1233 3 3699999
Q ss_pred EEccccCCCchHHHHHHHHHh
Q 024934 134 FGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 134 ~GsPtY~g~~~~~mK~flD~~ 154 (260)
+.+|.. .+..+++.+
T Consensus 114 LavP~~------~~~~vl~~l 128 (667)
T PLN02712 114 LCTSII------STENVLKSL 128 (667)
T ss_pred EcCCHH------HHHHHHHhh
Confidence 999973 456666654
No 380
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.32 E-value=2.7e+02 Score=24.15 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=40.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
||++.|+= +|| +-..++..+.. .|+||.+-.-+......-.....-+. -.-... .+....+|.|++..|-
T Consensus 1 m~~~~i~G---tGn---iG~alA~~~a~-ag~eV~igs~r~~~~~~a~a~~l~~~--i~~~~~-~dA~~~aDVVvLAVP~ 70 (211)
T COG2085 1 MMIIAIIG---TGN---IGSALALRLAK-AGHEVIIGSSRGPKALAAAAAALGPL--ITGGSN-EDAAALADVVVLAVPF 70 (211)
T ss_pred CcEEEEec---cCh---HHHHHHHHHHh-CCCeEEEecCCChhHHHHHHHhhccc--cccCCh-HHHHhcCCEEEEeccH
Confidence 56666653 444 44445555655 67888776443321100000000000 000011 3557789999999995
Q ss_pred cCCCchHHHHHHHHH
Q 024934 139 RYGCMAAQMKAFFDS 153 (260)
Q Consensus 139 Y~g~~~~~mK~flD~ 153 (260)
+. ++..++..-|.
T Consensus 71 ~a--~~~v~~~l~~~ 83 (211)
T COG2085 71 EA--IPDVLAELRDA 83 (211)
T ss_pred HH--HHhHHHHHHHH
Confidence 43 34445555553
No 381
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=22.31 E-value=3.7e+02 Score=20.67 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=30.6
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+.++|++||.+-+-.-.--..++.|+..+.... -.+.+..++++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~----~~~~~iivvg~ 112 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK----PEDIPIIVVGN 112 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS----TTTSEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccc----cccccceeeec
Confidence 34679999999988777665566778888765321 12456555554
No 382
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.22 E-value=60 Score=24.24 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEE
Q 024934 145 AQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLF 199 (260)
Q Consensus 145 ~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~v 199 (260)
+....|++++.. .||++.+++....+ +...+.+.|..+|+.+
T Consensus 17 pga~e~l~~L~~-------~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 17 PGAVEALDALRE-------RGKPVVFLTNNSSR------SREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTHHHHHHHHHH-------TTSEEEEEES-SSS-------HHHHHHHHHHTTTT-
T ss_pred cCHHHHHHHHHH-------cCCCEEEEeCCCCC------CHHHHHHHHHhcCcCC
Confidence 334778887742 58999888876442 2345677777887654
No 383
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.22 E-value=1.9e+02 Score=24.24 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=28.0
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|+||-|- -||...+.+.+.+ .|+++.+++ + .+++..+|+|||--|
T Consensus 2 i~iid~g-~~n~~~v~~~l~~-----~g~~~~~~~--~-----------------------~~~l~~~d~lilPG~ 46 (201)
T PRK13152 2 IALIDYK-AGNLNSVAKAFEK-----IGAINFIAK--N-----------------------PKDLQKADKLLLPGV 46 (201)
T ss_pred EEEEECC-CCcHHHHHHHHHH-----CCCeEEEEC--C-----------------------HHHHcCCCEEEECCC
Confidence 5666543 4677877777664 355665533 2 345678999999444
No 384
>PRK00074 guaA GMP synthase; Reviewed
Probab=22.17 E-value=2.3e+02 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=20.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
+.+|+||=+ ...+|..+++++.+ .|+.++++...
T Consensus 3 ~~~i~vlD~-Gsq~~~li~r~lre-----lg~~~~v~p~~ 36 (511)
T PRK00074 3 HDKILILDF-GSQYTQLIARRVRE-----LGVYSEIVPYD 36 (511)
T ss_pred CCEEEEEEC-CCCcHHHHHHHHHH-----CCCeEEEEECC
Confidence 557887764 23346666666544 46777777643
No 385
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=22.08 E-value=4.4e+02 Score=21.52 Aligned_cols=51 Identities=8% Similarity=-0.088 Sum_probs=27.5
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||.+-.-.-.--..++.|++.+..........+.|+.++++=
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK 119 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANK 119 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEC
Confidence 456899999998775443323344556655432110111245676666653
No 386
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=22.05 E-value=4.3e+02 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=26.3
Q ss_pred eEEEEEec-CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYS-MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S-~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
||.+++.. .......+.+.+.+.+++ .|+++.+++...
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~~l~~~~~~~ 39 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGYQVLLANSQN 39 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 35555532 345567788888888888 888888777654
No 387
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=21.97 E-value=1.3e+02 Score=25.30 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=8.9
Q ss_pred hhhcCEEEEEc
Q 024934 126 LVEADGFLFGF 136 (260)
Q Consensus 126 l~~AD~II~Gs 136 (260)
+.++|+|||..
T Consensus 38 l~~~D~lilPG 48 (198)
T cd03130 38 LPDADGLYLGG 48 (198)
T ss_pred CCCCCEEEECC
Confidence 44699999988
No 388
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.89 E-value=6.2e+02 Score=23.18 Aligned_cols=123 Identities=16% Similarity=0.041 Sum_probs=64.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD~II~G 135 (260)
+...=+||+. .+++.+.+.+.+.. ..- +++-|-.+-.... ..||+.-+ ..++ .....+.+-
T Consensus 55 l~e~d~v~Gg----~e~l~~~i~~~~~~-~~p--~~i~v~~tc~~~l--------iGdDi~~v-~~~~~~~~~~~vv~~~ 118 (399)
T cd00316 55 MTEKDVVFGG----GEKLLEAIINELKR-YKP--KVIFVYTTCTTEL--------IGDDIEAV-AKEASKEIGIPVVPAS 118 (399)
T ss_pred CCcCceeeCC----HHHHHHHHHHHHHH-cCC--CEEEEecCchhhh--------hccCHHHH-HHHHHHhhCCceEEee
Confidence 3334455543 67777777777765 222 3444433211111 12455443 3333 467899999
Q ss_pred ccccCCCchHHHHHHHHHhcccccC----CCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKE----GKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~----~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
+|-|.++........+..+...+.. ..-..+.+-+++.... .. ..+..+.+.|...|+.++.
T Consensus 119 ~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~--~~--~d~~el~~ll~~~G~~v~~ 184 (399)
T cd00316 119 TPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNL--GG--GDLRELKRLLEEMGIRVNA 184 (399)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCC--ch--hhHHHHHHHHHHcCCcEEE
Confidence 9988876665555544444332221 1223344445444322 11 2346777788888887754
No 389
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=21.77 E-value=1.6e+02 Score=28.59 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=22.3
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcc
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGM 156 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~ 156 (260)
.+++.+||-|||.|| ..++.||+++..
T Consensus 295 l~~l~~ydwlvFTS~-------ngV~~Ff~~l~~ 321 (474)
T PRK07168 295 INEIFNVNRLVFCSA-------ESVEILMQSCSK 321 (474)
T ss_pred HHHhccCCEEEEcCH-------HHHHHHHHHHHH
Confidence 578899999999986 467899998864
No 390
>PRK08655 prephenate dehydrogenase; Provisional
Probab=21.68 E-value=2.2e+02 Score=27.19 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=41.1
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+||-++ | .|...++..+.+ .|.++.+++..............+.. .... .+.+.++|.||+..|+.
T Consensus 1 MkI~IIGG~--G---~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~-~e~~~~aDvVIlavp~~ 69 (437)
T PRK08655 1 MKISIIGGT--G---GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVEY----ANDN-IDAAKDADIVIISVPIN 69 (437)
T ss_pred CEEEEEecC--C---HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCee----ccCH-HHHhccCCEEEEecCHH
Confidence 477776432 2 255556666666 67788888754321111111111100 0111 34577899999999974
Q ss_pred CCCchHHHHHHHHHh
Q 024934 140 YGCMAAQMKAFFDST 154 (260)
Q Consensus 140 ~g~~~~~mK~flD~~ 154 (260)
.+..+++.+
T Consensus 70 ------~~~~vl~~l 78 (437)
T PRK08655 70 ------VTEDVIKEV 78 (437)
T ss_pred ------HHHHHHHHH
Confidence 344555554
No 391
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=21.48 E-value=87 Score=24.16 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=23.9
Q ss_pred CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 69 MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 69 ~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..|-.+..+..+++++.+ .|.+++++-...
T Consensus 10 ~~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAK-RGHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHH-TT-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHH-CCCEEEEEEcCC
Confidence 467788899999999998 999999996554
No 392
>PRK09273 hypothetical protein; Provisional
Probab=21.40 E-value=1.3e+02 Score=26.11 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=28.5
Q ss_pred CeEEEEEe-cCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFY-SMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~-S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|||.+|.. |+......+.+.+.+.+++ .|.+| +|+..
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~-~G~eV--~D~G~ 38 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADP-KGHEV--FNYGM 38 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHH-CCCEE--EEeCC
Confidence 78988884 4566778899999999998 88766 55553
No 393
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=21.40 E-value=2.6e+02 Score=27.42 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=26.9
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
++-+.|++.+.....+|+.|++.+++ .|+++++..+.
T Consensus 404 ~l~l~~~~~~~~~~~~A~~iq~~l~~-~GI~v~i~~~~ 440 (552)
T PRK13626 404 SLTLTFYQDHSEHRVIAGIMQQLLAS-HGVTLEIQEID 440 (552)
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHH-hCcEEEEEEee
Confidence 44455555445567899999999999 79998885553
No 394
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.29 E-value=5.2e+02 Score=22.04 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=28.3
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
||++|..+. .|-.+.++..+.+.+.+ .|.+++++-+..
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~-~~~~v~~~~~~~ 39 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDR-DRFEHVVISLTD 39 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhh-ccceEEEEecCc
Confidence 577777654 35578888888888877 788888887654
No 395
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=21.28 E-value=3.6e+02 Score=27.07 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=48.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
...+++++|-+..-.+..+.+.+.+.+.. .-++.+.+++.+. +.+. ...+..+++||+..+
T Consensus 52 ~~~~l~~l~d~~~~~s~~~~~n~~kil~~-~K~~~~~id~~~~-----------------~~~~-~p~l~~Y~~vII~~~ 112 (585)
T PF09960_consen 52 EKEKLLILYDSNGELSMDIKENFKKILEY-MKIPYDTIDIAEF-----------------IKSS-IPSLSDYRGVIILTT 112 (585)
T ss_pred ccceEEEEECCCChHHHHHHHHHHHHHHH-hccccEeeecccc-----------------cccc-CCcccceeEEEEEec
Confidence 35577778877655567777888888876 6667888887742 1111 334567887777665
Q ss_pred ccCCCchHHHHHHHHH
Q 024934 138 TRYGCMAAQMKAFFDS 153 (260)
Q Consensus 138 tY~g~~~~~mK~flD~ 153 (260)
-...=-...+++|...
T Consensus 113 ~l~~l~~~~i~~yV~~ 128 (585)
T PF09960_consen 113 DLDPLGNEAIMNYVEN 128 (585)
T ss_pred cccccChHHHHHHHHc
Confidence 4321112667777764
No 396
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=21.25 E-value=1.9e+02 Score=23.62 Aligned_cols=103 Identities=16% Similarity=0.034 Sum_probs=47.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
++||+|+.+-..-..+.+ .-.+.+++ .|.++++.......... ..........++.. ++..+..+||+|++-.-.
T Consensus 2 ~~~i~i~~~~g~e~~E~~--~p~~~l~~-ag~~v~~~~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~ydal~ipGG~ 76 (188)
T COG0693 2 MKKIAILLADGFEDLELI--VPYDVLRR-AGFEVDVASPEGKGKSV-TSKRGGLVVADDKA-FDDADAADYDALVIPGGD 76 (188)
T ss_pred CceeEEEecCcceehhHh--HHHHHHHH-CCCeEEEEecCCCccee-ecccCcceEecccc-cccCCHhHCCEEEECCCc
Confidence 577887764433233332 33445555 67778777766520000 00000000001100 001125699999986653
Q ss_pred cCCC--ch-HHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 139 RYGC--MA-AQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 139 Y~g~--~~-~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
++-. .+ ..+..|+.+.. -.||+++.++.
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~-------~~~k~vaaIC~ 107 (188)
T COG0693 77 HGPEYLRPDPDLLAFVRDFY-------ANGKPVAAICH 107 (188)
T ss_pred cchhhccCcHHHHHHHHHHH-------HcCCEEEEECh
Confidence 3311 11 45566666542 24666655543
No 397
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=21.23 E-value=35 Score=25.75 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=12.7
Q ss_pred CcccccHhhhhhcCEEEEE
Q 024934 117 DIPEISAADLVEADGFLFG 135 (260)
Q Consensus 117 d~~~i~~~~l~~AD~II~G 135 (260)
+.|. +.+.+.+||.|++-
T Consensus 40 e~Pl-t~e~leWAdiIfVM 57 (109)
T COG4551 40 ETPL-TREQLEWADIIFVM 57 (109)
T ss_pred CCCc-cHHHhhhhhhhhhH
Confidence 4443 37889999988753
No 398
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.22 E-value=1.9e+02 Score=26.10 Aligned_cols=38 Identities=13% Similarity=-0.105 Sum_probs=29.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
.|++|+||+-...-....+++.+.+-+++ .|+++.+..
T Consensus 4 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~ 41 (292)
T PRK03378 4 HFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQ 41 (292)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 47889999877666777888999988887 788876543
No 399
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=21.12 E-value=1.2e+02 Score=25.83 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=30.1
Q ss_pred eEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
||+++..+. .|-....+..+.+.+.+ .|.++.++.....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDK-RGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHh-cCceEEEEEcCCC
Confidence 678888775 56667778888888877 7999999877654
No 400
>PRK05665 amidotransferase; Provisional
Probab=21.09 E-value=5.6e+02 Score=22.31 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=9.2
Q ss_pred hhhhcCEEEE-Eccc
Q 024934 125 DLVEADGFLF-GFPT 138 (260)
Q Consensus 125 ~l~~AD~II~-GsPt 138 (260)
++.++|+||+ |+|-
T Consensus 54 ~~~~~dgiiitGs~~ 68 (240)
T PRK05665 54 DDEKFDAYLVTGSKA 68 (240)
T ss_pred CcccCCEEEECCCCC
Confidence 3567999866 5553
No 401
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=21.00 E-value=4.5e+02 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.026 Sum_probs=23.7
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEE
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGL 93 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~ 93 (260)
-+||.|||.+. +| +.+++.+.+.+++ .|+++.
T Consensus 172 w~~vaii~~~~~~G--~~~~~~~~~~~~~-~gi~i~ 204 (452)
T cd06362 172 WTYVSTVASEGNYG--EKGIEAFEKLAAE-RGICIA 204 (452)
T ss_pred CcEEEEEEeCCHHH--HHHHHHHHHHHHH-CCeeEE
Confidence 57888988764 56 4578888888887 777664
No 402
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=20.78 E-value=3.4e+02 Score=23.79 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=25.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
.++|.+||.. +...+.+++.+.+.+++ .|+++....
T Consensus 135 ~~~v~~v~~~-~~~g~~~~~~~~~~~~~-~g~~v~~~~ 170 (334)
T cd06342 135 AKKVAIIDDK-TAYGQGLADEFKKALKA-AGGKVVARE 170 (334)
T ss_pred CCEEEEEeCC-cchhhHHHHHHHHHHHH-cCCEEEEEe
Confidence 5678888744 34446678888888887 788776543
No 403
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.72 E-value=1.4e+02 Score=27.44 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=28.7
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
||||++.....||..-++ .+++.|.+ .|++|.++--..
T Consensus 1 mrIl~~~~p~~GHv~P~l-~la~~L~~-rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTIGSRGDVQPLV-ALAWALRA-AGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeCCCcchHHHHH-HHHHHHHH-CCCeEEEeeCHh
Confidence 689988877899988766 45556666 799998877654
No 404
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=20.57 E-value=1.4e+02 Score=25.93 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.2
Q ss_pred eEEEEEec--C--chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 61 KIFIVFYS--M--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 61 KVlIIy~S--~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|||+|..+ + .|-.+..+..++++|.+ .|.+|.++.....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 43 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAK-RGHEVAVLTAGED 43 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHh-cCCceEEEeCCCC
Confidence 57777543 2 35677888888999987 8999999977654
No 405
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=20.56 E-value=4.1e+02 Score=20.88 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=28.4
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+.++|++||.+-...-.-...++.|++.+... ....+.++.++++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piiiv~n 128 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH---AYCENPDIVLCGN 128 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEe
Confidence 4578999999998876544444566676665321 1123556655554
No 406
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=20.52 E-value=1.9e+02 Score=27.12 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=24.1
Q ss_pred CeEEEEE-ecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCc
Q 024934 60 LKIFIVF-YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT 102 (260)
Q Consensus 60 ~KVlIIy-~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~ 102 (260)
.+++||. +|.++.....++ .+++ .|+++.++++.-..|
T Consensus 274 ad~~iv~~Gs~~~~a~eAv~----~Lr~-~G~~v~~l~~~~l~P 312 (376)
T PRK08659 274 AEVVVVAYGSVARSARRAVK----EARE-EGIKVGLFRLITVWP 312 (376)
T ss_pred CCEEEEEeCccHHHHHHHHH----HHHh-cCCceEEEEeCeecC
Confidence 3455444 565655554444 4555 788999999987654
No 407
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.50 E-value=94 Score=27.53 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=24.7
Q ss_pred CCCeEEEEEecCchhHHH-HHHHHHHHccCCCCceEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEG-LAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~-lA~~i~~~l~~~~G~ev~li~ 96 (260)
..+|++||... ||.. +.+.+.+.+++ .|+++..+.
T Consensus 18 ~~~~~lvv~d~---~t~~~~g~~v~~~l~~-~g~~v~~~~ 53 (250)
T PF13685_consen 18 GLKKVLVVTDE---NTYKAAGEKVEESLKS-AGIEVAVIE 53 (250)
T ss_dssp T-SEEEEEEET---THHHHHHHHHHHHHHT-TT-EEEEEE
T ss_pred CCCcEEEEEcC---CHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 35689998844 4544 56899999998 899888665
No 408
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=20.45 E-value=2.3e+02 Score=21.86 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=23.3
Q ss_pred HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 74 EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 74 ~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
..+|+.|++.+.- .-.++++.+..+-. ..-.+ .+.+...|.+|+.+=.
T Consensus 10 ~~La~~ia~~L~~-~~~~~~~~~F~dGE---------------~~v~i-~~~v~g~dv~iiqs~~ 57 (116)
T PF13793_consen 10 QDLAERIAEALGI-PLGKVETKRFPDGE---------------TYVRI-PESVRGKDVFIIQSTS 57 (116)
T ss_dssp HHHHHHHHHHTTS--EE-EEEEE-TTS----------------EEEEE-SS--TTSEEEEE---S
T ss_pred HHHHHHHHHHhCC-ceeeeEEEEcCCCC---------------EEEEe-cccccCCceEEEEecC
Confidence 5688899998865 44455555555420 01112 3556677777776644
No 409
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=20.34 E-value=93 Score=24.12 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=25.4
Q ss_pred EEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 64 IVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 64 IIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.+|.+.+-....+.+.|..|+++ +|+..++++..+
T Consensus 6 ~i~~~~~~~~~~~lrev~aGIEE-EGip~~~~~~~~ 40 (112)
T PF02288_consen 6 GIYVSKTIEGSDVLREVLAGIEE-EGIPYRVVRVSD 40 (112)
T ss_dssp CCCEECTTTCHHHHHHHHHHHHC-TT-EEEEEEECS
T ss_pred EEEecCCCcchhHHHHHHhHhcc-cCCCeEEEeecC
Confidence 34555443336799999999999 999999977665
No 410
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=20.32 E-value=5.9e+02 Score=22.32 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=30.8
Q ss_pred hhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcE-EecC
Q 024934 126 LVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGML-FVPI 202 (260)
Q Consensus 126 l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~-vV~~ 202 (260)
+.++|.|++.+|... ...+...+- -.||.+.+. +.|.- . .......+......+|.. +++.
T Consensus 59 l~~~DvVvi~a~~~~------~~~~~~~al-------~~Gk~Vvv~-s~gAl-~-d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 59 VEDVDLVVECASVNA------VEEVVPKSL-------ENGKDVIIM-SVGAL-A-DKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred hcCCCEEEEcCChHH------HHHHHHHHH-------HcCCCEEEE-chHHh-c-CHHHHHHHHHHHHHcCCEEEEeC
Confidence 378999999987422 233332221 146776443 33221 1 122235666666676744 4443
No 411
>PRK06217 hypothetical protein; Validated
Probab=20.28 E-value=1.6e+02 Score=24.05 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=20.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVD 85 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~ 85 (260)
|+||+|+=.|..|.|. +++.+++.+.
T Consensus 1 ~~~I~i~G~~GsGKST-la~~L~~~l~ 26 (183)
T PRK06217 1 MMRIHITGASGSGTTT-LGAALAERLD 26 (183)
T ss_pred CeEEEEECCCCCCHHH-HHHHHHHHcC
Confidence 7888888777788876 7888887763
No 412
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=20.28 E-value=6.4e+02 Score=22.71 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.3
Q ss_pred Hhhhhh---cCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEE
Q 024934 123 AADLVE---ADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLF 199 (260)
Q Consensus 123 ~~~l~~---AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~v 199 (260)
.+++.+ -|..|+..| +..+...++.+. -+|-+++++.+.|. .+..-..+.+....+||.+
T Consensus 55 v~dlp~~~~~Dlavi~vp------a~~v~~~l~e~~-------~~Gvk~avIis~Gf----~e~~~~~l~~~a~~~giri 117 (286)
T TIGR01019 55 VKEAVEETGANASVIFVP------APFAADAIFEAI-------DAGIELIVCITEGI----PVHDMLKVKRYMEESGTRL 117 (286)
T ss_pred HHHHhhccCCCEEEEecC------HHHHHHHHHHHH-------HCCCCEEEEECCCC----CHHHHHHHHHHHHHcCCEE
Confidence 345544 599999988 344444455543 14666777777654 2222356777888899999
Q ss_pred ecC
Q 024934 200 VPI 202 (260)
Q Consensus 200 V~~ 202 (260)
++.
T Consensus 118 lGP 120 (286)
T TIGR01019 118 IGP 120 (286)
T ss_pred ECC
Confidence 986
No 413
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=20.27 E-value=86 Score=27.81 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=13.1
Q ss_pred HhhhhhcCEEEEEccc
Q 024934 123 AADLVEADGFLFGFPT 138 (260)
Q Consensus 123 ~~~l~~AD~II~GsPt 138 (260)
.+++.+||.|||.||.
T Consensus 64 l~~l~~~d~iiftS~N 79 (266)
T PRK08811 64 LRQALAAPIVVFTSPA 79 (266)
T ss_pred HhhcccCCEEEEECHH
Confidence 4567799999999973
No 414
>PLN02735 carbamoyl-phosphate synthase
Probab=20.25 E-value=7.1e+02 Score=27.08 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.2
Q ss_pred CCCeEEEEEecCc--hhH---HHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMY--GHV---EGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~--GnT---~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.++|||||-+... |+. +.-...+.+.|++ .|++|.+++...
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke-~G~~Vi~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKE-EGYEVVLINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHH-cCCEEEEEeCCc
Confidence 4789999887653 322 2345677788888 899999888654
No 415
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=20.24 E-value=4.2e+02 Score=20.58 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=9.7
Q ss_pred hhcCEEEE-Ecccc
Q 024934 127 VEADGFLF-GFPTR 139 (260)
Q Consensus 127 ~~AD~II~-GsPtY 139 (260)
..||+|++ |.|.-
T Consensus 51 ~GADGV~V~gC~~g 64 (124)
T PF02662_consen 51 KGADGVLVAGCHPG 64 (124)
T ss_pred cCCCEEEEeCCCCC
Confidence 57999988 77643
No 416
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=20.15 E-value=1.9e+02 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=22.0
Q ss_pred EEEEEecCchhHH--HHHHHHHHHccCCCCceEEEEEcCC
Q 024934 62 IFIVFYSMYGHVE--GLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 62 VlIIy~S~~GnT~--~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|-|.+.|.+||++ +=-+.+..-|+. .+++.+.+|+..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a-~kI~fe~vDIa~ 41 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEA-KKIPFEEVDIAM 41 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHH-TT--EEEEETTT
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHH-cCCCcEEEeCcC
Confidence 4454555678754 334556666666 789999999986
No 417
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.12 E-value=6.9e+02 Score=23.63 Aligned_cols=124 Identities=15% Similarity=0.010 Sum_probs=63.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh--hhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL--VEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l--~~AD~II~Gs 136 (260)
+...-+||+. .++|.+.|.+..+. . ..+++-|-.+-.... ..||+..+ ..++ .....|.+-+
T Consensus 61 l~E~d~V~Gg----~~kL~~~I~~~~~~-~--~p~~I~V~ttC~~~~--------IGdDi~~v-~~~~~~~~~~vi~v~t 124 (427)
T cd01971 61 ATETEIVFGG----EDRLRELIKSTLSI-I--DADLFVVLTGCIAEI--------IGDDVGAV-VSEFQEGGAPIVYLET 124 (427)
T ss_pred CCccceEeCC----HHHHHHHHHHHHHh-C--CCCEEEEEcCCcHHH--------hhcCHHHH-HHHhhhcCCCEEEEEC
Confidence 4445555654 57788888877654 1 234455444311111 13555544 3444 3467899999
Q ss_pred cccCCCchHH----HHHHHHHhcccccCC-CCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 137 PTRYGCMAAQ----MKAFFDSTGMLWKEG-KLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 137 PtY~g~~~~~----mK~flD~~~~l~~~~-~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
|-|.++...- ++.+++.+-. .. .-..+.+-+++.....+......+..+.+.|...|+.+..
T Consensus 125 ~gf~g~~~~G~~~a~~al~~~~~~---~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 125 GGFKGNNYAGHEIVLKAIIDQYVG---QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred CCcCcccccHHHHHHHHHHHHhcc---CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 9998866444 4455544321 11 0122335455432111110011246677788888887643
No 418
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=20.06 E-value=1.1e+02 Score=27.37 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=32.2
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
.||+|+..-.+..-+.++.+ ++. .|.+++.+.+.+... ....+.++|+|+|.--.=
T Consensus 2 pkV~Vl~~pGtNce~e~~~A----~~~-aG~~~~~v~~~dl~~-------------------~~~~l~~~~~lvipGGFS 57 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAA----FEN-AGFEPEIVHINDLLS-------------------GESDLDDFDGLVIPGGFS 57 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHH----HHC-TT-EEEEEECCHHHT-------------------TS--GCC-SEEEE-EE-G
T ss_pred CEEEEEECCCCCCHHHHHHH----HHH-cCCCceEEEEEeccc-------------------ccCchhhCcEEEECCccC
Confidence 58888876554444445554 445 688999888765310 124678999998865544
Q ss_pred CCC
Q 024934 140 YGC 142 (260)
Q Consensus 140 ~g~ 142 (260)
+|.
T Consensus 58 ~gD 60 (259)
T PF13507_consen 58 YGD 60 (259)
T ss_dssp GGG
T ss_pred ccc
Confidence 433
No 419
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=20.00 E-value=5.4e+02 Score=23.54 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.-+||.|||.+.+|... ++.+.+.+++ .|+++....+
T Consensus 138 ~wk~vaily~~~~g~~~--l~~~~~~~~~-~g~~v~~~~~ 174 (384)
T cd06393 138 KWRSATVVYDDSTGLIR--LQELIMAPSR-YNIRLKIRQL 174 (384)
T ss_pred CCcEEEEEEeCchhHHH--HHHHHHhhhc-cCceEEEEEC
Confidence 47899999976555332 3456666666 6777765443
Done!