Query 024934
Match_columns 260
No_of_seqs 181 out of 2205
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5l_A Trp repressor binding p 100.0 1.5E-32 5E-37 231.4 19.0 194 58-258 4-199 (200)
2 3b6i_A Flavoprotein WRBA; flav 100.0 4.7E-32 1.6E-36 228.0 21.6 194 59-258 1-197 (198)
3 2zki_A 199AA long hypothetical 100.0 6.7E-31 2.3E-35 221.5 19.2 193 58-259 3-196 (199)
4 1ydg_A Trp repressor binding p 100.0 4.1E-31 1.4E-35 225.1 16.8 192 58-259 5-202 (211)
5 3d7n_A Flavodoxin, WRBA-like p 100.0 2.7E-30 9.1E-35 218.1 16.6 181 58-259 5-189 (193)
6 2ark_A Flavodoxin; FMN, struct 100.0 3.3E-27 1.1E-31 198.1 19.7 165 58-258 3-169 (188)
7 3hly_A Flavodoxin-like domain; 99.9 1.5E-25 5.1E-30 184.1 15.6 145 60-257 1-145 (161)
8 3fni_A Putative diflavin flavo 99.9 2.4E-25 8.2E-30 182.7 16.2 147 59-257 4-150 (159)
9 1sqs_A Conserved hypothetical 99.9 1.2E-25 4E-30 195.9 13.2 168 59-256 1-179 (242)
10 2q62_A ARSH; alpha/beta, flavo 99.9 4.1E-24 1.4E-28 187.4 19.1 178 58-259 33-213 (247)
11 2vzf_A NADH-dependent FMN redu 99.9 6.4E-25 2.2E-29 185.5 11.3 172 59-256 2-177 (197)
12 2fzv_A Putative arsenical resi 99.9 7E-24 2.4E-28 188.7 16.2 179 58-259 57-238 (279)
13 1rtt_A Conserved hypothetical 99.9 4.4E-24 1.5E-28 179.4 13.3 178 58-257 5-185 (193)
14 1rli_A Trp repressor binding p 99.9 1.4E-24 4.9E-29 180.1 6.7 167 58-252 2-183 (184)
15 5nul_A Flavodoxin; electron tr 99.9 1.5E-23 5.1E-28 166.8 12.4 135 62-252 1-137 (138)
16 3k1y_A Oxidoreductase; structu 99.9 3.1E-23 1.1E-27 175.2 13.7 172 57-257 9-189 (191)
17 3gfs_A FMN-dependent NADPH-azo 99.9 1.1E-23 3.7E-28 174.4 10.5 167 60-256 1-169 (174)
18 3f6r_A Flavodoxin; FMN binding 99.9 4.7E-23 1.6E-27 165.8 13.4 143 59-253 1-147 (148)
19 3fvw_A Putative NAD(P)H-depend 99.9 3.2E-23 1.1E-27 174.8 12.0 177 59-258 2-186 (192)
20 2q9u_A A-type flavoprotein; fl 99.9 2.8E-22 9.7E-27 186.3 16.6 150 58-258 255-407 (414)
21 4hs4_A Chromate reductase; tri 99.9 4.5E-22 1.5E-26 169.0 14.3 178 59-258 6-188 (199)
22 2fz5_A Flavodoxin; alpha/beta 99.9 4.3E-22 1.5E-26 157.4 12.9 134 61-252 1-136 (137)
23 2hpv_A FMN-dependent NADH-azor 99.9 9E-23 3.1E-27 173.0 9.1 171 59-252 1-206 (208)
24 1t0i_A YLR011WP; FMN binding p 99.9 1.5E-22 5E-27 169.6 9.3 132 60-201 1-149 (191)
25 1t5b_A Acyl carrier protein ph 99.9 3.9E-22 1.3E-26 167.4 11.9 142 59-202 1-171 (201)
26 1f4p_A Flavodoxin; electron tr 99.9 3.6E-22 1.2E-26 160.3 10.6 141 60-252 1-145 (147)
27 3svl_A Protein YIEF; E. coli C 99.9 4.5E-22 1.6E-26 168.2 11.2 179 58-258 3-187 (193)
28 2ohh_A Type A flavoprotein FPR 99.9 1.7E-21 5.9E-26 180.0 13.9 149 58-255 255-403 (404)
29 3u7r_A NADPH-dependent FMN red 99.9 7.3E-21 2.5E-25 160.5 15.7 177 59-257 2-181 (190)
30 3s2y_A Chromate reductase; ura 99.8 3.7E-23 1.3E-27 175.7 0.0 179 58-258 5-188 (199)
31 4dik_A Flavoprotein; TM0755, e 99.9 4.2E-21 1.4E-25 179.6 13.9 152 49-250 257-408 (410)
32 3lcm_A SMU.1420, putative oxid 99.8 1.7E-20 5.7E-25 158.7 14.4 136 60-201 1-159 (196)
33 1d4a_A DT-diaphorase, quinone 99.8 1.1E-20 3.8E-25 167.7 12.2 141 59-201 2-185 (273)
34 3r6w_A FMN-dependent NADH-azor 99.8 1.3E-20 4.4E-25 160.7 10.7 142 59-202 1-181 (212)
35 1czn_A Flavodoxin; FMN binding 99.8 1.2E-19 4.1E-24 148.9 16.0 159 60-253 1-166 (169)
36 1e5d_A Rubredoxin\:oxygen oxid 99.8 7.2E-20 2.5E-24 169.0 16.3 149 59-258 252-400 (402)
37 1obo_A Flavodoxin; electron tr 99.8 2.8E-19 9.6E-24 146.7 17.2 162 60-254 2-167 (169)
38 1ycg_A Nitric oxide reductase; 99.8 5.6E-20 1.9E-24 169.5 14.0 146 59-255 251-397 (398)
39 3f2v_A General stress protein 99.8 2.1E-19 7.3E-24 151.8 14.9 132 59-202 1-147 (192)
40 1ykg_A SIR-FP, sulfite reducta 99.8 1.3E-19 4.4E-24 149.3 11.3 148 57-256 7-155 (167)
41 2wc1_A Flavodoxin; electron tr 99.8 1.6E-19 5.6E-24 150.3 10.7 165 59-255 1-177 (182)
42 3p0r_A Azoreductase; structura 99.8 2.4E-20 8.1E-25 159.5 5.6 141 58-201 3-179 (211)
43 3tem_A Ribosyldihydronicotinam 99.8 2.1E-19 7.1E-24 155.6 11.5 116 60-177 2-150 (228)
44 1ag9_A Flavodoxin; electron tr 99.8 3E-18 1E-22 141.9 17.2 163 60-255 1-168 (175)
45 2amj_A Modulator of drug activ 99.8 2.4E-18 8.2E-23 146.4 16.3 127 59-202 12-176 (204)
46 3u7i_A FMN-dependent NADH-azor 99.8 1.8E-19 6.2E-24 155.5 8.9 173 58-254 3-213 (223)
47 3klb_A Putative flavoprotein; 99.8 2.1E-18 7.1E-23 141.5 13.6 125 59-200 4-139 (162)
48 4ici_A Putative flavoprotein; 99.8 2E-18 6.9E-23 143.0 12.6 126 57-200 11-148 (171)
49 1yob_A Flavodoxin 2, flavodoxi 99.8 5.4E-18 1.8E-22 140.9 14.5 161 60-252 1-173 (179)
50 3edo_A Flavoprotein, putative 99.8 1.3E-18 4.4E-23 141.0 9.0 128 58-200 2-137 (151)
51 3rpe_A MDAB, modulator of drug 99.8 9.2E-18 3.1E-22 144.3 14.7 130 56-202 22-189 (218)
52 2hna_A Protein MIOC, flavodoxi 99.8 1.9E-19 6.6E-24 144.8 3.5 141 59-254 1-146 (147)
53 4gi5_A Quinone reductase; prot 99.8 4.7E-18 1.6E-22 151.3 12.0 118 58-177 21-178 (280)
54 2fcr_A Flavodoxin; electron tr 99.7 1.8E-17 6.2E-22 136.9 13.5 115 61-202 1-123 (173)
55 2bmv_A Flavodoxin; electron tr 99.7 5.4E-17 1.8E-21 132.7 12.5 154 59-252 1-161 (164)
56 1bvy_F Protein (cytochrome P45 99.7 3.2E-17 1.1E-21 138.2 9.6 120 58-201 20-140 (191)
57 3ha2_A NADPH-quinone reductase 99.7 1.2E-15 4.3E-20 127.0 14.9 122 60-202 1-139 (177)
58 3l9w_A Glutathione-regulated p 99.7 5.7E-16 2E-20 144.9 12.7 163 58-256 235-410 (413)
59 3hr4_A Nitric oxide synthase, 99.5 1.4E-13 4.8E-18 118.2 13.5 119 58-201 39-158 (219)
60 2bpo_A CPR, P450R, NADPH-cytoc 99.5 1.3E-13 4.5E-18 136.3 13.9 150 58-256 48-200 (682)
61 2xod_A NRDI protein, NRDI; fla 99.3 5.5E-12 1.9E-16 97.8 7.6 115 62-251 1-117 (119)
62 3qe2_A CPR, P450R, NADPH--cyto 99.3 2E-11 6.9E-16 119.4 12.1 122 59-201 18-142 (618)
63 1tll_A Nitric-oxide synthase, 99.1 7.8E-10 2.7E-14 109.4 16.0 121 58-201 10-171 (688)
64 1rlj_A NRDI protein; flavoprot 98.7 2E-08 6.9E-13 80.1 6.7 74 59-175 8-82 (139)
65 3n3a_C Protein NRDI; ribonucle 98.3 5.6E-07 1.9E-11 72.6 5.5 88 126-252 56-150 (153)
66 2m1z_A LMO0427 protein; homolo 96.3 0.0072 2.5E-07 45.5 5.7 66 59-140 2-69 (106)
67 2kyr_A Fructose-like phosphotr 96.2 0.008 2.7E-07 45.6 5.8 66 58-139 4-71 (111)
68 1tvm_A PTS system, galactitol- 96.1 0.007 2.4E-07 45.9 5.1 59 58-139 20-80 (113)
69 1e2b_A Enzyme IIB-cellobiose; 96.1 0.0078 2.7E-07 45.2 5.2 58 59-138 3-60 (106)
70 2r48_A Phosphotransferase syst 95.4 0.024 8.3E-07 42.6 5.4 65 59-139 2-68 (106)
71 2l2q_A PTS system, cellobiose- 95.1 0.017 5.9E-07 43.3 3.8 99 59-193 4-104 (109)
72 3czc_A RMPB; alpha/beta sandwi 95.1 0.031 1.1E-06 42.0 5.2 61 58-139 17-78 (110)
73 2r4q_A Phosphotransferase syst 95.0 0.022 7.4E-07 42.9 4.0 65 59-139 2-68 (106)
74 3nbm_A PTS system, lactose-spe 94.2 0.074 2.5E-06 40.0 5.4 82 58-173 5-86 (108)
75 3rht_A (gatase1)-like protein; 93.2 0.11 3.7E-06 45.1 5.3 74 58-154 3-76 (259)
76 1vkr_A Mannitol-specific PTS s 91.5 0.17 5.8E-06 38.9 4.0 36 58-94 12-48 (125)
77 4gdh_A DJ-1, uncharacterized p 89.6 0.25 8.4E-06 40.5 3.6 106 58-172 3-114 (194)
78 3kkl_A Probable chaperone prot 88.5 1.1 3.9E-05 38.1 7.1 41 59-100 3-53 (244)
79 2iuf_A Catalase; oxidoreductas 86.5 4.5 0.00015 39.7 10.7 95 58-174 528-641 (688)
80 1t0b_A THUA-like protein; treh 85.8 4.1 0.00014 34.7 9.2 78 59-154 7-94 (252)
81 4e5v_A Putative THUA-like prot 83.8 5.6 0.00019 34.5 9.2 78 58-154 3-83 (281)
82 3r5x_A D-alanine--D-alanine li 80.3 4 0.00014 34.9 6.9 41 58-99 2-45 (307)
83 3n7t_A Macrophage binding prot 79.8 3.5 0.00012 35.0 6.3 41 59-100 9-59 (247)
84 3l4e_A Uncharacterized peptida 75.2 2.6 8.8E-05 34.9 4.0 70 59-150 27-97 (206)
85 2gk3_A Putative cytoplasmic pr 73.4 4.9 0.00017 34.2 5.5 14 123-136 72-85 (256)
86 4gud_A Imidazole glycerol phos 72.9 3.8 0.00013 33.3 4.5 44 60-134 3-46 (211)
87 2h78_A Hibadh, 3-hydroxyisobut 72.2 18 0.00061 30.8 8.9 117 58-203 2-122 (302)
88 2a9v_A GMP synthase; structura 72.0 4.6 0.00016 33.2 4.8 50 58-135 12-61 (212)
89 1fy2_A Aspartyl dipeptidase; s 70.9 8.2 0.00028 32.2 6.2 69 58-152 30-99 (229)
90 3doj_A AT3G25530, dehydrogenas 70.8 38 0.0013 29.0 10.8 121 56-204 18-141 (310)
91 3s40_A Diacylglycerol kinase; 70.7 4.3 0.00015 35.3 4.5 40 58-98 7-48 (304)
92 3ej6_A Catalase-3; heme, hydro 70.2 25 0.00085 34.4 10.1 93 57-173 535-638 (688)
93 1u9c_A APC35852; structural ge 69.6 12 0.00042 30.5 7.0 40 59-99 5-52 (224)
94 3pdu_A 3-hydroxyisobutyrate de 68.7 21 0.00072 30.2 8.5 117 59-204 1-121 (287)
95 1yb4_A Tartronic semialdehyde 67.7 35 0.0012 28.6 9.7 116 58-203 2-121 (295)
96 1ka9_H Imidazole glycerol phos 67.2 11 0.00038 30.2 6.1 32 59-96 2-33 (200)
97 3efe_A THIJ/PFPI family protei 67.0 5.6 0.00019 32.6 4.3 100 59-173 5-113 (212)
98 2c92_A 6,7-dimethyl-8-ribityll 66.7 7 0.00024 31.2 4.6 70 57-143 15-88 (160)
99 3m3p_A Glutamine amido transfe 66.6 4.7 0.00016 34.3 3.8 55 59-137 3-58 (250)
100 3abi_A Putative uncharacterize 66.5 8 0.00027 34.3 5.5 88 55-153 12-100 (365)
101 2iuy_A Avigt4, glycosyltransfe 66.2 5.4 0.00019 34.2 4.2 40 59-99 3-57 (342)
102 3rh0_A Arsenate reductase; oxi 65.7 37 0.0013 26.3 8.7 79 56-138 17-102 (148)
103 1vhq_A Enhancing lycopene bios 65.5 12 0.00041 31.0 6.1 41 58-99 5-48 (232)
104 3r6d_A NAD-dependent epimerase 64.9 38 0.0013 26.9 9.0 89 58-155 3-96 (221)
105 2pv7_A T-protein [includes: ch 64.9 28 0.00096 29.8 8.6 67 58-155 20-86 (298)
106 1rw7_A YDR533CP; alpha-beta sa 63.0 12 0.00041 31.3 5.7 41 58-99 2-52 (243)
107 3ttv_A Catalase HPII; heme ori 62.5 18 0.00063 35.7 7.5 100 58-174 599-701 (753)
108 2nv0_A Glutamine amidotransfer 62.4 8.6 0.00029 30.8 4.5 12 125-136 35-46 (196)
109 3lkv_A Uncharacterized conserv 60.8 13 0.00046 31.7 5.7 43 56-99 137-179 (302)
110 3ax6_A Phosphoribosylaminoimid 60.7 19 0.00066 31.7 6.9 35 59-100 1-35 (380)
111 1oi4_A Hypothetical protein YH 60.4 14 0.00049 29.5 5.5 41 56-99 20-60 (193)
112 4gwg_A 6-phosphogluconate dehy 60.4 47 0.0016 30.9 9.8 123 58-204 3-129 (484)
113 3oti_A CALG3; calicheamicin, T 60.4 4.6 0.00016 35.7 2.7 41 55-97 16-56 (398)
114 4e08_A DJ-1 beta; flavodoxin-l 60.0 12 0.0004 29.8 4.9 40 57-99 3-42 (190)
115 1ejb_A Lumazine synthase; anal 59.9 14 0.00047 29.7 5.2 69 58-143 15-96 (168)
116 2i0f_A 6,7-dimethyl-8-ribityll 58.5 16 0.00054 29.0 5.2 40 60-100 13-53 (157)
117 2vpi_A GMP synthase; guanine m 57.8 12 0.00041 30.9 4.7 34 60-99 25-58 (218)
118 3g0o_A 3-hydroxyisobutyrate de 57.1 45 0.0015 28.4 8.5 119 58-204 6-128 (303)
119 2gco_A H9, RHO-related GTP-bin 56.4 29 0.001 27.1 6.7 46 124-174 92-138 (201)
120 3ew7_A LMO0794 protein; Q8Y8U8 56.4 27 0.00092 27.5 6.5 88 60-155 1-91 (221)
121 3ju3_A Probable 2-oxoacid ferr 56.0 16 0.00053 27.2 4.6 71 60-149 14-85 (118)
122 2gf9_A RAS-related protein RAB 55.8 48 0.0016 25.4 7.8 48 123-174 89-136 (189)
123 1qdl_B Protein (anthranilate s 55.5 8.4 0.00029 31.0 3.3 50 62-138 4-56 (195)
124 4dll_A 2-hydroxy-3-oxopropiona 55.5 39 0.0013 29.1 7.9 121 56-204 28-150 (320)
125 3qha_A Putative oxidoreductase 55.2 96 0.0033 26.2 12.0 116 59-204 15-131 (296)
126 3l7n_A Putative uncharacterize 54.8 17 0.00058 30.1 5.2 53 60-136 1-53 (236)
127 3u80_A 3-dehydroquinate dehydr 54.5 14 0.00049 29.0 4.3 67 58-140 3-82 (151)
128 3nq4_A 6,7-dimethyl-8-ribityll 54.5 28 0.00095 27.5 6.0 68 58-142 11-87 (156)
129 4e21_A 6-phosphogluconate dehy 54.2 46 0.0016 29.6 8.3 116 59-204 22-141 (358)
130 3l3b_A ES1 family protein; ssg 54.0 30 0.001 29.0 6.7 40 59-99 23-65 (242)
131 3ot1_A 4-methyl-5(B-hydroxyeth 52.8 10 0.00035 30.8 3.4 101 58-174 8-113 (208)
132 4eg0_A D-alanine--D-alanine li 52.7 39 0.0013 28.9 7.4 41 58-99 12-55 (317)
133 1n57_A Chaperone HSP31, protei 52.5 37 0.0013 29.2 7.1 40 59-99 48-99 (291)
134 2qv7_A Diacylglycerol kinase D 52.4 18 0.00062 31.6 5.2 39 59-98 24-64 (337)
135 2rk3_A Protein DJ-1; parkinson 52.4 14 0.00049 29.5 4.2 98 59-172 3-106 (197)
136 2x6q_A Trehalose-synthase TRET 52.2 18 0.00062 31.7 5.2 41 58-99 39-80 (416)
137 2gek_A Phosphatidylinositol ma 52.0 16 0.00054 31.7 4.8 44 56-100 17-63 (406)
138 3fro_A GLGA glycogen synthase; 51.2 13 0.00045 32.5 4.1 39 59-98 2-44 (439)
139 2ab0_A YAJL; DJ-1/THIJ superfa 51.2 14 0.00048 29.9 4.0 102 59-174 2-108 (205)
140 3lwz_A 3-dehydroquinate dehydr 50.7 14 0.00047 29.3 3.6 67 58-140 6-85 (153)
141 3c48_A Predicted glycosyltrans 50.3 12 0.00041 33.1 3.7 41 58-99 19-69 (438)
142 1o1y_A Conserved hypothetical 50.2 20 0.00067 29.9 4.8 55 58-136 11-65 (239)
143 4fzr_A SSFS6; structural genom 50.1 8.2 0.00028 34.0 2.6 41 56-98 12-52 (398)
144 4huj_A Uncharacterized protein 50.0 15 0.0005 30.0 4.0 78 59-154 23-101 (220)
145 3oes_A GTPase rhebl1; small GT 49.5 88 0.003 24.1 9.0 49 123-174 90-138 (201)
146 1wl8_A GMP synthase [glutamine 49.1 44 0.0015 26.3 6.7 31 62-98 3-33 (189)
147 4hcj_A THIJ/PFPI domain protei 48.9 18 0.00062 28.8 4.2 98 59-172 7-108 (177)
148 3otg_A CALG1; calicheamicin, T 48.9 9.7 0.00033 33.5 2.8 41 56-98 17-57 (412)
149 2vrn_A Protease I, DR1199; cys 48.7 36 0.0012 26.7 6.1 103 58-173 8-116 (190)
150 3dhn_A NAD-dependent epimerase 48.6 24 0.00083 28.1 5.1 72 59-139 4-78 (227)
151 3k96_A Glycerol-3-phosphate de 48.6 63 0.0021 28.6 8.2 85 58-155 28-120 (356)
152 2oil_A CATX-8, RAS-related pro 47.5 79 0.0027 24.1 7.9 47 123-173 92-138 (193)
153 2bcg_Y Protein YP2, GTP-bindin 46.9 97 0.0033 23.9 8.6 48 123-174 75-122 (206)
154 1w85_B Pyruvate dehydrogenase 46.8 28 0.00094 30.4 5.5 76 60-153 202-278 (324)
155 3se7_A VANA; alpha-beta struct 45.5 30 0.001 30.2 5.5 42 58-100 2-46 (346)
156 3mc3_A DSRE/DSRF-like family p 45.4 31 0.0011 26.0 4.9 41 58-99 14-56 (134)
157 1hqk_A 6,7-dimethyl-8-ribityll 45.2 33 0.0011 27.0 5.1 69 58-143 11-87 (154)
158 1rvv_A Riboflavin synthase; tr 44.6 33 0.0011 27.0 5.0 69 58-143 11-87 (154)
159 3q3j_B RHO-related GTP-binding 44.3 55 0.0019 25.9 6.6 45 124-173 94-139 (214)
160 2h17_A ADP-ribosylation factor 44.2 1E+02 0.0034 23.3 9.2 99 58-174 20-131 (181)
161 3l18_A Intracellular protease 43.9 24 0.00083 27.1 4.2 38 59-99 2-39 (168)
162 1c2y_A Protein (lumazine synth 43.6 19 0.00065 28.5 3.5 69 58-143 12-87 (156)
163 4bas_A ADP-ribosylation factor 43.4 58 0.002 24.9 6.5 51 124-174 82-136 (199)
164 3t1o_A Gliding protein MGLA; G 43.4 1E+02 0.0035 23.2 8.7 26 59-85 14-39 (198)
165 3f5d_A Protein YDEA; unknow pr 42.8 23 0.00079 28.8 4.0 97 59-173 3-101 (206)
166 3uk7_A Class I glutamine amido 42.6 19 0.00064 32.3 3.7 39 58-99 11-49 (396)
167 1gpm_A GMP synthetase, XMP ami 42.4 33 0.0011 32.2 5.6 33 59-98 7-40 (525)
168 1di0_A Lumazine synthase; tran 42.4 22 0.00076 28.1 3.7 67 58-141 9-83 (158)
169 2obx_A DMRL synthase 1, 6,7-di 42.4 25 0.00085 27.8 4.0 68 58-142 10-85 (157)
170 2ozl_B PDHE1-B, pyruvate dehyd 42.1 45 0.0015 29.4 6.1 76 60-153 217-293 (341)
171 3en0_A Cyanophycinase; serine 41.8 16 0.00054 31.8 3.0 61 59-136 56-118 (291)
172 2e2s_A Agelenin; cystine knot, 41.3 9.2 0.00031 22.3 0.9 10 5-14 1-10 (36)
173 3h5l_A Putative branched-chain 41.2 1.8E+02 0.0061 25.3 10.4 77 58-155 163-241 (419)
174 2cvz_A Dehydrogenase, 3-hydrox 40.5 1.2E+02 0.0042 25.0 8.5 64 124-203 51-115 (289)
175 3ggo_A Prephenate dehydrogenas 40.3 1.8E+02 0.006 25.0 12.1 72 58-140 32-106 (314)
176 3rsc_A CALG2; TDP, enediyne, s 40.3 15 0.00052 32.3 2.8 41 56-98 17-57 (415)
177 2h57_A ADP-ribosylation factor 40.2 1.2E+02 0.0041 23.0 8.5 109 58-174 20-135 (190)
178 3c24_A Putative oxidoreductase 38.8 39 0.0013 28.5 5.0 78 58-154 10-87 (286)
179 1w4r_A Thymidine kinase; type 38.8 46 0.0016 27.2 5.2 101 58-173 18-125 (195)
180 3soz_A ORF 245 protein, cytopl 38.7 19 0.00064 30.7 2.9 47 76-138 34-80 (248)
181 1zbd_A Rabphilin-3A; G protein 38.5 72 0.0025 24.6 6.4 47 124-174 76-122 (203)
182 4ffl_A PYLC; amino acid, biosy 38.5 35 0.0012 29.7 4.8 34 59-99 1-34 (363)
183 1umd_B E1-beta, 2-OXO acid deh 37.9 39 0.0013 29.4 5.0 76 60-153 203-279 (324)
184 1f0k_A MURG, UDP-N-acetylgluco 37.9 44 0.0015 28.4 5.3 38 60-99 7-44 (364)
185 1lss_A TRK system potassium up 37.4 20 0.00067 26.1 2.6 74 59-139 4-80 (140)
186 4eyg_A Twin-arginine transloca 37.1 1.6E+02 0.0055 24.8 8.9 34 58-93 138-171 (368)
187 3ups_A Iojap-like protein; PSI 37.1 55 0.0019 25.1 5.1 54 73-155 19-72 (136)
188 1jx7_A Hypothetical protein YC 37.0 32 0.0011 24.6 3.7 40 59-99 1-44 (117)
189 3g1w_A Sugar ABC transporter; 36.8 1.7E+02 0.0059 23.9 9.2 38 59-97 4-42 (305)
190 3llv_A Exopolyphosphatase-rela 36.7 19 0.00066 26.6 2.5 34 59-99 6-39 (141)
191 2h2w_A Homoserine O-succinyltr 36.5 89 0.003 27.4 7.0 89 56-154 44-143 (312)
192 3n8k_A 3-dehydroquinate dehydr 36.5 31 0.0011 27.7 3.6 68 60-143 29-110 (172)
193 2iw1_A Lipopolysaccharide core 36.3 24 0.00081 30.2 3.3 38 60-98 1-40 (374)
194 1rzu_A Glycogen synthase 1; gl 35.9 34 0.0012 30.6 4.5 38 60-98 1-43 (485)
195 1gwn_A RHO-related GTP-binding 35.7 88 0.003 24.6 6.5 45 124-173 95-140 (205)
196 3ia7_A CALG4; glycosysltransfe 35.2 31 0.0011 29.8 4.0 38 58-97 3-40 (402)
197 1t1v_A SH3BGRL3, SH3 domain-bi 35.0 56 0.0019 22.4 4.6 37 59-99 1-42 (93)
198 3cky_A 2-hydroxymethyl glutara 34.8 1.5E+02 0.0053 24.6 8.3 64 124-203 56-123 (301)
199 3qvo_A NMRA family protein; st 34.6 1.7E+02 0.0059 23.2 10.7 88 58-155 21-113 (236)
200 1vg8_A RAS-related protein RAB 34.6 92 0.0031 23.9 6.4 51 124-174 76-126 (207)
201 2iss_D Glutamine amidotransfer 34.5 76 0.0026 25.4 6.0 47 58-136 19-65 (208)
202 1iow_A DD-ligase, DDLB, D-ALA\ 34.4 39 0.0013 28.3 4.3 41 59-100 2-45 (306)
203 3noq_A THIJ/PFPI family protei 34.1 38 0.0013 28.0 4.1 87 59-154 5-93 (231)
204 2r60_A Glycosyl transferase, g 34.0 36 0.0012 30.7 4.3 40 59-99 7-60 (499)
205 3e8x_A Putative NAD-dependent 33.9 84 0.0029 25.0 6.2 75 58-140 20-96 (236)
206 1gpw_B Amidotransferase HISH; 33.6 55 0.0019 25.9 4.9 31 60-96 1-36 (201)
207 1gtz_A 3-dehydroquinate dehydr 33.6 30 0.001 27.4 3.1 67 58-140 5-84 (156)
208 2qzs_A Glycogen synthase; glyc 33.1 33 0.0011 30.7 3.9 38 60-98 1-43 (485)
209 2ew2_A 2-dehydropantoate 2-red 32.9 33 0.0011 28.9 3.6 24 126-155 72-95 (316)
210 2qs7_A Uncharacterized protein 32.9 60 0.002 24.7 4.8 41 58-99 6-46 (144)
211 2k8s_A Thioredoxin; dimer, str 32.9 1E+02 0.0035 20.0 6.0 36 63-99 4-40 (80)
212 3l6d_A Putative oxidoreductase 32.6 95 0.0033 26.4 6.6 118 58-204 8-127 (306)
213 2d1p_B TUSC, hypothetical UPF0 32.3 48 0.0016 24.3 4.0 39 59-99 1-42 (119)
214 1nbw_B Glycerol dehydratase re 32.0 38 0.0013 25.4 3.3 38 60-99 6-43 (117)
215 3k3p_A D-alanine--D-alanine li 31.9 60 0.0021 29.0 5.3 41 59-100 37-80 (383)
216 1e4e_A Vancomycin/teicoplanin 31.9 70 0.0024 27.6 5.7 40 59-99 3-45 (343)
217 3mos_A Transketolase, TK; thia 31.9 88 0.003 30.0 6.8 76 60-153 499-576 (616)
218 1ky3_A GTP-binding protein YPT 31.9 1.4E+02 0.0048 22.0 6.9 51 124-174 77-127 (182)
219 2khp_A Glutaredoxin; thioredox 31.5 74 0.0025 21.3 4.7 37 58-99 3-40 (92)
220 3tsa_A SPNG, NDP-rhamnosyltran 31.5 27 0.00091 30.4 2.8 37 59-97 1-37 (391)
221 1r2q_A RAS-related protein RAB 31.4 1.5E+02 0.0051 21.5 7.7 47 123-173 73-119 (170)
222 3tri_A Pyrroline-5-carboxylate 31.2 87 0.003 26.4 6.1 69 59-139 3-74 (280)
223 2bon_A Lipid kinase; DAG kinas 31.1 62 0.0021 28.1 5.2 38 59-98 29-66 (332)
224 1u0t_A Inorganic polyphosphate 31.0 43 0.0015 28.9 4.1 36 59-95 4-39 (307)
225 2l17_A Synarsc, arsenate reduc 31.0 33 0.0011 25.9 3.0 26 58-86 3-30 (134)
226 3clv_A RAB5 protein, putative; 31.0 1.7E+02 0.0057 21.9 7.9 71 123-200 111-181 (208)
227 3lvq_E ARF-GAP with SH3 domain 30.9 2.7E+02 0.0092 25.1 9.8 49 123-174 384-432 (497)
228 2il1_A RAB12; G-protein, GDP, 30.8 62 0.0021 24.9 4.7 47 123-173 93-139 (192)
229 3ic5_A Putative saccharopine d 30.5 48 0.0016 23.0 3.7 72 59-139 5-80 (118)
230 3qsg_A NAD-binding phosphogluc 30.5 2E+02 0.0069 24.4 8.4 70 58-140 23-95 (312)
231 3bc1_A RAS-related protein RAB 30.5 1.2E+02 0.0043 22.6 6.4 48 124-174 89-136 (195)
232 2f7s_A C25KG, RAS-related prot 30.2 34 0.0012 26.9 3.1 48 124-174 103-150 (217)
233 1f6b_A SAR1; gtpases, N-termin 30.1 1.9E+02 0.0064 22.3 7.9 48 124-174 88-135 (198)
234 1kjq_A GART 2, phosphoribosylg 30.1 71 0.0024 27.9 5.5 37 57-100 9-45 (391)
235 3iwt_A 178AA long hypothetical 29.9 79 0.0027 24.7 5.2 42 56-98 12-62 (178)
236 2ew1_A RAS-related protein RAB 29.7 1.4E+02 0.0047 23.4 6.7 46 124-173 94-139 (201)
237 2g5c_A Prephenate dehydrogenas 29.7 38 0.0013 28.3 3.4 70 59-139 1-73 (281)
238 1c6w_A Maurocalcin, MCA; scorp 29.7 15 0.00053 20.8 0.6 9 5-13 1-9 (33)
239 2fg5_A RAB-22B, RAS-related pr 29.6 1.8E+02 0.0063 22.0 9.0 48 123-174 90-137 (192)
240 2fgx_A Putative thioredoxin; N 29.6 69 0.0024 23.2 4.4 38 61-99 30-68 (107)
241 3h75_A Periplasmic sugar-bindi 29.5 1.5E+02 0.0053 25.0 7.5 40 59-99 3-44 (350)
242 2efe_B Small GTP-binding prote 29.5 1.7E+02 0.0058 21.6 9.7 74 123-200 79-152 (181)
243 3i12_A D-alanine-D-alanine lig 29.5 75 0.0026 27.9 5.5 41 59-100 3-46 (364)
244 2g2q_A Glutaredoxin-2; thiored 29.5 80 0.0027 23.8 4.7 35 59-98 1-36 (124)
245 3cpj_B GTP-binding protein YPT 29.4 2E+02 0.0069 22.5 7.8 47 123-173 80-126 (223)
246 1jvn_A Glutamine, bifunctional 29.3 41 0.0014 31.9 3.8 51 58-137 3-53 (555)
247 2fex_A Conserved hypothetical 29.3 15 0.00051 29.1 0.7 37 59-99 1-39 (188)
248 3fse_A Two-domain protein cont 29.2 63 0.0022 28.9 4.9 39 58-99 9-47 (365)
249 3lft_A Uncharacterized protein 29.0 81 0.0028 26.2 5.4 40 58-98 132-171 (295)
250 2bfd_B 2-oxoisovalerate dehydr 29.0 54 0.0019 28.8 4.4 76 60-153 220-297 (342)
251 2qh8_A Uncharacterized protein 29.0 94 0.0032 25.9 5.9 40 58-98 139-178 (302)
252 2raf_A Putative dinucleotide-b 28.9 1.1E+02 0.0037 24.4 6.0 60 58-154 18-77 (209)
253 3pef_A 6-phosphogluconate dehy 28.7 2E+02 0.0068 23.8 7.9 117 60-204 2-121 (287)
254 1zd9_A ADP-ribosylation factor 28.7 1.9E+02 0.0065 21.8 7.7 48 124-174 86-133 (188)
255 3k5i_A Phosphoribosyl-aminoimi 28.5 67 0.0023 28.7 5.0 32 60-99 25-56 (403)
256 2g6b_A RAS-related protein RAB 28.5 1.6E+02 0.0055 21.7 6.7 47 124-174 79-125 (180)
257 2b99_A Riboflavin synthase; lu 28.4 18 0.0006 28.7 0.9 39 59-100 2-42 (156)
258 3h2s_A Putative NADH-flavin re 28.4 82 0.0028 24.7 5.1 73 60-139 1-73 (224)
259 3dtt_A NADP oxidoreductase; st 28.4 68 0.0023 26.3 4.7 73 56-140 16-102 (245)
260 3q2o_A Phosphoribosylaminoimid 28.3 48 0.0016 29.2 4.0 35 58-99 13-47 (389)
261 1g16_A RAS-related protein SEC 28.2 1.3E+02 0.0044 21.9 6.0 48 123-174 70-117 (170)
262 3e5n_A D-alanine-D-alanine lig 28.2 80 0.0027 28.1 5.5 42 58-100 21-65 (386)
263 2dwc_A PH0318, 433AA long hypo 28.1 60 0.002 29.0 4.7 37 57-100 17-53 (433)
264 1a9x_B Carbamoyl phosphate syn 27.9 1.2E+02 0.004 27.3 6.5 32 59-98 190-221 (379)
265 1kz1_A 6,7-dimethyl-8-ribityll 27.8 88 0.003 24.7 5.0 69 58-142 16-92 (159)
266 3l6u_A ABC-type sugar transpor 27.7 2.4E+02 0.0082 22.7 9.7 41 58-99 7-48 (293)
267 2wja_A Putative acid phosphata 27.6 2.2E+02 0.0075 22.2 8.3 74 59-137 26-108 (168)
268 4ezb_A Uncharacterized conserv 27.6 2.8E+02 0.0097 23.5 10.1 114 58-203 23-146 (317)
269 2hy5_B Intracellular sulfur ox 27.6 1.6E+02 0.0055 22.1 6.4 41 58-99 4-46 (136)
270 3h4t_A Glycosyltransferase GTF 27.5 44 0.0015 29.5 3.6 37 60-98 1-37 (404)
271 4gzl_A RAS-related C3 botulinu 27.5 1.5E+02 0.0053 22.9 6.6 45 124-173 97-142 (204)
272 1z0j_A RAB-22, RAS-related pro 27.5 1.8E+02 0.006 21.1 7.4 48 123-174 73-120 (170)
273 4e4t_A Phosphoribosylaminoimid 27.4 82 0.0028 28.3 5.5 70 59-136 35-104 (419)
274 2bme_A RAB4A, RAS-related prot 27.4 1.9E+02 0.0065 21.5 7.0 46 124-173 78-123 (186)
275 2id1_A Hypothetical protein; a 27.3 76 0.0026 24.2 4.4 53 73-154 3-55 (130)
276 3gj0_A GTP-binding nuclear pro 26.9 1.2E+02 0.0042 23.7 6.0 46 123-173 82-127 (221)
277 2i87_A D-alanine-D-alanine lig 26.9 75 0.0026 27.7 5.0 40 59-99 3-45 (364)
278 3tqt_A D-alanine--D-alanine li 26.9 88 0.003 27.7 5.5 42 58-100 3-47 (372)
279 4amg_A Snogd; transferase, pol 26.9 34 0.0012 29.6 2.7 41 56-98 19-59 (400)
280 2ce2_X GTPase HRAS; signaling 26.6 1.8E+02 0.0061 20.8 7.9 48 124-174 70-117 (166)
281 1m2o_B GTP-binding protein SAR 26.5 2.1E+02 0.0073 21.7 8.9 48 124-174 86-133 (190)
282 2ywj_A Glutamine amidotransfer 26.3 77 0.0026 24.7 4.5 13 125-137 34-46 (186)
283 2o5a_A BH1328 protein; BHR21, 26.3 63 0.0021 24.4 3.7 54 73-155 3-56 (125)
284 2z04_A Phosphoribosylaminoimid 26.3 55 0.0019 28.4 4.0 34 59-99 1-34 (365)
285 2an1_A Putative kinase; struct 26.2 37 0.0013 28.9 2.7 36 59-95 5-40 (292)
286 3dz8_A RAS-related protein RAB 26.2 89 0.003 23.8 4.9 106 58-174 22-137 (191)
287 2ahr_A Putative pyrroline carb 26.2 77 0.0026 26.0 4.7 70 58-139 2-71 (259)
288 2p6p_A Glycosyl transferase; X 26.1 51 0.0017 28.5 3.7 37 60-98 1-37 (384)
289 1u6t_A SH3 domain-binding glut 26.0 88 0.003 23.4 4.5 34 62-99 1-40 (121)
290 3o47_A ADP-ribosylation factor 26.0 3E+02 0.01 23.5 8.8 49 123-174 227-275 (329)
291 1c1y_A RAS-related protein RAP 26.0 1.9E+02 0.0064 20.9 7.0 49 123-174 69-117 (167)
292 2vdj_A Homoserine O-succinyltr 25.9 1.4E+02 0.0048 25.9 6.4 89 56-154 32-131 (301)
293 2fek_A Low molecular weight pr 25.8 2.4E+02 0.0081 22.0 8.3 34 59-97 22-57 (167)
294 4dsu_A GTPase KRAS, isoform 2B 25.7 2E+02 0.007 21.2 8.0 49 123-174 70-118 (189)
295 3tkl_A RAS-related protein RAB 25.7 2.1E+02 0.0072 21.4 7.7 48 123-174 83-130 (196)
296 1x3s_A RAS-related protein RAB 25.6 2.1E+02 0.0072 21.3 7.7 49 123-174 82-130 (195)
297 1z2a_A RAS-related protein RAB 25.5 1.4E+02 0.0047 21.7 5.7 47 123-174 72-118 (168)
298 3mw8_A Uroporphyrinogen-III sy 25.4 15 0.00052 30.2 0.1 25 123-154 45-69 (240)
299 2orv_A Thymidine kinase; TP4A 25.0 1.1E+02 0.0038 25.6 5.4 91 57-154 16-112 (234)
300 3oy2_A Glycosyltransferase B73 24.9 1.1E+02 0.0038 26.4 5.8 38 60-99 1-40 (413)
301 2jmk_A Hypothetical protein TA 24.9 1.2E+02 0.0043 21.7 4.8 36 58-94 73-109 (111)
302 1sy7_A Catalase 1; heme oxidat 24.7 1.5E+02 0.0051 29.1 7.0 99 58-173 533-636 (715)
303 2b6h_A ADP-ribosylation factor 24.6 2.3E+02 0.008 21.5 7.2 49 123-174 91-139 (192)
304 3lvu_A ABC transporter, peripl 24.5 74 0.0025 26.0 4.3 38 60-98 128-165 (258)
305 1wms_A RAB-9, RAB9, RAS-relate 24.4 1.9E+02 0.0065 21.2 6.4 51 124-174 75-125 (177)
306 2g2c_A Putative molybdenum cof 24.4 63 0.0021 25.2 3.6 38 59-97 5-50 (167)
307 2bov_A RAla, RAS-related prote 24.1 2.3E+02 0.008 21.3 7.4 48 124-174 81-128 (206)
308 2iya_A OLEI, oleandomycin glyc 24.0 64 0.0022 28.3 4.0 39 58-98 11-49 (424)
309 3cph_A RAS-related protein SEC 24.0 2.3E+02 0.008 21.5 7.1 48 123-174 87-134 (213)
310 1vpd_A Tartronate semialdehyde 24.0 1.5E+02 0.0051 24.6 6.2 64 124-202 57-123 (299)
311 1jdp_A NPR-C, atrial natriuret 23.6 3.6E+02 0.012 23.4 9.0 91 59-174 154-247 (441)
312 2yjn_A ERYCIII, glycosyltransf 23.6 39 0.0013 30.2 2.5 40 58-99 19-58 (441)
313 2vns_A Metalloreductase steap3 23.3 55 0.0019 26.4 3.2 68 58-139 27-94 (215)
314 1jl3_A Arsenate reductase; alp 23.3 2.3E+02 0.0079 21.0 7.8 74 60-137 4-83 (139)
315 3r75_A Anthranilate/para-amino 23.2 2.6E+02 0.0089 26.9 8.3 53 59-140 446-499 (645)
316 2p5s_A RAS and EF-hand domain 23.0 1.2E+02 0.004 23.3 5.1 47 123-173 95-141 (199)
317 1r8s_A ADP-ribosylation factor 22.9 2.2E+02 0.0074 20.5 9.3 48 124-174 63-110 (164)
318 4etm_A LMPTP, low molecular we 22.9 43 0.0015 26.6 2.3 24 58-84 17-42 (173)
319 3l4b_C TRKA K+ channel protien 22.8 41 0.0014 27.0 2.3 73 60-139 1-76 (218)
320 3d54_D Phosphoribosylformylgly 22.6 76 0.0026 25.2 3.9 33 59-97 2-35 (213)
321 3ihw_A Centg3; RAS, centaurin, 22.5 2.5E+02 0.0086 21.2 7.3 47 125-174 82-128 (184)
322 3pam_A Transmembrane protein; 22.4 1.5E+02 0.0052 24.0 5.9 36 60-98 129-164 (259)
323 3q98_A Transcarbamylase; rossm 22.4 2.6E+02 0.0088 25.3 7.7 38 163-200 189-226 (399)
324 3cne_A Putative protease I; st 22.3 2.3E+02 0.0079 21.4 6.6 35 59-99 2-39 (175)
325 1ego_A Glutaredoxin; electron 22.3 78 0.0027 20.6 3.3 38 60-98 1-39 (85)
326 2iyf_A OLED, oleandomycin glyc 22.2 44 0.0015 29.4 2.5 38 59-98 7-44 (430)
327 2a33_A Hypothetical protein; s 22.1 59 0.002 26.8 3.1 34 58-92 12-48 (215)
328 3kkq_A RAS-related protein M-R 21.7 2.1E+02 0.0072 21.2 6.2 49 123-174 84-132 (183)
329 2o52_A RAS-related protein RAB 21.6 1.8E+02 0.0061 22.3 5.9 47 123-173 92-138 (200)
330 3tqi_A GMP synthase [glutamine 21.3 1.8E+02 0.006 27.2 6.6 31 60-97 11-42 (527)
331 1ehi_A LMDDL2, D-alanine:D-lac 21.3 88 0.003 27.5 4.3 40 59-99 3-46 (377)
332 2ct6_A SH3 domain-binding glut 21.1 1.6E+02 0.0053 20.9 5.0 41 58-99 6-48 (111)
333 2g1u_A Hypothetical protein TM 21.0 1.2E+02 0.0042 22.5 4.7 77 56-139 16-95 (155)
334 1uqw_A Putative binding protei 20.9 2E+02 0.0068 26.2 6.8 37 61-98 345-381 (509)
335 3e48_A Putative nucleoside-dip 20.8 3.4E+02 0.012 22.0 8.3 71 124-200 61-136 (289)
336 1uuy_A CNX1, molybdopterin bio 20.8 2.2E+02 0.0077 21.8 6.2 39 58-97 4-51 (167)
337 2vxo_A GMP synthase [glutamine 20.7 1.3E+02 0.0045 29.3 5.7 33 59-98 29-62 (697)
338 1q7r_A Predicted amidotransfer 20.6 1E+02 0.0035 24.9 4.3 47 58-136 22-68 (219)
339 3orq_A N5-carboxyaminoimidazol 20.6 1.2E+02 0.0043 26.5 5.2 36 58-100 11-46 (377)
340 1z06_A RAS-related protein RAB 20.6 2.4E+02 0.0081 21.1 6.4 48 124-174 89-136 (189)
341 2a9k_A RAS-related protein RAL 20.6 2.6E+02 0.0088 20.5 7.0 48 124-174 85-132 (187)
342 3qy9_A DHPR, dihydrodipicolina 20.6 3.6E+02 0.012 22.3 7.8 22 59-86 3-24 (243)
343 1y81_A Conserved hypothetical 20.6 2.4E+02 0.0081 21.0 6.1 109 58-202 13-122 (138)
344 4f11_A Gamma-aminobutyric acid 20.5 3.3E+02 0.011 23.6 8.1 88 58-175 153-243 (433)
345 2p4q_A 6-phosphogluconate dehy 20.5 2.4E+02 0.0081 26.1 7.3 110 76-203 21-134 (497)
346 3eeq_A Putative cobalamin bios 20.4 91 0.0031 27.6 4.1 56 59-137 8-63 (336)
347 1u8z_A RAS-related protein RAL 20.3 2.4E+02 0.0083 20.1 6.4 48 124-174 71-118 (168)
348 3ohs_X Trans-1,2-dihydrobenzen 20.2 2E+02 0.007 24.4 6.4 23 128-152 66-88 (334)
349 3reg_A RHO-like small GTPase; 20.1 2.2E+02 0.0075 21.5 6.1 47 123-174 89-136 (194)
No 1
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=100.00 E-value=1.5e-32 Score=231.41 Aligned_cols=194 Identities=38% Similarity=0.637 Sum_probs=146.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCc-ccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDI-PEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~-~~i~~~~l~~AD~II~Gs 136 (260)
.||||+|||+|++|||++||++|++++++ .|++++++++.+. +.+|..|..|.. +++ +....+++.+||+|||||
T Consensus 4 ~M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~aD~ii~gs 79 (200)
T 2a5l_A 4 SSPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDIP--AEGALYATLEDLKNCAGLALGS 79 (200)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC---------------CCBCCHHHHHTCSEEEEEE
T ss_pred CcceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhccccc--cccCchhhHHHHHHCCEEEEEc
Confidence 37899999999999999999999999998 8999999999987 677888877752 222 222368899999999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|+||+++|++||+|+|++..+|....|+||++++|+++|+..|+.+.++..+...|..+||.+++..+. .+.+ .+.+
T Consensus 80 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~--~~~~ 156 (200)
T 2a5l_A 80 PTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYS-EPAL--LETR 156 (200)
T ss_dssp ECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC------------
T ss_pred ChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCC-Cccc--cccc
Confidence 999999999999999999877765678999999999999876777778889999999999999987654 1111 1112
Q ss_pred CCCcccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 217 ~~g~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
.++.+|+...+.+ +++..|++++++.|+.+|++|++.+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~ 199 (200)
T 2a5l_A 157 GGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLG 199 (200)
T ss_dssp ---CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666555432 44567999999999999999999999876
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=100.00 E-value=4.7e-32 Score=227.96 Aligned_cols=194 Identities=46% Similarity=0.812 Sum_probs=155.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcC--CCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM--KVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~--~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
||||+|||+|++|||++||++|++++++..|++++++++.+. .++|..|. .|.. .+ +..+.+++.+||+|||||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~-~~--~~~~~~~l~~aD~ii~gs 76 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPET-MPPQLFEKAGGKTQ-TA--PVATPQELADYDAIIFGT 76 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCC-SCHHHHHHTTCCCC-CS--CBCCGGGGGGCSEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcccc-Cchhhhhhcccccc-cC--chhhHHHHHHCCEEEEEe
Confidence 789999999999999999999999997535899999999987 44565442 2321 11 112257899999999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|+||+++|++||+|+|++..+|....++||++++|+++|+. |+.+.++..+...|.++||.+++.++.. +.++....+
T Consensus 77 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~~~~~-~~~~~~~~~ 154 (198)
T 3b6i_A 77 PTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPIGYAA-QELFDVSQV 154 (198)
T ss_dssp EEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCCTTCS-GGGGCCSSC
T ss_pred ChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECCCCCc-ccccccccc
Confidence 99999999999999999987776567899999999999986 6777888999999999999999877642 122222234
Q ss_pred CCCcccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 217 ~~g~~~g~~~~~~-~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
+++.+||.+.+.+ +++..|++++++.|+.+|++|++.+++++
T Consensus 155 ~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~ 197 (198)
T 3b6i_A 155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLN 197 (198)
T ss_dssp CCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5777888776643 45568999999999999999999999876
No 3
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=6.7e-31 Score=221.49 Aligned_cols=193 Identities=41% Similarity=0.677 Sum_probs=153.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcC-CCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM-KVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~-~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.||||+|||+| +|||++||++|++++++ .|++++++++.+. .++|..|. .|.. +|.......+++.+||+|||||
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~-~d~~~~~~~~~l~~aD~ii~gs 78 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEE-AGAEVKIRRVRET-LPPEFQSRIPFDK-VKDIPEVTLDDMRWADGFAIGS 78 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHH-HSCEEEEEECCCC-SCGGGGTTCCGGG-STTSCBCCHHHHHHCSEEEEEE
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHh-CCCEEEEEehhHh-CChhhhhccCCCc-ccccccccHHHHHhCCEEEEEC
Confidence 47899999999 99999999999999988 8999999999988 77787764 2432 1111111267899999999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
|+||+++|++||+|+|++..+|....++||++++|+++|+..|+.+.++..+...|..+||.+++.++.. +.++. ..
T Consensus 79 P~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~~--~~ 155 (199)
T 2zki_A 79 PTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGI-PELFQ--TT 155 (199)
T ss_dssp ECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCS-THHHH--CS
T ss_pred CccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCC-ccccc--cc
Confidence 9999999999999999998777666799999999999998766666778889999999999999876541 11111 11
Q ss_pred CCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 217 RGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
.++.+|+.+.+.+. ..|++++++.|+.+|++|++.+++|++
T Consensus 156 ~~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~ 196 (199)
T 2zki_A 156 TGGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKC 196 (199)
T ss_dssp SSCCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556665444221 168999999999999999999998874
No 4
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.97 E-value=4.1e-31 Score=225.15 Aligned_cols=192 Identities=34% Similarity=0.480 Sum_probs=154.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCC--CCC---CCCCc-ccccHhhhhhcCE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMK--VPP---RDDDI-PEISAADLVEADG 131 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~--~~~---~~dd~-~~i~~~~l~~AD~ 131 (260)
.||||||||+|++|||++||+.|++++++ .|+++++++|.+. .++|..|.. |.. ..+++ ..+ .+++.+||+
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRET-APQDVIDGQDAWKANIEAMKDVPEAT-PADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCC-SCHHHHTTCHHHHHHHHHTTTSCBCC-HHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhc-CCCEEEEEecccc-ccchhhhcccccccccccccchhHHH-HHHHHHCCE
Confidence 48999999999999999999999999998 8999999999988 666765531 100 00133 233 688999999
Q ss_pred EEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccc
Q 024934 132 FLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMF 211 (260)
Q Consensus 132 II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~ 211 (260)
||||||+||+++|++||+|||++..+|....|+||++++|+++|+..++.+.++..+...+..+||.+++.++. ++.++
T Consensus 82 ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~-~~~~~ 160 (211)
T 1ydg_A 82 IVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYT-DEVIF 160 (211)
T ss_dssp EEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTC-SHHHH
T ss_pred EEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCC-Chhhc
Confidence 99999999999999999999999877766779999999999999876666778889999999999999987653 11111
Q ss_pred cccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 212 KMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 212 ~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
.+++++|+...+.+. ..|++++++.|+.+|++|++.++++++
T Consensus 161 ----~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~~ 202 (211)
T 1ydg_A 161 ----KSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLLE 202 (211)
T ss_dssp ----HTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 134566776554321 368999999999999999999998873
No 5
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.97 E-value=2.7e-30 Score=218.10 Aligned_cols=181 Identities=25% Similarity=0.320 Sum_probs=136.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|+||+|||+|++|||++||++|++++++ +.+++.+. +++++...+++.+||+||||||
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~------~~~~v~~~---------------~~~~~~~~~~l~~~D~ii~gsP 63 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEA------TLHAIDAE---------------GNLSEDGWAALDAADAIIFGTP 63 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCTT---------------SCCCHHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhh------cceEeeec---------------CCCCHhHHHHHHHCCEEEEEeC
Confidence 58999999999999999999999999976 34555442 2344312578999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCc--cccccc
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAG--MFKMDS 215 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~--~~~~~~ 215 (260)
+|+|++|++||+|+|++..+|....|+||++++|+++|++.|+++.++..+...|.++||.+++..+..+-. +-..+.
T Consensus 64 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~ 143 (193)
T 3d7n_A 64 TYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDA 143 (193)
T ss_dssp EETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECCCC--------------
T ss_pred ccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeCCccCcccccccccccC
Confidence 999999999999999998777777899999999999998767778899999999999999999987653210 000112
Q ss_pred cCCCcccccceecC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 216 IRGGSPYGAGVFAG-DG-TREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 216 ~~~g~~~g~~~~~~-~g-~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
.++|++||...+.+ ++ +..|++++++.|+.+|++|++++++|++
T Consensus 144 ~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~ 189 (193)
T 3d7n_A 144 NRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKS 189 (193)
T ss_dssp -----CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677666542 33 2238999999999999999999988763
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.95 E-value=3.3e-27 Score=198.08 Aligned_cols=165 Identities=31% Similarity=0.484 Sum_probs=133.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|+||+|||+|++|||+++|++|++++++..|++++++++.+. +.+++.+||+||||||
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~---------------------~~~~l~~aD~ii~gsP 61 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA---------------------TKEDVLWADGLAVGSP 61 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC---------------------CHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC---------------------CHHHHHhCCEEEEEeC
Confidence 4889999999999999999999999997534889999999763 2578899999999999
Q ss_pred ccCCCchHHHHHHHHHhcc-cccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccccc
Q 024934 138 TRYGCMAAQMKAFFDSTGM-LWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSI 216 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~-l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~ 216 (260)
+|++++|+.||+|+|++.. .| ..|+||++++|+++|++.|+.+.++..+...|..+||.+++.+...+...
T Consensus 62 ~y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~------ 133 (188)
T 2ark_A 62 TNMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGKKF------ 133 (188)
T ss_dssp CBTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEEEEEETTE------
T ss_pred ccCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCCCccccccc------
Confidence 9999999999999999864 33 36899999999998776777777788898889999999987543211110
Q ss_pred CCCcccccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 024934 217 RGGSPYGAGVFAGDGTREPS-ETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 217 ~~g~~~g~~~~~~~g~~~p~-e~~le~a~~~G~~la~~~~~l~ 258 (260)
...||... ...|+ +++++.|+.+|++|++.+++++
T Consensus 134 --~~~~g~~~-----~~~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 134 --TLHYGAVV-----AGEPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp --EESSSEEE-----ESSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cCCCccee-----ecCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233221 12588 9999999999999999998876
No 7
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.93 E-value=1.5e-25 Score=184.09 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+|||+|++|||++||+.|++++.+ .|++++++++.+. +..++ ..++.+||+||||||||
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~----------------~~~~~-~~~~~~~d~ii~Gspty 62 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVK-TGVAVEMVDLRAV----------------DPQEL-IEAVSSARGIVLGTPPS 62 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHH-TTCCEEEEETTTC----------------CHHHH-HHHHHHCSEEEEECCBS
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCC----------------CHHHH-HHHHHhCCEEEEEcCCc
Confidence 689999999999999999999999988 8999999999874 22333 56778999999999999
Q ss_pred CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCC
Q 024934 140 YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGG 219 (260)
Q Consensus 140 ~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g 219 (260)
+|.+|. +.|++++... .++||++++|+++||. |. ++..+.+.|..+|+.+++.++.
T Consensus 63 ~g~~p~--~~fl~~l~~~----~l~gk~v~~fgs~g~~-g~---a~~~l~~~l~~~G~~~v~~~~~-------------- 118 (161)
T 3hly_A 63 QPSEAV--ATALSTIFAA----AHNKQAIGLFDSYGGD-DE---PIDALLAQFRNLGLHTAFPPIR-------------- 118 (161)
T ss_dssp SCCHHH--HHHHHHHHHH----CCTTSEEEEECCCCSS-BC---CHHHHHHHHHHTTCEESSSCBC--------------
T ss_pred CCchhH--HHHHHHHHhh----hhCCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecCceE--------------
Confidence 987664 9999987532 5899999999999983 43 3577888888999999865432
Q ss_pred cccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 220 SPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 220 ~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
....|+++++++|+.+|++|++.+++.
T Consensus 119 -----------~~~~P~~~dl~~~~~~g~~la~~l~~~ 145 (161)
T 3hly_A 119 -----------VKDQPTEAIYQQCEESGTDLGQWLTRA 145 (161)
T ss_dssp -----------CCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----------EeeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 123699999999999999999988653
No 8
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.93 E-value=2.4e-25 Score=182.72 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=120.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.+||+|||+|++|||++||+.|++++.+ .|++++++++.+. ++..++ .+++.+||+|||||||
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------~~~~~~-~~~~~~~d~ii~Gspt 66 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITK-TGVGVDVVDLGAA---------------VDLQEL-RELVGRCTGLVIGMSP 66 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHH-TTCEEEEEESSSC---------------CCHHHH-HHHHHTEEEEEEECCB
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHH-CCCeEEEEECcCc---------------CCHHHH-HHHHHhCCEEEEEcCc
Confidence 5799999999999999999999999988 8999999999863 022333 5678899999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRG 218 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~ 218 (260)
|+|.+| ++.|++++... .++||++++|+++||. ++ ++..+.+.|..+|+.+++.++.
T Consensus 67 y~g~~p--~~~~l~~l~~~----~~~~k~va~fgs~g~~-~~---a~~~l~~~l~~~G~~~v~~~~~------------- 123 (159)
T 3fni_A 67 AASAAS--IQGALSTILGS----VNEKQAVGIFETGGGD-DE---PIDPLLSKFRNLGLTTAFPAIR------------- 123 (159)
T ss_dssp TTSHHH--HHHHHHHHHHH----CCTTSEEEEECCSSSC-BC---CHHHHHHHHHHTTCEESSSCBC-------------
T ss_pred CCCCcc--HHHHHHHHHhh----cccCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecCceE-------------
Confidence 999866 59999987532 5799999999999884 33 2567788888999999865432
Q ss_pred CcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 219 GSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 219 g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
....|+++++++|+.||++|++.+++-
T Consensus 124 ------------~~~~P~~~dl~~~~~~g~~la~~~~~~ 150 (159)
T 3fni_A 124 ------------IKQTPTENTYKLCEEAGTDLGQWVTRD 150 (159)
T ss_dssp ------------CSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------EEeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 123699999999999999999987653
No 9
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.93 E-value=1.2e-25 Score=195.87 Aligned_cols=168 Identities=14% Similarity=0.042 Sum_probs=134.3
Q ss_pred CCeEEEEEecCc--hhHHHHHHHHHHHccCCC-CceEEEEEcCCCCcHHHhhc-------CCCCCCC-CCcccccHhhhh
Q 024934 59 KLKIFIVFYSMY--GHVEGLAKRMKKGVDGVD-GVEGLLYRVPETLTREALDH-------MKVPPRD-DDIPEISAADLV 127 (260)
Q Consensus 59 m~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~-G~ev~li~l~~~~~~~~~~~-------~~~~~~~-dd~~~i~~~~l~ 127 (260)
||||||||+|++ |||++|++.+++++++ . |++++++++.+..+++|.+| ..|.... +++..+ .++|.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~-~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISS-RNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVI-KKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHH-HSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHH-hcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHH-HHHHH
Confidence 789999999985 9999999999999987 6 89999999999877777777 3454321 567666 78999
Q ss_pred hcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccC
Q 024934 128 EADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFG 207 (260)
Q Consensus 128 ~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~ 207 (260)
+||+|||+||+||+++|+.||+|||++...+....+.||++++|+++|+. | .+.++..+...|..+|+.+++....
T Consensus 79 ~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v~~~~~-- 154 (242)
T 1sqs_A 79 ESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQILHQVSI-- 154 (242)
T ss_dssp HCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEEEEEEE--
T ss_pred HCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeeeeEEEE--
Confidence 99999999999999999999999999965444446899999999999874 3 2345677888888899998864111
Q ss_pred CccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024934 208 AGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKK 256 (260)
Q Consensus 208 ~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~ 256 (260)
.. .++++.++.++.+|++|++.+++
T Consensus 155 -------------------~~-----~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 155 -------------------TN-----SLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp -------------------EG-----GGGGGHHHHHHHHHHHHHHHHTT
T ss_pred -------------------ec-----cCChHHHHHHHHHHHHHHHHHhc
Confidence 00 12336889999999999987754
No 10
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.92 E-value=4.1e-24 Score=187.42 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=136.7
Q ss_pred CCCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.|||||||++|+ .|||++|++++++++++ .|+++++++|.+.....+. ....+++..+ .++|.+||+|||+
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~idL~~~pl~~~d-----~~~~d~~~~l-~~~i~~AD~iI~~ 105 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVFDPSGLPLPDAA-----PVSHPKVQEL-RELSIWSEGQVWV 105 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEECCCTTCCCTTSS-----CTTSHHHHHH-HHHHHHCSEEEEE
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEEEhhcCCCCcCC-----CCCCHHHHHH-HHHHHHCCEEEEE
Confidence 589999999998 48999999999999988 8999999999986432111 0122345555 7899999999999
Q ss_pred ccccCCCchHHHHHHHHHhccccc-CCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWK-EGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMD 214 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~-~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~ 214 (260)
||+||+++|+.||+|||++...|. ...|+||++++++++|+. |+. .++..+...|..+||.+++..+.++
T Consensus 106 sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v~~~v~i~------- 176 (247)
T 2q62_A 106 SPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITIPNQSSVA------- 176 (247)
T ss_dssp EECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSCCEEES-------
T ss_pred eCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEeCCEEEEe-------
Confidence 999999999999999999976653 246899999999998874 443 4567888888999999987544321
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
..+. .+..+|. ..+++.++.++.++++|++.+++++.
T Consensus 177 -----~~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 213 (247)
T 2q62_A 177 -----KAFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRD 213 (247)
T ss_dssp -----SGGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----cchh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 1222232 35678889999999999999988764
No 11
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.92 E-value=6.4e-25 Score=185.53 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=132.5
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHH-ccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKG-VDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~-l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
||||+|||+|+ +|||+++|++++++ +.+ .|++++++++.+.....|.+| |.. .+++..+ .+++.+||+|||+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~-~g~~v~~~dl~~~~~~~~~~~--~~~-~~~~~~~-~~~i~~aD~ii~~ 76 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLAR-SDSQGRHIHVIDLDPKALLRG--DLS-NAKLKEA-VDATCNADGLIVA 76 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHH-SSEEEEEEEGGGSCHHHHHHT--CTT-SHHHHHH-HHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHH-CCCeEEEEEccccCchhhccc--ccC-cHHHHHH-HHHHHHCCEEEEE
Confidence 68999999997 79999999999999 987 799999999998777778776 322 3445555 6789999999999
Q ss_pred ccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHH-HHHHHHHhcCcEEecCccccCCcccccc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAW-TAITQLAHHGMLFVPIGYTFGAGMFKMD 214 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~-~l~~~l~~~gm~vV~~~~~~~~~~~~~~ 214 (260)
||+||+++|+.||+|+|++.. ..|+||++++|+++|+. |+. ..+. .+...|..+|+.+++.+..+.
T Consensus 77 sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~-~~~-~a~~~~l~~~l~~~g~~~v~~~v~~~------- 143 (197)
T 2vzf_A 77 TPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSP-AHV-LALDYGLRPVLHSMGVRHVVQSFFLV------- 143 (197)
T ss_dssp EECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSG-GGG-GHHHHTHHHHHHTTTCSEECCCEEEE-------
T ss_pred eCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCc-chh-hHHHHHHHHHHHHcCCEeccceEEEe-------
Confidence 999999999999999999852 36899999999997763 332 2343 577788889999987543311
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKK 256 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~ 256 (260)
...+. +..+|. .++++.+++++.+++++++.+++
T Consensus 144 ----~~~~~---~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~ 177 (197)
T 2vzf_A 144 ----QSQFS---VVDGKL-AVEDDVASQLNNAIDHFRLSLSS 177 (197)
T ss_dssp ----SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCC
T ss_pred ----chhhc---ccCCCC-cCCHHHHHHHHHHHHHHHHHHHh
Confidence 01111 112343 68999999999999999886644
No 12
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.91 E-value=7e-24 Score=188.72 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=137.7
Q ss_pred CCCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.||||||||+|+ .|+|+.|++++++++++ .|+++++++|.+.....+... ...+++.++ .++|.+||+|||+
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveiidL~dlpl~~~d~~----~~~d~v~~l-~e~I~~ADgiV~a 130 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIFDPSDLPLPDQVQS----DDHPAVKEL-RALSEWSEGQVWC 130 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTSGG----GCCHHHHHH-HHHHHHCSEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEEehhcCCCCccCcc----CCCHHHHHH-HHHHHHCCeEEEE
Confidence 589999999998 49999999999999988 899999999998744322111 123445555 7899999999999
Q ss_pred ccccCCCchHHHHHHHHHhccccc-CCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWK-EGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMD 214 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~-~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~ 214 (260)
||+||+++|+.||+|||++...|. ...|+||++++++++|+. |+. .++..+...|..+||.+++..+.+. .
T Consensus 131 SP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~~~v~v~-~----- 202 (279)
T 2fzv_A 131 SPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIPNQSSIA-K----- 202 (279)
T ss_dssp EEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSCCEEET-T-----
T ss_pred cCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeCCEEEEe-c-----
Confidence 999999999999999999976654 246899999999998874 443 4567888888999999987544321 0
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLCE 259 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~~ 259 (260)
.+. .+..+|. ..+++.++.++.++++|++.+++++.
T Consensus 203 ------~~~--~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 238 (279)
T 2fzv_A 203 ------AFQ--EFDAAGR-MKPSPYYDRIADVMEELVRFTALVRP 238 (279)
T ss_dssp ------GGG--TBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ------ccc--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 1222332 35678889999999999999988764
No 13
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.91 E-value=4.4e-24 Score=179.42 Aligned_cols=178 Identities=14% Similarity=0.099 Sum_probs=127.9
Q ss_pred CCCeEEEEEecCc--hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.+|||||||+|++ |||+++|++++++++ .|+++++++|.+. | .|..|..|....+++..+ .+++.+||+|||+
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~--~g~~v~~~dl~~~-p-~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~~ 79 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP--PGMSIELADISGI-P-LYNEDVYALGFPPAVERF-REQIRAADALLFA 79 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC--TTCEEEECCCTTC-C-CCCHHHHTTCCCHHHHHH-HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc--CCCeEEEEeHHHC-C-CCCccccccCCCHHHHHH-HHHHHhCCEEEEE
Confidence 3579999999985 999999999999997 4899999999884 2 132332222333455555 6899999999999
Q ss_pred ccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC-ccccCCcccccc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI-GYTFGAGMFKMD 214 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~-~~~~~~~~~~~~ 214 (260)
||+||+++|+.||+|+|++...|. ..|+||++++|+++|+..|+ ..++..+...|..+|+.+++. .+.+. .
T Consensus 80 sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~~~~~~~-~----- 151 (193)
T 1rtt_A 80 TPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNKPEVMIS-S----- 151 (193)
T ss_dssp CCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCSSCEEEC-S-----
T ss_pred ccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCCCeEEec-c-----
Confidence 999999999999999999875433 46899999999999654554 345678888888899999874 33211 0
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
. . ..+..++. ..+++..++++.+++++++.+.+.
T Consensus 152 -----~-~--~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~ 185 (193)
T 1rtt_A 152 -----A-Q--NAFDAQGR-LLDDKARELIQQQLQALQLWVREG 185 (193)
T ss_dssp -----G-G--GTBCSTTC-BCCHHHHHHHHHHHHHHHC-----
T ss_pred -----h-H--hhcCcCCC-cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 01211232 357888899999999998877654
No 14
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.90 E-value=1.4e-24 Score=180.13 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=111.1
Q ss_pred CCCeEEEEEecCc--hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC----CCCCcccccHhhhhhcCE
Q 024934 58 TKLKIFIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP----RDDDIPEISAADLVEADG 131 (260)
Q Consensus 58 ~m~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~----~~dd~~~i~~~~l~~AD~ 131 (260)
.||||||||+|++ |||++|++.+++++ +++.++|.+..+++|.+|..|.. ..+++..+ .+++.+||+
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ 74 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSI-IERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT------CCEEEEC-----------------------CHHHH-HHHHHTCSE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHH-HHHHHhCCE
Confidence 4789999999975 99999999999876 35788998887888888765532 23455555 688999999
Q ss_pred EEEEccccCCCchHHHHHHHHHhcccccC-------CCCCCCcEEEEEeeCCCC--CChHHHHHHHHHHHHhcCcEEecC
Q 024934 132 FLFGFPTRYGCMAAQMKAFFDSTGMLWKE-------GKLVGKPAGFFVSTGTQG--GGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 132 II~GsPtY~g~~~~~mK~flD~~~~l~~~-------~~l~gK~~~if~s~G~~~--Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
|||+||+||+++|+.||+|+|++...+.. ..++||++++|+++|+.. ++ ...+..+...+..+||.+++.
T Consensus 75 ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~-~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKG-LPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHT-HHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccch-HHHHHHHHHHHHHcCCccceE
Confidence 99999999999999999999998643321 247899999999988731 22 335677888888899998863
Q ss_pred ccccCCccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 203 GYTFGAGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 203 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
.+.. +.. .+...++++.+++|+.+|++++.
T Consensus 154 ~~~~------------g~~--------~~~~~~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 154 VLGE------------GNR--------PGDILRDHQALSAASRLLKRSDA 183 (184)
T ss_dssp EEEE------------CSS--------TTGGGGCHHHHHHHHHTTCCCCC
T ss_pred EEEc------------cCC--------cchhhcCHHHHHHHHHhhhhccc
Confidence 2110 000 12224589999999999988763
No 15
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.90 E-value=1.5e-23 Score=166.82 Aligned_cols=135 Identities=22% Similarity=0.314 Sum_probs=114.1
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYG 141 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g 141 (260)
|+|+|+|++|||+++|+.|++++++ .|++++++++.+. +.+++.++|.||||+|||++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~iiig~pty~~ 58 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIE-SGKDVNTINVSDV---------------------NIDELLNEDILILGCSAMTD 58 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHH-TTCCCEEEEGGGC---------------------CHHHHTTCSEEEEEECCBTT
T ss_pred CEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEEhhhC---------------------CHHHHhhCCEEEEEcCccCC
Confidence 6899999999999999999999998 8999999999763 25678999999999999999
Q ss_pred CchH--HHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCC
Q 024934 142 CMAA--QMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGG 219 (260)
Q Consensus 142 ~~~~--~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g 219 (260)
++++ .++.|++++.. .++||++++|+++||. ++ .++..+.+.|..+|+.+++.++.
T Consensus 59 g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~-~~--~a~~~l~~~l~~~G~~~v~~~~~-------------- 116 (138)
T 5nul_A 59 EVLEESEFEPFIEEIST-----KISGKKVALFGSYGWG-DG--KWMRDFEERMNGYGCVVVETPLI-------------- 116 (138)
T ss_dssp TBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSS-CS--HHHHHHHHHHHHTTCEECSCCEE--------------
T ss_pred CCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCC-CC--hHHHHHHHHHHHCCCEEECCceE--------------
Confidence 8654 79999999853 2899999999999984 22 35688899999999999865432
Q ss_pred cccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 220 SPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 220 ~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
. +..|++++ ++|+.+|++|++
T Consensus 117 -------~----~~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 117 -------V----QNEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp -------E----ESSCGGGH-HHHHHHHHHHHT
T ss_pred -------E----ecCCCHHH-HHHHHHHHHHhc
Confidence 1 12699999 999999999975
No 16
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.90 E-value=3.1e-23 Score=175.23 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=130.3
Q ss_pred CCCCeEEEEEecC--chhHHHHHHHHHH----HccCCC--CceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhh
Q 024934 57 ITKLKIFIVFYSM--YGHVEGLAKRMKK----GVDGVD--GVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVE 128 (260)
Q Consensus 57 ~~m~KVlIIy~S~--~GnT~~lA~~i~~----~l~~~~--G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~ 128 (260)
.+|.||++|++|+ .|+|+++++++++ .+++ . |+++++++|.+..++.|.+|..|. ..+++..+ .++|.+
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~-~~~g~eve~idL~d~~l~~~~~~~~~~-~~~~~~~~-~~~i~~ 85 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSA-RGEALSVSTIELSELIPDLMTAMTTRV-HTTKLEEI-TSALSA 85 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEEGGGCHHHHTTTTSSSC-CCHHHHHH-HHHHHH
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHh-cCCCceEEEEEHHhCCCcccChhhcCC-CCHHHHHH-HHHHHH
Confidence 3799999999997 6899999999999 5654 4 899999999998777787776443 23556666 789999
Q ss_pred cCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHH-HHHHHHhcCcEEecCccccC
Q 024934 129 ADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWT-AITQLAHHGMLFVPIGYTFG 207 (260)
Q Consensus 129 AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~-l~~~l~~~gm~vV~~~~~~~ 207 (260)
||+|||+||+||+++|++||+|||++.. ..|.||++++++++|+.+ +.. .+.. +...|..+||.+++....+.
T Consensus 86 AD~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~-~~~-~~~~~L~~il~~lg~~vv~~~v~~~ 159 (191)
T 3k1y_A 86 SDGLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSAR-HSL-VLDYALRPLLSYMRAVVVPTGVFAA 159 (191)
T ss_dssp CSEEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSST-TTT-HHHHTHHHHHHHTTCEECSCCEEEE
T ss_pred CCEEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcc-hhh-HHHHHHHHHHHHCCCEEcCcEEEec
Confidence 9999999999999999999999999863 478999999999987743 332 2233 67777888999997644321
Q ss_pred CccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 208 AGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 208 ~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
.. .+. ++ .+++..+.++.++++++..+.+-
T Consensus 160 ~~----------------~f~-~~---~~~~~~~rl~~~~~~~~~~~~~~ 189 (191)
T 3k1y_A 160 TE----------------DFG-GP---EGAEFNKRIARAAGELASLIVEE 189 (191)
T ss_dssp GG----------------GCS-HH---HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hh----------------hcC-CC---CCHHHHHHHHHHHHHHHHHHHhc
Confidence 00 111 01 14666777888888888777653
No 17
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.90 E-value=1.1e-23 Score=174.37 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=125.1
Q ss_pred CeEEEEEecCc--hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 60 LKIFIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 60 ~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
|||+|||+|++ |||+++++.+++.++. +++++.+...+.|..|..|.. .+++..+ .+++.+||+|||+||
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~------~~i~l~~~~lp~~~~~~~~~~-~~~~~~~-~~~i~~aD~ii~~tP 72 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT------DLIDLSEFVLPVFNGEAEQSE-LLKVQEL-KQRVTKADAIVLLSP 72 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC------EEEETTTSCCCCCCCCHHHHT-CHHHHHH-HHHHHHCSSEEEEEE
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc------eEEeeecCCCCCCCChhhccC-cHHHHHH-HHHHHHCCEEEEEcC
Confidence 68999999987 9999999999999965 578887765544544443322 2455555 789999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
+||+++|+.||+|+|++... .|+||++++|+++|+..|+ ..++..+...|..+||.+++....+...
T Consensus 73 ~y~~~~p~~lk~~lD~l~~~----~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v~~~v~i~~~-------- 139 (174)
T 3gfs_A 73 EYHSGMSGALKNALDFLSSE----QFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVIPKQLVLKPV-------- 139 (174)
T ss_dssp CSSSSCCHHHHHHHHTCCHH----HHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEEEEEEEECGG--------
T ss_pred CcCCCCCHHHHHHHHHhCHh----hhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEecceEEechh--------
Confidence 99999999999999988642 5789999999977654454 3456788888889999999864432111
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKK 256 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~ 256 (260)
.++. ....++++..+.++.+++++++.+++
T Consensus 140 --------~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~ 169 (174)
T 3gfs_A 140 --------HIDV-ENATVAENIKESIKELVEELSMFAKA 169 (174)
T ss_dssp --------GEET-TTTEECHHHHHHHHHHHHHHHHHHHC
T ss_pred --------hcCC-CCCccCHHHHHHHHHHHHHHHHHHHc
Confidence 1221 11357789999999999999988764
No 18
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.90 E-value=4.7e-23 Score=165.81 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=115.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh-hcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLV-EADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~-~AD~II~GsP 137 (260)
|+||+|||+|++|||+++|+.|++++.+ .|++++++++.+. +.+++. ++|.||||+|
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~~d~ii~g~p 58 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAA-GGHEVTLLNAADA---------------------SAENLADGYDAVLFGCS 58 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTB---------------------CCTTTTTTCSEEEEEEC
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEehhhC---------------------CHhHhcccCCEEEEEec
Confidence 7899999999999999999999999998 8999999999864 134566 9999999999
Q ss_pred ccC---CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccc
Q 024934 138 TRY---GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMD 214 (260)
Q Consensus 138 tY~---g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~ 214 (260)
||+ |.+|+.++.|++++.. ..++||++++|+++....++...++..+...|..+|+.++..+..
T Consensus 59 ty~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~--------- 125 (148)
T 3f6r_A 59 AWGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLK--------- 125 (148)
T ss_dssp EECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEE---------
T ss_pred ccCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceE---------
Confidence 999 6999999999998753 258999999999843222222335678888999999998864332
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~ 253 (260)
+ ...|++ +++.++.++++|++.
T Consensus 126 ------------~----~~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 126 ------------M----EGDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp ------------E----ESSGGG-CHHHHHHHHHHHHHT
T ss_pred ------------e----ecCcch-HHHHHHHHHHHHHhh
Confidence 1 125888 999999999998763
No 19
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.89 E-value=3.2e-23 Score=174.83 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=129.0
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
|+|||||++|+ .|+|++++++++++++ .|+++++++|.+. |.. .....|. ..+++..+ .+++.+||+|||+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~--~~~~v~~~dl~~l-p~~-~~~~~~~-~~~~~~~~-~~~i~~AD~iV~~s 75 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG--DRAQVSYLSYDRV-PFF-NQDLETS-VHPEVAHA-REEVQEADAIWIFS 75 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT--TSSEEEECCCSSC-CCC-CGGGTTS-CCHHHHHH-HHHHHHCSEEEEEC
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC--CCCEEEEEeCccC-CCC-CcccccC-CcHHHHHH-HHHHHhCCEEEEEC
Confidence 78999999997 6899999999999996 4899999999874 311 1111232 23455555 78999999999999
Q ss_pred cccCCCchHHHHHHHHHhccccc------CCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcc
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWK------EGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGM 210 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~------~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~ 210 (260)
|+||+++|+.||+|+|++...+. ...|+||++++++++|+. |+ ...+..+...|..+||.+++......
T Consensus 76 P~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g~-~~~~~~l~~~l~~~G~~~v~~~v~~~--- 150 (192)
T 3fvw_A 76 PVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-SP-EEVFEDYRSLLPFIRMHLVDQLTGVP--- 150 (192)
T ss_dssp CCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEEC---
T ss_pred cccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-ch-hHHHHHHHHHHHHcCCeeecceeecc---
Confidence 99999999999999999975431 246899999999998873 32 33456778888889999998533210
Q ss_pred ccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 211 FKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 211 ~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
+....+. +|...++++..+.++.+.+++.+.+.+|.
T Consensus 151 -----------~~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (192)
T 3fvw_A 151 -----------INSEAWS-TGILKVSAEKLAELSAQADALLSAIENLE 186 (192)
T ss_dssp -----------CCTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred -----------cchhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0011122 34445789999999999999988776553
No 20
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.89 E-value=2.8e-22 Score=186.29 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=125.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|+||+|||+|++|||+++|+.|++++.+ .|++++++++.+.. +..+ .+++.+||+||||||
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~-~g~~v~~~~l~~~~----------------~~~~-~~~l~~~D~iiigsP 316 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARS-TGCETVLLEMTSSD----------------ITKV-ALHTYDSGAVAFASP 316 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGCC----------------HHHH-HHHHHTCSEEEEECC
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEEcCcCC----------------HHHH-HHHHHhCCEEEEEcC
Confidence 48999999999999999999999999988 79999999997642 2223 568999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHh-cCcEEecCc-cccCCcccccc
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAH-HGMLFVPIG-YTFGAGMFKMD 214 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~-~gm~vV~~~-~~~~~~~~~~~ 214 (260)
+|++++++.+|+|+|++... .+ +||++++|+++|+. ++ +...+...|.. +|+.+++.+ +.
T Consensus 317 ~y~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~-~~---a~~~l~~~l~~~~g~~~~~~~~~~--------- 379 (414)
T 2q9u_A 317 TLNNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWS-NR---AVPDIVAELRDGCKADVYDEKGIT--------- 379 (414)
T ss_dssp CBTTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSS-CC---HHHHHHHHHHHTSCCBCCCSSCEE---------
T ss_pred ccCcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCC-ch---hHHHHHHHHHhhcCcEEccCccEE---------
Confidence 99999999999999998654 35 89999999999884 43 34567778888 899887643 22
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
. ...|++++++.|+.+|+++++.+++++
T Consensus 380 ------------~----~~~p~~~~~~~~~~~g~~l~~~~~~~~ 407 (414)
T 2q9u_A 380 ------------F----KFNYTEELLEQAYNAGVDLGKRAIAYC 407 (414)
T ss_dssp ------------E----ESCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------E----eeCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 125899999999999999999888776
No 21
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.88 E-value=4.5e-22 Score=169.02 Aligned_cols=178 Identities=14% Similarity=0.113 Sum_probs=131.5
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEE-EEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGL-LYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~-li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
+|||++|++|+ .|+|+.+++++++.+. .|++++ +++|.+. |..+.....|. ..+++..+ .++|.+||+|||+
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~--~g~~v~~~idL~~l-P~~~~~~~~~~-~~~~~~~~-~~~i~~AD~iVi~ 80 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAP--EGIAITPLGSIGTF-PHYSQDVQEEG-FPAPVLTM-AQQIATADAVVIV 80 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCC--TTEEEEECCCGGGS-CCCCHHHHHHC-CCHHHHHH-HHHHHHSSEEEEE
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHcc--CCCEEEEEEehhhc-CCCCccccccC-CCHHHHHH-HHHHHhCCEEEEE
Confidence 47999999996 5899999999999996 489999 9999874 32111111121 12445555 7899999999999
Q ss_pred ccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc-cccCCcccccc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG-YTFGAGMFKMD 214 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~-~~~~~~~~~~~ 214 (260)
||+||+++|+.||+|+|++.. +....|.||++++++++|+..|+. .+...+...|..+|+.+++.+ +.+.
T Consensus 81 tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~~~~v~i~------- 151 (199)
T 4hs4_A 81 TPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLNRPEAMIG------- 151 (199)
T ss_dssp ECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECCSSCEEEC-------
T ss_pred cCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcCCCeEEee-------
Confidence 999999999999999999875 233578999999999987655554 456778888889999999742 2211
Q ss_pred ccCCCcccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 215 SIRGGSPYGAGVFAGD-GTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~-g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
.. ...|+.+ |. ..+++..+.++.+.+++++.++++.
T Consensus 152 -----~~--~~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~ 188 (199)
T 4hs4_A 152 -----QV--TGKVDAQTLE-LSDVATREFLARQLDALAALARTLS 188 (199)
T ss_dssp -----SG--GGTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----ch--hhhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0113222 43 3478889999999999999988765
No 22
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.88 E-value=4.3e-22 Score=157.38 Aligned_cols=134 Identities=22% Similarity=0.286 Sum_probs=110.8
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
.|+|||+|++|||+++|+.|++++++ .|++++++++.+. +.+++.+||.||||+|+|+
T Consensus 1 ~i~iiy~S~tGnT~~~a~~i~~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~vi~g~p~y~ 58 (137)
T 2fz5_A 1 MVEIVYWSGTGNTEAMANEIEAAVKA-AGADVESVRFEDT---------------------NVDDVASKDVILLGCPAMG 58 (137)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHH-TTCCEEEEETTSC---------------------CHHHHHTCSEEEEECCCBT
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHh-CCCeEEEEEcccC---------------------CHHHHhcCCEEEEEccccC
Confidence 37999999999999999999999988 8999999998763 2467899999999999999
Q ss_pred CCchHH--HHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCC
Q 024934 141 GCMAAQ--MKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRG 218 (260)
Q Consensus 141 g~~~~~--mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~ 218 (260)
+++++. +++|+|++.. .++||++++|+++|+..+ .++..+...|..+|+.+++ .+.
T Consensus 59 ~~~~~~~~~~~fl~~l~~-----~l~~k~~~~~~t~g~~~~---~~~~~l~~~l~~~g~~~~~-~~~------------- 116 (137)
T 2fz5_A 59 SEELEDSVVEPFFTDLAP-----KLKGKKVGLFGSYGWGSG---EWMDAWKQRTEDTGATVIG-TAI------------- 116 (137)
T ss_dssp TTBCCHHHHHHHHHHHGG-----GCSSCEEEEEEEESSCCS---HHHHHHHHHHHHTTCEEEE-EEE-------------
T ss_pred CCCCCHHHHHHHHHHhhh-----hcCCCEEEEEEecCCCCc---hHHHHHHHHHHHCCCEEcC-cEE-------------
Confidence 999998 9999999742 589999999999987422 3567888888889999883 222
Q ss_pred CcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 219 GSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 219 g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
.. + .|++ +++++.+|++|++
T Consensus 117 --------~~--g--~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 117 --------VN--E--MPDN--APECKELGEAAAK 136 (137)
T ss_dssp --------EE--S--SSSS--CTHHHHHHHHHHT
T ss_pred --------Ee--e--CCCh--HHHHHHHHHHHhc
Confidence 10 1 3554 9999999998864
No 23
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.88 E-value=9e-23 Score=173.04 Aligned_cols=171 Identities=16% Similarity=0.087 Sum_probs=121.5
Q ss_pred CCeEEEEEecCc----hhHHHHHHHHHHHccCCCC--ceEEEEEcC--CCCcHHHhhcCC-------------CCC----
Q 024934 59 KLKIFIVFYSMY----GHVEGLAKRMKKGVDGVDG--VEGLLYRVP--ETLTREALDHMK-------------VPP---- 113 (260)
Q Consensus 59 m~KVlIIy~S~~----GnT~~lA~~i~~~l~~~~G--~ev~li~l~--~~~~~~~~~~~~-------------~~~---- 113 (260)
||||||||+|++ |||++|++.+++++++ .| +++++++|. +..++.|.+|.. |..
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~-~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRE-TNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQ 79 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHH
Confidence 789999999985 8999999999999987 66 999999999 765454543311 221
Q ss_pred -CCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc---c------cCCCCCCCcEEEEEeeCCCCCChHH
Q 024934 114 -RDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML---W------KEGKLVGKPAGFFVSTGTQGGGQET 183 (260)
Q Consensus 114 -~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l---~------~~~~l~gK~~~if~s~G~~~Gg~e~ 183 (260)
..|++..+ .++|.+||+|||+||+||+++|+.||+|||++... + ....|+||++++|+++|+..++.+.
T Consensus 80 ~~~~~~~~~-~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~ 158 (208)
T 2hpv_A 80 QKVARFNEL-TDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDF 158 (208)
T ss_dssp HHHHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSH
T ss_pred hhHHHHHHH-HHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcch
Confidence 12344455 68899999999999999999999999999998631 1 1135899999999998875443233
Q ss_pred HHHHHHHHHHhcCcEEecCccccCCccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 184 TAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 184 ~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
....+...+...|+.+++.-+.. +.. .+. ...++.+++|+.+++++++
T Consensus 159 ~~~~l~~~~~~~G~~~~~~~~~~----------------~~~----~~~-~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 159 ASQYIKAILNFIGVDQVDGLFIE----------------GID----HFP-DRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEE----------------CTT----TCG-GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeeeEEEEc----------------ccc----CCH-HHHHHHHHHHHHHHHHHHh
Confidence 44556667788898877531110 100 010 1245677888888888875
No 24
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.87 E-value=1.5e-22 Score=169.57 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=108.3
Q ss_pred CeEEEEEecCc--hhHHHHHHHHHHHccCCC------CceEEEEEcCCCCcHHHhhcCCCCC---------CCCCccccc
Q 024934 60 LKIFIVFYSMY--GHVEGLAKRMKKGVDGVD------GVEGLLYRVPETLTREALDHMKVPP---------RDDDIPEIS 122 (260)
Q Consensus 60 ~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~------G~ev~li~l~~~~~~~~~~~~~~~~---------~~dd~~~i~ 122 (260)
|||||||+|++ |||++|++++++++++ . |+++++++|.+...+.|.+|..|.. .+|++..+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~-~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIEN-SEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSW- 78 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHT-CTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHH-
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHH-hhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHH-
Confidence 69999999986 9999999999999987 4 7999999999866667777665532 23334444
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
.+++.+||+|||+||+||+++|+.||+|+|++.. .|+||++++|++ |+. ++ ..++..+...|..+||.+++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~-~~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGH-GG-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETT-TT-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCc-ch-hhHHHHHHHHHHHCCCEEcc
Confidence 6889999999999999999999999999999853 588999998865 553 33 34567888888999999987
No 25
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.87 E-value=3.9e-22 Score=167.41 Aligned_cols=142 Identities=18% Similarity=0.120 Sum_probs=105.5
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccCCCC--ceEEEEEcCCCCcHHHhhcC-----CCCCC-----CCC---ccc
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDG--VEGLLYRVPETLTREALDHM-----KVPPR-----DDD---IPE 120 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G--~ev~li~l~~~~~~~~~~~~-----~~~~~-----~dd---~~~ 120 (260)
||||||||+|++ |||++|++.+++++++ .| +++++++|.+...+.|..|. .|... .|+ +..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~-~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 79 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWRE-KHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDE 79 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHH-HCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHH-hCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 789999999986 8999999999999987 55 89999999987444444332 22211 011 223
Q ss_pred ccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-cc--------CCCCCCCcEEEEEeeCCCCCCh--HHHHHHHH
Q 024934 121 ISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-WK--------EGKLVGKPAGFFVSTGTQGGGQ--ETTAWTAI 189 (260)
Q Consensus 121 i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-~~--------~~~l~gK~~~if~s~G~~~Gg~--e~~l~~l~ 189 (260)
+ .++|.+||+|||+||+||+++|+.||+|+|++... |. ...|+||++++|+++|+..++. +.....+.
T Consensus 80 ~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~ 158 (201)
T 1t5b_A 80 L-IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLK 158 (201)
T ss_dssp H-HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHH
T ss_pred H-HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHH
Confidence 3 57899999999999999999999999999998632 10 1358999999999988753331 22445667
Q ss_pred HHHHhcCcEEecC
Q 024934 190 TQLAHHGMLFVPI 202 (260)
Q Consensus 190 ~~l~~~gm~vV~~ 202 (260)
..|...|+.+++.
T Consensus 159 ~~l~~~G~~~~~~ 171 (201)
T 1t5b_A 159 VFLGFIGITDVNF 171 (201)
T ss_dssp HHHHHTTCCCEEE
T ss_pred HHHhhcCcceeEE
Confidence 7778889887753
No 26
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.87 E-value=3.6e-22 Score=160.27 Aligned_cols=141 Identities=20% Similarity=0.148 Sum_probs=113.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhh-cCEEEEEccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVE-ADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~-AD~II~GsPt 138 (260)
|||+|||+|++|||+++|+.|++++.+ .|++++++++.+.. .+++.+ +|.|||++|+
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~-~g~~v~~~~~~~~~---------------------~~~l~~~~d~ii~~~p~ 58 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELAD-AGYEVDSRDAASVE---------------------AGGLFEGFDLVLLGCST 58 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHH-HTCEEEEEEGGGCC---------------------STTTTTTCSEEEEEECE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHh-cCCeeEEEehhhCC---------------------HHHhcCcCCEEEEEeCC
Confidence 699999999999999999999999987 79999999987631 245678 9999999999
Q ss_pred cC-CC--chHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccc
Q 024934 139 RY-GC--MAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDS 215 (260)
Q Consensus 139 Y~-g~--~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~ 215 (260)
|+ |. +|..++.|+|++.. ..++||++++|++++...++...++..+...|..+|+.+++.++.
T Consensus 59 y~~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~---------- 124 (147)
T 1f4p_A 59 WGDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLR---------- 124 (147)
T ss_dssp ECSSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE----------
T ss_pred CCCCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccc----------
Confidence 94 67 79999999999753 268899999999965433334456788889999999988764322
Q ss_pred cCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 216 IRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 216 ~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
+ ++ .|++ +++.++.++++|++
T Consensus 125 -----------~--~~--~p~~-~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 125 -----------I--DG--DPRA-ARDDIVGWAHDVRG 145 (147)
T ss_dssp -----------E--ES--CGGG-GHHHHHHHHHHHHT
T ss_pred -----------c--cc--Cchh-HHHHHHHHHHHHHh
Confidence 1 12 4665 88889999998875
No 27
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.87 E-value=4.5e-22 Score=168.17 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=128.8
Q ss_pred CCCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEE-EEEcCCCCcH--HHhhcCCCCCCCCCcccccHhhhhhcCEE
Q 024934 58 TKLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGL-LYRVPETLTR--EALDHMKVPPRDDDIPEISAADLVEADGF 132 (260)
Q Consensus 58 ~m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~-li~l~~~~~~--~~~~~~~~~~~~dd~~~i~~~~l~~AD~I 132 (260)
.+|||++|++|+ .++|+.+++++.+.+ + .|++++ +++|.+. |. .+.. ..|.. .+++..+ .+++.+||+|
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~-~g~~v~~~idL~~l-P~~~~~~~-~~~~~-~~~~~~l-~~~i~~AD~i 76 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-P-ASMEVNALPSIADI-PLYDADVQ-QEEGF-PATVEAL-AEQIRQADGV 76 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-C-TTEEEEECCCSTTC-CCCCHHHH-HHTCS-CHHHHHH-HHHHHHSSEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-c-CCCEEEEEEeHHHC-CCCCcccc-cccCC-CHHHHHH-HHHHHHCCEE
Confidence 368999999997 589999999987755 4 689999 9999984 32 1111 01321 3455556 7899999999
Q ss_pred EEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccc
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFK 212 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~ 212 (260)
||+||+||+++|+.||+|+|++.. +....|.||++++++++|+..|+. .+...+...|..+|+.+++.+..+-
T Consensus 77 v~~sP~y~~~~~~~lK~~iD~~~~-~~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~----- 149 (193)
T 3svl_A 77 VIVTPEYNYSVPGGLKNAIDWLSR-LPDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMG----- 149 (193)
T ss_dssp EEEECCBTTBCCHHHHHHHHHHHT-STTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEE-----
T ss_pred EEEecccCCCCCHHHHHHHHHHhh-cCccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEee-----
Confidence 999999999999999999999865 223478999999999876545554 4567788888899999997532110
Q ss_pred ccccCCCcccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 213 MDSIRGGSPYGAGVFAGD-GTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 213 ~~~~~~g~~~g~~~~~~~-g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
+. ....|..+ |. ..|++..+.++.+.++++..+++++
T Consensus 150 ------~~--~~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 150 ------GV--IQNKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp ------TT--GGGGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred ------cc--hhhhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 01123222 43 3588999999999999999887654
No 28
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.86 E-value=1.7e-21 Score=179.95 Aligned_cols=149 Identities=22% Similarity=0.270 Sum_probs=124.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+|++|+|+|++|||+++|++|++++.+ .|++++++++.+.. ...+ .+++.+||+||||||
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~-~g~~v~~~~~~~~~----------------~~~~-~~~l~~~d~iiigsP 316 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMS-EGVDVRVYCLHEDD----------------RSEI-VKDILESGAIALGAP 316 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTSC----------------HHHH-HHHHHTCSEEEEECC
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCC----------------HHHH-HHHHHHCCEEEEECc
Confidence 47899999999999999999999999998 89999999998742 2233 568999999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccC
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIR 217 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~ 217 (260)
+|++++++.||+|+|++...|... |+||++++|+++|+. ++ +...+...|..+|+.+++. +.
T Consensus 317 ~y~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~-~~---a~~~l~~~l~~~g~~~~~~-~~------------ 378 (404)
T 2ohh_A 317 TIYDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGN-GG---ATGTMKELLAEAGFDVACE-EE------------ 378 (404)
T ss_dssp EETTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSS-CC---HHHHHHHHHHHTTEEEEEE-EE------------
T ss_pred cccccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCC-Ch---hHHHHHHHHHHCCCEEEeE-EE------------
Confidence 999999999999999987665544 799999999999884 33 2457788888899998863 21
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
. ...|++++++.++.+++++++.++
T Consensus 379 ---------~----~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 379 ---------V----YYVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp ---------E----ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------E----eeCCCHHHHHHHHHHHHHHHHHHh
Confidence 0 125889999999999999998764
No 29
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.86 E-value=7.3e-21 Score=160.54 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=128.5
Q ss_pred CCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCc-HHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT-REALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~-~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
|+||+||+||. .++++++|+++++.+. .+++++++++.++.. .+-.+.. ..+.+..+ .++|.+||+|||+
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~--~~~~~~~idl~dLP~~~~d~~~~----~p~~~~~l-~~~i~~aD~~ii~ 74 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE--GRLEFHLLHIGDLPHYNDDLWAD----APESVLRL-KDRIEHSDAVLAI 74 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT--TTEEEEECCGGGSCCCCGGGGGG----CCHHHHHH-HHHHHTSSEEEEE
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc--CCCEEEEEecccCCCCCCCcccC----CCHHHHHH-HHHHHhCCcEEEe
Confidence 66799999996 5678999999998876 489999999987421 1111100 01122233 5789999999999
Q ss_pred ccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDS 215 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~ 215 (260)
||+|++++|+.||+|||.+.+.+....|.|||+++++++++..|+. .....+...|..+|+.+++.+..+-
T Consensus 75 tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~~p~~~i-------- 145 (190)
T 3u7r_A 75 TPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMSMPEAYI-------- 145 (190)
T ss_dssp CCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECCCSCCEE--------
T ss_pred chhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEccCCEEEE--------
Confidence 9999999999999999998765555689999999999877655664 4457788888899999887532100
Q ss_pred cCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024934 216 IRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKL 257 (260)
Q Consensus 216 ~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l 257 (260)
+.....|+.+|. ..|++..+.++.+.+++++.+++.
T Consensus 146 -----~~~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 146 -----QWHAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp -----ECCGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----eccHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 001112333452 457888899999999999998874
No 30
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.76 E-value=3.7e-23 Score=175.69 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=130.9
Q ss_pred CCCeEEEEEecCc--hhHHHHHHHHHHHccCCCCceEEEE-EcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 58 TKLKIFIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLY-RVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li-~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
.+|||+|||+|++ |+|++|++++++.+.+ |++++++ +|.+. |..|..+..|. ..+++..+ .+++.+||+|||
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~--g~~v~~i~dl~~l-p~~~~~~~~~~-~~~~~~~~-~~~i~~AD~iIi 79 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE--GIAITPLGSIGTF-PHYSQDVQEEG-FPAPVLTM-AQQIATADAVVI 79 (199)
Confidence 4689999999984 8999999999999975 8999999 99873 43443333342 23556666 789999999999
Q ss_pred EccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC-ccccCCccccc
Q 024934 135 GFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI-GYTFGAGMFKM 213 (260)
Q Consensus 135 GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~-~~~~~~~~~~~ 213 (260)
+||+||+++|+.||+|||++...|.. .|.||++++|+++|+..|+. .+...+...|..+|+.+++. .+.+.
T Consensus 80 ~tP~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~~l~~lg~~~v~~~~v~i~------ 151 (199)
T 3s2y_A 80 VTPEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGGA-RAQYHLRQSLVFLDAYVLNRPEAMIG------ 151 (199)
Confidence 99999999999999999998754432 68999999999875544442 34567777888889998875 33211
Q ss_pred cccCCCcccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 214 DSIRGGSPYGAGVFAGD-GTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 214 ~~~~~g~~~g~~~~~~~-g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
. ....|..+ |. ..+++..+.++.+.+++++.+++.+
T Consensus 152 ------~--~~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 188 (199)
T 3s2y_A 152 ------Q--VTGKVDAQTLE-LSDVATREFLARQLDALAALARTLS 188 (199)
Confidence 0 01123223 42 3456677888888888888776644
No 31
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.85 E-value=4.2e-21 Score=179.56 Aligned_cols=152 Identities=20% Similarity=0.226 Sum_probs=121.6
Q ss_pred cCccccccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhh
Q 024934 49 TTSSQLREITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVE 128 (260)
Q Consensus 49 ~~~~~~~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~ 128 (260)
.|++. .+...+|+|+|+|+||||++||++|++++.+ .|+++.++++.+.. ..+++++ .+++.+
T Consensus 257 ~w~~~--~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~-~Gv~~~~~~~~d~~-------------~~~~s~i-~~~i~~ 319 (410)
T 4dik_A 257 SVAKG--DPKKGKVTVIYDSMYGFVENVMKKAIDSLKE-KGFTPVVYKFSDEE-------------RPAISEI-LKDIPD 319 (410)
T ss_dssp HHHHT--CCCTTEEEEEEECSSSHHHHHHHHHHHHHHH-TTCEEEEEEECSSC-------------CCCHHHH-HHHSTT
T ss_pred Hhhcc--cccccceeeEEecccChHHHHHHHHHHHHHh-cCCceEEEEeccCC-------------CCCHHHH-HHHHHh
Confidence 55542 2346799999999999999999999999999 99999988887642 1355666 788999
Q ss_pred cCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCC
Q 024934 129 ADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGA 208 (260)
Q Consensus 129 AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~ 208 (260)
||+||||||||++++.+.|..|++.+..+ .++||++++|+|+||. |+. +..+.+.|...|+.+++....
T Consensus 320 ~~~ivlGspT~~~~~~p~~~~~l~~l~~~----~~~~K~~~~FGSyGWs-g~a---~~~~~~~l~~~~~~~v~~~~~--- 388 (410)
T 4dik_A 320 SEALIFGVSTYEAEIHPLMRFTLLEIIDK----ANYEKPVLVFGVHGWA-PSA---ERTAGELLKETKFRILSFTEI--- 388 (410)
T ss_dssp CSEEEEEECCTTSSSCHHHHHHHHHHHHH----CCCCCEEEEEEECCCC-CTT---SCCHHHHHTTSSCEEEEEEEE---
T ss_pred CCeEEEEeCCcCCcCCHHHHHHHHHHHhc----ccCCCEEEEEECCCCC-cHH---HHHHHHHHHHCCCEEECcEEE---
Confidence 99999999999999999999999987654 5789999999999994 442 466788888999998864321
Q ss_pred ccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHH
Q 024934 209 GMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYM 250 (260)
Q Consensus 209 ~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~l 250 (260)
.+ ..++++++++|..++++-
T Consensus 389 ---------------------~~-~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 389 ---------------------KG-SNMDERKIEEAISLLKKE 408 (410)
T ss_dssp ---------------------CS-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------EC-CCCCHHHHHHHHHHHHHh
Confidence 01 247888888888887654
No 32
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.84 E-value=1.7e-20 Score=158.67 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=106.9
Q ss_pred CeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC-----CCCCcccccHhhhhhcCEE
Q 024934 60 LKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP-----RDDDIPEISAADLVEADGF 132 (260)
Q Consensus 60 ~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~-----~~dd~~~i~~~~l~~AD~I 132 (260)
||||||++|+ .++|..|++++++++ + .|.++++++|.+..+.+|+.|..|.. ..+++..+ .++|.+||+|
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-S-KEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKY-RDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-C-TTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHH-HHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-c-CCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHH-HHHHHhCCEE
Confidence 7999999997 568999999999999 6 89999999999887778888877642 23555555 7899999999
Q ss_pred EEEccccCCCchHHHHHHHHHhccc-c--c------CCCCCCCcEEEEEeeCCC--C-----CChHHHHHHHHHHHHhcC
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTGML-W--K------EGKLVGKPAGFFVSTGTQ--G-----GGQETTAWTAITQLAHHG 196 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~~l-~--~------~~~l~gK~~~if~s~G~~--~-----Gg~e~~l~~l~~~l~~~g 196 (260)
||++|+||+++|+.||+|||++... | . .+.|+||++.+++|+|+. . +.. . ..+...|...|
T Consensus 78 V~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~--~-~~l~~~l~~~G 154 (196)
T 3lcm_A 78 IFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYG--K-VLKKQILKPCA 154 (196)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTT--H-HHHHHTTGGGT
T ss_pred EEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCH--H-HHHHHHHHhcC
Confidence 9999999999999999999998532 1 1 136899999999998874 0 112 1 33455556667
Q ss_pred cEEec
Q 024934 197 MLFVP 201 (260)
Q Consensus 197 m~vV~ 201 (260)
|..++
T Consensus 155 ~~~~~ 159 (196)
T 3lcm_A 155 ISPVK 159 (196)
T ss_dssp CCCEE
T ss_pred Cceee
Confidence 76654
No 33
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.84 E-value=1.1e-20 Score=167.66 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCeEEEEEecCc--hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCC----------------------
Q 024934 59 KLKIFIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPR---------------------- 114 (260)
Q Consensus 59 m~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~---------------------- 114 (260)
||||||||+|+. |+|..|++.+++++++ .|++|++++|.+..+.+|+.|..|...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~-~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKK-KGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHL 80 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCB
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHh-CCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccC
Confidence 889999999984 7999999999999988 899999999999877778888776411
Q ss_pred CCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccccc---------CCCCCCCcEEEEEeeCCCC-----CC
Q 024934 115 DDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWK---------EGKLVGKPAGFFVSTGTQG-----GG 180 (260)
Q Consensus 115 ~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~---------~~~l~gK~~~if~s~G~~~-----Gg 180 (260)
.+++..+ .++|.+||+|||++|+||+++|+.||+|||++..... ...|+||++.+++|+|+.. ++
T Consensus 81 ~dd~~~~-~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g 159 (273)
T 1d4a_A 81 SPDIVAE-QKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQG 159 (273)
T ss_dssp CHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTB
T ss_pred cHHHHHH-HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhcccc
Confidence 1233333 5679999999999999999999999999999864321 2468999999999988741 22
Q ss_pred h----HHHHHHHH-HHHHhcCcEEec
Q 024934 181 Q----ETTAWTAI-TQLAHHGMLFVP 201 (260)
Q Consensus 181 ~----e~~l~~l~-~~l~~~gm~vV~ 201 (260)
. +..+..+. ..|...|+.+++
T Consensus 160 ~~~~~~~~~~~~~~~~l~~~G~~~~~ 185 (273)
T 1d4a_A 160 IHGDMNVILWPIQSGILHFCGFQVLE 185 (273)
T ss_dssp TTCCHHHHHHHHHTTTTGGGTCEECC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCeeee
Confidence 1 12222333 245667777765
No 34
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.83 E-value=1.3e-20 Score=160.68 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=102.9
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccCCC--CceEEEEEcCCCCcHHHh----hcCCC-CCC--C----C---Ccc
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDGVD--GVEGLLYRVPETLTREAL----DHMKV-PPR--D----D---DIP 119 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~--G~ev~li~l~~~~~~~~~----~~~~~-~~~--~----d---d~~ 119 (260)
|||||||++|+. |+|..|++.+++++++ . |+++++++|.+...+.|. .|..| +.. . + ++.
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~-~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYRE-AHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSD 79 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHH-HCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 899999999974 5799999999999987 5 899999999887444333 23333 211 0 0 133
Q ss_pred cccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-----cc--------CCCCCCCcEEEEEeeCC--CCCCh---
Q 024934 120 EISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-----WK--------EGKLVGKPAGFFVSTGT--QGGGQ--- 181 (260)
Q Consensus 120 ~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-----~~--------~~~l~gK~~~if~s~G~--~~Gg~--- 181 (260)
.+ .++|.+||+|||+||+||+++|+.||+|||++... +. .+.|+||++.+++++|+ ..++.
T Consensus 80 ~~-~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~ 158 (212)
T 3r6w_A 80 QL-VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQ 158 (212)
T ss_dssp HH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTG
T ss_pred HH-HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCC
Confidence 44 68899999999999999999999999999998532 00 23689999999999883 22211
Q ss_pred --HHHHHHHHHHHHhcCcEEecC
Q 024934 182 --ETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 182 --e~~l~~l~~~l~~~gm~vV~~ 202 (260)
+.....+...|...|+..++.
T Consensus 159 ~~~~~~~~l~~~l~~~G~~~~~~ 181 (212)
T 3r6w_A 159 AMNHADPWLRTALGFIGIDEVTV 181 (212)
T ss_dssp GGCCSHHHHHHHHHHHTCCEEEE
T ss_pred chhhhHHHHHHHHHHCCCceeEE
Confidence 112344566667778887753
No 35
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.83 E-value=1.2e-19 Score=148.92 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=116.4
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+|||+|++|||+++|+.|++++.. . ++++++++.+. +.+++.+||.||||+|||
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~-~-~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~pty 57 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGG-E-SIVDLNDIANA---------------------DASDLNAYDYLIIGCPTW 57 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTS-T-TTEEEEEGGGC---------------------CGGGGGGCSEEEEECCEE
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCc-c-cceEEEEhhhC---------------------CHhHHhhCCEEEEEeccc
Confidence 689999999999999999999999987 5 67899998753 245788999999999999
Q ss_pred C-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHhcCcEEecC----ccccCCcccc
Q 024934 140 Y-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMLFVPI----GYTFGAGMFK 212 (260)
Q Consensus 140 ~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~-~G-g~e~~l~~l~~~l~~~gm~vV~~----~~~~~~~~~~ 212 (260)
+ |.+|..++.|++++.. ..++||++++|++++.. .| ....++..+...|..+|+.+++. ++.+..
T Consensus 58 ~~g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~---- 129 (169)
T 1czn_A 58 NVGELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNE---- 129 (169)
T ss_dssp TTTEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSC----
T ss_pred CCCcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceec----
Confidence 8 7799999999998753 36899999999998653 22 23456788888999999999873 221100
Q ss_pred ccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 024934 213 MDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAV 253 (260)
Q Consensus 213 ~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~ 253 (260)
...+..+.+.|. .+. + ..+++.+.++++.+++.+.+.
T Consensus 130 s~~~~~~~~~gl-~~~--~-~~~~~~~~~~~~~w~~~~~~~ 166 (169)
T 1czn_A 130 SKAVRNNQFVGL-AID--E-DNQPDLTKNRIKTWVSQLKSE 166 (169)
T ss_dssp CTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHHHH
T ss_pred chheeCCeeeee-eec--C-CCccccCHHHHHHHHHHHHHH
Confidence 000111111221 121 1 246678899999999888654
No 36
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.83 E-value=7.2e-20 Score=168.95 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=123.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.+||+|+|+|++|||+++|+.|++++.+ .|++++++++.+. +..++ .+++.+||+||||||+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~-~g~~v~~~~~~~~----------------~~~~~-~~~~~~~d~ii~gsp~ 313 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRD-EGCTVKLMWCKAC----------------HHSQI-MSEISDAGAVIVGSPT 313 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEETTTS----------------CHHHH-HHHHHTCSEEEEECCC
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHh-CCCeEEEEECCCC----------------CHHHH-HHHHHHCCEEEEECCc
Confidence 6899999999999999999999999988 7999999999763 22233 5678999999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccccCC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRG 218 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~ 218 (260)
|++++++.|++|+|++..+ .++||++++|+++|+. + .++..+.+.|..+|+.+++.++.
T Consensus 314 ~~~~~~~~~~~~l~~l~~~----~l~~k~~~~f~t~g~~-~---~a~~~l~~~l~~~G~~~~~~~~~------------- 372 (402)
T 1e5d_A 314 HNNGILPYVAGTLQYIKGL----RPQNKIGGAFGSFGWS-G---ESTKVLAEWLTGMGFDMPATPVK------------- 372 (402)
T ss_dssp BTTBCCHHHHHHHHHHHHT----CCCSCEEEEEEEESSS-C---HHHHHHHHHHHHTTCBCCSCCEE-------------
T ss_pred cCCCchHHHHHHHHHhhhc----ccCCCEEEEEEcCCCc-c---HHHHHHHHHHHHCCCEEecCceE-------------
Confidence 9999999999999997642 5899999999999762 2 24678888899999988763322
Q ss_pred CcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024934 219 GSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKKLC 258 (260)
Q Consensus 219 g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~l~ 258 (260)
+ +..|++++++.++.++++|++.+++..
T Consensus 373 --------~----~~~p~~~~~~~~~~~~~~l~~~l~~~~ 400 (402)
T 1e5d_A 373 --------V----KNVPTHADYEQLKTMAQTIARALKAKL 400 (402)
T ss_dssp --------E----ESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------E----eeCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 125889999999999999999887543
No 37
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.83 E-value=2.8e-19 Score=146.69 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=114.4
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+|||+|++|||+++|+.|++++.+ . +++++++.+. +.+++.+||.||||+|||
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~-~--~v~~~~~~~~---------------------~~~~l~~~d~ii~g~p~y 57 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGN-D--VVTLHDVSQA---------------------EVTDLNDYQYLIIGCPTL 57 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEETTTC---------------------CGGGGGGCSEEEEEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCc-C--CcEEEEcccC---------------------CHHHHhhCCEEEEEEeeC
Confidence 799999999999999999999999976 3 7888898763 145788999999999999
Q ss_pred C-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHhcCcEEecCccccCCccccc-cc
Q 024934 140 Y-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKM-DS 215 (260)
Q Consensus 140 ~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~-~G-g~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~-~~ 215 (260)
+ |.+|..++.|++++.. ..|+||++++|++++.. .+ ....++..+...|..+|+.+++.-...|. .|.+ ..
T Consensus 58 ~~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~-~~~~s~~ 132 (169)
T 1obo_A 58 NIGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGY-DFNDSKA 132 (169)
T ss_dssp TTTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTC-CCSCCTT
T ss_pred CCCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCc-ccccchh
Confidence 6 7788889999998753 36899999999998753 22 23456788888999999999874111110 0100 00
Q ss_pred cCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024934 216 IRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVV 254 (260)
Q Consensus 216 ~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~ 254 (260)
+..+.+.+. .+. . ..+++.+.++++.+++.+...+
T Consensus 133 ~~~~~~~~l-~~~--~-~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 133 LRNGKFVGL-ALD--E-DNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp EETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCceeeE-Eee--C-CCccccCHHHHHHHHHHHHHHh
Confidence 111111121 111 1 1245678888889988886543
No 38
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.82 E-value=5.6e-20 Score=169.46 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=121.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.+|++|+|+|++|||+++|+++++++.+ .|++++++++.+. +..++ .+++.+||+||||+|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~-~g~~v~~~~~~~~----------------~~~~~-~~~~~~~d~ii~g~p~ 312 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVA-GGCEVKLFKLSVS----------------DRNDV-IKEILDARAVLVGSPT 312 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGS----------------CHHHH-HHHHHHCSEEEEECCC
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHh-cCCeEEEEECCCC----------------CHHHH-HHHHHHCCEEEEECCc
Confidence 6899999999999999999999999987 7999999999753 22333 5678999999999999
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc-cccCCccccccccC
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG-YTFGAGMFKMDSIR 217 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~-~~~~~~~~~~~~~~ 217 (260)
|++++++.|++|+|++..+ .++||++++|+++|| .++ ++..+...|..+|+.+++.+ +.
T Consensus 313 y~~~~~~~~~~~l~~l~~~----~~~~k~~~~~~s~g~-~~~---a~~~l~~~l~~~g~~~~~~~~~~------------ 372 (398)
T 1ycg_A 313 INNDILPVVSPLLDDLVGL----RPKNKVGLAFGAYGW-GGG---AQKILEERLKAAKIELIAEPGPT------------ 372 (398)
T ss_dssp BTTBCCGGGHHHHHHHHHH----CCSSCEEEEEEEESS-SCC---HHHHHHHHHHHTTCEESCSSCCE------------
T ss_pred cCccchHHHHHHHHHHhcc----ccCCCEEEEEEeCCC-chH---HHHHHHHHHHHCCeEEecCceEE------------
Confidence 9999999999999997643 579999999999987 444 35778888889999988643 32
Q ss_pred CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 218 GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 218 ~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
+ ...|++++++.++.+|+++++.++
T Consensus 373 ---------~----~~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 373 ---------V----QWVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp ---------E----ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------E----ecCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 125889999999999999998763
No 39
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.82 E-value=2.1e-19 Score=151.78 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=104.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|||||||++|++.++..+++++++++++ .|.++++++|.+..+. ..+|+... .++|.+||+|||++|+
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~-~g~ev~~~dL~~~~~~----------~~~dv~~~-~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQ-HTDRFTVHELYAVYPQ----------GKIDVAAE-QKLIETHDSLVWQFPI 68 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTT-CTTTEEEEEHHHHCTT----------CCCCHHHH-HHHHHTSSSEEEEEEC
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHh-CCCeEEEEEchhcCCC----------CchhHHHH-HHHHHhCCEEEEEcCh
Confidence 8999999999987655799999999998 8999999999876432 13456555 7899999999999999
Q ss_pred cCCCchHHHHHHHHHhccc-cc----CCCCCCCcEEEEEeeCCCC-----C-----ChHHHHHHHHHHHHhcCcEEecC
Q 024934 139 RYGCMAAQMKAFFDSTGML-WK----EGKLVGKPAGFFVSTGTQG-----G-----GQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l-~~----~~~l~gK~~~if~s~G~~~-----G-----g~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
||+++|+.||.|+|++... |. ...|+||++.+++|+|+.. + ..+..+..+...+...||..++.
T Consensus 69 y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~ 147 (192)
T 3f2v_A 69 YWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPP 147 (192)
T ss_dssp BTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCC
T ss_pred hhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeee
Confidence 9999999999999998532 22 1478999999999998741 1 12334455677788889998875
No 40
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.81 E-value=1.3e-19 Score=149.26 Aligned_cols=148 Identities=14% Similarity=-0.019 Sum_probs=109.6
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..|+|++|+|+|++|||+++|+.|++++.+ .|++++++++.+. +..++.++|.||||+
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~ 64 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLA-AKLNVKLVNAGDY---------------------KFKQIASEKLLIVVT 64 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHH-HTCCCEEEEGGGC---------------------CGGGGGGCSEEEEEE
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEeehhhC---------------------CHHHhccCCeEEEEE
Confidence 358899999999999999999999999987 7888999988653 245678999999999
Q ss_pred ccc-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccccc
Q 024934 137 PTR-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDS 215 (260)
Q Consensus 137 PtY-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~ 215 (260)
||| +|.+|..++.|++.+... ....++||++++|+++....+....+...+...|..+|+.++.....
T Consensus 65 pt~g~G~~p~~~~~f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~---------- 133 (167)
T 1ykg_A 65 STQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVD---------- 133 (167)
T ss_dssp ECBGGGBCCGGGHHHHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEE----------
T ss_pred cccCCCcCChhHHHHHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeeccee----------
Confidence 999 799999999999987531 01258899999999743322222345678888888889887643211
Q ss_pred cCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024934 216 IRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKK 256 (260)
Q Consensus 216 ~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~ 256 (260)
.++++.+.++.+++.|++.++.
T Consensus 134 -------------------~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 134 -------------------ADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp -------------------ECTTCHHHHHHHHHHHHHHHHT
T ss_pred -------------------cCCCcHHHHHHHHHHHHHHHHh
Confidence 1234567788888888877653
No 41
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.80 E-value=1.6e-19 Score=150.32 Aligned_cols=165 Identities=19% Similarity=0.137 Sum_probs=114.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||+|||+|++|||+++|+.|++++.+ . ++++++++.+. +.+++.+||.||||+||
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~-~-~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~pt 57 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDD-E-VMAKPLNVNRA---------------------DVADFMAYDFLILGTPT 57 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCT-T-TBCCCEEGGGC---------------------CHHHHHHCSEEEEEEEC
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhcc-c-CceEEEEcccC---------------------CHHHHhhCCeEEEEEee
Confidence 7899999999999999999999999977 4 67777887652 25678899999999999
Q ss_pred cC-CCch--------HHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHhcCcEEecCccccC
Q 024934 139 RY-GCMA--------AQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMLFVPIGYTFG 207 (260)
Q Consensus 139 Y~-g~~~--------~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~-~G-g~e~~l~~l~~~l~~~gm~vV~~~~~~~ 207 (260)
|+ |.+| ..++.|++++.. ..|+||++++|++++.. .+ ....++..+...|..+|+.+++.....|
T Consensus 58 y~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g 133 (182)
T 2wc1_A 58 LGDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKG 133 (182)
T ss_dssp BTTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTT
T ss_pred CCCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCC
Confidence 99 8888 889999998753 36899999999997642 11 1234567888889999999987522111
Q ss_pred Cccccc-cccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 208 AGMFKM-DSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 208 ~~~~~~-~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
. .|.. ..+..+.+.|. .. ++ ...++.+.++++.+.+.|.+.+.
T Consensus 134 ~-~~~~~~~~~~~~~~gl-~~--d~-~~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 134 Y-GFEDSLAVVEGEFLGL-AL--DQ-DNQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp S-CCSCCTTEETTEESSE-EE--CT-TTCGGGHHHHHHHHHHHTHHHHT
T ss_pred c-CcccchhhhcCceeee-ec--cC-CCCccccHHHHHHHHHHHHHHHh
Confidence 0 0100 00111111221 11 11 11224467788888888776553
No 42
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.80 E-value=2.4e-20 Score=159.55 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=102.7
Q ss_pred CCCeEEEEEecCc----hhHHHHHHHHHHHccCCC--CceEEEEEcCCCCcHHHhhcCCC-----------CCC-----C
Q 024934 58 TKLKIFIVFYSMY----GHVEGLAKRMKKGVDGVD--GVEGLLYRVPETLTREALDHMKV-----------PPR-----D 115 (260)
Q Consensus 58 ~m~KVlIIy~S~~----GnT~~lA~~i~~~l~~~~--G~ev~li~l~~~~~~~~~~~~~~-----------~~~-----~ 115 (260)
.|||||||++|+. ++|..|++++.+++++ . |+++++++|.+... +|+.|..| ... .
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~-~~~g~ev~~~dL~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKE-AHPNDTVVELDLYKEEL-PYVGVDMINGTFKAGKGFDLTEEEAKAV 80 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEEGGGSCC-CCCCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCC-CcCCHHHHHhhhccCccccCCHHHHhhH
Confidence 3789999999976 7899999999999987 4 89999999997644 33332211 100 1
Q ss_pred CCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-c----c----CCCCCCCcEEEEEeeCCCCCCh-----
Q 024934 116 DDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-W----K----EGKLVGKPAGFFVSTGTQGGGQ----- 181 (260)
Q Consensus 116 dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-~----~----~~~l~gK~~~if~s~G~~~Gg~----- 181 (260)
+++..+ .++|.+||+|||++|+||+++|+.||+|+|++... | . .+.|+||++.+++++|+..++.
T Consensus 81 ~~~~~~-~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~ 159 (211)
T 3p0r_A 81 AVADKY-LNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEV 159 (211)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGG
T ss_pred HHHHHH-HHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccch
Confidence 234444 68899999999999999999999999999998532 1 0 1358999999999988753321
Q ss_pred HHHHHHHHHHHHhcCcEEec
Q 024934 182 ETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 182 e~~l~~l~~~l~~~gm~vV~ 201 (260)
+.....+...|...|+..+.
T Consensus 160 ~~~~~~l~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 160 EMAVKYVASMMGFFGATNME 179 (211)
T ss_dssp CBSHHHHHHHHHHTTCCSCE
T ss_pred hHHHHHHHHHHHhCCCCeee
Confidence 11234455666777887664
No 43
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.80 E-value=2.1e-19 Score=155.61 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=93.4
Q ss_pred CeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCC---CCC-------------------CC
Q 024934 60 LKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMK---VPP-------------------RD 115 (260)
Q Consensus 60 ~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~---~~~-------------------~~ 115 (260)
||||||++|+ .|+|..|++++++++++ .|++|++++|.+..+.+|+.|.. |.. ..
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~-~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 80 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSR-QGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA 80 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHH-HTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCc
Confidence 7999999997 57899999999999988 79999999999886666665432 211 12
Q ss_pred CCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-c--------cCCCCCCCcEEEEEeeCCC
Q 024934 116 DDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-W--------KEGKLVGKPAGFFVSTGTQ 177 (260)
Q Consensus 116 dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-~--------~~~~l~gK~~~if~s~G~~ 177 (260)
+++... .++|.+||+|||++|+||+++|+.||+|+|++... | ..+.|+||++.+++|+|+.
T Consensus 81 dd~~~~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 81 SDITDE-QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHHH-HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 344444 67899999999999999999999999999998532 1 1247899999999998863
No 44
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.79 E-value=3e-18 Score=141.92 Aligned_cols=163 Identities=21% Similarity=0.186 Sum_probs=114.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||+|||+|++|||+++|+.|++.+.. . +++++++.+. ..+++.++|.||||+|||
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~-~--~v~i~~~~~~---------------------~~~~l~~~d~ii~g~pt~ 56 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGK-D--VADVHDIAKS---------------------SKEDLEAYDILLLGIPTW 56 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEEGGGC---------------------CHHHHHTCSEEEEECCEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhcc-C--ceEEEEcccC---------------------ChhHhhhCCEEEEEEeec
Confidence 689999999999999999999999976 3 5778887642 256788999999999997
Q ss_pred -CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCC--hHHHHHHHHHHHHhcCcEEecCccccCCccccc-cc
Q 024934 140 -YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG--QETTAWTAITQLAHHGMLFVPIGYTFGAGMFKM-DS 215 (260)
Q Consensus 140 -~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg--~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~-~~ 215 (260)
.|.+|..++.|++.+.. ..++||++++|++++..+.+ -..++..+.+.|...|+.+++.....|. -|.. ..
T Consensus 57 ~~G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~-~~~~s~~ 131 (175)
T 1ag9_A 57 YYGEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGY-HFEASKG 131 (175)
T ss_dssp TTTEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTC-CCSCCSC
T ss_pred CCCcChHHHHHHHhhhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCc-ccccchh
Confidence 58899999999998753 26899999999996542111 1356788888999999999874211110 0000 00
Q ss_pred cC-CCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024934 216 IR-GGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVK 255 (260)
Q Consensus 216 ~~-~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~ 255 (260)
+. .+.+.|. .+. . ..+++.+.++++.+++.|...+.
T Consensus 132 ~~~~~~~~gl-~~~--~-~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 132 LADDDHFVGL-AID--E-DRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp EEETTEESSE-EEC--T-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeCCeEEee-ecC--C-CCcccccHHHHHHHHHHHHHHhh
Confidence 00 1111121 121 1 24667888999999998876553
No 45
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.79 E-value=2.4e-18 Score=146.36 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=100.8
Q ss_pred CCeEEEEEecCc------hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEE
Q 024934 59 KLKIFIVFYSMY------GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGF 132 (260)
Q Consensus 59 m~KVlIIy~S~~------GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~I 132 (260)
..|||||++|+. ++|+.|++++++++++ .|.++++++|.+. +++..+ .++|.+||+|
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~-~g~~v~~~dL~~~---------------~d~~~~-~~~l~~AD~i 74 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRD-LGHDVRIVRADSD---------------YDVKAE-VQNFLWADVV 74 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHH-TTCEEEEEESSSC---------------CCHHHH-HHHHHHCSEE
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHH-cCCEEEEEeCCcc---------------ccHHHH-HHHHHhCCEE
Confidence 569999999987 8999999999999998 7999999999862 355555 7899999999
Q ss_pred EEEccccCCCchHHHHHHHHHhccc-cc-------------------CCCCCCCcEEEEEeeCCCCC-----C-------
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTGML-WK-------------------EGKLVGKPAGFFVSTGTQGG-----G------- 180 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~~l-~~-------------------~~~l~gK~~~if~s~G~~~G-----g------- 180 (260)
||+||+||+++|++||+|||++... |. ...|+||++.+++|+|+..+ +
T Consensus 75 V~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~ 154 (204)
T 2amj_A 75 IWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVG 154 (204)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCC
T ss_pred EEECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCC
Confidence 9999999999999999999997422 32 13579999999999877421 1
Q ss_pred hHHHHHHHHHHHHhcCcEEecC
Q 024934 181 QETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 181 ~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
.+..+..+...|...||.+++.
T Consensus 155 ~~~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 155 VDGVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp HHHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHHcCCeecce
Confidence 1223334666778889988764
No 46
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.79 E-value=1.8e-19 Score=155.51 Aligned_cols=173 Identities=13% Similarity=0.069 Sum_probs=120.3
Q ss_pred CCCeEEEEEecCc-----hhHHHHHHHHHHHccCC-CCc-eEEEEEcCCCCcHH----HhhcCCC-----CCC------C
Q 024934 58 TKLKIFIVFYSMY-----GHVEGLAKRMKKGVDGV-DGV-EGLLYRVPETLTRE----ALDHMKV-----PPR------D 115 (260)
Q Consensus 58 ~m~KVlIIy~S~~-----GnT~~lA~~i~~~l~~~-~G~-ev~li~l~~~~~~~----~~~~~~~-----~~~------~ 115 (260)
.|||||+|++|+. |+|..|++++++++++. .|. ++++++|.+...+. |..|..+ ... .
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 4899999999964 78999999999999762 268 99999999874433 3333221 000 0
Q ss_pred CCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc---cc------CCCC-CCCcEEEEEeeCCCCCCh----
Q 024934 116 DDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML---WK------EGKL-VGKPAGFFVSTGTQGGGQ---- 181 (260)
Q Consensus 116 dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l---~~------~~~l-~gK~~~if~s~G~~~Gg~---- 181 (260)
+++..+ .++|.+||+|||++|+||+++|+.||+|+|++... |. .+.| .||++.+++++|+..++.
T Consensus 83 d~~~~l-~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEI-LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHH-HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 223344 68899999999999999999999999999998643 11 1246 899999999988753321
Q ss_pred --HHHHHHHHHHHHhcCcEEecCccccCCccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024934 182 --ETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVV 254 (260)
Q Consensus 182 --e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~ 254 (260)
+.....+...|...|+..+..-+.. |. ...+.++.++.|+..++++++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~----------------g~-------~~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQ----------------GT-------AVLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEEC----------------CT-------TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEc----------------Cc-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 1233456667777888877532210 00 11246778888888887777654
No 47
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.78 E-value=2.1e-18 Score=141.52 Aligned_cols=125 Identities=18% Similarity=0.290 Sum_probs=86.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC--CcH----HHhhcCCCCC--CCC-Ccccc--cHhhhh
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET--LTR----EALDHMKVPP--RDD-DIPEI--SAADLV 127 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~--~~~----~~~~~~~~~~--~~d-d~~~i--~~~~l~ 127 (260)
|+||+|||+|++|||+++|+.|++.+.. +++++... .+. .+..+.+|.. .++ ..+++ ...++.
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~------~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 77 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGA------DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPE 77 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGG
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCC------CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChh
Confidence 7899999999999999999999999854 44554422 111 1111111100 000 12222 145789
Q ss_pred hcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 128 EADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 128 ~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
+||.||||+|+|++++++.++.|++++ .++||++++|+|+|+.+ ...++..+.+.+. +..++
T Consensus 78 ~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 78 KYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGSG--IGNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCC--SHHHHHHHHHHCT--TSEEC
T ss_pred hCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCC--ccHHHHHHHHHcC--CCEee
Confidence 999999999999999999999999985 58999999999998843 2345566666654 55555
No 48
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.77 E-value=2e-18 Score=143.01 Aligned_cols=126 Identities=16% Similarity=0.258 Sum_probs=87.9
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCc--H----HHhhcCCCC------CCCCCcccccHh
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLT--R----EALDHMKVP------PRDDDIPEISAA 124 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~--~----~~~~~~~~~------~~~dd~~~i~~~ 124 (260)
..|||++|||+|.+|||+++|+.|++.+.. +++++....+ . .+..+.+|. ...+.+... ..
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~------d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~-~~ 83 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGG------DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSK-KE 83 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCC-CT
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCC------CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccc-cc
Confidence 468999999999999999999999999954 4566554321 1 111111110 001122222 35
Q ss_pred hhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 125 DLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
++.+||.||||+|+|++++++.|+.|++++ .|+||++++|+++|+.+ ...++..+.+.+. +..++
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSEEC
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCeec
Confidence 789999999999999999999999999986 57999999999998743 2345566666654 45544
No 49
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.77 E-value=5.4e-18 Score=140.93 Aligned_cols=161 Identities=20% Similarity=0.136 Sum_probs=113.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
+||+|+|+|++|||+++|+.|++++.. +++++++++.+. +.+++.+||.||||+|||
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~--~~~v~~~~~~~~---------------------~~~~l~~~d~iilg~pt~ 57 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD--ETMSDALNVNRV---------------------SAEDFAQYQFLILGTPTL 57 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT--TTBCCCEEGGGC---------------------CHHHHHTCSEEEEEEECB
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC--CCceEEEEhhhC---------------------CHHHHhcCCEEEEEeccC
Confidence 589999999999999999999999975 466777877652 256788999999999999
Q ss_pred C-CCch--------HHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHhcCcEEecCccccCC
Q 024934 140 Y-GCMA--------AQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMLFVPIGYTFGA 208 (260)
Q Consensus 140 ~-g~~~--------~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~-~G-g~e~~l~~l~~~l~~~gm~vV~~~~~~~~ 208 (260)
+ |.+| ..++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|..+|+.+++.....+.
T Consensus 58 ~~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~ 133 (179)
T 1yob_A 58 GEGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGY 133 (179)
T ss_dssp TTTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTC
T ss_pred CCCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCC
Confidence 9 8999 899999998753 26899999999996543 22 13456788888999899999874222111
Q ss_pred ccccc-cccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 209 GMFKM-DSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 209 ~~~~~-~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
.|.. ..+..+.+.|. .+ +. ..+++.+.++++.+.+.+..
T Consensus 134 -~~~~s~~~~~~~f~gl-~~--d~-~~~~~~~~~~i~~w~~~l~~ 173 (179)
T 1yob_A 134 -EFESSEAVVDGKFVGL-AL--DL-DNQSGKTDERVAAWLAQIAP 173 (179)
T ss_dssp -CCSCCTTBSSSSBSSE-EE--CT-TTCGGGHHHHHHHHHHHHGG
T ss_pred -CcccchhhhcCceecc-cc--CC-CCCCcccHHHHHHHHHHHHH
Confidence 0110 11111122222 11 11 12445677888888877754
No 50
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.76 E-value=1.3e-18 Score=141.02 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=83.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC-CCcH---HHhhcCC----CCCCCCCcccccHhhhhhc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE-TLTR---EALDHMK----VPPRDDDIPEISAADLVEA 129 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~-~~~~---~~~~~~~----~~~~~dd~~~i~~~~l~~A 129 (260)
.|+||+|||+|++|||++||+.|++++.. .++..+++.+ ..+. .|..... .....+++... ..++.+|
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~-~~~l~~~ 77 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKD---SELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLD-NIDYNNY 77 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTT---CEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCC-CCCGGGC
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccC---CCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchh-hhCHhhC
Confidence 36799999999999999999999999854 2332233211 1221 1111100 00001122222 4678999
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
|+||||+|+|++++++.++.|++++. .+.+|++++|+++||..|+ +...+.+.+. +..++
T Consensus 78 d~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~g~---~~~~l~~~~~--~~~~~ 137 (151)
T 3edo_A 78 DLILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNHKA---YVSHFNEWAD--GLNVI 137 (151)
T ss_dssp SEEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCHHH---HHHHHHHHTT--TSEEE
T ss_pred CEEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCCCc---HHHHHHHHcC--CCeee
Confidence 99999999999999999999999873 4678888888887763233 3455555553 45554
No 51
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.76 E-value=9.2e-18 Score=144.33 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=101.8
Q ss_pred cCCCCeEEEEEecCc------hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhc
Q 024934 56 EITKLKIFIVFYSMY------GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEA 129 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~------GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~A 129 (260)
+..|||||||++|+. ++|..+++++++.+++ .|+++++++|.+. +|+... .+++.+|
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~-~g~ev~~~dL~~~---------------~Dv~~~-~~~l~~a 84 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE-SGHQVKITTVDQG---------------YDIESE-IENYLWA 84 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH-TTCCEEEEEGGGC---------------CCHHHH-HHHHHHC
T ss_pred cccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh-CCCEEEEEECCCc---------------cCHHHH-HHHHHhC
Confidence 335999999999983 6789999999999988 8999999999752 345444 7899999
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhccc-cc-------------------CCCCCCCcEEEEEeeCCCC-----CC----
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTGML-WK-------------------EGKLVGKPAGFFVSTGTQG-----GG---- 180 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~~l-~~-------------------~~~l~gK~~~if~s~G~~~-----Gg---- 180 (260)
|+|||++|+||+++|+.||+|+|++... |. .+.|+||++.+++|+|+.. +|
T Consensus 85 D~iv~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~ 164 (218)
T 3rpe_A 85 DTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFH 164 (218)
T ss_dssp SEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTT
T ss_pred CEEEEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccc
Confidence 9999999999999999999999998532 21 1357999999999988751 11
Q ss_pred ---hHHHHHHHHHHHHhcCcEEecC
Q 024934 181 ---QETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 181 ---~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
.+..+..+...+...||..++.
T Consensus 165 g~~~~~~l~p~~~~l~f~G~~~l~~ 189 (218)
T 3rpe_A 165 GVGVDGVYLPFHKANQFLGMKPLPT 189 (218)
T ss_dssp TCHHHHHTHHHHHHHHHTTCEECCC
T ss_pred cCCHHHHHHHHHHHHHhCCCEEece
Confidence 1223344566778889998864
No 52
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.76 E-value=1.9e-19 Score=144.78 Aligned_cols=141 Identities=15% Similarity=0.061 Sum_probs=105.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||+|+|+|++|||+++|+.|++++.+ .|+++++++..+ .+++.++|.||||+||
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~-----------------------~~~l~~~d~vi~g~pt 56 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEE-AGFTTETLHGPL-----------------------LEDLPASGIWLVISST 56 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHH-TTCCEEEECCTT-----------------------SCSSCSEEEEEEECCT
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEecCCC-----------------------HHHcccCCeEEEEECc
Confidence 7899999999999999999999999988 788888776432 2346789999999999
Q ss_pred c-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe----eCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCccccc
Q 024934 139 R-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS----TGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKM 213 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s----~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~ 213 (260)
| +|.+|..++.|++.+... ...++||++++|++ +++. +. +...+.+.|..+|+.++.....
T Consensus 57 ~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~-~~---a~~~l~~~l~~~G~~~~~~~~~-------- 122 (147)
T 2hna_A 57 HGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTF-CG---AIDKLEAELKNSGAKQTGETLK-------- 122 (147)
T ss_dssp TTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCS-SS---CTTHHHHHHHHHTCEECSSCBC--------
T ss_pred cCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHH-HH---HHHHHHHHHHHcCCeEeeeeEE--------
Confidence 9 899999999999987531 12578999999984 3331 22 2356777788889888764332
Q ss_pred cccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024934 214 DSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVV 254 (260)
Q Consensus 214 ~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~ 254 (260)
++..+++++.+.++.++++++..+
T Consensus 123 -----------------~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 123 -----------------INILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp -----------------CCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred -----------------EecCCCCCcHHHHHHHHHHHHHHh
Confidence 111344556677778887777653
No 53
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=4.7e-18 Score=151.32 Aligned_cols=118 Identities=22% Similarity=0.273 Sum_probs=95.5
Q ss_pred CCCeEEEEEecC--chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCC---------------------
Q 024934 58 TKLKIFIVFYSM--YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPR--------------------- 114 (260)
Q Consensus 58 ~m~KVlIIy~S~--~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~--------------------- 114 (260)
..|||||||+|+ .++|..|++.+.+++++ .|.+|+++||.+..+.+|+.|..|...
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~-~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQ-AGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQ 99 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCS
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHH-CCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCC
Confidence 578999999997 47899999999999999 899999999999888888877655321
Q ss_pred CCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHHHhccc-cc----------------CCCCCCCcEEEEEeeCCC
Q 024934 115 DDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGML-WK----------------EGKLVGKPAGFFVSTGTQ 177 (260)
Q Consensus 115 ~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l-~~----------------~~~l~gK~~~if~s~G~~ 177 (260)
.+|+... .+++.+||.|||++|+||+++|+.||.|+|++... |. .+.|+||++.+++|+|+.
T Consensus 100 ~~dv~~~-~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 100 SADIVAE-QEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp CHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred cHHHHHH-HHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 2233333 57899999999999999999999999999998521 11 235789999999998863
No 54
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.74 E-value=1.8e-17 Score=136.91 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=91.9
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~ 140 (260)
||+|+|+|++|||+++|+.|++++.+ . +++++++.+.. +..++.++|.||||+|||+
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~-~--~~~~~~~~~~~--------------------~~~~l~~~d~ii~g~pt~~ 57 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGA-K--ADAPIDVDDVT--------------------DPQALKDYDLLFLGAPTWN 57 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGG-G--BCCCEEGGGCS--------------------CGGGGGGCSEEEEEEECCS
T ss_pred CEEEEEECCCchHHHHHHHHHHHhcc-C--CcEEEehhhcC--------------------ChhHHccCCEEEEEEeecC
Confidence 68999999999999999999999976 3 56667775420 1456789999999999999
Q ss_pred -CCc----hHHHHHHH-HHhcccccCCCCCCCcEEEEEeeCCCCC--ChHHHHHHHHHHHHhcCcEEecC
Q 024934 141 -GCM----AAQMKAFF-DSTGMLWKEGKLVGKPAGFFVSTGTQGG--GQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 141 -g~~----~~~mK~fl-D~~~~l~~~~~l~gK~~~if~s~G~~~G--g~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
|.+ |..++.|+ +++.. ..++||++++|++++..+. .-..++..+.+.|..+|+.+++.
T Consensus 58 ~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~ 123 (173)
T 2fcr_A 58 TGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGF 123 (173)
T ss_dssp TTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECC
T ss_pred CCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEee
Confidence 899 89999999 98753 3689999999999764211 12245678888899999999874
No 55
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.72 E-value=5.4e-17 Score=132.72 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=101.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+|++|+|+|++|||+++|+.|++++ |. ++++++.+. +..++.++|.||||+||
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l----g~-~~~~~~~~~---------------------~~~~l~~~d~ii~g~pt 54 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI----GN-AEVVDVAKA---------------------SKEQFNSFTKVILVAPT 54 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH----CS-EEEEEGGGC---------------------CHHHHTTCSEEEEEEEE
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc----CC-cEEEecccC---------------------CHhHHhhCCEEEEEECC
Confidence 78999999999999999999999998 34 788888653 24578899999999999
Q ss_pred cC-CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHhcCcEEecC----ccccCCccc
Q 024934 139 RY-GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMLFVPI----GYTFGAGMF 211 (260)
Q Consensus 139 Y~-g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~-~G-g~e~~l~~l~~~l~~~gm~vV~~----~~~~~~~~~ 211 (260)
|+ |.+|..++.|++.+... .++||++++|+++... .+ ....++..+.+.|.. +.+++. +|.+...
T Consensus 55 ~~~g~~p~~~~~f~~~l~~~----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s-- 126 (164)
T 2bmv_A 55 AGAGDLQTDWEDFLGTLEAS----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEAS-- 126 (164)
T ss_dssp ETTTEECHHHHHHHTTCCTH----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCC--
T ss_pred cCCCcCcHHHHHHHHHHhhh----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccch--
Confidence 97 67888899999987421 4789999999983321 11 112245667777665 666653 2211000
Q ss_pred cccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 212 KMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 212 ~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
..+..+.+.+. .+ +. ..+++++.++++.+++.+.+
T Consensus 127 --~~~~~~~~~~l-~~--~~-~~~~~~~~~~~~~w~~~l~~ 161 (164)
T 2bmv_A 127 --KAVEGGKFVGL-VI--DE-DNQDDLTDERISKWVEQVKG 161 (164)
T ss_dssp --TTEETTEESSE-EE--CT-TTCGGGHHHHHHHHHHHHTT
T ss_pred --hhhhcCcccCc-cC--CC-CCccccCHHHHHHHHHHHHH
Confidence 00111111111 11 11 12345678999999988864
No 56
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.70 E-value=3.2e-17 Score=138.23 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=94.9
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++||+|+|+|++|||+++|+.|++++.+ .|++++++++.+. .+++.++|.||||+|
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~v~~l~~~----------------------~~~l~~~d~vi~g~~ 76 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMS-KGFAPQVATLDSH----------------------AGNLPREGAVLIVTA 76 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHT-TTCCCEEEEGGGS----------------------TTCCCSSSEEEEEEC
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHh-CCCceEEeeHHHh----------------------hhhhhhCCeEEEEEe
Confidence 58899999999999999999999999988 8999999988752 235678999999999
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCC-ChHHHHHHHHHHHHhcCcEEec
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGG-GQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~G-g~e~~l~~l~~~l~~~gm~vV~ 201 (260)
||+|.+|..++.|++.+..+- ...|+||++++|+++....+ .-......+.+.|..+|+.++.
T Consensus 77 Ty~G~~p~~~~~fl~~L~~~~-~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~ 140 (191)
T 1bvy_F 77 SYNGHPPDNAKQFVDWLDQAS-ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIA 140 (191)
T ss_dssp CBTTBCCTTTHHHHHHHHTCC-SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCE
T ss_pred ecCCCcCHHHHHHHHHHHhcc-chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEee
Confidence 999999999999999975321 12588999999997522111 1122457788888888877664
No 57
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.67 E-value=1.2e-15 Score=127.04 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=94.1
Q ss_pred CeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
||||||++|++ +++.++++.+++.+ .++++++|.+. +|+... .+++.+||.|||++
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~-----~~v~v~dL~~~---------------~D~~~~-~~~l~~aD~iV~~~ 59 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENF-----SNVTWHPLVAD---------------FNVEQE-QSLLLQNDRIILEF 59 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTC-----TTEEEEECCTT---------------CCHHHH-HHHHHTCSEEEEEE
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcC-----CCEEEEECCCc---------------ccHHHH-HHHHHhCCEEEEEC
Confidence 68999999985 66777777766665 35899999861 456555 78999999999999
Q ss_pred cccCCCchHHHHHHHHHhccc-cc---CCCCCCCcEEEEEeeCCCC-----C-----ChHHHHHHHHHHHHhcCcEEecC
Q 024934 137 PTRYGCMAAQMKAFFDSTGML-WK---EGKLVGKPAGFFVSTGTQG-----G-----GQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l-~~---~~~l~gK~~~if~s~G~~~-----G-----g~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
|+||+++|+.||.|+|++... |. .+.|+||++.+++|+|+.. + ..+..+..+...+...||.+++.
T Consensus 60 P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~ 139 (177)
T 3ha2_A 60 PLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPI 139 (177)
T ss_dssp ECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCC
T ss_pred ChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCe
Confidence 999999999999999997532 21 2478999999999998641 1 12344556666778889998864
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.65 E-value=5.7e-16 Score=144.89 Aligned_cols=163 Identities=18% Similarity=0.131 Sum_probs=113.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|||||||++|+..++..+.+.+++.+.+ ..++++++|.+..| ...+|+... .++|.+||.|||++|
T Consensus 235 ~~mkiLvi~gspr~~ss~~n~~l~~~~~~--~~~v~v~dL~~~~p----------~~~~d~~~~-~~~l~~aD~iv~~~P 301 (413)
T 3l9w_A 235 SSGMILIIYAHPYPHHSHANKRMLEQART--LEGVEIRSLYQLYP----------DFNIDIAAE-QEALSRADLIVWQHP 301 (413)
T ss_dssp --CCEEEEECCSCGGGCSHHHHHHHHHHT--SSSEEEEEHHHHCT----------TSCCCHHHH-HHHHHTCSEEEEEEE
T ss_pred CCCCEEEEEECCCcchHHHHHHHHHHHhc--CCCEEEEEchhhCC----------CCcHHHHHH-HHHHHhCCEEEEECc
Confidence 36899999999976654567777777765 35788888865432 123566555 789999999999999
Q ss_pred ccCCCchHHHHHHHHHhccc-cc----CCCCCCCcEEEEEeeCCCCC--------ChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 138 TRYGCMAAQMKAFFDSTGML-WK----EGKLVGKPAGFFVSTGTQGG--------GQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l-~~----~~~l~gK~~~if~s~G~~~G--------g~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
+||+++|+.||+|+|++... |. ...|+||++.+++|+|+..+ +.+..+..+...+...||.+++.-+
T Consensus 302 ~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~ 381 (413)
T 3l9w_A 302 MQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFA 381 (413)
T ss_dssp CBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEE
T ss_pred hhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEE
Confidence 99999999999999998533 21 12589999999998876321 1122345677778888999886422
Q ss_pred ccCCccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024934 205 TFGAGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKK 256 (260)
Q Consensus 205 ~~~~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~ 256 (260)
. +|. . ...+++..+.++.+.++|..++.+
T Consensus 382 ~----------------~g~------~-~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 382 M----------------HCT------F-ICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp E----------------CCS------T-TCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred E----------------cCC------C-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 2 111 1 123445567788888888877754
No 59
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=118.19 Aligned_cols=119 Identities=16% Similarity=0.022 Sum_probs=95.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+||+|+|+|++|||+.+|+.|++.+ + .|++++++++.+. +.+++.+++.|||++|
T Consensus 39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~-~g~~v~v~~l~~~---------------------~~~~l~~~~~vI~~ts 95 (219)
T 3hr4_A 39 SRVRVTILFATETGKSEALAWDLGALF-S-CAFNPKVVCMDKY---------------------RLSCLEEERLLLVVTS 95 (219)
T ss_dssp TSCEEEEEEECSSSHHHHHHHHHHHHH-T-TTSEEEEEEGGGC---------------------CGGGGGTCSEEEEEEE
T ss_pred cCCcEEEEEECCchHHHHHHHHHHHHH-H-cCCCeEEEEcccC---------------------CHhHhccCCeEEEEEe
Confidence 478999999999999999999999998 4 6899999998764 2456789999999999
Q ss_pred cc-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 138 TR-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 138 tY-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
|| .|.+|..++.|++.+... ...++|+.+++|+.+.+....--.....+.+.|..+|+..+.
T Consensus 96 TyG~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~ 158 (219)
T 3hr4_A 96 TFGNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLT 158 (219)
T ss_dssp CBTTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESS
T ss_pred ccCCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEee
Confidence 99 788999999999987532 225789999999975442222223457788888888988764
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.50 E-value=1.3e-13 Score=136.33 Aligned_cols=150 Identities=16% Similarity=0.015 Sum_probs=114.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHcc-CCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhc-CEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVD-GVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEA-DGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~-~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~A-D~II~G 135 (260)
.|+||+|+|+|++|||+.+|+.|++.+. + .|++++++++.+. +.+++.++ |.|||+
T Consensus 48 ~~~ki~IlY~S~tGnte~~A~~ia~~l~~~-~g~~v~v~~l~~~---------------------~~~~l~~~~~~vi~~ 105 (682)
T 2bpo_A 48 NNKNYLVLYASQTGTAEGFAKAFSKELVAK-FNLNVMCADVENY---------------------DFESLNDVPVIVSIF 105 (682)
T ss_dssp TTCSEEEEEECSSSHHHHHHHHHHHHHHHH-HCCCEEEEETTSS---------------------CGGGGGGCCSEEEEE
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHhHHh-cCCceEEeehHHC---------------------CHHHHhhcCCeEEEE
Confidence 5889999999999999999999999998 6 7899999999874 24567789 999999
Q ss_pred cccc-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCccccCCcccccc
Q 024934 136 FPTR-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMD 214 (260)
Q Consensus 136 sPtY-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~ 214 (260)
+||| +|.++..++.|++.+...+ ...|+||++++|+.+....+........+.+.|..+|+..+.....
T Consensus 106 ~sT~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~--------- 175 (682)
T 2bpo_A 106 ISTYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGE--------- 175 (682)
T ss_dssp EECBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE---------
T ss_pred eCccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEE---------
Confidence 9999 8999999999999986432 2358999999999643222222335678888899999887753211
Q ss_pred ccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024934 215 SIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAAVVKK 256 (260)
Q Consensus 215 ~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~~~~~ 256 (260)
. |. .+ ++..+.++.+++.|...+..
T Consensus 176 ------------~--D~--~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 176 ------------A--DD--GA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp ------------E--ET--TT-TCHHHHHHHHHHHHHHHHHH
T ss_pred ------------E--ec--CC-cccHHHHHHHHHHHHHHHHh
Confidence 0 11 23 45567788888888776644
No 61
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.29 E-value=5.5e-12 Score=97.78 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=76.9
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccC-
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRY- 140 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~- 140 (260)
++|+|+|++|||+++|+.|+ + .| + ++.+ +.+ .+|.||||+|||+
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~---~~--~---~i~~------------------------~~~-~~~~ii~g~pt~~~ 45 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--M---PA--V---QIGE------------------------DLV-IDEDFILITYTTGF 45 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--S---CE--E---ECCT------------------------TCC-CCSCEEEEECCBTT
T ss_pred CEEEEECCChhHHHHHHHhc--c---cC--C---CcCc------------------------ccc-cCCCEEEEEeecCC
Confidence 47999999999999999998 3 22 2 3310 112 4899999999995
Q ss_pred CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCC-hHHHHHHHHHHHHhcCcEEecCccccCCccccccccCCC
Q 024934 141 GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG-QETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGG 219 (260)
Q Consensus 141 g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg-~e~~l~~l~~~l~~~gm~vV~~~~~~~~~~~~~~~~~~g 219 (260)
|.+|..++.|++. +++|.+++|+++....+. -......+.+.+. . ...+.
T Consensus 46 g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~---~~~~~-------------- 96 (119)
T 2xod_A 46 GNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---V---PIVSK-------------- 96 (119)
T ss_dssp TBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---C---CEEEE--------------
T ss_pred CcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---C---ccEEE--------------
Confidence 9999999999975 457899999885321111 1122344444332 1 00111
Q ss_pred cccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 024934 220 SPYGAGVFAGDGTREPSETELALAEHQGKYMA 251 (260)
Q Consensus 220 ~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la 251 (260)
+ ...|++++++.++.++++++
T Consensus 97 -------~----~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 97 -------F----ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp -------E----ETTCCHHHHHHHHHHHHHHT
T ss_pred -------E----ecCCCHHHHHHHHHHHHHhc
Confidence 1 12588999999999998875
No 62
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.27 E-value=2e-11 Score=119.45 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=93.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh--hcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLV--EADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~--~AD~II~Gs 136 (260)
.++|+|+|+|++|||+.+|+.|++.+.+ .|++++++++.+.. +.++ ..+. +++.|||++
T Consensus 18 ~~~i~I~YgS~tGnte~~A~~la~~l~~-~g~~~~v~~~~~~~----------------~~~l--~~~~~~~~~~vi~~~ 78 (618)
T 3qe2_A 18 GRNIIVFYGSQTGTAEEFANRLSKDAHR-YGMRGMSADPEEYD----------------LADL--SSLPEIDNALVVFCM 78 (618)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHGGG-GTCCEEEECGGGSC----------------GGGG--GGGGGSTTCEEEEEE
T ss_pred CCeEEEEEECChhHHHHHHHHHHHHHHh-CCCceEEechHHcC----------------HHHh--hhcccccCcEEEEEc
Confidence 5689999999999999999999999988 89999998887642 1122 2222 689999999
Q ss_pred ccc-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEec
Q 024934 137 PTR-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 137 PtY-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
||| .|.+|..++.|++.+... ...|+||.+++|+.+-...+.--.....+.+.|..+|...+.
T Consensus 79 sT~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~ 142 (618)
T 3qe2_A 79 ATYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIF 142 (618)
T ss_dssp ECBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESS
T ss_pred CccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEee
Confidence 999 799999999999987531 146899999999953221122223456677788888988764
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.14 E-value=7.8e-10 Score=109.43 Aligned_cols=121 Identities=14% Similarity=0.015 Sum_probs=93.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+|++|+|+|.+|||+.+|+.|++.+. .|++++++++.++ +..+|..++.|||+++
T Consensus 10 ~~~k~~IlY~S~TG~te~~A~~l~~~l~--~~~~~~v~~m~~~---------------------d~~~l~~~~~vl~vts 66 (688)
T 1tll_A 10 KRVKATILYATETGKSQAYAKTLCEIFK--HAFDAKAMSMEEY---------------------DIVHLEHEALVLVVTS 66 (688)
T ss_dssp CSCEEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEETTTS---------------------CTTSGGGCSEEEEEEC
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHh--cCCCcEEeecccC---------------------ChhHhccCceEEEEEc
Confidence 4679999999999999999999999995 5889999999774 2345678999999999
Q ss_pred cc-CCCchHHHHHHHHHhccccc----------------------------------------CCCCCCCcEEEEEeeCC
Q 024934 138 TR-YGCMAAQMKAFFDSTGMLWK----------------------------------------EGKLVGKPAGFFVSTGT 176 (260)
Q Consensus 138 tY-~g~~~~~mK~flD~~~~l~~----------------------------------------~~~l~gK~~~if~s~G~ 176 (260)
|| +|.+|..+..|++.+..... ...|.|+.+++|+.+-.
T Consensus 67 T~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds 146 (688)
T 1tll_A 67 TFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSR 146 (688)
T ss_dssp CBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECT
T ss_pred ccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccC
Confidence 99 89999999999998754310 12588999999996522
Q ss_pred CCCChHHHHHHHHHHHHhcCcEEec
Q 024934 177 QGGGQETTAWTAITQLAHHGMLFVP 201 (260)
Q Consensus 177 ~~Gg~e~~l~~l~~~l~~~gm~vV~ 201 (260)
....--.....+.+.|..+|...+.
T Consensus 147 ~Y~~F~~~~k~ld~~L~~lGa~rl~ 171 (688)
T 1tll_A 147 AYPHFCAFGHAVDTLLEELGGERIL 171 (688)
T ss_dssp TSSSTTHHHHHHHHHHHHTTCEESS
T ss_pred chHHHHHHHHHHHHHHHHcCCceee
Confidence 1111122456778888888887764
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=98.71 E-value=2e-08 Score=80.08 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.|+++|+|+|.+|||+.+|+.|.+ . . .+++.+ .+...|.+||++||
T Consensus 8 ~m~i~I~Y~S~TGNt~~vA~~l~~-----~--~--~~~i~~-------------------------~~~~~~~~ilv~pT 53 (139)
T 1rlj_A 8 NAMVQIIFDSKTGNVQRFVNKTGF-----Q--Q--IRKVDE-------------------------MDHVDTPFVLVTYT 53 (139)
T ss_dssp HSCCEEEECCSSSHHHHHHTTSCC-----S--E--EEETTS-------------------------CSCCCSCEEEEECC
T ss_pred CCEEEEEEECCChhHHHHHHHhcc-----c--c--ceEecc-------------------------ccccCCCEEEEEcC
Confidence 457899999999999999998642 1 0 233321 13455789999999
Q ss_pred c-CCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeC
Q 024934 139 R-YGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTG 175 (260)
Q Consensus 139 Y-~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G 175 (260)
| .|.+|..+..|++.. .++..++++++.
T Consensus 54 yG~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd 82 (139)
T 1rlj_A 54 TNFGQVPASTQSFLEKY---------AHLLLGVAASGN 82 (139)
T ss_dssp BGGGBCCHHHHHHHHHH---------GGGEEEEEEEEC
T ss_pred cCCCcCcHHHHHHHHhC---------CCCEEEEEecCC
Confidence 9 799999999999742 245677776543
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=98.33 E-value=5.6e-07 Score=72.61 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=55.3
Q ss_pred hhhcCEEEEEccccC-----CCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCC-CCh-HHHHHHHHHHHHhcCcE
Q 024934 126 LVEADGFLFGFPTRY-----GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQG-GGQ-ETTAWTAITQLAHHGML 198 (260)
Q Consensus 126 l~~AD~II~GsPtY~-----g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~-Gg~-e~~l~~l~~~l~~~gm~ 198 (260)
+...+-+||++|||. |.+|.++..|++... ..++..++++++ .++ |.+ -.+...+.+.+ +.
T Consensus 56 ~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsG-N~nfg~~Fc~A~d~ia~k~---~v- 123 (153)
T 3n3a_C 56 IQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASG-NRNFGEAYGRAGDVIARKC---GV- 123 (153)
T ss_dssp CCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEE-CGGGGGGTTHHHHHHHHHH---TC-
T ss_pred cccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecC-CCchhHHHHHHHHHHHHHh---CC-
Confidence 346789999999997 999999999998542 234566777764 332 211 01233344433 21
Q ss_pred EecCccccCCccccccccCCCcccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024934 199 FVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGTREPSETELALAEHQGKYMAA 252 (260)
Q Consensus 199 vV~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~g~~~p~e~~le~a~~~G~~la~ 252 (260)
+.-+. + +..++++|.+.++.+.+++.+
T Consensus 124 --P~l~k---------------------f----EL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 124 --PWLYR---------------------F----ELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp --CEEEE---------------------E----ETTCCHHHHHHHHHHHHHHHH
T ss_pred --CeEEE---------------------E----eCCCCHHHHHHHHHHHHHHHh
Confidence 21111 1 235889999999998887754
No 66
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=96.27 E-value=0.0072 Score=45.53 Aligned_cols=66 Identities=24% Similarity=0.170 Sum_probs=49.2
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
||||++|-.-++| ||...|+.+.+..++ .|+++.+---...-. -+.++.+++.+||+|||++
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~-~G~~ikVEtqgs~g~---------------~n~Lt~~~I~~AD~VIia~ 65 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKK-MGNLIKVETQGATGI---------------ENELTEKDVNIGEVVIFAV 65 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHH-HTCEEEEEEEETTEE---------------SSCCCHHHHHHCSEEEEEE
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHH-CCCEEEEEEecCccc---------------cCCCCHHHHhhCCEEEEec
Confidence 5899999777777 888889999999988 898876644332100 0124578999999999998
Q ss_pred cccC
Q 024934 137 PTRY 140 (260)
Q Consensus 137 PtY~ 140 (260)
.+-.
T Consensus 66 d~~v 69 (106)
T 2m1z_A 66 DTKV 69 (106)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8654
No 67
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=96.24 E-value=0.008 Score=45.64 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.||||+.|-..++| ||...++.+.+..++ .|+++.+--=...-. -+.++.+++.+||+|||.
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~-~G~~ikVEtqGs~G~---------------~n~Lt~~~I~~Ad~VIiA 67 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVE-AGYEVKIETQGADGI---------------QNRLTAQDIAEATIIIHS 67 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TSSEEEEEEEETTEE---------------ESCCCHHHHHHCSEEEEE
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCc---------------CCCCCHHHHHhCCEEEEE
Confidence 36899999998988 899899999999988 898876633222100 012457899999999999
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
+-+-
T Consensus 68 ~d~~ 71 (111)
T 2kyr_A 68 VAVT 71 (111)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 8765
No 68
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=96.14 E-value=0.007 Score=45.92 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEE--EcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLY--RVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li--~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
.|+||+++++|..|.+..++..+.+.+.+ .|+++++. ++.+ + ...+.++|.||.+
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~-~gi~~~V~~~~~~~---------------------~-~~~~~~~DlIist 76 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE---------------------I-ETYMDGVHLICTT 76 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHH-TTCCEEEEEECTTT---------------------T-TTSTTSCSEEEES
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEecHHH---------------------H-hhccCCCCEEEEC
Confidence 58899999999999999999999999988 78765433 3333 1 2235689988888
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
.++.
T Consensus 77 ~~l~ 80 (113)
T 1tvm_A 77 ARVD 80 (113)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 8765
No 69
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=96.11 E-value=0.0078 Score=45.19 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+|||+++++.-+.+ .+++.+.+.+++ .|+++++....-. ++ .+.+.+||.|+++..+
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~-~gi~~~i~a~~~~-------------------~~-~~~~~~~Dvil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEK-YEVPVIIEAFPET-------------------LA-GEKGQNADVVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHH-SCCSEEEEEECSS-------------------ST-THHHHHCSEEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHH-CCCCeEEEEecHH-------------------HH-HhhccCCCEEEEccch
Confidence 679999999976655 899999999998 8988776655421 23 4557889977766543
No 70
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.41 E-value=0.024 Score=42.59 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.|||+.|-..++| ||...++.+.+..++ .|+++.+--=...-. -+.++.+++.+||+|||..
T Consensus 2 ~~kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~G~---------------~n~Lt~~~I~~Ad~VIiA~ 65 (106)
T 2r48_A 2 NAKLLAITSCPNGIAHTYMAAENLQKAADR-LGVSIKVETQGGIGV---------------ENKLTEEEIREADAIIIAA 65 (106)
T ss_dssp CCEEEEEEECSSCSHHHHHHHHHHHHHHHH-HTCEEEEEEEETTEE---------------ESCCCHHHHHHCSEEEEEE
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCc---------------cCCCCHHHHHhCCEEEEEe
Confidence 4799999999988 899999999999988 898876522211100 0124578999999999998
Q ss_pred ccc
Q 024934 137 PTR 139 (260)
Q Consensus 137 PtY 139 (260)
-+-
T Consensus 66 d~~ 68 (106)
T 2r48_A 66 DRS 68 (106)
T ss_dssp SSC
T ss_pred CCc
Confidence 754
No 71
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=95.11 E-value=0.017 Score=43.33 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.|||+++++|..|++ .+++.+.+.+.+ .|+++++....- .++ .+.+.++|.|+.+.++
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~-~gi~~~i~~~~~-------------------~~~-~~~~~~~D~Ii~t~~l 61 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKS-KNINATIEAIAE-------------------TRL-SEVVDRFDVVLLAPQS 61 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHH-HTCSEEEEEECS-------------------TTH-HHHTTTCSEEEECSCC
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHH-CCCCeEEEEecH-------------------HHH-HhhcCCCCEEEECCcc
Confidence 367999999988888 999999999988 787655433322 112 3446789988777766
Q ss_pred cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe--eCCCCCChHHHHHHHHHHHH
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS--TGTQGGGQETTAWTAITQLA 193 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s--~G~~~Gg~e~~l~~l~~~l~ 193 (260)
.+. -..++...+. .++|+..+.. +|. -+.+..+..+.+.+.
T Consensus 62 ~~~--~~~~~~~~~~----------~~~pv~~I~~~~y~~--~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 62 RFN--KKRLEEITKP----------KGIPIEIINTIDYGT--MNGEKVLQLAINAFN 104 (109)
T ss_dssp SSH--HHHHHHHHHH----------HTCCEEECCHHHHHH--TCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHhcc----------cCCCEEEEChHHhcc--CCHHHHHHHHHHHHh
Confidence 432 3334433332 2567655444 221 123445555555544
No 72
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=95.07 E-value=0.031 Score=41.96 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=43.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCce-EEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVE-GLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~e-v~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.|+||+++++|..|.+..++..+.+.+.+ .|++ +++....- .++ .+.+.++|.||.+.
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~-~gi~~~~i~~~~~-------------------~~~-~~~~~~~DlIi~t~ 75 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQ-LGVSDIESASCSV-------------------GEA-KGLASNYDIVVASN 75 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHH-TTCCCEEEEEECH-------------------HHH-HHHGGGCSEEEEET
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHH-cCCCeEEEEEeeH-------------------HHH-hhccCCCcEEEECC
Confidence 58899999999888888888899999988 7776 54333221 122 33467899888877
Q ss_pred ccc
Q 024934 137 PTR 139 (260)
Q Consensus 137 PtY 139 (260)
++-
T Consensus 76 ~l~ 78 (110)
T 3czc_A 76 HLI 78 (110)
T ss_dssp TTG
T ss_pred chH
Confidence 654
No 73
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.01 E-value=0.022 Score=42.87 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCeEEEEEecCch--hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYG--HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.|||+.|-..++| ||...++.+.+..++ .|+++.+--=...-. -+.++.+++.+||+|||..
T Consensus 2 ~~kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~G~---------------~n~Lt~~~I~~Ad~VIiA~ 65 (106)
T 2r4q_A 2 NAKILAVTACPTGIAHTFMAADALKEKAKE-LGVEIKVETNGSSGI---------------KHKLTAQEIEDAPAIIVAA 65 (106)
T ss_dssp -CCEEEEEECSCC--CHHHHHHHHHHHHHH-HTCCEEEEEEETTEE---------------ESCCCHHHHHHCSCEEEEE
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCc---------------cCCCCHHHHHhCCEEEEEe
Confidence 4789999999988 899999999999988 888775522211100 0124578999999999998
Q ss_pred ccc
Q 024934 137 PTR 139 (260)
Q Consensus 137 PtY 139 (260)
-+-
T Consensus 66 d~~ 68 (106)
T 2r4q_A 66 DKQ 68 (106)
T ss_dssp SSC
T ss_pred CCc
Confidence 754
No 74
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=94.22 E-value=0.074 Score=39.98 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=55.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++||++++.+. ..|..|++.+.+.+++ .|+++++...... ++ .+.+.++|.|++|--
T Consensus 5 ~~mkIlL~C~aG-mSTsllv~km~~~a~~-~gi~v~i~a~~~~-------------------~~-~~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 5 KELKVLVLCAGS-GTSAQLANAINEGANL-TEVRVIANSGAYG-------------------AH-YDIMGVYDLIILAPQ 62 (108)
T ss_dssp CCEEEEEEESSS-SHHHHHHHHHHHHHHH-HTCSEEEEEEETT-------------------SC-TTTGGGCSEEEECGG
T ss_pred cCceEEEECCCC-CCHHHHHHHHHHHHHH-CCCceEEEEcchH-------------------HH-HhhccCCCEEEEChH
Confidence 478999999765 5677799999999988 8999988653321 12 345678999998755
Q ss_pred ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 138 TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
+.+. -..++...+ -.|+|+.++-.
T Consensus 63 V~y~--~~~ik~~~~----------~~~ipV~vI~~ 86 (108)
T 3nbm_A 63 VRSY--YREMKVDAE----------RLGIQIVATRG 86 (108)
T ss_dssp GGGG--HHHHHHHHT----------TTTCEEEECCH
T ss_pred HHHH--HHHHHHHhh----------hcCCcEEEeCH
Confidence 5432 223343332 24788876643
No 75
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=93.21 E-value=0.11 Score=45.11 Aligned_cols=74 Identities=7% Similarity=-0.132 Sum_probs=44.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|+|||||-+|.+. .-+..+.+.|++ .|++|+.++..+. +. +.++|.+||+||+.-.
T Consensus 3 ~m~~vLiV~g~~~~---~~a~~l~~aL~~-~g~~V~~i~~~~~------------------~~-~~~~L~~yDvIIl~d~ 59 (259)
T 3rht_A 3 AMTRVLYCGDTSLE---TAAGYLAGLMTS-WQWEFDYIPSHVG------------------LD-VGELLAKQDLVILSDY 59 (259)
T ss_dssp ---CEEEEESSCTT---TTHHHHHHHHHH-TTCCCEEECTTSC------------------BC-SSHHHHTCSEEEEESC
T ss_pred CCceEEEECCCCch---hHHHHHHHHHHh-CCceEEEeccccc------------------cc-ChhHHhcCCEEEEcCC
Confidence 58999999766432 233445555555 6889988876542 11 3578999999999842
Q ss_pred ccCCCchHHHHHHHHHh
Q 024934 138 TRYGCMAAQMKAFFDST 154 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~ 154 (260)
..+.-.+.+++.+.+.+
T Consensus 60 ~~~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 60 PAERMTAQAIDQLVTMV 76 (259)
T ss_dssp CGGGBCHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHH
Confidence 22112245556665554
No 76
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=91.52 E-value=0.17 Score=38.92 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=30.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCc-eEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV-EGLL 94 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~-ev~l 94 (260)
.|+||++++++..|.+..++..+.+.+.+ .|+ ++++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e-~gi~~~~V 48 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQD-AGLSQISV 48 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHH-TTCTTSEE
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHH-CCCceEEE
Confidence 58899999999999888888999999987 676 5444
No 77
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=89.63 E-value=0.25 Score=40.54 Aligned_cols=106 Identities=12% Similarity=-0.092 Sum_probs=50.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCC-CCCccccc--HhhhhhcCEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPR-DDDIPEIS--AADLVEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~-~dd~~~i~--~~~l~~AD~II~ 134 (260)
+|+||+|+-+- |..+.=+-...+.|++ .|++++++.+.......+.....-... +..+.++. .....+||+||+
T Consensus 3 ~M~kV~ill~d--Gfe~~E~~~p~~vl~~-ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvv 79 (194)
T 4gdh_A 3 HMVKVCLFVAD--GTDEIEFSAPWGIFKR-AEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAII 79 (194)
T ss_dssp --CCEEEEEET--TCCHHHHHHHHHHHHH-TTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEE
T ss_pred CCCEEEEEECC--CcCHHHHHHHHHHHHH-CCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEE
Confidence 69999988864 4333223334455666 788888888764321111110000000 01111111 223578999999
Q ss_pred Ec--c-ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEE
Q 024934 135 GF--P-TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFV 172 (260)
Q Consensus 135 Gs--P-tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~ 172 (260)
-. + .+...-...+..|+.+.. .-.+|+++.++
T Consensus 80 PGG~~~~~~l~~~~~l~~~l~~~~------~~~~k~iaaiC 114 (194)
T 4gdh_A 80 PGGGLGAKTLSTTPFVQQVVKEFY------KKPNKWIGMIC 114 (194)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHT------TCTTCEEEEEG
T ss_pred CCCchhHhHhhhCHHHHHHHHHhh------hcCCceEEeec
Confidence 42 2 222233455666665532 11356665544
No 78
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=88.49 E-value=1.1 Score=38.07 Aligned_cols=41 Identities=15% Similarity=0.000 Sum_probs=30.7
Q ss_pred CCeEEEEEecC----------chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSM----------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~----------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|+|||||..|. +|....=+-...+.|++ .|++|+++.....
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~iaS~~g~ 53 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEK-HGFEVDFVSETGG 53 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHT-TTCEEEEEESSSC
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 89999998773 46555555566777887 8999999987643
No 79
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=86.47 E-value=4.5 Score=39.70 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=64.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..+||+|+.....|..+.-+..+.+.|++ .|++++++....-. . .|.... ...-.++|+||+-..
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~--------~-----vD~t~~-~~~s~~fDAVvlPGG 592 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXAN--------N-----VDETYS-ASDAVQFDAVVVADG 592 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCT--------T-----CCEEST-TCCGGGCSEEEECTT
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCc--------c-----cccchh-cCCccccCeEEecCC
Confidence 46789988755588888889999999999 99999999885321 0 111111 123568999999766
Q ss_pred ccC-------------------CCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 138 TRY-------------------GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 138 tY~-------------------g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
... ....+.+..|+..... .||+++.++.+
T Consensus 593 ~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~-------~gKpIaAIc~a 641 (688)
T 2iuf_A 593 AEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFR-------FGKTVGALGSG 641 (688)
T ss_dssp CGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHH-------HTCEEEEEGGG
T ss_pred CcccccccccccccccccchhhcccChHHHHHHHHHHH-------cCCEEEEECch
Confidence 432 2345667777776532 58999887653
No 80
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=85.85 E-value=4.1 Score=34.74 Aligned_cols=78 Identities=5% Similarity=-0.019 Sum_probs=46.4
Q ss_pred CCeEEEEEecCchhHHH---------HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhc
Q 024934 59 KLKIFIVFYSMYGHVEG---------LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEA 129 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~---------lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~A 129 (260)
..||||...-.+..... +...|++.|++ .|++|+...+.+.. ...+.+.|.++
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~-~gf~V~~~t~dd~~-----------------~~~~~~~L~~~ 68 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAE-AGFDAATAVLDEPE-----------------HGLTDEVLDRC 68 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHH-TTCEEEEEESSSGG-----------------GGCCHHHHHTC
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhh-CCcEEEEEeccCcc-----------------ccCCHhHHhcC
Confidence 46888876433332212 24455777877 78999988765420 11235679999
Q ss_pred CEEEEEccccCCCc-hHHHHHHHHHh
Q 024934 130 DGFLFGFPTRYGCM-AAQMKAFFDST 154 (260)
Q Consensus 130 D~II~GsPtY~g~~-~~~mK~flD~~ 154 (260)
|+||+-.-+-.+.+ +.+.++|.+.+
T Consensus 69 DvvV~~~~~~~~~l~~~~~~al~~~V 94 (252)
T 1t0b_A 69 DVLVWWGHIAHDEVKDEVVERVHRRV 94 (252)
T ss_dssp SEEEEECSSCGGGSCHHHHHHHHHHH
T ss_pred CEEEEecCCCCCcCCHHHHHHHHHHH
Confidence 99998421222233 44566666655
No 81
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=83.77 E-value=5.6 Score=34.52 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCCeEEEEEecCchh-HHHHHHHHHHHccCCCC-ceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGH-VEGLAKRMKKGVDGVDG-VEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~Gn-T~~lA~~i~~~l~~~~G-~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
...|||||.+.. +| -......|++.|++ .| ++|++..-.+.. .+...+ .+.|.++|+||+.
T Consensus 3 ~~~kvLiv~G~~-~H~~~~~~~~l~~~l~~-~g~f~V~~~~d~~~~--------------~d~~~f-~~~L~~~D~vV~~ 65 (281)
T 4e5v_A 3 KPIKTLLITGQN-NHNWQVSHVVLKQILEN-SGRFDVDFVISPEQG--------------KDMSGF-VLDFSPYQLVVLD 65 (281)
T ss_dssp CCEEEEEEESCC-SSCHHHHHHHHHHHHHH-TTSEEEEEEECCCTT--------------SCCTTC-CCCCTTCSEEEEC
T ss_pred CceEEEEEcCCC-CCChHHHHHHHHHHHHh-cCCEEEEEEeCCccc--------------cchhHH-hhhhhcCCEEEEe
Confidence 357899996543 33 56677788888877 66 888887643210 011122 2468899999974
Q ss_pred ccccCCCc-hHHHHHHHHHh
Q 024934 136 FPTRYGCM-AAQMKAFFDST 154 (260)
Q Consensus 136 sPtY~g~~-~~~mK~flD~~ 154 (260)
+. ...+ ..+.++|.+.+
T Consensus 66 ~~--~~~l~~~~~~~l~~yV 83 (281)
T 4e5v_A 66 YN--GDSWPEETNRRFLEYV 83 (281)
T ss_dssp CC--SSCCCHHHHHHHHHHH
T ss_pred CC--CCcCCHHHHHHHHHHH
Confidence 42 2222 56777777766
No 82
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=80.32 E-value=4 Score=34.94 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=31.6
Q ss_pred CCCeEEEEEecCch---hHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYG---HVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~G---nT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++|||+|+++.... -...-++.+.+.+++ .|+++..+++.+
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNE 45 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSS
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccC
Confidence 47899999976532 223447889999998 899999999874
No 83
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=79.81 E-value=3.5 Score=35.04 Aligned_cols=41 Identities=17% Similarity=0.012 Sum_probs=29.1
Q ss_pred CCeEEEEEecC----------chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSM----------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~----------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|+|||||..|. +|.-..=+-.....|++ .|++|++......
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA-AGFEVDVASETGT 59 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEEESSSC
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 78999998873 25444444455666777 8999999997653
No 84
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=75.23 E-value=2.6 Score=34.89 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=40.2
Q ss_pred CCeEEEEE-ecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVF-YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy-~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
..||++|= +|..-..+...+.+.+.++. .|++++++++.+..+ .++ .+.|.+||+|+|+-
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~-lG~~v~~~~i~~~~~----------------~~~-~~~l~~ad~I~l~G- 87 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALES-LGLLVEELDIATESL----------------GEI-TTKLRKNDFIYVTG- 87 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHH-TTCEEEECCTTTSCH----------------HHH-HHHHHHSSEEEECC-
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHH-cCCeEEEEEecCCCh----------------HHH-HHHHHhCCEEEECC-
Confidence 47888774 34210111233444555666 688888887765211 122 47799999999955
Q ss_pred ccCCCchHHHHHH
Q 024934 138 TRYGCMAAQMKAF 150 (260)
Q Consensus 138 tY~g~~~~~mK~f 150 (260)
|+....|+.+
T Consensus 88 ---G~~~~l~~~L 97 (206)
T 3l4e_A 88 ---GNTFFLLQEL 97 (206)
T ss_dssp ---SCHHHHHHHH
T ss_pred ---CCHHHHHHHH
Confidence 5555444443
No 85
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=73.43 E-value=4.9 Score=34.16 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=12.2
Q ss_pred HhhhhhcCEEEEEc
Q 024934 123 AADLVEADGFLFGF 136 (260)
Q Consensus 123 ~~~l~~AD~II~Gs 136 (260)
.++|.++|+|||.-
T Consensus 72 ~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 72 IDELNRYDVIVISD 85 (256)
T ss_dssp HHHHHTCSEEEEES
T ss_pred hhHHhcCCEEEEeC
Confidence 57899999999985
No 86
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=72.94 E-value=3.8 Score=33.32 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=31.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
+||+||=|- .||+..+++++ ++ .|+++++++ + .+++.++|+|||
T Consensus 3 ~~I~iiD~g-~~n~~si~~al----~~-~G~~~~v~~--~-----------------------~~~l~~~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTG-CANISSVKFAI----ER-LGYAVTISR--D-----------------------PQVVLAADKLFL 46 (211)
T ss_dssp CCEEEECCC-CTTHHHHHHHH----HH-TTCCEEEEC--C-----------------------HHHHHHCSEEEE
T ss_pred CEEEEEECC-CChHHHHHHHH----HH-CCCEEEEEC--C-----------------------HHHHhCCCEEEE
Confidence 478888543 36888777765 34 588887642 2 567889999999
No 87
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=72.21 E-value=18 Score=30.83 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=59.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|+||.||= . |+ |...++..+.+ .|.+|.+++............. .. ..... .+.+.++|.||+..|
T Consensus 2 ~m~~I~iiG-~--G~---mG~~~a~~l~~-~G~~V~~~d~~~~~~~~~~~~g-~~----~~~~~-~~~~~~aDvvi~~vp 68 (302)
T 2h78_A 2 HMKQIAFIG-L--GH---MGAPMATNLLK-AGYLLNVFDLVQSAVDGLVAAG-AS----AARSA-RDAVQGADVVISMLP 68 (302)
T ss_dssp -CCEEEEEC-C--ST---THHHHHHHHHH-TTCEEEEECSSHHHHHHHHHTT-CE----ECSSH-HHHHTTCSEEEECCS
T ss_pred CCCEEEEEe-e--cH---HHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHHCC-Ce----EcCCH-HHHHhCCCeEEEECC
Confidence 488988873 3 32 33334444444 5788888876532111111110 00 00111 344678999999998
Q ss_pred ccCCCchHHHHHHHH---HhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc
Q 024934 138 TRYGCMAAQMKAFFD---STGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG 203 (260)
Q Consensus 138 tY~g~~~~~mK~flD---~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~ 203 (260)
. +..++..+. .+.. .+ .++. ++...+ .. ..+...+...+...|..++..+
T Consensus 69 ~-----~~~~~~v~~~~~~~~~-----~l~~~~~---vi~~st--~~-~~~~~~l~~~~~~~g~~~~~~p 122 (302)
T 2h78_A 69 A-----SQHVEGLYLDDDGLLA-----HIAPGTL---VLECST--IA-PTSARKIHAAARERGLAMLDAP 122 (302)
T ss_dssp C-----HHHHHHHHHSSSCGGG-----SSCSSCE---EEECSC--CC-HHHHHHHHHHHHHTTCCEEECC
T ss_pred C-----HHHHHHHHcCchhHHh-----cCCCCcE---EEECCC--CC-HHHHHHHHHHHHHcCCEEEEEE
Confidence 6 335677666 3321 23 3333 233222 11 2233556666666777777654
No 88
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=72.02 E-value=4.6 Score=33.23 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
+|+||++|..- .+++..+++++.+ .|++++++.... +.+++.++|+|||.
T Consensus 12 ~~~~i~~id~~-~~~~~~~~~~l~~-----~G~~~~vv~~~~----------------------~~~~l~~~DglIl~ 61 (212)
T 2a9v_A 12 HMLKIYVVDNG-GQWTHREWRVLRE-----LGVDTKIVPNDI----------------------DSSELDGLDGLVLS 61 (212)
T ss_dssp CCCBEEEEEES-CCTTCHHHHHHHH-----TTCBCCEEETTS----------------------CGGGGTTCSEEEEE
T ss_pred ccceEEEEeCC-CccHHHHHHHHHH-----CCCEEEEEeCCC----------------------CHHHHhCCCEEEEC
Confidence 59999988733 2335556665543 466777776532 13455679999884
No 89
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=70.87 E-value=8.2 Score=32.20 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=42.2
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
...||++|=+.. .+....-.+.+.+.++. .|+++..+++.+ +. .+.|.+||+|+|+-
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~-lG~~~~~v~~~~--------------------d~-~~~l~~ad~I~lpG 87 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAP-LGVNVTGIHRVA--------------------DP-LAAIEKAEIIIVGG 87 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGG-GTCEEEETTSSS--------------------CH-HHHHHHCSEEEECC
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEeccc--------------------cH-HHHHhcCCEEEECC
Confidence 357899886543 22233445555666776 687766554432 11 47899999999986
Q ss_pred cccCCCchHHHHHHHH
Q 024934 137 PTRYGCMAAQMKAFFD 152 (260)
Q Consensus 137 PtY~g~~~~~mK~flD 152 (260)
|+....|+.+-+
T Consensus 88 ----G~~~~~~~~l~~ 99 (229)
T 1fy2_A 88 ----GNTFQLLKESRE 99 (229)
T ss_dssp ----SCHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHH
Confidence 555555554433
No 90
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=70.82 E-value=38 Score=29.02 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=64.4
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
...|+||.|| + .|+ |...++..|.+ .|.+|.+++............. .. ..... .+.+.++|.||+.
T Consensus 18 ~~~m~~I~iI-G--~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~g-~~----~~~~~-~~~~~~aDvvi~~ 84 (310)
T 3doj_A 18 GSHMMEVGFL-G--LGI---MGKAMSMNLLK-NGFKVTVWNRTLSKCDELVEHG-AS----VCESP-AEVIKKCKYTIAM 84 (310)
T ss_dssp CCCSCEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTT-CE----ECSSH-HHHHHHCSEEEEC
T ss_pred cccCCEEEEE-C--ccH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHCC-Ce----EcCCH-HHHHHhCCEEEEE
Confidence 4468999887 3 343 44555555555 6889998887643322221110 00 00111 3456789999999
Q ss_pred ccccCCCchHHHHHHH---HHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 136 FPTRYGCMAAQMKAFF---DSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 136 sPtY~g~~~~~mK~fl---D~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
.|.. ..++..+ +.+.. ....|+. ++...+ .. ..+...+...+...|..+++.+.
T Consensus 85 vp~~-----~~~~~v~~~~~~l~~----~l~~g~~---vv~~st--~~-~~~~~~~~~~~~~~g~~~v~~pv 141 (310)
T 3doj_A 85 LSDP-----CAALSVVFDKGGVLE----QICEGKG---YIDMST--VD-AETSLKINEAITGKGGRFVEGPV 141 (310)
T ss_dssp CSSH-----HHHHHHHHSTTCGGG----GCCTTCE---EEECSC--CC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred cCCH-----HHHHHHHhCchhhhh----ccCCCCE---EEECCC--CC-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 9853 3455555 33321 1123433 333322 11 22345666677777888876543
No 91
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=70.69 E-value=4.3 Score=35.29 Aligned_cols=40 Identities=5% Similarity=0.013 Sum_probs=30.1
Q ss_pred CCCeEEEEE--ecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVF--YSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy--~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.|+|+++|+ .|..|...++.+.+.+.+++ .|++++++.-.
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~-~~~~~~~~~t~ 48 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAA-AFPDLHILHTK 48 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHH-HCSEEEEEECC
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHH-cCCeEEEEEcc
Confidence 588998887 33455666778888888887 78888887654
No 92
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=70.19 E-value=25 Score=34.44 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=58.3
Q ss_pred CCCCeEEEEEecCch-hHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 57 ITKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 57 ~~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
...+||+|+.. .| ..+.-+..+.+.|++ .|++++++....- . + + +..+. ...-..+|+|||-
T Consensus 535 l~grKVaILva--dG~fE~~El~~p~~aL~~-aGa~V~vVsp~~g--~---G---v---D~t~~---~~~s~~fDAVvlP 597 (688)
T 3ej6_A 535 IATLRVGVLST--TKGGSLDKAKALKEQLEK-DGLKVTVIAEYLA--S---G---V---DQTYS---AADATAFDAVVVA 597 (688)
T ss_dssp CTTCEEEEECC--SSSSHHHHHHHHHHHHHH-TTCEEEEEESSCC--T---T---C---CEETT---TCCGGGCSEEEEC
T ss_pred ccCCEEEEEcc--CCCccHHHHHHHHHHHHH-CCCEEEEEeCCCC--C---C---c---ccCcc---cCChhcCcEEEEC
Confidence 35788998874 45 455567788888988 8999999987542 0 0 0 00111 1234689999994
Q ss_pred ccccC----------CCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 136 FPTRY----------GCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 136 sPtY~----------g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
...-. ....+.+..|+..... .+|+++.++.
T Consensus 598 GG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~-------hgKpIAAIch 638 (688)
T 3ej6_A 598 EGAERVFSGKGAMSPLFPAGRPSQILTDGYR-------WGKPVAAVGS 638 (688)
T ss_dssp TTCCTTTSTTTTCCTTSCTTHHHHHHHHHHH-------TTCCEEEEGG
T ss_pred CCcccccccccchhhhccCHHHHHHHHHHHH-------cCCEEEEeCc
Confidence 43221 2334566777766532 5899887764
No 93
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=69.60 E-value=12 Score=30.47 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=25.6
Q ss_pred CCeEEEEEecC--------chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSM--------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~--------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+|+.+|. .|....=+-...+.|+. .|++++++....
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~-ag~~v~~vs~~~ 52 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQE-KGYDVKVASIQG 52 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 37999988753 34333333344555655 689999998764
No 94
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=68.65 E-value=21 Score=30.19 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=58.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
|+||.||=.-.-| ..+|..++ + .|.+|.+++............. .. ..... .+.+.++|.||+..|.
T Consensus 1 M~~I~iiG~G~mG--~~~a~~l~----~-~G~~V~~~dr~~~~~~~~~~~g-~~----~~~~~-~~~~~~advvi~~v~~ 67 (287)
T 3pdu_A 1 MTTYGFLGLGIMG--GPMAANLV----R-AGFDVTVWNRNPAKCAPLVALG-AR----QASSP-AEVCAACDITIAMLAD 67 (287)
T ss_dssp CCCEEEECCSTTH--HHHHHHHH----H-HTCCEEEECSSGGGGHHHHHHT-CE----ECSCH-HHHHHHCSEEEECCSS
T ss_pred CCeEEEEccCHHH--HHHHHHHH----H-CCCeEEEEcCCHHHHHHHHHCC-Ce----ecCCH-HHHHHcCCEEEEEcCC
Confidence 6788887311223 22444433 3 4678888876543222211110 00 00111 3446789999999996
Q ss_pred cCCCchHHHHHHH---HHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 139 RYGCMAAQMKAFF---DSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 139 Y~g~~~~~mK~fl---D~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
. ..++..+ +.+.. .+ +|+. ++...+ .. ..+...+...+...|..++..+.
T Consensus 68 ~-----~~~~~v~~~~~~l~~-----~l~~g~~---vv~~st--~~-~~~~~~~~~~~~~~g~~~~~~pv 121 (287)
T 3pdu_A 68 P-----AAAREVCFGANGVLE-----GIGGGRG---YIDMST--VD-DETSTAIGAAVTARGGRFLEAPV 121 (287)
T ss_dssp H-----HHHHHHHHSTTCGGG-----TCCTTCE---EEECSC--CC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred H-----HHHHHHHcCchhhhh-----cccCCCE---EEECCC--CC-HHHHHHHHHHHHHcCCEEEECCc
Confidence 3 3566666 33321 23 3333 233322 12 22345666677777888776543
No 95
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=67.72 E-value=35 Score=28.61 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=55.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.||||.||= . |+ |...++..+.+ .|.++.+++ ............ .. ..... .+.+.++|.||+.+|
T Consensus 2 ~~m~i~iiG-~--G~---~G~~~a~~l~~-~g~~V~~~~-~~~~~~~~~~~g-~~----~~~~~-~~~~~~~D~vi~~vp 67 (295)
T 1yb4_A 2 NAMKLGFIG-L--GI---MGSPMAINLAR-AGHQLHVTT-IGPVADELLSLG-AV----NVETA-RQVTEFADIIFIMVP 67 (295)
T ss_dssp --CEEEECC-C--ST---THHHHHHHHHH-TTCEEEECC-SSCCCHHHHTTT-CB----CCSSH-HHHHHTCSEEEECCS
T ss_pred CCCEEEEEc-c--CH---HHHHHHHHHHh-CCCEEEEEc-CHHHHHHHHHcC-Cc----ccCCH-HHHHhcCCEEEEECC
Confidence 467888773 2 32 22233333434 577888777 543322222110 00 01111 244678999999998
Q ss_pred ccCCCchHHHHHHHH---HhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc
Q 024934 138 TRYGCMAAQMKAFFD---STGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG 203 (260)
Q Consensus 138 tY~g~~~~~mK~flD---~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~ 203 (260)
... .++..+. .+. ..+ .|+ ++++... +. ......+.+.+...|..+++.+
T Consensus 68 ~~~-----~~~~v~~~~~~l~-----~~l~~~~---~vv~~s~--~~-~~~~~~l~~~~~~~g~~~~~~p 121 (295)
T 1yb4_A 68 DTP-----QVEDVLFGEHGCA-----KTSLQGK---TIVDMSS--IS-PIETKRFAQRVNEMGADYLDAP 121 (295)
T ss_dssp SHH-----HHHHHHHSTTSST-----TSCCTTE---EEEECSC--CC-HHHHHHHHHHHHTTTEEEEECC
T ss_pred CHH-----HHHHHHhCchhHh-----hcCCCCC---EEEECCC--CC-HHHHHHHHHHHHHcCCeEEEcc
Confidence 643 4566665 322 122 233 2333321 22 2233556666666677666543
No 96
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=67.17 E-value=11 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=19.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYR 96 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~ 96 (260)
+|||+||-+ ..+|...+++.+ ++ .|+++++++
T Consensus 2 ~~~I~iid~-~~~~~~~~~~~l----~~-~G~~~~~~~ 33 (200)
T 1ka9_H 2 RMKALLIDY-GSGNLRSAAKAL----EA-AGFSVAVAQ 33 (200)
T ss_dssp -CEEEEECS-SCSCHHHHHHHH----HH-TTCEEEEES
T ss_pred ccEEEEEeC-CCccHHHHHHHH----HH-CCCeEEEec
Confidence 468998843 345776665544 44 577887764
No 97
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=67.02 E-value=5.6 Score=32.62 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCeEEEEEecCchh--HHHHHHHHHH--Hcc--CCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh--hcC
Q 024934 59 KLKIFIVFYSMYGH--VEGLAKRMKK--GVD--GVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLV--EAD 130 (260)
Q Consensus 59 m~KVlIIy~S~~Gn--T~~lA~~i~~--~l~--~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~--~AD 130 (260)
|+||+|+-+..... .....+.+.. .+. + .+.+++++....... .....-... .+ ...+++. ++|
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~-~~~~v~~vs~~~~~v---~~~~G~~i~-~d---~~~~~~~~~~~D 76 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDL-APLKVITVGANKEMI---TTMGGLRIK-PD---ISLDECTLESKD 76 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTC-CCCCEEEEESSSCCE---ECTTCCEEC-CS---EEGGGCCCCTTC
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCC-CCeEEEEEECCCCeE---EcCCCCEEe-cC---cCHHHCCccCCC
Confidence 78998888654221 1223333321 111 3 578899988764311 000000000 01 1134444 899
Q ss_pred EEEE-EccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 131 GFLF-GFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 131 ~II~-GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
+||+ |.+.+.......+..|+.+... .||+++.+++
T Consensus 77 ~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~ 113 (212)
T 3efe_A 77 LLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICG 113 (212)
T ss_dssp EEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETH
T ss_pred EEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcH
Confidence 9998 3333333456677777776531 4566555443
No 98
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=66.72 E-value=7 Score=31.17 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=47.6
Q ss_pred CCCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc-eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEE
Q 024934 57 ITKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV-EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFL 133 (260)
Q Consensus 57 ~~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~-ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II 133 (260)
..+.||+||...-+- -|+.|.+-..+.|.+ .|+ ++++++++... ++|.. .++| ..||+||
T Consensus 15 ~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~~i~v~~VPGaf---------------EiP~a-ak~la~~yDavI 77 (160)
T 2c92_A 15 ASGVRLAIVASSWHGKICDALLDGARKVAAG-CGLDDPTVVRVLGAI---------------EIPVV-AQELARNHDAVV 77 (160)
T ss_dssp CTTCCEEEEEECSSHHHHHHHHHHHHHHHHH-TTCSCCEEEEESSGG---------------GHHHH-HHHHHTSCSEEE
T ss_pred CCCCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCceEEEECCcHH---------------HHHHH-HHHHHhcCCEEE
Confidence 356889999877554 478899999999988 777 78888888652 23333 3333 3799985
Q ss_pred -EEccccCCCc
Q 024934 134 -FGFPTRYGCM 143 (260)
Q Consensus 134 -~GsPtY~g~~ 143 (260)
+|..+.....
T Consensus 78 aLG~VIrG~T~ 88 (160)
T 2c92_A 78 ALGVVIRGQTP 88 (160)
T ss_dssp EEEEEECCSST
T ss_pred EEeeeecCCch
Confidence 5655544443
No 99
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=66.62 E-value=4.7 Score=34.31 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=37.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Ecc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsP 137 (260)
++||+||-.....+...+.+.+ ++ .|++++++++.... . + .+++.++|+||| |+|
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l----~~-~G~~v~v~~~~~~~---------------~---~-p~~~~~~d~lIl~GGp 58 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFL----AG-EHIPFQVLRMDRSD---------------P---L-PAEIRDCSGLAMMGGP 58 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHH----HH-TTCCEEEEEGGGTC---------------C---C-CSCGGGSSEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHH----HH-CCCeEEEEeccCCC---------------c---C-cCccccCCEEEECCCC
Confidence 6789999877777766666664 34 68889999876421 0 1 235678998877 455
No 100
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=66.48 E-value=8 Score=34.33 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=44.9
Q ss_pred ccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCC-CCCCCCcccccHhhhhhcCEEE
Q 024934 55 REITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKV-PPRDDDIPEISAADLVEADGFL 133 (260)
Q Consensus 55 ~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~-~~~~dd~~~i~~~~l~~AD~II 133 (260)
+....|||+|| |+ |++- +.+++.|.+ ..++.+.++.............. ..+-.+...+ .+.+.++|.||
T Consensus 12 ~~g~~mkilvl-Ga--G~vG---~~~~~~L~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l-~~~~~~~DvVi 82 (365)
T 3abi_A 12 IEGRHMKVLIL-GA--GNIG---RAIAWDLKD--EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKL-VEVMKEFELVI 82 (365)
T ss_dssp ----CCEEEEE-CC--SHHH---HHHHHHHTT--TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHH-HHHHTTCSEEE
T ss_pred ccCCccEEEEE-CC--CHHH---HHHHHHHhc--CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHH-HHHHhCCCEEE
Confidence 45578898887 76 5542 333444443 35777777653221111110000 0111222223 45578999999
Q ss_pred EEccccCCCchHHHHHHHHH
Q 024934 134 FGFPTRYGCMAAQMKAFFDS 153 (260)
Q Consensus 134 ~GsPtY~g~~~~~mK~flD~ 153 (260)
-..|-+++ ...++..++.
T Consensus 83 ~~~p~~~~--~~v~~~~~~~ 100 (365)
T 3abi_A 83 GALPGFLG--FKSIKAAIKS 100 (365)
T ss_dssp ECCCGGGH--HHHHHHHHHH
T ss_pred EecCCccc--chHHHHHHhc
Confidence 99998854 3456666654
No 101
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=66.23 E-value=5.4 Score=34.19 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=32.3
Q ss_pred CCeEEEEEec---------------CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYS---------------MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S---------------~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
||||++|..+ ..|-.+..+..+++.|.+ .|+++.++....
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 57 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLE-LGHEVFLLGAPG 57 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHH-TTCEEEEESCTT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 6899999877 246677788888899988 799999987654
No 102
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=65.70 E-value=37 Score=26.28 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=41.1
Q ss_pred cCCCCeEEEEEecCchhH--HHHHHHHHHHccCCCCceEEEEEcCCCC-c-HHHhhcCC-CCCCC-CC-cccccHhhhhh
Q 024934 56 EITKLKIFIVFYSMYGHV--EGLAKRMKKGVDGVDGVEGLLYRVPETL-T-REALDHMK-VPPRD-DD-IPEISAADLVE 128 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~~-~-~~~~~~~~-~~~~~-dd-~~~i~~~~l~~ 128 (260)
+.+|+|||.|+ +||+ .-||+.+.+.+.. ..+++.--=+..-. + +.....+. -..+. .. -..++.+.+.+
T Consensus 17 ~~~~~~VLFVC---~gN~cRSpmAEal~~~~~~-~~~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~h~ar~l~~~~~~~ 92 (148)
T 3rh0_A 17 GSHMKSVLFVC---VGNGGKSQMAAALAQKYAS-DSVEIHSAGTKPAQGLNQLSVESIAEVGADMSQGIPKAIDPELLRT 92 (148)
T ss_dssp ---CCEEEEEE---SSSSSHHHHHHHHHHHHCC-TTSEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCCCCBCCHHHHHH
T ss_pred cCCCCEEEEEC---CCchhHHHHHHHHHHHhcC-CCEEEEecccCCCCCCCHHHHHHHHHcCCCcCCCeeeECCHHHhcC
Confidence 44689999999 5554 4599999988865 45555544343211 1 11111110 00110 11 11234567788
Q ss_pred cCEEEEEccc
Q 024934 129 ADGFLFGFPT 138 (260)
Q Consensus 129 AD~II~GsPt 138 (260)
+|.||--+.-
T Consensus 93 ~DlIitM~~~ 102 (148)
T 3rh0_A 93 VDRVVILGDD 102 (148)
T ss_dssp CSEEEEESSS
T ss_pred CCEEEEecCh
Confidence 9999887643
No 103
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=65.53 E-value=12 Score=30.97 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=25.3
Q ss_pred CCCeEEEEEecC---chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSM---YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|+||+|+-+|. .|....=+-...+.|+. .|.+++++....
T Consensus 5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~-ag~~v~~~s~~g 48 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISR-SGAQAVCFAPDK 48 (232)
T ss_dssp -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 378999988752 34332222334455655 688999998754
No 104
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=64.92 E-value=38 Score=26.90 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC-CcHHHh-hcCCCCCCCCCc---ccccHhhhhhcCEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET-LTREAL-DHMKVPPRDDDI---PEISAADLVEADGF 132 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~-~~~~~~-~~~~~~~~~dd~---~~i~~~~l~~AD~I 132 (260)
.|||.++|.+...|-=..+++.+++ + .|.+|.++.-... ...... ....+....-|+ ..+ .+.+...|.|
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~---~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~-~~~~~~~d~v 77 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLT---Y-TDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXL-EQAVTNAEVV 77 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHH---H-CCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHH-HHHHTTCSEE
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHh---c-CCceEEEEecCccccchhhccCCCceEEEECCCCCHHHH-HHHHcCCCEE
Confidence 4677555565544333445554442 3 5778877764421 111100 000000000122 122 3446788999
Q ss_pred EEEccccCCCchHHHHHHHHHhc
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~ 155 (260)
|......+ +. .+++++.+.
T Consensus 78 v~~ag~~n--~~--~~~~~~~~~ 96 (221)
T 3r6d_A 78 FVGAMESG--SD--MASIVKALS 96 (221)
T ss_dssp EESCCCCH--HH--HHHHHHHHH
T ss_pred EEcCCCCC--hh--HHHHHHHHH
Confidence 98776432 22 677777663
No 105
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=64.90 E-value=28 Score=29.76 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.|+||.||=+ .|+ |...++..+.+ .|.++.+++.... ... .+.+.+||.||+..|
T Consensus 20 ~~~~I~iIGg--~G~---mG~~la~~l~~-~G~~V~~~~~~~~------------------~~~-~~~~~~aDvVilavp 74 (298)
T 2pv7_A 20 DIHKIVIVGG--YGK---LGGLFARYLRA-SGYPISILDREDW------------------AVA-ESILANADVVIVSVP 74 (298)
T ss_dssp TCCCEEEETT--TSH---HHHHHHHHHHT-TTCCEEEECTTCG------------------GGH-HHHHTTCSEEEECSC
T ss_pred CCCEEEEEcC--CCH---HHHHHHHHHHh-CCCeEEEEECCcc------------------cCH-HHHhcCCCEEEEeCC
Confidence 4568877621 333 66666777767 7888888874331 012 355789999999999
Q ss_pred ccCCCchHHHHHHHHHhc
Q 024934 138 TRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~~ 155 (260)
.+. +..+++.+.
T Consensus 75 ~~~------~~~vl~~l~ 86 (298)
T 2pv7_A 75 INL------TLETIERLK 86 (298)
T ss_dssp GGG------HHHHHHHHG
T ss_pred HHH------HHHHHHHHH
Confidence 975 555666553
No 106
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=62.99 E-value=12 Score=31.26 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=25.8
Q ss_pred CCCeEEEEEecC----------chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSM----------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~----------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|+|||||..|. +|....=+-...+.|++ .|.+++++....
T Consensus 2 ~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~-ag~~v~~~s~~g 52 (243)
T 1rw7_A 2 APKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRK-EGFEVDFVSETG 52 (243)
T ss_dssp CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred CCceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 378999998762 33332222334455555 689999988754
No 107
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=62.46 E-value=18 Score=35.74 Aligned_cols=100 Identities=9% Similarity=-0.077 Sum_probs=59.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh--hhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAA--DLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~--~l~~AD~II~G 135 (260)
..+||+|+.. .|..+.-+..+.+.|++ .|++++++....-.. ......... .| ...+ .-..+|+|||-
T Consensus 599 ~grKVaILla--DGfEe~El~~pvdaLr~-AG~~V~vVS~~~g~V---~gs~G~~V~-aD---~t~~~v~s~~fDALVVP 668 (753)
T 3ttv_A 599 KGRVVAILLN--DEVRSADLLAILKALKA-KGVHAKLLYSRMGEV---TADDGTVLP-IA---ATFAGAPSLTVDAVIVP 668 (753)
T ss_dssp TTCEEEEECC--TTCCHHHHHHHHHHHHH-HTCEEEEEESSSSEE---ECTTSCEEE-CC---EETTTSCGGGCSEEEEC
T ss_pred CCCEEEEEec--CCCCHHHHHHHHHHHHH-CCCEEEEEEcCCCeE---EeCCCCEEe-cc---cchhhCCCcCCCEEEEC
Confidence 4678988874 45555566777788887 899999998764211 100000000 01 1122 23468999985
Q ss_pred cc-ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 136 FP-TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 136 sP-tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.. .-.......+..|+.+.. -.+|+++.++.+
T Consensus 669 GGg~~~Lr~d~~vl~~Vre~~-------~~gKpIAAIC~G 701 (753)
T 3ttv_A 669 CGNIADIADNGDANYYLMEAY-------KHLKPIALAGDA 701 (753)
T ss_dssp CSCGGGTTTCHHHHHHHHHHH-------HTTCCEEEEGGG
T ss_pred CCChHHhhhCHHHHHHHHHHH-------hcCCeEEEECch
Confidence 43 122334667788887764 268998887754
No 108
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=62.37 E-value=8.6 Score=30.76 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=9.0
Q ss_pred hhhhcCEEEEEc
Q 024934 125 DLVEADGFLFGF 136 (260)
Q Consensus 125 ~l~~AD~II~Gs 136 (260)
++.++|+|||.-
T Consensus 35 ~l~~~d~iil~G 46 (196)
T 2nv0_A 35 QLNEVDGLILPG 46 (196)
T ss_dssp GGGGCSEEEECC
T ss_pred HHhhCCEEEECC
Confidence 456899999854
No 109
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=60.80 E-value=13 Score=31.72 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=34.3
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
-+..++|.|||.+...|.....+.+.+.+.+ .|+++..+.+..
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~ 179 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALK 179 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 4568899999988777777788888888887 888887777654
No 110
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=60.68 E-value=19 Score=31.67 Aligned_cols=35 Identities=20% Similarity=0.025 Sum_probs=23.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
|+||+||.+.. .++.+++.+++ .|+++.+++....
T Consensus 1 M~~Ililg~g~------~g~~~~~a~~~-~G~~v~~~~~~~~ 35 (380)
T 3ax6_A 1 MKKIGIIGGGQ------LGKMMTLEAKK-MGFYVIVLDPTPR 35 (380)
T ss_dssp CCEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESSTT
T ss_pred CCEEEEECCCH------HHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 78899987532 34445555666 7888888887543
No 111
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=60.40 E-value=14 Score=29.48 Aligned_cols=41 Identities=12% Similarity=0.035 Sum_probs=24.7
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
...|+||+|+-+......+ +-.+.+.|+. .|++++++....
T Consensus 20 ~~~~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~ 60 (193)
T 1oi4_A 20 AGLSKKIAVLITDEFEDSE--FTSPADEFRK-AGHEVITIEKQA 60 (193)
T ss_dssp TTCCCEEEEECCTTBCTHH--HHHHHHHHHH-TTCEEEEEESST
T ss_pred hccCCEEEEEECCCCCHHH--HHHHHHHHHH-CCCEEEEEECCC
Confidence 3457899988764332222 2223444555 688999988764
No 112
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=60.37 E-value=47 Score=30.92 Aligned_cols=123 Identities=12% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcC--CCCC-CCCCcccccHhhhhhcCEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHM--KVPP-RDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~--~~~~-~~dd~~~i~~~~l~~AD~II~ 134 (260)
.|+||.||= .|+ |...++..+.+ .|.+|.+++..........+.. .... ...++.++ .+.+.++|.||+
T Consensus 3 ~~~kIgiIG---lG~---MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~-v~~l~~aDvVil 74 (484)
T 4gwg_A 3 AQADIALIG---LAV---MGQNLILNMND-HGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEM-VSKLKKPRRIIL 74 (484)
T ss_dssp CCBSEEEEC---CSH---HHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHH-HHTBCSSCEEEE
T ss_pred CCCEEEEEC---hhH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHH-HhhccCCCEEEE
Confidence 467887764 332 44445555555 6888998887643222222111 0000 01122222 233345999999
Q ss_pred EccccCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 135 GFPTRYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 135 GsPtY~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
..|.- ..++.+++.+.. .+ +|+ +++..++ +.-. ....+...+...|..+++.+.
T Consensus 75 ~Vp~~-----~~v~~vl~~l~~-----~L~~g~---iIId~st--~~~~-~t~~~~~~l~~~Gi~fvd~pV 129 (484)
T 4gwg_A 75 LVKAG-----QAVDDFIEKLVP-----LLDTGD---IIIDGGN--SEYR-DTTRRCRDLKAKGILFVGSGV 129 (484)
T ss_dssp CSCSS-----HHHHHHHHHHGG-----GCCTTC---EEEECSC--CCHH-HHHHHHHHHHHTTCEEEEEEE
T ss_pred ecCCh-----HHHHHHHHHHHH-----hcCCCC---EEEEcCC--CCch-HHHHHHHHHHhhccccccCCc
Confidence 99874 356666766542 23 233 3444433 2222 224555667778888887654
No 113
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=60.37 E-value=4.6 Score=35.71 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=30.1
Q ss_pred ccCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 55 REITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 55 ~~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
++..|||||++..+..||...++ .++++|.+ .|.+|.++.-
T Consensus 16 ~~~~~MrIl~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 56 (398)
T 3oti_A 16 IEGRHMRVLFVSSPGIGHLFPLI-QLAWGFRT-AGHDVLIAVA 56 (398)
T ss_dssp ---CCCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEES
T ss_pred hhhhcCEEEEEcCCCcchHhHHH-HHHHHHHH-CCCEEEEecc
Confidence 36678999999877778876554 46677777 8999999876
No 114
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=59.98 E-value=12 Score=29.83 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=24.6
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+.++||+|+.+- |....=+-...+.|+. .|.+++++....
T Consensus 3 ~m~kkv~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~~s~~~ 42 (190)
T 4e08_A 3 HMSKSALVILAP--GAEEMEFIIAADVLRR-AGIKVTVAGLNG 42 (190)
T ss_dssp -CCCEEEEEECT--TCCHHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred CCCcEEEEEECC--CchHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 345689888864 3222223344455666 788999998764
No 115
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=59.88 E-value=14 Score=29.70 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=46.1
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhh-----
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVE----- 128 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~----- 128 (260)
.+.||+||...-+- -|+.|.+-..+.|.+ .|+ +++++.++... ++|.. ..+|.+
T Consensus 15 ~~~ri~IV~arfn~~I~~~Ll~gA~~~L~~-~Gv~~~~i~v~~VPGaf---------------EiP~a-ak~la~~~~~~ 77 (168)
T 1ejb_A 15 SKIRVGIIHARWNRVIIDALVKGAIERMAS-LGVEENNIIIETVPGSY---------------ELPWG-TKRFVDRQAKL 77 (168)
T ss_dssp TTCCEEEEECCTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEECSSGG---------------GHHHH-HHHHHHHHHHT
T ss_pred CCCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHH---------------HHHHH-HHHHHhhcccc
Confidence 46789998866543 477888888888887 674 57888988652 23333 345443
Q ss_pred ---cCEEE-EEccccCCCc
Q 024934 129 ---ADGFL-FGFPTRYGCM 143 (260)
Q Consensus 129 ---AD~II-~GsPtY~g~~ 143 (260)
||+|| +|+.+.....
T Consensus 78 ~~~yDavIaLG~VIrG~T~ 96 (168)
T 1ejb_A 78 GKPLDVVIPIGVLIKGSTM 96 (168)
T ss_dssp TCCCSEEEEEEEEECCSSS
T ss_pred CCCcCEEEEecccccCCch
Confidence 89985 5665544443
No 116
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=58.48 E-value=16 Score=29.00 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=32.8
Q ss_pred CeEEEEEecCch-hHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 60 LKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 60 ~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.||+||...-+. -|+.|.+-..+.|.+ .|.++++++++..
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~i~v~~VPGa 53 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDE-AGATYDVVTVPGA 53 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHH-TTCEEEEEEESSG
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCeEEEECCcH
Confidence 689998876554 478899999999988 7888999999875
No 117
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=57.79 E-value=12 Score=30.89 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=20.4
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+||+||-+- .+++..++++ +++ .|++++++.+..
T Consensus 25 ~~I~iiD~g-~~~~~~i~~~----l~~-~G~~~~vv~~~~ 58 (218)
T 2vpi_A 25 GAVVILDAG-AQYGKVIDRR----VRE-LFVQSEIFPLET 58 (218)
T ss_dssp TCEEEEECS-TTTTHHHHHH----HHH-TTCCEEEECTTC
T ss_pred CeEEEEECC-CchHHHHHHH----HHH-CCCEEEEEECCC
Confidence 579988422 3445555554 444 577888877643
No 118
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=57.07 E-value=45 Score=28.36 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=60.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++||.|| + .|+ |...++..|.+ .|.+|.+++............. .... .... .+.+.++|.||+..|
T Consensus 6 ~~~~I~iI-G--~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~~~---~~~~-~e~~~~aDvvi~~vp 73 (303)
T 3g0o_A 6 TDFHVGIV-G--LGS---MGMGAARSCLR-AGLSTWGADLNPQACANLLAEG-ACGA---AASA-REFAGVVDALVILVV 73 (303)
T ss_dssp -CCEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTT-CSEE---ESSS-TTTTTTCSEEEECCS
T ss_pred CCCeEEEE-C--CCH---HHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHcC-Cccc---cCCH-HHHHhcCCEEEEECC
Confidence 46788887 3 343 44455555555 6889988876532211111111 0000 0111 234678999999999
Q ss_pred ccCCCchHHHHHHH---HHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 138 TRYGCMAAQMKAFF---DSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 138 tY~g~~~~~mK~fl---D~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
.. ..++..+ +.+.. .+ .|+. ++...+ .. ..+...+...+...|..+++.+.
T Consensus 74 ~~-----~~~~~v~~~~~~l~~-----~l~~g~i---vv~~st--~~-~~~~~~~~~~~~~~g~~~~~~pv 128 (303)
T 3g0o_A 74 NA-----AQVRQVLFGEDGVAH-----LMKPGSA---VMVSST--IS-SADAQEIAAALTALNLNMLDAPV 128 (303)
T ss_dssp SH-----HHHHHHHC--CCCGG-----GSCTTCE---EEECSC--CC-HHHHHHHHHHHHTTTCEEEECCE
T ss_pred CH-----HHHHHHHhChhhHHh-----hCCCCCE---EEecCC--CC-HHHHHHHHHHHHHcCCeEEeCCC
Confidence 63 3455554 33221 23 2333 333322 11 23345666677777887776443
No 119
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=56.39 E-value=29 Score=27.12 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=25.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHH-HHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQM-KAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~m-K~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-+-...-...+ ..|++.+.. ...++++.++++=
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~~piilv~nK 138 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-----FCPNVPIILVGNK 138 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HSTTCCEEEEEEC
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEec
Confidence 346789999998655432222222 345544432 2347787776663
No 120
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=56.35 E-value=27 Score=27.50 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=43.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||||+=+| -.+...+.+.|.+ .|.+|..+.-....... +. .......-|+.+.+.+.+..+|.||......
T Consensus 1 MkvlVtGat-----G~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~-~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGAT-----GRAGSRILEEAKN-RGHEVTAIVRNAGKITQ-TH-KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTT-----SHHHHHHHHHHHH-TTCEEEEEESCSHHHHH-HC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcCC-----chhHHHHHHHHHh-CCCEEEEEEcCchhhhh-cc-CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 577664323 2344555555555 67888777654321111 00 0010001122222125678899999877654
Q ss_pred CCCc---hHHHHHHHHHhc
Q 024934 140 YGCM---AAQMKAFFDSTG 155 (260)
Q Consensus 140 ~g~~---~~~mK~flD~~~ 155 (260)
.... ....+++++.+.
T Consensus 73 ~~~~~~~~~~~~~l~~a~~ 91 (221)
T 3ew7_A 73 PDEAEKHVTSLDHLISVLN 91 (221)
T ss_dssp TTTTTSHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 3322 234567777663
No 121
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=55.99 E-value=16 Score=27.16 Aligned_cols=71 Identities=14% Similarity=0.035 Sum_probs=39.0
Q ss_pred CeEEEE-EecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 60 LKIFIV-FYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 60 ~KVlII-y~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
.+++|| |+|+.+....++ +.+++ .|+++.++++....|.+ ...+ .+.+..++.||+.==.
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~----~~L~~-~Gi~v~vi~~r~~~P~d-------------~~~l-~~~~~~~~~vvvvE~~ 74 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVI----EDLKE-EGISANLLYLKMFSPFP-------------TEFV-KNVLSSANLVIDVESN 74 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHH----HHHHH-TTCCEEEEEECSSCSCC-------------HHHH-HHHHTTCSCCCCCCCC
T ss_pred CCEEEEEECccHHHHHHHH----HHHHH-CCCceEEEEECeEecCC-------------HHHH-HHHHcCCCEEEEEECC
Confidence 345554 566665544444 44555 68899999998765421 0111 2345566666544333
Q ss_pred cCCCchHHHHH
Q 024934 139 RYGCMAAQMKA 149 (260)
Q Consensus 139 Y~g~~~~~mK~ 149 (260)
+.|.+...++.
T Consensus 75 ~~G~l~~~i~~ 85 (118)
T 3ju3_A 75 YTAQAAQMIKL 85 (118)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 34555555554
No 122
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=55.82 E-value=48 Score=25.39 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=30.0
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|+..+... ...++++.++++=
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 136 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGNK 136 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45578999999987765443334455666665421 2356787776663
No 123
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=55.54 E-value=8.4 Score=30.97 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=29.6
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh--hcCEEEE-Eccc
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLV--EADGFLF-GFPT 138 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~--~AD~II~-GsPt 138 (260)
|+||-. ..+.+..+++++ ++ .|+++++++..+. +.+++. ++|+||| |.|-
T Consensus 4 i~iid~-~~s~~~~~~~~l----~~-~G~~~~v~~~~~~---------------------~~~~~~~~~~dglil~gG~~ 56 (195)
T 1qdl_B 4 TLIIDN-YDSFVYNIAQIV----GE-LGSYPIVIRNDEI---------------------SIKGIERIDPDRLIISPGPG 56 (195)
T ss_dssp EEEEEC-SCSSHHHHHHHH----HH-TTCEEEEEETTTS---------------------CHHHHHHHCCSEEEECCCSS
T ss_pred EEEEEC-CCchHHHHHHHH----Hh-CCCEEEEEeCCCC---------------------CHHHHhhCCCCEEEECCCCC
Confidence 887762 122344455544 33 5788888886531 133444 5999999 6654
No 124
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=55.52 E-value=39 Score=29.14 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=59.6
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
...+|||.|| +. |+ |...++..+.+ .|.+|.+++............ ... ..... .+.+.++|.||+.
T Consensus 28 ~~~~~~I~iI-G~--G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~l~~~-g~~----~~~~~-~e~~~~aDvVi~~ 94 (320)
T 4dll_A 28 DPYARKITFL-GT--GS---MGLPMARRLCE-AGYALQVWNRTPARAASLAAL-GAT----IHEQA-RAAARDADIVVSM 94 (320)
T ss_dssp -CCCSEEEEE-CC--TT---THHHHHHHHHH-TTCEEEEECSCHHHHHHHHTT-TCE----EESSH-HHHHTTCSEEEEC
T ss_pred ccCCCEEEEE-Cc--cH---HHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHHC-CCE----eeCCH-HHHHhcCCEEEEE
Confidence 3357899887 33 22 22333334444 578888887653211111111 000 00111 3446789999999
Q ss_pred ccccCCCchHHHHHHHH--HhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 136 FPTRYGCMAAQMKAFFD--STGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD--~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
.|.. ..++..+. .+.. ...+|+. ++..++ .. ..+...+...+...|..+++.+.
T Consensus 95 vp~~-----~~~~~v~~~~~~~~----~l~~~~~---vi~~st--~~-~~~~~~~~~~~~~~g~~~~~~pv 150 (320)
T 4dll_A 95 LENG-----AVVQDVLFAQGVAA----AMKPGSL---FLDMAS--IT-PREARDHAARLGALGIAHLDTPV 150 (320)
T ss_dssp CSSH-----HHHHHHHTTTCHHH----HCCTTCE---EEECSC--CC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred CCCH-----HHHHHHHcchhHHh----hCCCCCE---EEecCC--CC-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 9853 34555553 2211 0113443 233222 11 22345666677778888886543
No 125
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=55.23 E-value=96 Score=26.22 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
++||.|| +. |+ |...++..+.+ .|.+|.+++............. .. .. -+.+++.++|.||+..|.
T Consensus 15 ~~~I~vI-G~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~-----~~-~~~~~~~~aDvvi~~vp~ 80 (296)
T 3qha_A 15 QLKLGYI-GL--GN---MGAPMATRMTE-WPGGVTVYDIRIEAMTPLAEAG-AT-----LA-DSVADVAAADLIHITVLD 80 (296)
T ss_dssp CCCEEEE-CC--ST---THHHHHHHHTT-STTCEEEECSSTTTSHHHHHTT-CE-----EC-SSHHHHTTSSEEEECCSS
T ss_pred CCeEEEE-Cc--CH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHCC-CE-----Ec-CCHHHHHhCCEEEEECCC
Confidence 3578777 33 32 44455555666 7889999987654333222211 00 00 023444349999999985
Q ss_pred cCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 139 RYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 139 Y~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
. ..++..++.+.. .+ .|+. ++...+ .. ..+...+...+...|..+++.+.
T Consensus 81 ~-----~~~~~v~~~l~~-----~l~~g~i---vv~~st--~~-~~~~~~~~~~~~~~g~~~~~~pv 131 (296)
T 3qha_A 81 D-----AQVREVVGELAG-----HAKPGTV---IAIHST--IS-DTTAVELARDLKARDIHIVDAPV 131 (296)
T ss_dssp H-----HHHHHHHHHHHT-----TCCTTCE---EEECSC--CC-HHHHHHHHHHHGGGTCEEEECCE
T ss_pred h-----HHHHHHHHHHHH-----hcCCCCE---EEEeCC--CC-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 3 346666665532 23 3333 233322 11 22345666777777888876544
No 126
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=54.80 E-value=17 Score=30.12 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=34.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
|||++|-.....+-..+.+++ ++ .|++++++++... +.+ .+++.++|+||+.-
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l----~~-~g~~~~~~~~~~~---------------~~~----p~~~~~~d~lii~G 53 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWA----AL-RGHDVSMTKVYRY---------------EKL----PKDIDDFDMLILMG 53 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHH----HH-TTCEEEEEEGGGT---------------CCC----CSCGGGCSEEEECC
T ss_pred CeEEEEeCCCCCCchHHHHHH----HH-CCCeEEEEeeeCC---------------CCC----CCCccccCEEEECC
Confidence 689999987654444444443 33 6889999998642 111 23467899987753
No 127
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=54.51 E-value=14 Score=29.05 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCCeEEEEEecC-----------chhH--HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh
Q 024934 58 TKLKIFIVFYSM-----------YGHV--EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAA 124 (260)
Q Consensus 58 ~m~KVlIIy~S~-----------~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~ 124 (260)
.|+||+|+.+-. ||++ +.+.+.+.+...+ .|++++.+.-... .-+ +..+ .+
T Consensus 3 ~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~E---geL-----------Id~I-h~ 66 (151)
T 3u80_A 3 AMTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKD-LGLEVEVRQTDDE---AEM-----------VRWM-HQ 66 (151)
T ss_dssp -CEEEEEEECSCC------------CHHHHHHHHHHHHHHHH-TTEEEEEEECSCH---HHH-----------HHHH-HH
T ss_pred CCCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH---HHH-----------HHHH-HH
Confidence 477999999763 6653 3456667777776 7999998886431 000 0111 23
Q ss_pred hhhhcCEEEEEccccC
Q 024934 125 DLVEADGFLFGFPTRY 140 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~ 140 (260)
...++|+|||=---|-
T Consensus 67 a~~~~dgiiINpgA~T 82 (151)
T 3u80_A 67 AADEKTPVVMNPAAFT 82 (151)
T ss_dssp HHHHTCCEEEECTTCC
T ss_pred hhhcCcEEEECcchhh
Confidence 3456899999877776
No 128
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=54.51 E-value=28 Score=27.55 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=46.4
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCC-c---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhc
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDG-V---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEA 129 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G-~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~A 129 (260)
...||+||...-+. -|+.|.+-..+.|.+ .| + ++++++++... ++|.. .+++ ..|
T Consensus 11 ~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~v~~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~y 73 (156)
T 3nq4_A 11 PDARVAITIARFNQFINDSLLDGAVDALTR-IGQVKDDNITVVWVPGAY---------------ELPLA-TEALAKSGKY 73 (156)
T ss_dssp TTCCEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCCTTSEEEEEESSTT---------------THHHH-HHHHHHHCSC
T ss_pred CCCEEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCcccceEEEEcCcHH---------------HHHHH-HHHHHhcCCC
Confidence 46789999877554 478888888888887 67 4 78999998753 23333 3443 359
Q ss_pred CEEE-EEccccCCC
Q 024934 130 DGFL-FGFPTRYGC 142 (260)
Q Consensus 130 D~II-~GsPtY~g~ 142 (260)
|+|| +|+-+....
T Consensus 74 DavIaLG~VIrG~T 87 (156)
T 3nq4_A 74 DAVVALGTVIRGGT 87 (156)
T ss_dssp SEEEEEEEEECCSS
T ss_pred CEEEEeeeeecCCc
Confidence 9985 555544444
No 129
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=54.19 E-value=46 Score=29.55 Aligned_cols=116 Identities=12% Similarity=0.208 Sum_probs=60.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhc---CEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEA---DGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~A---D~II~G 135 (260)
+|||.|| + .|+ |...++..|.+ .|.+|.+++............ ... ....+ .+-+.++ |.||+.
T Consensus 22 ~mkIgiI-G--lG~---mG~~~A~~L~~-~G~~V~v~dr~~~~~~~l~~~-g~~----~~~s~-~e~~~~a~~~DvVi~~ 88 (358)
T 4e21_A 22 SMQIGMI-G--LGR---MGADMVRRLRK-GGHECVVYDLNVNAVQALERE-GIA----GARSI-EEFCAKLVKPRVVWLM 88 (358)
T ss_dssp CCEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHTT-TCB----CCSSH-HHHHHHSCSSCEEEEC
T ss_pred CCEEEEE-C--chH---HHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHC-CCE----EeCCH-HHHHhcCCCCCEEEEe
Confidence 4788777 3 343 44455555555 688898887653211111111 000 00111 2335667 999999
Q ss_pred ccccCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
.|.. . +...++.+.. .+ .|+ +++..++ .. ..+...+...+...|..+++.+.
T Consensus 89 vp~~--~----v~~vl~~l~~-----~l~~g~---iiId~st--~~-~~~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 89 VPAA--V----VDSMLQRMTP-----LLAAND---IVIDGGN--SH-YQDDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp SCGG--G----HHHHHHHHGG-----GCCTTC---EEEECSS--CC-HHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCHH--H----HHHHHHHHHh-----hCCCCC---EEEeCCC--CC-hHHHHHHHHHHHHCCCEEEeCCC
Confidence 9986 3 4455555432 23 233 3344432 12 22335566677778888887654
No 130
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=53.99 E-value=30 Score=29.02 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=25.7
Q ss_pred CCeEEEEEec---CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYS---MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S---~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+|+..| ..|....=+-...+.|++ .|++++++....
T Consensus 23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~-aG~~V~~~S~~~ 65 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEIREAVLVMLELDR-HNVNFKCFAPNK 65 (242)
T ss_dssp -CEEEEECCCSSTTTSCCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred cCEEEEEEecCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 3799988764 245443334444566666 799999998764
No 131
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=52.76 E-value=10 Score=30.82 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=51.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh--hhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL--VEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l--~~AD~II~G 135 (260)
.|+||+|+.+... ...=+-...+.|+. .|.+++++......+-.+. ..-.. ..+ ...+++ .++|+||+-
T Consensus 8 m~~~v~ill~~g~--~~~e~~~~~~~l~~-ag~~v~~vs~~g~~~v~~~--~G~~v-~~d---~~l~~~~~~~~D~livp 78 (208)
T 3ot1_A 8 MSKRILVPVAHGS--EEMETVIIVDTLVR-AGFQVTMAAVGDKLQVQGS--RGVWL-TAE---QTLEACSAEAFDALALP 78 (208)
T ss_dssp -CCEEEEEECTTC--CHHHHHHHHHHHHH-TTCEEEEEESSSCSEEECT--TSCEE-ECS---EEGGGCCGGGCSEEEEC
T ss_pred cCCeEEEEECCCC--cHHHHHHHHHHHHH-CCCEEEEEEcCCCcceecC--CCcEE-eCC---CCHHHCCCcCCCEEEEC
Confidence 4678988876533 23233334455555 6899999988632110000 00000 001 112333 589999984
Q ss_pred cc---ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 136 FP---TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 136 sP---tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.. .+...-...+..|+.+.. -.||+++.++++
T Consensus 79 GG~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G 113 (208)
T 3ot1_A 79 GGVGGAQAFADSTALLALIDAFS-------QQGKLVAAICAT 113 (208)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred CCchHHHHHhhCHHHHHHHHHHH-------HcCCEEEEEChh
Confidence 32 222223456667776653 257777665543
No 132
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=52.73 E-value=39 Score=28.86 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCCeEEEEEecCch---hHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYG---HVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~G---nT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.++||+||++.... -+-.=++.+.+.|++ .|+++.+++..+
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~~~~ 55 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFDPAE 55 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTT
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 46799999986533 122357888888888 899999998544
No 133
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=52.52 E-value=37 Score=29.23 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=26.2
Q ss_pred CCeEEEEEecC------------chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSM------------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~------------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.+|||||-.+. +|....=+-...+.|+. .|.+++++....
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~-ag~~v~i~S~~g 99 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHA-AGFEFEVATISG 99 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 46999998773 24433333344555666 789999998764
No 134
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=52.43 E-value=18 Score=31.65 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCeEEEEEec--CchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYS--MYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S--~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+|++||+-. ..|...++.+.+.+.|++ .|++++++.-.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~ 64 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATE 64 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEec
Confidence 3468877743 334566788889999988 88888877543
No 135
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=52.41 E-value=14 Score=29.48 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=48.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD~II~G 135 (260)
++||+|+-+-.. ...=+-...+.|+. .|.+++++......+-.+.. .-.. . ++...+++ .++|+||+.
T Consensus 3 ~~~v~ill~~g~--~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~~--g~~v-~---~d~~l~~~~~~~~~D~livp 73 (197)
T 2rk3_A 3 SKRALVILAKGA--EEMETVIPVDVMRR-AGIKVTVAGLAGKDPVQCSR--DVVI-C---PDASLEDAKKEGPYDVVVLP 73 (197)
T ss_dssp CCEEEEEECTTC--CHHHHHHHHHHHHH-TTCEEEEEETTCSSCEECTT--SCEE-C---CSEEHHHHHTTCCCSEEEEC
T ss_pred CCEEEEEECCCC--cHHHHHHHHHHHHH-CCCEEEEEEcCCCCccccCC--CCEE-e---CCcCHHHcCCccCCCEEEEC
Confidence 468888876433 22223334455555 68899998875421100000 0000 0 11124555 789999886
Q ss_pred ccc---cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEE
Q 024934 136 FPT---RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFV 172 (260)
Q Consensus 136 sPt---Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~ 172 (260)
... +...-...+..|+.+.. -+||+++.++
T Consensus 74 GG~~~~~~l~~~~~~~~~l~~~~-------~~gk~i~aiC 106 (197)
T 2rk3_A 74 GGNLGAQNLSESAAVKEILKEQE-------NRKGLIATIC 106 (197)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEET
T ss_pred CCchhHHHhhhCHHHHHHHHHHH-------HcCCEEEEEC
Confidence 532 11112344555665542 2467655444
No 136
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=52.23 E-value=18 Score=31.75 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.+|||++|..+. .|-.+..+..+++.+.+ .|++++++-+..
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 80 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRS-IGIEARWFVIEG 80 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHH-TTCEEEEEECCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 578999998775 46667778888888887 899999887754
No 137
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=51.98 E-value=16 Score=31.72 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=31.3
Q ss_pred cCCCCeEEEEEecC---chhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 56 EITKLKIFIVFYSM---YGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 56 ~~~m~KVlIIy~S~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
...|||||+|.... .|-.+..+..+++.|.+ .|.+|.++.....
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 63 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRD-AGHEVSVLAPASP 63 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHH-TTCEEEEEESCCT
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCc
Confidence 33699999998542 26667778888888888 7999999987654
No 138
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=51.21 E-value=13 Score=32.54 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCeEEEEEec----CchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYS----MYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S----~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.||||+|..+ ..|-.+..+..+++.|.+ .|++|+++-..
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~-~G~~V~v~~~~ 44 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALAS-LGHEVLVFTPS 44 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 6899998855 256677788888899988 89999998743
No 139
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=51.16 E-value=14 Score=29.88 Aligned_cols=102 Identities=7% Similarity=-0.081 Sum_probs=50.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh--hhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL--VEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l--~~AD~II~Gs 136 (260)
|+||+|+-+......+ +-...+.|+. .|.+++++........++.. . .... -.++...+++ .++|+||+..
T Consensus 2 ~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~~-~-~g~~--v~~~~~l~~~~~~~~D~livpG 74 (205)
T 2ab0_A 2 SASALVCLAPGSEETE--AVTTIDLLVR-GGIKVTTASVASDGNLAITC-S-RGVK--LLADAPLVEVADGEYDVIVLPG 74 (205)
T ss_dssp CCEEEEEECTTCCHHH--HHHHHHHHHH-TTCEEEEEECSSTTCCEEEC-T-TSCE--EECSEEHHHHTTSCCSEEEECC
T ss_pred CcEEEEEEcCCCcHHH--HHHHHHHHHH-CCCEEEEEeCCCCCCceeec-C-CCeE--EecCCCHHHCCcccCCEEEECC
Confidence 4689988876443322 2233455555 68899998876421000000 0 0000 0011123444 6799998865
Q ss_pred cc---cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 137 PT---RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 137 Pt---Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.. +...-...+..|+.+.. -.||+++.++++
T Consensus 75 G~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G 108 (205)
T 2ab0_A 75 GIKGAECFRDSTLLVETVKQFH-------RSGRIVAAICAA 108 (205)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETHH
T ss_pred CcccHHHhccCHHHHHHHHHHH-------HcCCEEEEECHh
Confidence 32 21122345556666542 257776665543
No 140
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=50.70 E-value=14 Score=29.26 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=41.8
Q ss_pred CCCeEEEEEecC-----------chhH--HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh
Q 024934 58 TKLKIFIVFYSM-----------YGHV--EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAA 124 (260)
Q Consensus 58 ~m~KVlIIy~S~-----------~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~ 124 (260)
.|+||+|+.+-. ||++ +.+.+.+.+...+ .|++++.+.-... .-+ +..+ .+
T Consensus 6 ~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~~~~~QSN~E---geL-----------Id~I-h~ 69 (153)
T 3lwz_A 6 DKFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQG-MDVALSHLQSNAE---HAL-----------IDSI-HQ 69 (153)
T ss_dssp -CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHH-TTEEEEEEECSCH---HHH-----------HHHH-HH
T ss_pred ccCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH---HHH-----------HHHH-HH
Confidence 367999999763 4542 4566667777776 7999998886431 000 0011 22
Q ss_pred hhhhcCEEEEEccccC
Q 024934 125 DLVEADGFLFGFPTRY 140 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~ 140 (260)
...++|+|||=---|-
T Consensus 70 a~~~~dgiiINpgA~T 85 (153)
T 3lwz_A 70 ARGNTDFILINPAAFT 85 (153)
T ss_dssp HTTTCSEEEEECGGGG
T ss_pred hhhcCceEEEccccce
Confidence 3356899999877775
No 141
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=50.26 E-value=12 Score=33.06 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=29.9
Q ss_pred CCCeEEEEEec--C--------chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYS--M--------YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S--~--------~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|||||+|... + .|-.+..+..+++.|.+ .|++|.++-...
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 69 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAK-QGIEVDIYTRAT 69 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEecCC
Confidence 69999999853 2 24456677778888877 799999887654
No 142
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=50.16 E-value=20 Score=29.92 Aligned_cols=55 Identities=5% Similarity=0.014 Sum_probs=37.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
+..+|+||-.+..+|...+.+.+.. .|+++.++...+. +. + .+.+.++|+|||.-
T Consensus 11 ~~~~~~~i~~~~~~~~~~i~~~l~~-----~G~~v~v~~~~~~---------------~~---~-~~~l~~~Dglil~G 65 (239)
T 1o1y_A 11 HHVRVLAIRHVEIEDLGMMEDIFRE-----KNWSFDYLDTPKG---------------EK---L-ERPLEEYSLVVLLG 65 (239)
T ss_dssp CCCEEEEECSSTTSSCTHHHHHHHH-----TTCEEEEECGGGT---------------CC---C-SSCGGGCSEEEECC
T ss_pred ceeEEEEEECCCCCCchHHHHHHHh-----CCCcEEEeCCcCc---------------cc---c-ccchhcCCEEEECC
Confidence 4678999999988887766665543 4778877665421 11 1 34567899998854
No 143
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=50.10 E-value=8.2 Score=34.00 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=28.8
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
+..+|||+++..+..||...++ .+++.|.+ .|++|.++.-.
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~-~La~~L~~-~GheV~v~~~~ 52 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLV-PLSWALRA-AGHEVLVAASE 52 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEEG
T ss_pred CCCceEEEEEcCCCcchHHHHH-HHHHHHHH-CCCEEEEEcCH
Confidence 3468999998877778866544 46667777 79999887643
No 144
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=50.00 E-value=15 Score=30.02 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEE-EEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLL-YRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~l-i~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
||||.||= .|+ |...++..+.+ .|.++.+ ++................. .... .+.+.++|.||+..|
T Consensus 23 mmkI~IIG---~G~---mG~~la~~l~~-~g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~-~~~~~~aDvVilavp 90 (220)
T 4huj_A 23 MTTYAIIG---AGA---IGSALAERFTA-AQIPAIIANSRGPASLSSVTDRFGASV----KAVE-LKDALQADVVILAVP 90 (220)
T ss_dssp SCCEEEEE---CHH---HHHHHHHHHHH-TTCCEEEECTTCGGGGHHHHHHHTTTE----EECC-HHHHTTSSEEEEESC
T ss_pred CCEEEEEC---CCH---HHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHhCCCc----ccCh-HHHHhcCCEEEEeCC
Confidence 67888874 454 55566666655 5777776 4433221111111111100 0111 456789999999998
Q ss_pred ccCCCchHHHHHHHHHh
Q 024934 138 TRYGCMAAQMKAFFDST 154 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~ 154 (260)
. ..+..++..+
T Consensus 91 ~------~~~~~v~~~l 101 (220)
T 4huj_A 91 Y------DSIADIVTQV 101 (220)
T ss_dssp G------GGHHHHHTTC
T ss_pred h------HHHHHHHHHh
Confidence 3 3455666554
No 145
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=49.47 E-value=88 Score=24.14 Aligned_cols=49 Identities=4% Similarity=0.038 Sum_probs=29.8
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|+..+... ....++++.++++=
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 138 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPVVLVGNK 138 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEEC
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 45678999999987766544445566777665421 12346777776663
No 146
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=49.13 E-value=44 Score=26.26 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=19.5
Q ss_pred EEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 62 IFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 62 VlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+||-+- .+++..+++.+. + .|++++++...
T Consensus 3 i~iid~~-~~~~~~~~~~l~----~-~G~~~~~~~~~ 33 (189)
T 1wl8_A 3 IVIMDNG-GQYVHRIWRTLR----Y-LGVETKIIPNT 33 (189)
T ss_dssp EEEEECS-CTTHHHHHHHHH----H-TTCEEEEEETT
T ss_pred EEEEECC-CchHHHHHHHHH----H-CCCeEEEEECC
Confidence 7776532 345666666654 3 57888888764
No 147
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=48.88 E-value=18 Score=28.82 Aligned_cols=98 Identities=12% Similarity=-0.100 Sum_probs=46.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh--hhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAA--DLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~--~l~~AD~II~Gs 136 (260)
.+|+++|... .|..+.=+-...+.|++ .|++++++....... .....-.. ..| ...+ +..++|+||+-.
T Consensus 7 t~~~v~il~~-~gFe~~E~~~p~~~l~~-ag~~V~~~s~~~~~v---~~~~G~~v-~~d---~~l~~v~~~~yD~liiPG 77 (177)
T 4hcj_A 7 TNNILYVMSG-QNFQDEEYFESKKIFES-AGYKTKVSSTFIGTA---QGKLGGMT-NID---LLFSEVDAVEFDAVVFVG 77 (177)
T ss_dssp CCEEEEECCS-EEECHHHHHHHHHHHHH-TTCEEEEEESSSEEE---EETTSCEE-EEC---EEGGGCCGGGCSEEEECC
T ss_pred CCCEEEEECC-CCccHHHHHHHHHHHHH-CCCEEEEEECCCCeE---eeCCCCEE-ecC---ccHHHCCHhHCCEEEECC
Confidence 3455544432 33222223345566666 799999998754211 10000000 001 1123 346899999842
Q ss_pred c--ccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEE
Q 024934 137 P--TRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFV 172 (260)
Q Consensus 137 P--tY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~ 172 (260)
- .....-...+..|+.+.. -.||+++.++
T Consensus 78 G~g~~~l~~~~~~~~~l~~~~-------~~~k~iaaIC 108 (177)
T 4hcj_A 78 GIGCITLWDDWRTQGLAKLFL-------DNQKIVAGIG 108 (177)
T ss_dssp SGGGGGGTTCHHHHHHHHHHH-------HTTCEEEEET
T ss_pred CccHHHHhhCHHHHHHHHHHH-------HhCCEEEEec
Confidence 1 222223456677776653 1456655443
No 148
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=48.86 E-value=9.7 Score=33.45 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=29.4
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
+..+|||+++.+...|+... +..+++.|.+ .|++|.++--.
T Consensus 17 ~~~~MrIl~~~~~~~Gh~~~-~~~la~~L~~-~GheV~v~~~~ 57 (412)
T 3otg_A 17 EGRHMRVLFASLGTHGHTYP-LLPLATAARA-AGHEVTFATGE 57 (412)
T ss_dssp -CCSCEEEEECCSSHHHHGG-GHHHHHHHHH-TTCEEEEEECG
T ss_pred ccceeEEEEEcCCCcccHHH-HHHHHHHHHH-CCCEEEEEccH
Confidence 55789999988777788654 3345666776 79999888654
No 149
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=48.70 E-value=36 Score=26.68 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=49.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhc-CCCCCCCCCcccccHhhh--hhcCEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDH-MKVPPRDDDIPEISAADL--VEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~-~~~~~~~dd~~~i~~~~l--~~AD~II~ 134 (260)
.++||+|+-+......+ +-...+.|+. .|.+++++........ +... ...... -.++...+++ .++|+||+
T Consensus 8 ~~~~v~il~~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~v~-~~~~~~~~g~~--v~~~~~~~~~~~~~~D~liv 81 (190)
T 2vrn_A 8 TGKKIAILAADGVEEIE--LTSPRAAIEA-AGGTTELISLEPGEIQ-SMKGDIEPQEK--YRVDHVVSEVQVSDYDGLLL 81 (190)
T ss_dssp TTCEEEEECCTTCBHHH--HHHHHHHHHH-TTCEEEEEESSSSEEE-EEETTTEEEEE--EECSEEGGGCCGGGCSEEEE
T ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHH-CCCEEEEEecCCCccc-cccccccCCcE--EeCCCChhhCChhhCCEEEE
Confidence 46899988764332222 2233444555 6888988887542110 0000 000000 0001112333 68999988
Q ss_pred Eccc---cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 135 GFPT---RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 135 GsPt---Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.... +.......+..|+.+.. -.||+++.+++
T Consensus 82 pGG~~~~~~~~~~~~l~~~l~~~~-------~~gk~i~aiC~ 116 (190)
T 2vrn_A 82 PGGTVNPDKLRLEEGAMKFVRDMY-------DAGKPIAAICH 116 (190)
T ss_dssp CCCTHHHHHHTTCHHHHHHHHHHH-------HTTCCEEEC-C
T ss_pred CCCchhHHHHhhCHHHHHHHHHHH-------HcCCEEEEECH
Confidence 6542 11122455666776643 14676655544
No 150
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=48.64 E-value=24 Score=28.06 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=36.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcH---HHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTR---EALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~---~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
||||||+ |-|-.+...+.+.|.+ .|.+|..+.-...... .-.....|.. .+...+ .+.+..+|.||..
T Consensus 4 m~~ilIt-----GatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl--~d~~~~-~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 4 VKKIVLI-----GASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIENEHLKVKKADV--SSLDEV-CEVCKGADAVISA 74 (227)
T ss_dssp CCEEEEE-----TCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCCTTEEEECCCT--TCHHHH-HHHHTTCSEEEEC
T ss_pred CCEEEEE-----cCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhccCceEEEEecC--CCHHHH-HHHhcCCCEEEEe
Confidence 6788774 3334566677777766 6888777654422110 0000011110 111112 3446789999987
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
....
T Consensus 75 a~~~ 78 (227)
T 3dhn_A 75 FNPG 78 (227)
T ss_dssp CCC-
T ss_pred CcCC
Confidence 6554
No 151
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=48.57 E-value=63 Score=28.57 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC------CCCCcccc-c-Hhhhhhc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP------RDDDIPEI-S-AADLVEA 129 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~------~~dd~~~i-~-~~~l~~A 129 (260)
.+|||.||= . |+ |...++..|.+ .|.+|.+++..+.............. ..+.+... + .+.+.++
T Consensus 28 ~~mkI~VIG-a--G~---mG~alA~~La~-~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~a 100 (356)
T 3k96_A 28 FKHPIAILG-A--GS---WGTALALVLAR-KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGV 100 (356)
T ss_dssp CCSCEEEEC-C--SH---HHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTC
T ss_pred cCCeEEEEC-c--cH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcC
Confidence 467888764 3 32 34445555655 68889888764321111111111000 00111100 1 2457899
Q ss_pred CEEEEEccccCCCchHHHHHHHHHhc
Q 024934 130 DGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 130 D~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
|.||+..|.+ .++.+++.+.
T Consensus 101 DvVilaVp~~------~~~~vl~~i~ 120 (356)
T 3k96_A 101 TDILIVVPSF------AFHEVITRMK 120 (356)
T ss_dssp CEEEECCCHH------HHHHHHHHHG
T ss_pred CEEEECCCHH------HHHHHHHHHH
Confidence 9999999985 5677777764
No 152
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=47.49 E-value=79 Score=24.09 Aligned_cols=47 Identities=13% Similarity=-0.083 Sum_probs=28.6
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|+..+... ...++++.++++
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~n 138 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGN 138 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEE
Confidence 34578999999986655433334456666665421 224667766665
No 153
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=46.91 E-value=97 Score=23.89 Aligned_cols=48 Identities=4% Similarity=-0.036 Sum_probs=31.1
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|++.+... ...+.++.++++=
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNK 122 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45578999999988776654445666777766432 1245676666653
No 154
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=46.85 E-value=28 Score=30.42 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=45.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE-ccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG-FPT 138 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G-sPt 138 (260)
.+++||. +|.+...+...++.|++ .|++++++++....|- +...+ .+.+.+++.||+. -..
T Consensus 202 ~dv~iva---~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~-------------d~~~i-~~~~~~~~~vvvvEe~~ 263 (324)
T 1w85_B 202 KDITIIA---YGAMVHESLKAAAELEK-EGISAEVVDLRTVQPL-------------DIETI-IGSVEKTGRAIVVQEAQ 263 (324)
T ss_dssp SSEEEEE---CTTHHHHHHHHHHHHHH-TTCCEEEEECSEEESC-------------CHHHH-HHHHHHHSCEEEEEEEE
T ss_pred CCEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEEeeeecCC-------------CHHHH-HHHHhhCCcEEEEeCCC
Confidence 4566655 45555566666677766 7899999999865331 11112 3445566655444 333
Q ss_pred cCCCchHHHHHHHHH
Q 024934 139 RYGCMAAQMKAFFDS 153 (260)
Q Consensus 139 Y~g~~~~~mK~flD~ 153 (260)
..|++...+..++..
T Consensus 264 ~~Gg~g~~v~~~l~~ 278 (324)
T 1w85_B 264 RQAGIAANVVAEINE 278 (324)
T ss_dssp TTSSSHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHh
Confidence 457777777777654
No 155
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=45.51 E-value=30 Score=30.18 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=33.3
Q ss_pred CCCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.++||+|||+-.. --+-.=+..+.+.|++ .|.++..+++...
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~~ 46 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITKS 46 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CCCEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECCC
Confidence 4789999998543 3345677899999988 8999999998753
No 156
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=45.39 E-value=31 Score=25.95 Aligned_cols=41 Identities=12% Similarity=-0.087 Sum_probs=28.9
Q ss_pred CCCeEEEEEecC-ch-hHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSM-YG-HVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~-~G-nT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.++|++||..|. ++ .....+-.++..+.+ .|.+|.+|-..+
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a-~g~eV~vFf~~d 56 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISAS-MEYETSVFFMIX 56 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEeC
Confidence 578999999885 44 334455666666655 689998887765
No 157
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=45.21 E-value=33 Score=26.99 Aligned_cols=69 Identities=25% Similarity=0.277 Sum_probs=46.1
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEAD 130 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD 130 (260)
...||+||...-+. -|+.|.+-..+.+.+ .|+ ++++++++... ++|.. .+++ ..||
T Consensus 11 ~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~yD 73 (154)
T 1hqk_A 11 EGLRFGIVASRFNHALVDRLVEGAIDCIVR-HGGREEDITLVRVPGSW---------------EIPVA-AGELARKEDID 73 (154)
T ss_dssp TTCCEEEEEECTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEESSGG---------------GHHHH-HHHHHTCTTCC
T ss_pred CCCEEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHH---------------HHHHH-HHHHHhcCCCC
Confidence 45789998877554 477888888888887 675 57899998652 23333 3444 3589
Q ss_pred EEE-EEccccCCCc
Q 024934 131 GFL-FGFPTRYGCM 143 (260)
Q Consensus 131 ~II-~GsPtY~g~~ 143 (260)
+|| +|+.+.....
T Consensus 74 avIalG~VIrG~T~ 87 (154)
T 1hqk_A 74 AVIAIGVLIRGATP 87 (154)
T ss_dssp EEEEEEEEECCSST
T ss_pred EEEEeeeeecCCch
Confidence 985 5665554443
No 158
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=44.60 E-value=33 Score=27.00 Aligned_cols=69 Identities=25% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEAD 130 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD 130 (260)
...||+||...-+. -|+.|.+-..+.|.+ .|+ ++++++++... ++|.. .+++ ..||
T Consensus 11 ~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~yD 73 (154)
T 1rvv_A 11 TGLKIGIVVGRFNDFITSKLLSGAEDALLR-HGVDTNDIDVAWVPGAF---------------EIPFA-AKKMAETKKYD 73 (154)
T ss_dssp TTCCEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEESSGG---------------GHHHH-HHHHHHTSCCS
T ss_pred CCCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHH---------------HHHHH-HHHHHhcCCCC
Confidence 45789998877554 478888888888887 674 57889998652 23333 3444 3589
Q ss_pred EEE-EEccccCCCc
Q 024934 131 GFL-FGFPTRYGCM 143 (260)
Q Consensus 131 ~II-~GsPtY~g~~ 143 (260)
+|| +|+.+..+..
T Consensus 74 avIaLG~VIrG~T~ 87 (154)
T 1rvv_A 74 AIITLGTVIRGATT 87 (154)
T ss_dssp EEEEEEEEECCSSS
T ss_pred EEEEeeeeecCCch
Confidence 985 5665554443
No 159
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=44.26 E-value=55 Score=25.93 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=29.1
Q ss_pred hhhhhcCEEEEEccccCCCchHH-HHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQ-MKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~-mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.-+..+|++||..-+-...-... ++.|++.+... ..+.++.++++
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~n 139 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-----CPSTRVLLIGC 139 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH-----CTTSEEEEEEE
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEE
Confidence 45779999999887665433333 56677766432 34677767665
No 160
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=44.21 E-value=1e+02 Score=23.28 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccC---CCC----------ceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDG---VDG----------VEGLLYRVPETLTREALDHMKVPPRDDDIPEISAA 124 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~---~~G----------~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~ 124 (260)
...||+|+=.+..|-|..+-..+...+.. ..| ..+.++|.... +.+..+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~---------------~~~~~~~~~ 84 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQ---------------ESLRSSWNT 84 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSS---------------GGGTCGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCC---------------HhHHHHHHH
Confidence 46688887777789888665554333211 012 22333333321 111112134
Q ss_pred hhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 125 DLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
-+..+|++||..-.-...-...++.++..+.. .....++++.++++=
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 131 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLA---HEDLRKAGLLIFANK 131 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---ChhhCCCeEEEEEEC
Confidence 57899999998877665444455666655431 112467887777663
No 161
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=43.95 E-value=24 Score=27.13 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=22.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.+||+|+-+...-..+ +-...+.++. .|.+++++....
T Consensus 2 ~~ki~il~~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~ 39 (168)
T 3l18_A 2 SMKVLFLSADGFEDLE--LIYPLHRIKE-EGHEVYVASFQR 39 (168)
T ss_dssp CCEEEEECCTTBCHHH--HHHHHHHHHH-TTCEEEEEESSS
T ss_pred CcEEEEEeCCCccHHH--HHHHHHHHHH-CCCEEEEEECCC
Confidence 4688887765432222 2334445555 688999988754
No 162
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=43.65 E-value=19 Score=28.51 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=45.6
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc--eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcCE
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV--EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEADG 131 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~--ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD~ 131 (260)
...||+||...-+. -|+.|.+-..+.+.+ .|+ ++++++++... ++|.. .+++ ..||+
T Consensus 12 ~~~ri~IV~arfn~~I~~~Ll~ga~~~l~~-~Gv~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~yDa 74 (156)
T 1c2y_A 12 QSFRFAIVVARFNEFVTRRLMEGALDTFKK-YSVNEDIDVVWVPGAY---------------ELGVT-AQALGKSGKYHA 74 (156)
T ss_dssp TTCCEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCSCCEEEEESSHH---------------HHHHH-HHHHHHTTCCSE
T ss_pred CCCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCCceEEEECCcHH---------------HHHHH-HHHHHhcCCCCE
Confidence 45789998877554 478888888888887 775 67888887642 22333 3444 35899
Q ss_pred EE-EEccccCCCc
Q 024934 132 FL-FGFPTRYGCM 143 (260)
Q Consensus 132 II-~GsPtY~g~~ 143 (260)
|| +|+-+..+..
T Consensus 75 vIaLG~VIrG~T~ 87 (156)
T 1c2y_A 75 IVCLGAVVKGDTS 87 (156)
T ss_dssp EEEEEECCCCSST
T ss_pred EEEecccccCCch
Confidence 85 5655544443
No 163
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=43.45 E-value=58 Score=24.88 Aligned_cols=51 Identities=12% Similarity=-0.034 Sum_probs=30.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccc-cCCC---CCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLW-KEGK---LVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~-~~~~---l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|+..+.... .... ..++++.++++=
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK 136 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANK 136 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEEC
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEEC
Confidence 34679999999887776554455566666543110 0001 127787777764
No 164
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=43.44 E-value=1e+02 Score=23.18 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=18.3
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVD 85 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~ 85 (260)
..||+||=.+..|-|..+ +.+.....
T Consensus 14 ~~ki~vvG~~~~GKssL~-~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNL-KWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHH-HHHHhhcc
Confidence 457777766678998876 77766553
No 165
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=42.75 E-value=23 Score=28.81 Aligned_cols=97 Identities=6% Similarity=-0.054 Sum_probs=48.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEEEE-c
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFLFG-F 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II~G-s 136 (260)
|+||+|+-+-..-..+ +-...+.+++..+.+++++..... . .....-... .+ ...+++ .++|+||+- .
T Consensus 3 m~kV~ill~~g~~~~E--~~~~~~~l~~~~~~~v~~vs~~~~-V---~~~~G~~v~-~d---~~l~~~~~~~D~livpGG 72 (206)
T 3f5d_A 3 LKKALFLILDQYADWE--GVYLASALNQREDWSVHTVSLDPI-V---SSIGGFKTS-VD---YIIGLEPANFNLLVMIGG 72 (206)
T ss_dssp CEEEEEECCSSBCTTT--SHHHHHHHHTSTTEEEEEEESSSE-E---EBTTSCEEE-CS---EETTSSCSCCSEEEECCB
T ss_pred ccEEEEEEcCCCcHHH--HHHHHHHHhccCCeEEEEEECCCC-E---EecCCcEEe-cC---cChhhCCcCCCEEEEcCC
Confidence 6788887754332222 112333344413889998887642 1 100000000 01 112233 378999883 3
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
+-... ....+..|+.+.. -+||+++.+.+
T Consensus 73 ~~~~~-~~~~l~~~l~~~~-------~~gk~iaaiC~ 101 (206)
T 3f5d_A 73 DSWSN-DNKKLLHFVKTAF-------QKNIPIAAICG 101 (206)
T ss_dssp SCCCC-CCHHHHHHHHHHH-------HTTCCEEEETH
T ss_pred CChhh-cCHHHHHHHHHHH-------HcCCEEEEECH
Confidence 22222 5677788887753 25787766554
No 166
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=42.62 E-value=19 Score=32.26 Aligned_cols=39 Identities=5% Similarity=-0.142 Sum_probs=25.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|+||+|+.+- |....=+-...+.|++ .|++++++....
T Consensus 11 ~~~kv~ill~d--g~e~~E~~~~~~~l~~-ag~~v~~vs~~~ 49 (396)
T 3uk7_A 11 NSRTVLILCGD--YMEDYEVMVPFQALQA-FGITVHTVCPGK 49 (396)
T ss_dssp CCCEEEEECCT--TEEHHHHHHHHHHHHH-TTCEEEEECTTC
T ss_pred cCCeEEEEeCC--CccHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 46899988753 4333334445566666 789999998753
No 167
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=42.45 E-value=33 Score=32.21 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCeEEEE-EecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIV-FYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlII-y~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.++|+|| |+|.+ +..+++++ ++ .|+.++++...
T Consensus 7 ~~~IlIlD~g~~~--~~~i~r~l----r~-~G~~~~i~p~~ 40 (525)
T 1gpm_A 7 KHRILILDFGSQY--TQLVARRV----RE-LGVYCELWAWD 40 (525)
T ss_dssp SSEEEEEECSCTT--HHHHHHHH----HH-TTCEEEEEESC
T ss_pred CCEEEEEECCCcc--HHHHHHHH----HH-CCCEEEEEECC
Confidence 4679888 55544 55566554 44 58888887653
No 168
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=42.41 E-value=22 Score=28.13 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=43.5
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEAD 130 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD 130 (260)
.+.||+||...-+. -|+.|.+-..+.|.+ .|+ ++++++++... ++|.. .++| ..||
T Consensus 9 ~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~gv~~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~yD 71 (158)
T 1di0_A 9 TSFKIAFIQARWHADIVDEARKSFVAELAA-KTGGSVEVEIFDVPGAY---------------EIPLH-AKTLARTGRYA 71 (158)
T ss_dssp CCEEEEEEEECTTHHHHHHHHHHHHHHHHH-HHTTSEEEEEEEESSGG---------------GHHHH-HHHHHHTSCCS
T ss_pred CCCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHH---------------HHHHH-HHHHHhcCCCC
Confidence 46789998876554 477888888888877 564 47888888652 23333 3444 3589
Q ss_pred EEE-EEccccCC
Q 024934 131 GFL-FGFPTRYG 141 (260)
Q Consensus 131 ~II-~GsPtY~g 141 (260)
+|| +|+.+..+
T Consensus 72 avIaLG~VIrG~ 83 (158)
T 1di0_A 72 AIVGAAFVIDGG 83 (158)
T ss_dssp EEEEEEECCCCS
T ss_pred EEEEeeccccCC
Confidence 885 55554433
No 169
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=42.35 E-value=25 Score=27.83 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=43.9
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccCCCCc---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDGVDGV---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEAD 130 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~~~G~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD 130 (260)
...||+||...-+. -|+.|.+-..+.|.+ .|+ ++++++++... ++|.. .++| ..||
T Consensus 10 ~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~Gv~~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~yD 72 (157)
T 2obx_A 10 ETVRIAVVRARWHADIVDQCVSAFEAEMAD-IGGDRFAVDVFDVPGAY---------------EIPLH-ARTLAETGRYG 72 (157)
T ss_dssp CCEEEEEEEECTTHHHHHHHHHHHHHHHHH-HHTTSEEEEEEEESSGG---------------GHHHH-HHHHHHHTCCS
T ss_pred CCCEEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHH---------------HHHHH-HHHHHhcCCCC
Confidence 45789998876554 477888888888876 564 57888888652 23333 3444 3589
Q ss_pred EEE-EEccccCCC
Q 024934 131 GFL-FGFPTRYGC 142 (260)
Q Consensus 131 ~II-~GsPtY~g~ 142 (260)
+|| +|+.+..+.
T Consensus 73 avIaLG~VIrG~T 85 (157)
T 2obx_A 73 AVLGTAFVVNGGI 85 (157)
T ss_dssp EEEEEEECCCCSS
T ss_pred EEEEeeccccCCC
Confidence 885 555544333
No 170
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=42.06 E-value=45 Score=29.40 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=43.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
.+++||. +|.+...+...++.|++ .|+++.++++....|- +...+ .+.+..++.||+.==-+
T Consensus 217 ~dv~iia---~Gs~~~~a~~Aa~~L~~-~Gi~v~vv~~~~l~P~-------------d~~~i-~~~~~~~~~vv~vEe~~ 278 (341)
T 2ozl_B 217 THITVVS---HSRPVGHCLEAAAVLSK-EGVECEVINMRTIRPM-------------DMETI-EASVMKTNHLVTVEGGW 278 (341)
T ss_dssp SSEEEEE---CSTHHHHHHHHHHHHHT-TTCCEEEEECCEEETC-------------CHHHH-HHHHHHHSCEEEECSSC
T ss_pred CCEEEEE---eCHHHHHHHHHHHHHHh-cCCCeEEEeeeeecCC-------------CHHHH-HHHHhcCCeEEEEecCc
Confidence 4566665 45555566666777777 7999999999865331 00112 34455555554442222
Q ss_pred -CCCchHHHHHHHHH
Q 024934 140 -YGCMAAQMKAFFDS 153 (260)
Q Consensus 140 -~g~~~~~mK~flD~ 153 (260)
.|++-..+..++..
T Consensus 279 ~~Gg~g~~v~~~l~~ 293 (341)
T 2ozl_B 279 PQFGVGAEICARIME 293 (341)
T ss_dssp STTCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHh
Confidence 46666666666554
No 171
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=41.76 E-value=16 Score=31.85 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=37.6
Q ss_pred CCeEEEE-EecCchhHHHHHHHHHHHccCCCCc-eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIV-FYSMYGHVEGLAKRMKKGVDGVDGV-EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlII-y~S~~GnT~~lA~~i~~~l~~~~G~-ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..+|++| +.|.. -+...+.+.+.+++ .|+ +++.+++.+..- .+-+++ .+.|.+||+|+|+-
T Consensus 56 ~~~I~~IptAs~~--~~~~~~~~~~~f~~-lG~~~v~~L~i~~r~~-------------a~~~~~-~~~l~~ad~I~v~G 118 (291)
T 3en0_A 56 DAIIGIIPSASRE--PLLIGERYQTIFSD-MGVKELKVLDIRDRAQ-------------GDDSGY-RLFVEQCTGIFMTG 118 (291)
T ss_dssp GCEEEEECTTCSS--HHHHHHHHHHHHHH-HCCSEEEECCCCSGGG-------------GGCHHH-HHHHHHCSEEEECC
T ss_pred CCeEEEEeCCCCC--hHHHHHHHHHHHHH-cCCCeeEEEEecCccc-------------cCCHHH-HHHHhcCCEEEECC
Confidence 4688877 44543 23455555666766 677 778877754200 011223 56899999999986
No 172
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=41.28 E-value=9.2 Score=22.25 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=7.3
Q ss_pred CCcccCCCCC
Q 024934 5 GGCVPSKKKN 14 (260)
Q Consensus 5 ~~~~~~~~~~ 14 (260)
|||+|+.|--
T Consensus 1 ggClp~n~fC 10 (36)
T 2e2s_A 1 GGCLPHNRFC 10 (36)
T ss_dssp CCSBCTTSCC
T ss_pred CCccCCCCCc
Confidence 7899986643
No 173
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=41.16 E-value=1.8e+02 Score=25.26 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=46.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh--hcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLV--EADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~--~AD~II~G 135 (260)
..+||.|||.+ +...+.+++.+.+.+++ .|+++........ ...|+..+ ..+|. .+|+|++.
T Consensus 163 ~~~~vail~~~-~~~g~~~~~~~~~~~~~-~g~~vv~~~~~~~-------------~~~d~~~~-l~~i~~~~~d~v~~~ 226 (419)
T 3h5l_A 163 PNNKIAIITGP-GIYSVNIANAIRDGAGE-YGYDVSLFETVAI-------------PVSDWGPT-LAKLRADPPAVIVVT 226 (419)
T ss_dssp SSSEEEEEECS-SHHHHHHHHHHHHHGGG-GTCEEEEEEECCS-------------SCSCCHHH-HHHHHHSCCSEEEEC
T ss_pred CCCEEEEEEcC-cchhHHHHHHHHHHHHH-cCCeEEEEecCCC-------------CCccHHHH-HHHHHhcCCCEEEEc
Confidence 34899999854 44456789999999988 7887754432221 01234333 45554 67888775
Q ss_pred ccccCCCchHHHHHHHHHhc
Q 024934 136 FPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~ 155 (260)
+ ..+.....|+..+.
T Consensus 227 ~-----~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 227 H-----FYPQDQALFMNQFM 241 (419)
T ss_dssp C-----CCHHHHHHHHHHHT
T ss_pred c-----ccCchHHHHHHHHH
Confidence 2 11234555666553
No 174
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=40.51 E-value=1.2e+02 Score=24.97 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=33.7
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCC-CCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLV-GKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~-gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
+.+.++|.||+.+|... .++..++.+.. .++ |+ +++.... +. ......+.+.+...|..+++.
T Consensus 51 ~~~~~~D~vi~~v~~~~-----~~~~v~~~l~~-----~l~~~~---~vv~~s~--~~-~~~~~~l~~~~~~~g~~~~~~ 114 (289)
T 2cvz_A 51 ERVAEARVIFTCLPTTR-----EVYEVAEALYP-----YLREGT---YWVDATS--GE-PEASRRLAERLREKGVTYLDA 114 (289)
T ss_dssp GGGGGCSEEEECCSSHH-----HHHHHHHHHTT-----TCCTTE---EEEECSC--CC-HHHHHHHHHHHHTTTEEEEEC
T ss_pred HHHhCCCEEEEeCCChH-----HHHHHHHHHHh-----hCCCCC---EEEECCC--CC-HHHHHHHHHHHHHcCCEEEEe
Confidence 44678999999998653 25555555431 232 33 2332222 11 122345556665556666654
Q ss_pred c
Q 024934 203 G 203 (260)
Q Consensus 203 ~ 203 (260)
+
T Consensus 115 p 115 (289)
T 2cvz_A 115 P 115 (289)
T ss_dssp C
T ss_pred c
Confidence 3
No 175
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=40.27 E-value=1.8e+02 Score=24.97 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCc--eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh-hhhhcCEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV--EGLLYRVPETLTREALDHMKVPPRDDDIPEISAA-DLVEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~--ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~-~l~~AD~II~ 134 (260)
.++||.|| | .|+ |...++..+.+ .|. +|..++................ ...... .+ .+.+||.||+
T Consensus 32 ~~~kI~II-G--~G~---mG~slA~~l~~-~G~~~~V~~~dr~~~~~~~a~~~G~~~---~~~~~~-~~~~~~~aDvVil 100 (314)
T 3ggo_A 32 SMQNVLIV-G--VGF---MGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDLGIID---EGTTSI-AKVEDFSPDFVML 100 (314)
T ss_dssp SCSEEEEE-S--CSH---HHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHTTSCS---EEESCT-TGGGGGCCSEEEE
T ss_pred CCCEEEEE-e--eCH---HHHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHCCCcc---hhcCCH-HHHhhccCCEEEE
Confidence 35788776 3 454 55556666665 677 7877776532111111111100 000111 23 4789999999
Q ss_pred EccccC
Q 024934 135 GFPTRY 140 (260)
Q Consensus 135 GsPtY~ 140 (260)
..|...
T Consensus 101 avp~~~ 106 (314)
T 3ggo_A 101 SSPVRT 106 (314)
T ss_dssp CSCGGG
T ss_pred eCCHHH
Confidence 999863
No 176
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=40.27 E-value=15 Score=32.27 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=29.0
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
+..||||+++.....||...++ .+++.|.+ .|++|.++.-.
T Consensus 17 ~~~m~rIl~~~~~~~GHv~p~l-~La~~L~~-~Gh~V~v~~~~ 57 (415)
T 3rsc_A 17 GRHMAHLLIVNVASHGLILPTL-TVVTELVR-RGHRVSYVTAG 57 (415)
T ss_dssp --CCCEEEEECCSCHHHHGGGH-HHHHHHHH-TTCEEEEEECG
T ss_pred cccCCEEEEEeCCCccccccHH-HHHHHHHH-CCCEEEEEeCH
Confidence 4479999988776688876554 45566666 79999988743
No 177
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=40.24 E-value=1.2e+02 Score=22.99 Aligned_cols=109 Identities=10% Similarity=0.070 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHH--ccCC---CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKG--VDGV---DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGF 132 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~--l~~~---~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~I 132 (260)
...||+|+=.+..|-|..+-..+... ..+. .+.....+.+...... .+.. + ..+.+..+...-+..+|++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-l~Dt---~-G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFT-VFDM---S-GQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEE-EEEE---C-CSTTTGGGGGGGGGGCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEE-EEEC---C-CCHHHHHHHHHHHhcCCEE
Confidence 46688887777789888555544333 1110 1222222222211000 0000 0 0012222223457899999
Q ss_pred EEEccccCCCchHHHHHHHHHhcccccCCCC--CCCcEEEEEee
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTGMLWKEGKL--VGKPAGFFVST 174 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~~l~~~~~l--~gK~~~if~s~ 174 (260)
||..-.-...-...++.++..+.. ...+ .++++.++++=
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~~piilv~nK 135 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLN---HPDIKHRRIPILFFANK 135 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH---STTTTTSCCCEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHh---ChhhccCCCeEEEEEeC
Confidence 998766543323344455554421 1123 57787777764
No 178
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=38.80 E-value=39 Score=28.47 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.||||.||=.| |+ |...++..+.+ .|.++.+++........... ..... ... .+.+.++|.||+..|
T Consensus 10 mmm~I~iIG~t--G~---mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~-~g~~~-----~~~-~~~~~~aDvVi~av~ 76 (286)
T 3c24_A 10 GPKTVAILGAG--GK---MGARITRKIHD-SAHHLAAIEIAPEGRDRLQG-MGIPL-----TDG-DGWIDEADVVVLALP 76 (286)
T ss_dssp CCCEEEEETTT--SH---HHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH-TTCCC-----CCS-SGGGGTCSEEEECSC
T ss_pred cCCEEEEECCC--CH---HHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh-cCCCc-----CCH-HHHhcCCCEEEEcCC
Confidence 35788776321 43 55555555655 67888777654221111111 11110 112 345679999999999
Q ss_pred ccCCCchHHHHHHHHHh
Q 024934 138 TRYGCMAAQMKAFFDST 154 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~ 154 (260)
... ++.+++.+
T Consensus 77 ~~~------~~~v~~~l 87 (286)
T 3c24_A 77 DNI------IEKVAEDI 87 (286)
T ss_dssp HHH------HHHHHHHH
T ss_pred chH------HHHHHHHH
Confidence 764 45556555
No 179
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=38.76 E-value=46 Score=27.16 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=57.8
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcC-CCC-cHH---Hhhc-CCCCCCCCCcccccHhhhhhcC
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVP-ETL-TRE---ALDH-MKVPPRDDDIPEISAADLVEAD 130 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~-~~~-~~~---~~~~-~~~~~~~dd~~~i~~~~l~~AD 130 (260)
.|.++.+||++| .|.|..+.+++.....+ +..+.++.-. +.. ... -++. ..|. ......++ .+...++|
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~-~~~~~~d~-~~~~~~~D 93 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYSSSFCTHDRNTMEAL-PACLLRDV-AQEALGVA 93 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEETTCCCGGGSCCHHHHHHSEEE-EESSGGGG-HHHHHTCS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccccCccchhhhhhccCCcccce-ecCCHHHH-HHhccCCC
Confidence 588999999998 69998899998887654 6778777633 111 000 0000 0000 01222333 44566788
Q ss_pred EEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 131 GFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.|++==--++ .. +-.|+..+. -.||++.+++-
T Consensus 94 vIlIDEaQFf---k~-~ve~~~~L~-------~~gk~VI~~GL 125 (195)
T 1w4r_A 94 VIGIDEGQFF---PD-IVEFCEAMA-------NAGKTVIVAAL 125 (195)
T ss_dssp EEEESSGGGC---TT-HHHHHHHHH-------HTTCEEEEEEE
T ss_pred EEEEEchhhh---HH-HHHHHHHHH-------HCCCeEEEEec
Confidence 8887655555 22 455666553 25787655554
No 180
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=38.65 E-value=19 Score=30.66 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=32.7
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccc
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPT 138 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPt 138 (260)
=|+.|.+.|+. .+++|+.+...+.. ..+|. +.++|.++|+|||.-.-
T Consensus 34 g~~~~~~aL~~-~~~~V~~i~~~~~~--------------~~fP~-~~~~L~~yDvIIl~d~~ 80 (248)
T 3soz_A 34 GADYLLSCLRQ-GNIDVDYMPAHIVQ--------------TRFPQ-TAEALACYDAIVISDIG 80 (248)
T ss_dssp CSHHHHHHHTT-TTCEEEEEETTHHH--------------HSCCC-SHHHHHTCSEEEEESCC
T ss_pred hHHHHHHHHhc-CCceeEEeCchhhh--------------hhCCC-ChHHHhcCCEEEEcCCC
Confidence 45667778888 89999988875321 01222 36889999999998443
No 181
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=38.54 E-value=72 Score=24.57 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=29.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|+..+... ...++++.++++=
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNK 122 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEEC
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 4467899999987765544334556666665421 2356777776664
No 182
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=38.52 E-value=35 Score=29.72 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=21.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+|+=++..| ..+...+++ .|+++.+++-..
T Consensus 1 MK~I~ilGgg~~g------~~~~~~Ak~-~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKLQG------FEAAYLSKK-AGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSHHH------HHHHHHHHH-TTCEEEEEESCT
T ss_pred CCEEEEECCCHHH------HHHHHHHHH-CCCEEEEEeCCC
Confidence 7888887544333 233334555 799999987644
No 183
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=37.92 E-value=39 Score=29.36 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=42.1
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
.+++||. +|.+-..+...++.|++ .|++++++++....|- |...+ .+.+.+++.||+.=--+
T Consensus 203 ~dv~iva---~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~-------------d~~~i-~~~~~~~~~vv~vEe~~ 264 (324)
T 1umd_B 203 KDLTLIC---YGTVMPEVLQAAAELAK-AGVSAEVLDLRTLMPW-------------DYEAV-MNSVAKTGRVVLVSDAP 264 (324)
T ss_dssp SSEEEEE---CGGGHHHHHHHHHHHHH-TTCCEEEEECCEEETC-------------CHHHH-HHHHHHHSCEEEEEEEE
T ss_pred CCEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEEeceecCC-------------CHHHH-HHHHhcCCeEEEEecCC
Confidence 4565554 34444455555666666 7899999999865331 11112 34455566555443222
Q ss_pred -CCCchHHHHHHHHH
Q 024934 140 -YGCMAAQMKAFFDS 153 (260)
Q Consensus 140 -~g~~~~~mK~flD~ 153 (260)
.|++-..+..++..
T Consensus 265 ~~gG~g~~v~~~l~~ 279 (324)
T 1umd_B 265 RHASFVSEVAATIAE 279 (324)
T ss_dssp STTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 56666666666544
No 184
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=37.87 E-value=44 Score=28.42 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=27.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|||+++..+..|+ ...+..+++.|.+ .|++|.++-..+
T Consensus 7 mkIl~~~~~~gG~-~~~~~~la~~L~~-~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAGGTGGH-VFPGLAVAHHLMA-QGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECCSSHHH-HHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred cEEEEEeCCCccc-hhHHHHHHHHHHH-cCCEEEEEecCC
Confidence 8999987554455 4456677778877 799999987654
No 185
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=37.38 E-value=20 Score=26.11 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=35.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCC-C--CCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVP-P--RDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~-~--~~dd~~~i~~~~l~~AD~II~G 135 (260)
.|||+|+ |. |+ +...+++.|.+ .|.++.+++................ . +..+...+....+.++|.||+.
T Consensus 4 ~m~i~Ii-G~--G~---iG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 4 GMYIIIA-GI--GR---VGYTLAKSLSE-KGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp -CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCEEEEE-CC--CH---HHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 4688877 43 43 23334444444 5788888876432111111111110 0 0011111111236789999999
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
+|..
T Consensus 77 ~~~~ 80 (140)
T 1lss_A 77 TGKE 80 (140)
T ss_dssp CSCH
T ss_pred eCCc
Confidence 9864
No 186
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=37.14 E-value=1.6e+02 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=25.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGL 93 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~ 93 (260)
..+||.+|| +.+...+..++.+.+.+++ .|.++.
T Consensus 138 g~~~ia~i~-~~~~~g~~~~~~~~~~l~~-~g~~v~ 171 (368)
T 4eyg_A 138 GIKKVATLT-SDYAPGNDALAFFKERFTA-GGGEIV 171 (368)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred CCCEEEEEe-cCchHhHHHHHHHHHHHHH-cCCEEE
Confidence 468999998 4455556678888888888 787664
No 187
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=37.12 E-value=55 Score=25.14 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHH
Q 024934 73 VEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 73 T~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
++.+++.|.+.+.+..+.++.++++.+. -.-+|.+||+|..- ..++++..|
T Consensus 19 ~~~l~~~i~~al~dkKa~DI~vlDv~~~-------------------------s~~~DyfVIatg~S----~rqv~Aiad 69 (136)
T 3ups_A 19 PEMLLKLVTDSLDDDQALEIATIPLAGK-------------------------SSIADYMVIASGRS----SRQVTAMAQ 69 (136)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECTTT-------------------------CSSCSEEEEEECSS----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCC-------------------------CcccCEEEEEEcCC----HHHHHHHHH
Confidence 6789999999998767889999999863 12469999998653 455565555
Q ss_pred Hhc
Q 024934 153 STG 155 (260)
Q Consensus 153 ~~~ 155 (260)
.+.
T Consensus 70 ~v~ 72 (136)
T 3ups_A 70 KLA 72 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 188
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=37.00 E-value=32 Score=24.57 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCeEEEEEec-Cchh-HHHHHHHHHHHccCCC-Cc-eEEEEEcCC
Q 024934 59 KLKIFIVFYS-MYGH-VEGLAKRMKKGVDGVD-GV-EGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S-~~Gn-T~~lA~~i~~~l~~~~-G~-ev~li~l~~ 99 (260)
|+|++||..| +++. ....+-.++..+.+ . |. ++.++-..+
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~-~~g~~~v~vff~~d 44 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALRE-QESNLDLRLFLMSD 44 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHH-HCTTCEEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-cCCCccEEEEEEch
Confidence 6789888866 4542 22334444444444 4 77 887777654
No 189
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=36.84 E-value=1.7e+02 Score=23.87 Aligned_cols=38 Identities=5% Similarity=-0.021 Sum_probs=27.6
Q ss_pred CCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.++|.+|..+. +.....+.+.+.+.+++ .|.++.++..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~ 42 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQA-LNVTVEYRGA 42 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHH-HTCEEEEEEC
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHH-cCCEEEEeCC
Confidence 56787777554 45567788999999988 8988877543
No 190
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=36.67 E-value=19 Score=26.62 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=21.4
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|++|+|+=+ |. +...+++.|.+ .|.++.+++..+
T Consensus 6 ~~~v~I~G~---G~---iG~~la~~L~~-~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGS---EA---AGVGLVRELTA-AGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECC---SH---HHHHHHHHHHH-TTCCEEEEESCH
T ss_pred CCEEEEECC---CH---HHHHHHHHHHH-CCCeEEEEECCH
Confidence 667777643 43 44445555555 688899988653
No 191
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=36.53 E-value=89 Score=27.36 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=47.3
Q ss_pred cCCCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcH----HHhhcCCCCCCCCCcccccHhhhhhcC
Q 024934 56 EITKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTR----EALDHMKVPPRDDDIPEISAADLVEAD 130 (260)
Q Consensus 56 ~~~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~----~~~~~~~~~~~~dd~~~i~~~~l~~AD 130 (260)
+.+.+||+|+.--+ .+.|+..-..+..... ..++++++++.+..++ +-+.... .+++++ +..++|
T Consensus 44 dirplkI~ILnlmp~k~~te~qf~rlL~~~~--~qv~v~~~~~~~~~~~~~~~~hl~~~y-----~~f~~~---~~~~~D 113 (312)
T 2h2w_A 44 DIRPLEILILNLMPDKIKTEIQLLRLLGNTP--LQVNVTLLYTETHKPKHTPIEHILKFY-----TTFSAV---KDRKFD 113 (312)
T ss_dssp -CCCEEEEEECCCSSHHHHHHHHHHHHHSSS--SCEEEEEECCSCCCCCSSCHHHHHHHC-----BCGGGT---TTCCEE
T ss_pred CCCCceEEEEeCCCCcCchHHHHHHHhcCCC--CcEEEEEEEccCCCCCCccHHHHhhcc-----CCcccc---cccCcC
Confidence 44678999999765 4777755444443321 3577888888654211 0000000 011111 346789
Q ss_pred EEE-EEccccCCC---c--hHHHHHHHHHh
Q 024934 131 GFL-FGFPTRYGC---M--AAQMKAFFDST 154 (260)
Q Consensus 131 ~II-~GsPtY~g~---~--~~~mK~flD~~ 154 (260)
++| .|+|+-... + =..++.+++..
T Consensus 114 glIITGsP~~~~~~ed~~yw~el~~li~~~ 143 (312)
T 2h2w_A 114 GFIITGAPVELLPFEEVDYWEELTEIMEWS 143 (312)
T ss_dssp EEEECCCSCTTSCGGGSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCccCchHHHHHHHHHHH
Confidence 885 588863222 1 14566777765
No 192
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=36.52 E-value=31 Score=27.70 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=42.9
Q ss_pred CeEEEEEecC-----------chh--HHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh
Q 024934 60 LKIFIVFYSM-----------YGH--VEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL 126 (260)
Q Consensus 60 ~KVlIIy~S~-----------~Gn--T~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l 126 (260)
|||+||.+-. ||+ -+.+.+.+.+...+ .|++++.+.-... .-+ +..+ .+..
T Consensus 29 M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~-~G~~l~~~QSN~E---GeL-----------Id~I-h~A~ 92 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAE-LGLKAVVRQSDSE---AQL-----------LDWI-HQAA 92 (172)
T ss_dssp CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHH-TTCEEEEEECSCH---HHH-----------HHHH-HHHH
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH---HHH-----------HHHH-HHhh
Confidence 6899999763 454 24566677777777 7999998886431 000 0111 2334
Q ss_pred hhcCEEEEEccccC-CCc
Q 024934 127 VEADGFLFGFPTRY-GCM 143 (260)
Q Consensus 127 ~~AD~II~GsPtY~-g~~ 143 (260)
.++|+|||=---|- .++
T Consensus 93 ~~~dgIIINPgAyTHtSv 110 (172)
T 3n8k_A 93 DAAEPVILNAGGLTHTSV 110 (172)
T ss_dssp HHTCCEEEECGGGGGTCH
T ss_pred hcCcEEEECcchhhhhhH
Confidence 56899999877775 443
No 193
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=36.27 E-value=24 Score=30.16 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=28.4
Q ss_pred CeEEEEEec--CchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYS--MYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S--~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|||++|..+ +.|-.+..+..+++.|.+ .|++|.++...
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 40 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAA-RGHHVRVYTQS 40 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHH-TTCCEEEEESE
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHh-CCCeEEEEecC
Confidence 689888644 456667777788888888 79999998765
No 194
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=35.93 E-value=34 Score=30.64 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=30.7
Q ss_pred CeEEEEEec--C---chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYS--M---YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S--~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
||||+|..+ + .|-.+..+..++++|.+ .|++|+++-..
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEA-HGVRTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHT-TTCEEEEEEEC
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 689988753 2 46678888899999988 89999998764
No 195
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=35.73 E-value=88 Score=24.57 Aligned_cols=45 Identities=9% Similarity=-0.032 Sum_probs=25.7
Q ss_pred hhhhhcCEEEEEccccCCCchHHH-HHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQM-KAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~m-K~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.-+..+|++||..-.-...-...+ +.|++.+.. ...+.++.++++
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~n 140 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-----FCPNTKMLLVGC 140 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HCTTCEEEEEEE
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----HCCCCCEEEEEe
Confidence 346789999998765443222233 455554432 234677766665
No 196
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=35.21 E-value=31 Score=29.80 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=28.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.|+||+++.....||...+. .+++.|.+ .|++|.++.-
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 40 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSL-GLVSELAR-RGHRITYVTT 40 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCCEEEEEeCCCCcccccHH-HHHHHHHh-CCCEEEEEcC
Confidence 37799987766678876654 46666777 7999988764
No 197
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=34.95 E-value=56 Score=22.38 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=22.3
Q ss_pred CCeEEEEEecCchhHH-----HHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVE-----GLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~-----~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|.+|.|...|.-+..+ .-|+.+.+. .|++.+.+++..
T Consensus 1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~----~~i~~~~~di~~ 42 (93)
T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTRILDG----KRIQYQLVDISQ 42 (93)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHH----TTCCCEEEETTS
T ss_pred CCCEEEEEcCCCCCchhhHHHHHHHHHHHH----CCCceEEEECCC
Confidence 5566554444445563 455555544 578888888864
No 198
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=34.81 E-value=1.5e+02 Score=24.57 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=33.4
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHH---HhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEE
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFD---STGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLF 199 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD---~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~v 199 (260)
+.+.++|.||+.+|.. ..++..+. .+.. .+ .|+. +++... +. ......+.+.+...+..+
T Consensus 56 ~~~~~~D~vi~~vp~~-----~~~~~v~~~~~~l~~-----~l~~~~~---vv~~~~--~~-~~~~~~l~~~~~~~g~~~ 119 (301)
T 3cky_A 56 KVAAASDIIFTSLPNA-----GIVETVMNGPGGVLS-----ACKAGTV---IVDMSS--VS-PSSTLKMAKVAAEKGIDY 119 (301)
T ss_dssp HHHHHCSEEEECCSSH-----HHHHHHHHSTTCHHH-----HSCTTCE---EEECCC--CC-HHHHHHHHHHHHHTTCEE
T ss_pred HHHhCCCEEEEECCCH-----HHHHHHHcCcchHhh-----cCCCCCE---EEECCC--CC-HHHHHHHHHHHHHcCCeE
Confidence 4467899999999853 23555553 2211 12 3443 233221 22 123355666666667777
Q ss_pred ecCc
Q 024934 200 VPIG 203 (260)
Q Consensus 200 V~~~ 203 (260)
+..+
T Consensus 120 ~~~p 123 (301)
T 3cky_A 120 VDAP 123 (301)
T ss_dssp EECC
T ss_pred EEcc
Confidence 6543
No 199
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=34.61 E-value=1.7e+02 Score=23.22 Aligned_cols=88 Identities=6% Similarity=0.044 Sum_probs=42.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCC-ceEEEEEcCCCCcHHH----hhcCCCCCCCCCcccccHhhhhhcCEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDG-VEGLLYRVPETLTREA----LDHMKVPPRDDDIPEISAADLVEADGF 132 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G-~ev~li~l~~~~~~~~----~~~~~~~~~~dd~~~i~~~~l~~AD~I 132 (260)
.|||.++|.+. |-.+-.++++.|.+ .| .+|.++.-........ .....+. -.+...+ .+.+..+|.|
T Consensus 21 ~~mk~vlVtGa----tG~iG~~l~~~L~~-~G~~~V~~~~R~~~~~~~~~~~~~~~~~~D--l~d~~~~-~~~~~~~D~v 92 (236)
T 3qvo_A 21 GHMKNVLILGA----GGQIARHVINQLAD-KQTIKQTLFARQPAKIHKPYPTNSQIIMGD--VLNHAAL-KQAMQGQDIV 92 (236)
T ss_dssp -CCEEEEEETT----TSHHHHHHHHHHTT-CTTEEEEEEESSGGGSCSSCCTTEEEEECC--TTCHHHH-HHHHTTCSEE
T ss_pred CcccEEEEEeC----CcHHHHHHHHHHHh-CCCceEEEEEcChhhhcccccCCcEEEEec--CCCHHHH-HHHhcCCCEE
Confidence 34555555543 33466677777777 77 7887776442110000 0000010 0111112 2346788999
Q ss_pred EEEccccCCCchHHHHHHHHHhc
Q 024934 133 LFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 133 I~GsPtY~g~~~~~mK~flD~~~ 155 (260)
|...... ...-..+++++.+.
T Consensus 93 v~~a~~~--~~~~~~~~~~~~~~ 113 (236)
T 3qvo_A 93 YANLTGE--DLDIQANSVIAAMK 113 (236)
T ss_dssp EEECCST--THHHHHHHHHHHHH
T ss_pred EEcCCCC--chhHHHHHHHHHHH
Confidence 8765432 22334567777653
No 200
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=34.61 E-value=92 Score=23.91 Aligned_cols=51 Identities=12% Similarity=-0.054 Sum_probs=28.7
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...+..|+..+..........++++.++++=
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 456789999998765543333344555555432111112346777777664
No 201
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=34.53 E-value=76 Score=25.36 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=29.0
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..+||+||-+ .||-..+.+.+. + .|+++.+++. .+++.++|+|||.-
T Consensus 19 ~~~~I~ii~~--~~~~~~~~~~l~----~-~g~~~~~~~~-------------------------~~~l~~~d~iil~G 65 (208)
T 2iss_D 19 SHMKIGVLGV--QGDVREHVEALH----K-LGVETLIVKL-------------------------PEQLDMVDGLILPG 65 (208)
T ss_dssp -CCEEEEECS--SSCHHHHHHHHH----H-TTCEEEEECS-------------------------GGGGGGCSEEEECS
T ss_pred CCcEEEEEEC--CCchHHHHHHHH----H-CCCEEEEeCC-------------------------hHHHhhCCEEEECC
Confidence 4678999965 355555555543 3 4777766542 12356899999943
No 202
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=34.36 E-value=39 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=28.8
Q ss_pred CCeEEEEEecCch-h--HHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYG-H--VEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~G-n--T~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
++||+|+++.... + +...++.+.+.+++ .|+++..++..+.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~~~~~~ 45 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKEV 45 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTS
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEEecCch
Confidence 4789999875432 1 12256778888888 8999999987643
No 203
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=34.07 E-value=38 Score=27.96 Aligned_cols=87 Identities=11% Similarity=-0.088 Sum_probs=42.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc-
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP- 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP- 137 (260)
++||+|+-+-.. +..=+-...+.|+...+.+++++....... . +...-.-.++...+++.++|.||+-.-
T Consensus 5 ~~~V~ill~~gf--~~~e~~~p~evl~~~~~~~v~~vs~~~~~V---~----~~~G~~v~~d~~l~~~~~~D~livpGG~ 75 (231)
T 3noq_A 5 AVQIGFLLFPEV--QQLDLTGPHDVLASLPDVQVHLIWKEPGPV---V----ASSGLVLQATTSFADCPPLDVICIPGGT 75 (231)
T ss_dssp CEEEEEECCTTC--CHHHHHHHHHHHTTSTTEEEEEEESSSEEE---E----CTTSCEEEECEETTTCCCCSEEEECCST
T ss_pred cEEEEEEEeCCC--cHHHHHHHHHHHHcCCCCEEEEEECCCCcE---E----cCCCCEEecccChhHCCcCCEEEECCCC
Confidence 468887775533 222223344555443578888888753211 0 000000001111344567999988542
Q ss_pred -ccCCCchHHHHHHHHHh
Q 024934 138 -TRYGCMAAQMKAFFDST 154 (260)
Q Consensus 138 -tY~g~~~~~mK~flD~~ 154 (260)
.....-...+..|+.+.
T Consensus 76 g~~~~~~~~~l~~~lr~~ 93 (231)
T 3noq_A 76 GVGALMEDPQALAFIRQQ 93 (231)
T ss_dssp THHHHTTCHHHHHHHHHH
T ss_pred ChhhhccCHHHHHHHHHH
Confidence 11122345677777765
No 204
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=34.05 E-value=36 Score=30.75 Aligned_cols=40 Identities=10% Similarity=-0.032 Sum_probs=31.0
Q ss_pred CCeEEEEEec--------------CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYS--------------MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S--------------~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+|||++|..+ ..|-.+..+..+++.|.+ .|++|+++-...
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 60 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAE-MGVQVDIITRRI 60 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHh-cCCeEEEEeCCC
Confidence 5899999853 146567788888888988 799999987643
No 205
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=33.89 E-value=84 Score=25.04 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCC-CCCCCCc-ccccHhhhhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKV-PPRDDDI-PEISAADLVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~-~~~~dd~-~~i~~~~l~~AD~II~G 135 (260)
..|||||. |. |-.+-.++++.|.+ .|.+|.++.-........... .+ ....-|+ ..+ .+.+...|.||..
T Consensus 20 ~~~~ilVt-Ga----tG~iG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~-~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVV-GA----NGKVARYLLSELKN-KGHEPVAMVRNEEQGPELRER-GASDIVVANLEEDF-SHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEE-TT----TSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHT-TCSEEEECCTTSCC-GGGGTTCSEEEEC
T ss_pred CCCeEEEE-CC----CChHHHHHHHHHHh-CCCeEEEEECChHHHHHHHhC-CCceEEEcccHHHH-HHHHcCCCEEEEC
Confidence 45666653 33 23344555555555 688888776543222111110 11 1000111 223 4567789999987
Q ss_pred ccccC
Q 024934 136 FPTRY 140 (260)
Q Consensus 136 sPtY~ 140 (260)
.....
T Consensus 92 ag~~~ 96 (236)
T 3e8x_A 92 AGSGP 96 (236)
T ss_dssp CCCCT
T ss_pred CCCCC
Confidence 77543
No 206
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=33.61 E-value=55 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=18.9
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCC-----ceEEEEE
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDG-----VEGLLYR 96 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G-----~ev~li~ 96 (260)
|||+||-+ ..||...+++++.+ .| +++++++
T Consensus 1 m~I~iid~-~~g~~~s~~~~l~~-----~G~~~~~~~~~~~~ 36 (201)
T 1gpw_B 1 MRIGIISV-GPGNIMNLYRGVKR-----ASENFEDVSIELVE 36 (201)
T ss_dssp CEEEEECC-SSSCCHHHHHHHHH-----HSTTBSSCEEEEEC
T ss_pred CEEEEEec-CCchHHHHHHHHHH-----cCCCCCceEEEEEC
Confidence 58888853 34566666665543 24 6777655
No 207
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=33.59 E-value=30 Score=27.40 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred CCCeEEEEEecC-----------chh--HHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHh
Q 024934 58 TKLKIFIVFYSM-----------YGH--VEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAA 124 (260)
Q Consensus 58 ~m~KVlIIy~S~-----------~Gn--T~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~ 124 (260)
..|||+||.+-. ||+ -+.+.+.+.+...+ .|++++.+.-... .-+ +..+ .+
T Consensus 5 ~~m~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~E---GeL-----------Id~I-h~ 68 (156)
T 1gtz_A 5 ANAPIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAA-HGGTVDFRQSNHE---GEL-----------VDWI-HE 68 (156)
T ss_dssp TTSCEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHT-TTCCEEEEECSCH---HHH-----------HHHH-HH
T ss_pred cCceEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCCH---HHH-----------HHHH-HH
Confidence 466799999762 454 25577777777777 8999998886431 000 0111 23
Q ss_pred hhhhcCEEEEEccccC
Q 024934 125 DLVEADGFLFGFPTRY 140 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~ 140 (260)
...++|+|||=---|-
T Consensus 69 a~~~~dgiIINpgA~T 84 (156)
T 1gtz_A 69 ARLNHCGIVINPAAYS 84 (156)
T ss_dssp HHHHCSEEEEECTTHH
T ss_pred hhhcCcEEEECchhhc
Confidence 3456899998766663
No 208
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=33.09 E-value=33 Score=30.73 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=30.4
Q ss_pred CeEEEEEec--C---chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYS--M---YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S--~---~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
||||+|..+ + .|-.+..+..++++|.+ .|++|+++-..
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIA-DGVDARVLLPA 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 689988754 2 46678888889999988 89999998754
No 209
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=32.91 E-value=33 Score=28.88 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=17.0
Q ss_pred hhhcCEEEEEccccCCCchHHHHHHHHHhc
Q 024934 126 LVEADGFLFGFPTRYGCMAAQMKAFFDSTG 155 (260)
Q Consensus 126 l~~AD~II~GsPtY~g~~~~~mK~flD~~~ 155 (260)
+.++|.||+..|.+. +...++.+.
T Consensus 72 ~~~~d~vi~~v~~~~------~~~v~~~l~ 95 (316)
T 2ew2_A 72 NEQVDLIIALTKAQQ------LDAMFKAIQ 95 (316)
T ss_dssp SCCCSEEEECSCHHH------HHHHHHHHG
T ss_pred CCCCCEEEEEecccc------HHHHHHHHH
Confidence 348999999999763 455566553
No 210
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=32.90 E-value=60 Score=24.73 Aligned_cols=41 Identities=20% Similarity=0.057 Sum_probs=26.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|+|++||..|..-..-..+=.++..+.+ .|.+|++|-..+
T Consensus 6 m~~kl~II~~sg~~d~~~~a~~lA~~Aaa-~g~eV~iF~t~~ 46 (144)
T 2qs7_A 6 KKKKLSIIVFSGTIDKLMPVGILTSGAAA-SGYEVNLFFTFW 46 (144)
T ss_dssp -CCEEEEEECCCSHHHHHHHHHHHHHHHH-TTCEEEEEECHH
T ss_pred ccCCEEEEEEcCCHHHHHHHHHHHHHHHH-cCCcEEEEEehH
Confidence 36699999988753333344445555555 689999887643
No 211
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=32.87 E-value=1e+02 Score=20.03 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=27.6
Q ss_pred EEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 63 FIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 63 lIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+++|++. =+..+.+...+.+-+++ .+++++++++..
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~v~~ 40 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDP-SKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCT-TTEEEEEEETTT
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHh-cCCeEEEEEecC
Confidence 3445555 48899998888888877 788999999864
No 212
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=32.57 E-value=95 Score=26.41 Aligned_cols=118 Identities=9% Similarity=0.062 Sum_probs=61.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++||.|| + .|+ |...++..|.+ .|.+|.+++............. .. ..... .+-+.++|.||+..|
T Consensus 8 ~~~~IgiI-G--~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~----~~~~~-~e~~~~aDvVi~~vp 74 (306)
T 3l6d_A 8 FEFDVSVI-G--LGA---MGTIMAQVLLK-QGKRVAIWNRSPGKAAALVAAG-AH----LCESV-KAALSASPATIFVLL 74 (306)
T ss_dssp CSCSEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHT-CE----ECSSH-HHHHHHSSEEEECCS
T ss_pred CCCeEEEE-C--CCH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHCC-Ce----ecCCH-HHHHhcCCEEEEEeC
Confidence 46788887 3 343 44455555555 6888888876532111111110 00 00111 344678999999998
Q ss_pred ccCCCchHHHHHHHH--HhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 138 TRYGCMAAQMKAFFD--STGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 138 tY~g~~~~~mK~flD--~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
.. ..++..+. .+.. ..+|+.+ +..++.... +...+...+...|..+++.+.
T Consensus 75 ~~-----~~~~~v~~~~~l~~-----~~~g~iv---id~st~~~~---~~~~l~~~~~~~g~~~vdapv 127 (306)
T 3l6d_A 75 DN-----HATHEVLGMPGVAR-----ALAHRTI---VDYTTNAQD---EGLALQGLVNQAGGHYVKGMI 127 (306)
T ss_dssp SH-----HHHHHHHTSTTHHH-----HTTTCEE---EECCCCCTT---HHHHHHHHHHHTTCEEEEEEE
T ss_pred CH-----HHHHHHhcccchhh-----ccCCCEE---EECCCCCHH---HHHHHHHHHHHcCCeEEeccc
Confidence 53 34555553 2211 1245543 332221222 235566667778888887544
No 213
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=32.32 E-value=48 Score=24.30 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=23.4
Q ss_pred CCeEEEEE-ecCchhH--HHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVF-YSMYGHV--EGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy-~S~~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+|++++. .|+||+. +.-.+. +..+.. .+.++.++-..+
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~-a~a~~a-~~~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDA-LLATSA-LTDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHH-HHHHHT-TCSCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHH-HHHHHh-CCCCEEEEEehH
Confidence 67888766 5578764 333333 333333 456888777765
No 214
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=31.98 E-value=38 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=26.8
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..|.| |++.......+.+.|..|+++ +|+..++.....
T Consensus 6 PaI~i-~~~~~~~~~~~l~~vl~GIEE-EGip~~v~~~~~ 43 (117)
T 1nbw_B 6 PGVRL-FYDPRGHHAGAINELCWGLEE-QGVPCQTITYDG 43 (117)
T ss_dssp CCEEE-EECTTSCCHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred CEEEE-EeCCCCCCHHHHHHHHhhhhh-cCCCeEEEEeCC
Confidence 34555 444433334577999999999 999999877654
No 215
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=31.94 E-value=60 Score=28.98 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=32.2
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
++||+|+|+-.. .-+-.=+..|.+.|++ .|.++..+++...
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~ 80 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQA 80 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CCeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecCC
Confidence 458999998653 3345677899999988 8999999998753
No 216
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=31.94 E-value=70 Score=27.61 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCeEEEEEecCch-h--HHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYG-H--VEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~G-n--T~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++||+||++.... + +-.-+..+.+.|++ .|.++..+++..
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITK 45 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcC
Confidence 5689999976432 1 22346778889998 899999998754
No 217
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=31.92 E-value=88 Score=29.95 Aligned_cols=76 Identities=8% Similarity=-0.112 Sum_probs=49.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhc-CEEEEEcc-
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEA-DGFLFGFP- 137 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~A-D~II~GsP- 137 (260)
.+|+||- +|..-..|...++.|++ .|++++++++....|. |...+ .+.+.++ ..||+.=-
T Consensus 499 ~dv~iva---~G~~v~~al~Aa~~L~~-~Gi~v~Vidlr~l~Pl-------------D~e~i-~~~~~~~~~~vvvvEe~ 560 (616)
T 3mos_A 499 DQVTVIG---AGVTLHEALAAAELLKK-EKINIRVLDPFTIKPL-------------DRKLI-LDSARATKGRILTVEDH 560 (616)
T ss_dssp EEEEEEC---CTHHHHHHHHHHHHHHT-TTCEEEEEECSEEESC-------------CHHHH-HHHHHHTTTEEEEEEEE
T ss_pred CCEEEEE---eCHHHHHHHHHHHHHHh-cCCCEEEEEeCccCCC-------------CHHHH-HHHHHhcCCEEEEEcCC
Confidence 3576664 55566667777777877 8999999999865441 11112 3456677 66666544
Q ss_pred ccCCCchHHHHHHHHH
Q 024934 138 TRYGCMAAQMKAFFDS 153 (260)
Q Consensus 138 tY~g~~~~~mK~flD~ 153 (260)
...|++-+.+..++..
T Consensus 561 ~~~GG~G~~v~~~l~~ 576 (616)
T 3mos_A 561 YYEGGIGEAVSSAVVG 576 (616)
T ss_dssp ESTTSHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHh
Confidence 3468888888777654
No 218
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=31.89 E-value=1.4e+02 Score=22.00 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=29.9
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|++.+..........++|+.++++-
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 346789999998765544333455666665532211112357787777764
No 219
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=31.52 E-value=74 Score=21.27 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.||+-+++|++++ ++++++...+. + .|++.+.+++.+
T Consensus 3 ~~m~~v~ly~~~~C~~C~~~~~~L~----~-~~i~~~~~di~~ 40 (92)
T 2khp_A 3 GSMVDVIIYTRPGCPYCARAKALLA----R-KGAEFNEIDASA 40 (92)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHH----H-TTCCCEEEESTT
T ss_pred CCcccEEEEECCCChhHHHHHHHHH----H-cCCCcEEEECCC
Confidence 3555455666654 67776555443 2 467778888764
No 220
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=31.49 E-value=27 Score=30.38 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=27.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.|||+++..+..||...++ .+++.|.+ .|++|.++..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~-~la~~L~~-~GheV~v~~~ 37 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMV-PLCWALQA-SGHEVLIAAP 37 (391)
T ss_dssp CCEEEEECCSCHHHHHTTH-HHHHHHHH-TTCEEEEEEC
T ss_pred CcEEEEEcCCCcchhhhHH-HHHHHHHH-CCCEEEEecC
Confidence 3799988877788876554 36666777 8999988764
No 221
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=31.42 E-value=1.5e+02 Score=21.49 Aligned_cols=47 Identities=6% Similarity=-0.115 Sum_probs=28.0
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|+..+... ...+.++.++++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~n 119 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGN 119 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 34567899999987765544344556666655321 224566655554
No 222
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=31.22 E-value=87 Score=26.38 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCc---eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV---EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~---ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~G 135 (260)
++||.||= .|+ |...++.++.+ .|. ++.+++................. .... .+.+.++|.||+.
T Consensus 3 ~~~I~iIG---~G~---mG~aia~~l~~-~g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~-~~~~~~aDvVila 70 (280)
T 3tri_A 3 TSNITFIG---GGN---MARNIVVGLIA-NGYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDN-RQGALNADVVVLA 70 (280)
T ss_dssp CSCEEEES---CSH---HHHHHHHHHHH-TTCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCH-HHHHSSCSEEEEC
T ss_pred CCEEEEEc---ccH---HHHHHHHHHHH-CCCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCCh-HHHHhcCCeEEEE
Confidence 56787763 354 66666666655 566 77777765422111111111100 0111 4557899999999
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
.|.+
T Consensus 71 v~p~ 74 (280)
T 3tri_A 71 VKPH 74 (280)
T ss_dssp SCGG
T ss_pred eCHH
Confidence 9863
No 223
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=31.10 E-value=62 Score=28.10 Aligned_cols=38 Identities=3% Similarity=-0.176 Sum_probs=26.1
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+|++||+-...|+. +..+.+.+.+++ .|++++++.-.
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~-~g~~~~~~~t~ 66 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLRE-EGMTIHVRVTW 66 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHT-TTCCEEEEECC
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHH-cCCcEEEEEec
Confidence 678988874433433 566778888888 89888877643
No 224
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=31.02 E-value=43 Score=28.92 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLY 95 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li 95 (260)
|+||+||+--..++....++.+.+.|++ .|+++.+.
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~ 39 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVL 39 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 6889988855456667788999999988 89887654
No 225
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=30.99 E-value=33 Score=25.85 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.2
Q ss_pred CCCeEEEEEecCchhH--HHHHHHHHHHccC
Q 024934 58 TKLKIFIVFYSMYGHV--EGLAKRMKKGVDG 86 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT--~~lA~~i~~~l~~ 86 (260)
+|+|||.|+ +||+ .-||+.+.+.+..
T Consensus 3 ~m~~VLFVC---~gN~cRSpmAEa~~~~~~~ 30 (134)
T 2l17_A 3 HMKKVMFVC---KRNSCRSQMAEGFAKTLGA 30 (134)
T ss_dssp -CEEEEEEC---CSSTHHHHHHHHHHHHHSB
T ss_pred CCCEEEEEe---CCchHHHHHHHHHHHHHcC
Confidence 477999888 5554 3599999988854
No 226
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=30.95 E-value=1.7e+02 Score=21.90 Aligned_cols=71 Identities=7% Similarity=-0.005 Sum_probs=39.2
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
..-+..+|++||..-.-.......++.|+..+.. ..++++.++.+=-- ..........+..++...++.++
T Consensus 111 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~------~~~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 111 PLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH------HSCCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEE
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh------hCCCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEE
Confidence 3456799999998776554444556667666532 12477766666322 11111123445555666665544
No 227
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=30.94 E-value=2.7e+02 Score=25.12 Aligned_cols=49 Identities=6% Similarity=-0.002 Sum_probs=30.3
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
...+.++|+|||..-.-...-...+..++..+.. ...+.++|+.++++=
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ilv~NK 432 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN---DREMRDAIILIFANK 432 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHT---SGGGTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhh---hhhcCCCcEEEEEEC
Confidence 4567899999997765544434444555554421 123468888777764
No 228
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=30.75 E-value=62 Score=24.91 Aligned_cols=47 Identities=6% Similarity=-0.004 Sum_probs=29.7
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|++.+... ...++++.++++
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilV~N 139 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGN 139 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 34568999999987766544444456666655422 234677766665
No 229
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=30.52 E-value=48 Score=23.03 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=33.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCC-ceEEEEEcCCCCcHHHhhcCCCC---CCCCCcccccHhhhhhcCEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDG-VEGLLYRVPETLTREALDHMKVP---PRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G-~ev~li~l~~~~~~~~~~~~~~~---~~~dd~~~i~~~~l~~AD~II~ 134 (260)
|+||+|+ |. |. +...+.+.+.+ .| .++.+++.......... ...+. .+..+...+ .+.+..+|.||.
T Consensus 5 ~~~v~I~-G~--G~---iG~~~~~~l~~-~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~-~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVV-GA--GK---IGQMIAALLKT-SSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGL-AKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEE-CC--SH---HHHHHHHHHHH-CSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHH-HHHTTTCSEEEE
T ss_pred cCeEEEE-CC--CH---HHHHHHHHHHh-CCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHH-HHHHcCCCEEEE
Confidence 5566665 54 43 33344444444 56 67777775432111111 11110 001111122 234568899999
Q ss_pred Ecccc
Q 024934 135 GFPTR 139 (260)
Q Consensus 135 GsPtY 139 (260)
.+|..
T Consensus 76 ~~~~~ 80 (118)
T 3ic5_A 76 AAPFF 80 (118)
T ss_dssp CSCGG
T ss_pred CCCch
Confidence 88754
No 230
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=30.50 E-value=2e+02 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=36.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCc-eEEEEEcCC--CCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV-EGLLYRVPE--TLTREALDHMKVPPRDDDIPEISAADLVEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~-ev~li~l~~--~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~ 134 (260)
.|+||.||= .|+ |...++..|.+ .|. +|.+++... ......... .... .... .+.+.++|.||+
T Consensus 23 ~~~~I~iIG---~G~---mG~~~A~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~-g~~~----~~~~-~e~~~~aDvVi~ 89 (312)
T 3qsg_A 23 NAMKLGFIG---FGE---AASAIASGLRQ-AGAIDMAAYDAASAESWRPRAEEL-GVSC----KASV-AEVAGECDVIFS 89 (312)
T ss_dssp --CEEEEEC---CSH---HHHHHHHHHHH-HSCCEEEEECSSCHHHHHHHHHHT-TCEE----CSCH-HHHHHHCSEEEE
T ss_pred CCCEEEEEC---ccH---HHHHHHHHHHH-CCCCeEEEEcCCCCHHHHHHHHHC-CCEE----eCCH-HHHHhcCCEEEE
Confidence 578988873 343 34444444544 477 888888742 111111111 0000 0111 345789999999
Q ss_pred EccccC
Q 024934 135 GFPTRY 140 (260)
Q Consensus 135 GsPtY~ 140 (260)
..|...
T Consensus 90 ~vp~~~ 95 (312)
T 3qsg_A 90 LVTAQA 95 (312)
T ss_dssp CSCTTT
T ss_pred ecCchh
Confidence 999865
No 231
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=30.48 E-value=1.2e+02 Score=22.56 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=29.6
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|++.+... ....++++.++++=
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 136 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH---AYSENPDIVLCGNK 136 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SSSSSCCEEEEEEC
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 4567999999987765544344456666665321 12257787777664
No 232
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=30.21 E-value=34 Score=26.94 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=30.0
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+..+|++||..-.-...-...++.|++.+... ....++++.++++=
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~---~~~~~~piilV~NK 150 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNK 150 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEEC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCCEEEEEEC
Confidence 4567999999987765544444556676665321 12257787776663
No 233
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=30.13 E-value=1.9e+02 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=31.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.....-...++.++..+... ....++|+.++++=
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK 135 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNK 135 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEEC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEEEC
Confidence 4577999999988876654445556666654321 12467888777764
No 234
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=30.10 E-value=71 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
..++||||+- + |. .+..+++.+++ .|.++..++....
T Consensus 9 ~~~~~ili~g-~--g~---~~~~~~~a~~~-~G~~v~~~~~~~~ 45 (391)
T 1kjq_A 9 PAATRVMLLG-S--GE---LGKEVAIECQR-LGVEVIAVDRYAD 45 (391)
T ss_dssp TTCCEEEEES-C--SH---HHHHHHHHHHT-TTCEEEEEESSTT
T ss_pred CCCCEEEEEC-C--CH---HHHHHHHHHHH-cCCEEEEEECCCC
Confidence 3578999984 3 22 45566667777 7999988887543
No 235
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.88 E-value=79 Score=24.68 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=24.7
Q ss_pred cCCCCeEEEEEecCchh---------HHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 56 EITKLKIFIVFYSMYGH---------VEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~Gn---------T~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.+...||.||-.|.... ++.=...|.+.|.+ .|+++..+.+-
T Consensus 12 ~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~-~G~~v~~~~iV 62 (178)
T 3iwt_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIE-NGHKIIGYSLV 62 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHH-TTCEEEEEEEE
T ss_pred CCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHH-CCCEEEEEEEe
Confidence 34567999988764211 11223456666666 78888766654
No 236
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=29.71 E-value=1.4e+02 Score=23.35 Aligned_cols=46 Identities=2% Similarity=-0.055 Sum_probs=27.6
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.-+..+|++||..-.-...-...++.|++.+... .-.++++.++++
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~N 139 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGN 139 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 4467899999987765443333456666665422 124566666655
No 237
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=29.68 E-value=38 Score=28.28 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCc--eEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhh-hcCEEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV--EGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLV-EADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~--ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~-~AD~II~G 135 (260)
|+||.||= .|+ |...++..+.+ .|. ++.+++............ .... ...... .+.+. ++|.||+.
T Consensus 1 m~~I~iIG---~G~---mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~~~aDvVila 69 (281)
T 2g5c_A 1 MQNVLIVG---VGF---MGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDL-GIID--EGTTSI-AKVEDFSPDFVMLS 69 (281)
T ss_dssp CCEEEEES---CSH---HHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHT-TSCS--EEESCG-GGGGGTCCSEEEEC
T ss_pred CcEEEEEe---cCH---HHHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHC-CCcc--cccCCH-HHHhcCCCCEEEEc
Confidence 56777763 343 44444555544 565 677666542111111111 1100 001112 24466 89999999
Q ss_pred cccc
Q 024934 136 FPTR 139 (260)
Q Consensus 136 sPtY 139 (260)
.|.+
T Consensus 70 vp~~ 73 (281)
T 2g5c_A 70 SPVR 73 (281)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9987
No 238
>1c6w_A Maurocalcin, MCA; scorpion toxin, ryanodine receptor effector; NMR {Synthetic} SCOP: g.3.6.2 PDB: 1ie6_A 2kql_A*
Probab=29.67 E-value=15 Score=20.83 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=6.4
Q ss_pred CCcccCCCC
Q 024934 5 GGCVPSKKK 13 (260)
Q Consensus 5 ~~~~~~~~~ 13 (260)
|+|.|++++
T Consensus 1 gdClphl~~ 9 (33)
T 1c6w_A 1 GDCLPHLKL 9 (33)
T ss_dssp CCCCSSCCE
T ss_pred CccchHHHH
Confidence 678887654
No 239
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=29.61 E-value=1.8e+02 Score=21.99 Aligned_cols=48 Identities=2% Similarity=-0.170 Sum_probs=31.6
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|++.+... ...++++.++++=
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK 137 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNK 137 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 45578999999988776655445667777765432 2346777666653
No 240
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=29.57 E-value=69 Score=23.23 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=27.0
Q ss_pred eEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 61 KIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 61 KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..+++|++.. +..+.+...+.+-..+ .+++++.+++.+
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e-~~i~~~~vDId~ 68 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKK-SWFELEVINIDG 68 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHH-SCCCCEEEETTT
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHh-cCCeEEEEECCC
Confidence 4466666654 7888777777666555 678889999875
No 241
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=29.53 E-value=1.5e+02 Score=24.97 Aligned_cols=40 Identities=5% Similarity=-0.046 Sum_probs=30.1
Q ss_pred CCeEEEEEecCc--hhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMY--GHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~--GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..+|.+|+-+.. .....+.+.+.+.+++ .|.++.++....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~~~~~~~~~~ 44 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD-LGLDLRILYAER 44 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTCEEEEEECTT
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH-cCCeEEEEECCC
Confidence 467888886653 3456788999999988 799998886543
No 242
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=29.52 E-value=1.7e+02 Score=21.58 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=38.8
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
..-+..+|++||..-.-...-...++.|+..+... ...+.++.++++---.....+.....+..++..+++.++
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ----GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFM 152 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEE
Confidence 34577899999987655433334566676665421 224677766666422111111112334445555665544
No 243
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=29.51 E-value=75 Score=27.87 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 59 KLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
++||+|+|+-.. .-+-.=++.+.+.|++ .|.++..+++...
T Consensus 3 ~~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~~ 46 (364)
T 3i12_A 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDKA 46 (364)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred ccEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECCC
Confidence 578999998653 2334567889999988 8999999998753
No 244
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=29.49 E-value=80 Score=23.79 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCeEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+++||++|-++ |-++ .+..+.+.+++ +.++.++.
T Consensus 1 mK~tLILfGKP~C~vCe-~~s~~l~~led----eY~ilrVN 36 (124)
T 2g2q_A 1 MKNVLIIFGKPYCSICE-NVSDAVEELKS----EYDILHVD 36 (124)
T ss_dssp CCEEEEEEECTTCHHHH-HHHHHHHTTTT----TEEEEEEE
T ss_pred CCceEEEeCCCccHHHH-HHHHHHHHhhc----cccEEEEE
Confidence 789999999986 5555 44444577766 45555553
No 245
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=29.42 E-value=2e+02 Score=22.46 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=27.2
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|+..+... ...++++.++++
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~n 126 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELREN----ADDNVAVGLIGN 126 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH----CC--CEEEEEEC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEE
Confidence 44578999999987665544445566676665421 124566656554
No 246
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=29.34 E-value=41 Score=31.87 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
+|++|+||-+- .||+..+++++ ++ .|+++.+++..+ ...+.++|+|||.-|
T Consensus 3 ~m~~I~Iid~~-~g~~~~~~~~l----~~-~G~~~~vv~~~~-----------------------~~~l~~~DglILpGg 53 (555)
T 1jvn_A 3 HMPVVHVIDVE-SGNLQSLTNAI----EH-LGYEVQLVKSPK-----------------------DFNISGTSRLILPGV 53 (555)
T ss_dssp SSCEEEEECCS-CSCCHHHHHHH----HH-TTCEEEEESSGG-----------------------GCCSTTCSCEEEEEC
T ss_pred CCCEEEEEECC-CCCHHHHHHHH----HH-CCCEEEEECCcc-----------------------ccccccCCEEEECCC
Confidence 48899998642 35666555554 34 577777754211 112568999999654
No 247
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=29.28 E-value=15 Score=29.12 Aligned_cols=37 Identities=19% Similarity=0.044 Sum_probs=20.7
Q ss_pred CCeEEEEEecCchhH--HHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHV--EGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+|+-+...... ....+.+.+. .+.+++++....
T Consensus 1 m~~i~ill~~g~~~~e~~~~~~~l~~a----~~~~v~~vs~~~ 39 (188)
T 2fex_A 1 MTRIAIALAQDFADWEPALLAAAARSY----LGVEIVHATPDG 39 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHH----SCCEEEEEETTS
T ss_pred CcEEEEEeCCCchHHHHHHHHHHHhhc----CCceEEEEeCCC
Confidence 688988876532211 1233333332 367888888754
No 248
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=29.24 E-value=63 Score=28.91 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|+||+|+.+... ...=+-...+.|+. .|.+++++....
T Consensus 9 ~mkkV~ILl~dgf--~~~El~~p~dvL~~-Ag~~v~vvS~~~ 47 (365)
T 3fse_A 9 GKKKVAILIEQAV--EDTEFIIPCNGLKQ-AGFEVVVLGSRM 47 (365)
T ss_dssp --CEEEEECCTTB--CHHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred CceEEEEEECCCC--cHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 5789998876543 22223334455555 688999998764
No 249
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=29.03 E-value=81 Score=26.16 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
..+||.+|+++...+.....+.+.+.+++ .|++++...+.
T Consensus 132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~~ 171 (295)
T 3lft_A 132 NVKTIGALYSSSEDNSKTQVEEFKAYAEK-AGLTVETFAVP 171 (295)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEEES
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 56899999988655555566778888887 78887665553
No 250
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=29.00 E-value=54 Score=28.82 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=42.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCC-CceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc-c
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVD-GVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF-P 137 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~-G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs-P 137 (260)
.+++||. +|.+-..+...++.|++ . |++++++++....|- |...+ .+.+..++.||+.= .
T Consensus 220 ~dv~iia---~G~~~~~a~~Aa~~L~~-~~Gi~v~vi~~~~l~P~-------------d~~~i-~~~~~~~~~vv~vEe~ 281 (342)
T 2bfd_B 220 SDVTLVA---WGTQVHVIREVASMAKE-KLGVSCEVIDLRTIIPW-------------DVDTI-CKSVIKTGRLLISHEA 281 (342)
T ss_dssp SSEEEEE---CTTHHHHHHHHHHHHHH-HHCCCEEEEECCEEESC-------------CHHHH-HHHHHHHSCEEEEEEE
T ss_pred CCEEEEE---ECHHHHHHHHHHHHHHh-hcCCCEEEEeeeecCCC-------------CHHHH-HHHHhcCCEEEEEEeC
Confidence 4566555 44455556666666665 6 889999999865331 11112 34455555544432 2
Q ss_pred ccCCCchHHHHHHHHH
Q 024934 138 TRYGCMAAQMKAFFDS 153 (260)
Q Consensus 138 tY~g~~~~~mK~flD~ 153 (260)
...|++-..+..++..
T Consensus 282 ~~~gg~g~~v~~~l~~ 297 (342)
T 2bfd_B 282 PLTGGFASEISSTVQE 297 (342)
T ss_dssp ESTTCHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHh
Confidence 2356676667766644
No 251
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=28.96 E-value=94 Score=25.90 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=29.8
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
..+||.+|+++...+.....+.+.+.+++ .|++++...+.
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~~ 178 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATAL 178 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECS
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 57899999987655556667788888887 78887665553
No 252
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=28.90 E-value=1.1e+02 Score=24.42 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++||.||= .|+ |...++..+.+ .|.++.+++... +.+.++|.||+..|
T Consensus 18 ~~~~I~iiG---~G~---mG~~la~~l~~-~g~~V~~~~~~~------------------------~~~~~aD~vi~av~ 66 (209)
T 2raf_A 18 QGMEITIFG---KGN---MGQAIGHNFEI-AGHEVTYYGSKD------------------------QATTLGEIVIMAVP 66 (209)
T ss_dssp --CEEEEEC---CSH---HHHHHHHHHHH-TTCEEEEECTTC------------------------CCSSCCSEEEECSC
T ss_pred CCCEEEEEC---CCH---HHHHHHHHHHH-CCCEEEEEcCCH------------------------HHhccCCEEEEcCC
Confidence 577888763 343 44555555655 677887776432 13468999999998
Q ss_pred ccCCCchHHHHHHHHHh
Q 024934 138 TRYGCMAAQMKAFFDST 154 (260)
Q Consensus 138 tY~g~~~~~mK~flD~~ 154 (260)
.+ .++.+++.+
T Consensus 67 ~~------~~~~v~~~l 77 (209)
T 2raf_A 67 YP------ALAALAKQY 77 (209)
T ss_dssp HH------HHHHHHHHT
T ss_pred cH------HHHHHHHHH
Confidence 43 456666655
No 253
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=28.70 E-value=2e+02 Score=23.84 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=60.1
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||.||= .|+ |...++..+.+ .|.+|.+++............. .. ..... .+.+.++|.||+..|..
T Consensus 2 ~~i~iIG---~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~----~~~~~-~~~~~~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFIG---LGI---MGSAMAKNLVK-AGCSVTIWNRSPEKAEELAALG-AE----RAATP-CEVVESCPVTFAMLADP 68 (287)
T ss_dssp CEEEEEC---CSH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTT-CE----ECSSH-HHHHHHCSEEEECCSSH
T ss_pred CEEEEEe---ecH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHCC-Ce----ecCCH-HHHHhcCCEEEEEcCCH
Confidence 5777763 343 44555555555 6888988877643322222110 00 00111 34467899999999852
Q ss_pred CCCchHHHHHHH---HHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCcc
Q 024934 140 YGCMAAQMKAFF---DSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGY 204 (260)
Q Consensus 140 ~g~~~~~mK~fl---D~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~~ 204 (260)
..++..+ +.+... .-+|+. ++...+ .. ..+...+...+...|..+++.+.
T Consensus 69 -----~~~~~v~~~~~~l~~~----l~~~~~---vi~~st--~~-~~~~~~~~~~~~~~g~~~~~~pv 121 (287)
T 3pef_A 69 -----AAAEEVCFGKHGVLEG----IGEGRG---YVDMST--VD-PATSQRIGVAVVAKGGRFLEAPV 121 (287)
T ss_dssp -----HHHHHHHHSTTCHHHH----CCTTCE---EEECSC--CC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred -----HHHHHHHcCcchHhhc----CCCCCE---EEeCCC--CC-HHHHHHHHHHHHHhCCEEEECCC
Confidence 3455555 332211 113443 233322 11 23345666677777888776543
No 254
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=28.69 E-value=1.9e+02 Score=21.83 Aligned_cols=48 Identities=8% Similarity=-0.057 Sum_probs=29.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.++..+.. .....++++.++++=
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 133 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLD---KPQLQGIPVLVLGNK 133 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCCEEEEEEC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHh---CcccCCCCEEEEEEC
Confidence 346889999998876554333445555555421 112467887777764
No 255
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=28.51 E-value=67 Score=28.66 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=22.6
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
+||+|+-+. .+++.+.+.+++ .|+++.+++ ..
T Consensus 25 ~~I~ilGgG------~lg~~l~~aa~~-lG~~v~~~d-~~ 56 (403)
T 3k5i_A 25 RKVGVLGGG------QLGRMLVESANR-LNIQVNVLD-AD 56 (403)
T ss_dssp CEEEEECCS------HHHHHHHHHHHH-HTCEEEEEE-ST
T ss_pred CEEEEECCC------HHHHHHHHHHHH-CCCEEEEEE-CC
Confidence 578877644 356666666766 799999998 54
No 256
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=28.49 E-value=1.6e+02 Score=21.72 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=29.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..+..+|++||..-.-...-...++.|+..+... .-.++++.++++=
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 125 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALMLLGNK 125 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 4568999999987665543334456666665422 1156777777664
No 257
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=28.42 E-value=18 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.012 Sum_probs=25.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCc--eEEEEEcCCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGV--EGLLYRVPET 100 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~--ev~li~l~~~ 100 (260)
+.||.||...-+. ..|++-..+.|.+ .|+ ++++++++..
T Consensus 2 ~~ri~IV~arfn~--~~Ll~gA~~~L~~-~G~~~~i~~~~VPGa 42 (156)
T 2b99_A 2 TKKVGIVDTTFAR--VDMASIAIKKLKE-LSPNIKIIRKTVPGI 42 (156)
T ss_dssp CCEEEEEEESSCS--SCCHHHHHHHHHH-HCTTCEEEEEEESSG
T ss_pred CcEEEEEEEecch--HHHHHHHHHHHHH-cCCCCeEEEEECCcH
Confidence 4588888855443 6677777777776 565 4445777764
No 258
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=28.42 E-value=82 Score=24.69 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=34.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcccc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTR 139 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY 139 (260)
|||||+=+ |-.+-..+++.|.+ .|.+|..+.-.......... .......-|+.+.+.+.+...|.||......
T Consensus 1 MkilVtGa-----tG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 1 MKIAVLGA-----TGRAGSAIVAEARR-RGHEVLAVVRDPQKAADRLG-ATVATLVKEPLVLTEADLDSVDAVVDALSVP 73 (224)
T ss_dssp CEEEEETT-----TSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHTC-TTSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred CEEEEEcC-----CCHHHHHHHHHHHH-CCCEEEEEEecccccccccC-CCceEEecccccccHhhcccCCEEEECCccC
Confidence 56666332 23355555555555 57788777643211111100 0000001122222125577899998877654
No 259
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=28.37 E-value=68 Score=26.35 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=39.7
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCC--------------cHHHhhcCCCCCCCCCcccc
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETL--------------TREALDHMKVPPRDDDIPEI 121 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~--------------~~~~~~~~~~~~~~dd~~~i 121 (260)
+...+||.|| + .|+ |...++..|.+ .|.++.+++..... .......... ......
T Consensus 16 ~~~~~kIgiI-G--~G~---mG~alA~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 84 (245)
T 3dtt_A 16 YFQGMKIAVL-G--TGT---VGRTMAGALAD-LGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH----VHLAAF 84 (245)
T ss_dssp ---CCEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTT----CEEEEH
T ss_pred ccCCCeEEEE-C--CCH---HHHHHHHHHHH-CCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCc----eeccCH
Confidence 4468889887 4 443 55556666655 68889888765321 0000000000 001111
Q ss_pred cHhhhhhcCEEEEEccccC
Q 024934 122 SAADLVEADGFLFGFPTRY 140 (260)
Q Consensus 122 ~~~~l~~AD~II~GsPtY~ 140 (260)
.+.+.++|.||+..|...
T Consensus 85 -~e~~~~aDvVilavp~~~ 102 (245)
T 3dtt_A 85 -ADVAAGAELVVNATEGAS 102 (245)
T ss_dssp -HHHHHHCSEEEECSCGGG
T ss_pred -HHHHhcCCEEEEccCcHH
Confidence 345689999999999763
No 260
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=28.29 E-value=48 Score=29.25 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=23.2
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
..++|+||-+.. ++..+++.+++ .|+++.+++...
T Consensus 13 ~~k~IlIlG~G~------~g~~la~aa~~-~G~~vi~~d~~~ 47 (389)
T 3q2o_A 13 PGKTIGIIGGGQ------LGRMMALAAKE-MGYKIAVLDPTK 47 (389)
T ss_dssp TTSEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESST
T ss_pred CCCEEEEECCCH------HHHHHHHHHHH-cCCEEEEEeCCC
Confidence 356777775332 45556666666 799999888654
No 261
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=28.24 E-value=1.3e+02 Score=21.93 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=29.9
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
...+..+|++||..-.-...-...++.|+..+... .-.++++.++++=
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 117 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 117 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 45678999999987765443334456666655422 1246777776664
No 262
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=28.20 E-value=80 Score=28.09 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=32.6
Q ss_pred CCCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.++||+|+||-.. .-+-.=+..+.+.|++ .|.++..+++...
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~ 65 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDKQ 65 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CCceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECCC
Confidence 3568999998653 3344667899999998 8999999998753
No 263
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=28.08 E-value=60 Score=29.00 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=23.7
Q ss_pred CCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 57 ITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 57 ~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
+.++||||+-. |. ++..+++.+++ .|+++..++....
T Consensus 17 ~~~~~ili~g~---g~---~g~~~~~a~~~-~G~~v~~v~~~~~ 53 (433)
T 2dwc_A 17 DSAQKILLLGS---GE---LGKEIAIEAQR-LGVEVVAVDRYAN 53 (433)
T ss_dssp TTCCEEEEESC---SH---HHHHHHHHHHH-TTCEEEEEESSTT
T ss_pred CCCCEEEEECC---CH---HHHHHHHHHHH-CCCEEEEEECCCC
Confidence 35679999843 21 34445555555 7899988887543
No 264
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=27.90 E-value=1.2e+02 Score=27.33 Aligned_cols=32 Identities=3% Similarity=0.061 Sum_probs=19.9
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.++|++|=++.. ..+++. |.+ .|++++++...
T Consensus 190 ~~~V~viD~G~k---~ni~r~----L~~-~G~~v~vvp~~ 221 (379)
T 1a9x_B 190 PFHVVAYDFGAK---RNILRM----LVD-RGCRLTIVPAQ 221 (379)
T ss_dssp CEEEEEEESSCC---HHHHHH----HHH-TTEEEEEEETT
T ss_pred CCEEEEEECCCh---HHHHHH----HHH-CCCEEEEEecc
Confidence 358888876543 234444 444 58888888754
No 265
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=27.82 E-value=88 Score=24.67 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=42.3
Q ss_pred CCCeEEEEEecCch-hHHHHHHHHHHHccC-C--CCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh---hhcC
Q 024934 58 TKLKIFIVFYSMYG-HVEGLAKRMKKGVDG-V--DGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL---VEAD 130 (260)
Q Consensus 58 ~m~KVlIIy~S~~G-nT~~lA~~i~~~l~~-~--~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l---~~AD 130 (260)
...||+||...-+. -|+.|.+-..+.|.+ . ...++++++++... ++|.. .+++ ..||
T Consensus 16 ~~~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGaf---------------EiP~a-a~~la~~~~yD 79 (159)
T 1kz1_A 16 PELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSW---------------ELPQG-IRASIARNTYD 79 (159)
T ss_dssp TTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGG---------------GHHHH-HHHHHHHSCCS
T ss_pred CCCEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHH---------------HHHHH-HHHHHhcCCCC
Confidence 46789998866543 367777777777754 2 11358899998652 23333 3444 3699
Q ss_pred EEE-EEccccCCC
Q 024934 131 GFL-FGFPTRYGC 142 (260)
Q Consensus 131 ~II-~GsPtY~g~ 142 (260)
+|| +|+-+....
T Consensus 80 avIaLG~VIrG~T 92 (159)
T 1kz1_A 80 AVIGIGVLIKGST 92 (159)
T ss_dssp EEEEEEEEECCSS
T ss_pred EEEEecccccCCc
Confidence 985 555554444
No 266
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.66 E-value=2.4e+02 Score=22.72 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=29.6
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
...+|.+|..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 48 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NKYEALVATSQN 48 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCC
Confidence 456777777654 34566788999999988 899998887653
No 267
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=27.64 E-value=2.2e+02 Score=22.21 Aligned_cols=74 Identities=11% Similarity=-0.026 Sum_probs=38.0
Q ss_pred CCeEEEEEecCchhH--HHHHHHHHHHccCCCCceEEEEEcCC----CCcHHHhhcCCC-CCCC-CCc-ccccHhhhhhc
Q 024934 59 KLKIFIVFYSMYGHV--EGLAKRMKKGVDGVDGVEGLLYRVPE----TLTREALDHMKV-PPRD-DDI-PEISAADLVEA 129 (260)
Q Consensus 59 m~KVlIIy~S~~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~----~~~~~~~~~~~~-~~~~-dd~-~~i~~~~l~~A 129 (260)
|+|||.|+ +||+ .-||+.+.+.+.. ++++.--=+.. ...+.....+.. ..+. ... ..++.+.+.++
T Consensus 26 m~~VLFVC---tgNicRSpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l~~~~~~~~ 100 (168)
T 2wja_A 26 FDSILVIC---TGNICRSPIGERLLRRLLP--SKKINSAGVGALVDHAADESAIRVAEKNGLCLKGHRGTKFTSALARQY 100 (168)
T ss_dssp CSEEEEEE---SSSSSHHHHHHHHHHHHST--TSEEEEEETTCCTTCCCCHHHHHC---CCCCCTTCCCCBCCHHHHTTC
T ss_pred cCEEEEEc---CCcHHHHHHHHHHHHHhcC--CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCcccCccCCCChhHhccC
Confidence 66999999 5554 4599999988754 35544433321 111222222211 1111 111 12334567788
Q ss_pred CEEEEEcc
Q 024934 130 DGFLFGFP 137 (260)
Q Consensus 130 D~II~GsP 137 (260)
|.||.-..
T Consensus 101 DlIitM~~ 108 (168)
T 2wja_A 101 DLLLVMEY 108 (168)
T ss_dssp SEEEESSH
T ss_pred CEEEEcCH
Confidence 98887654
No 268
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=27.59 E-value=2.8e+02 Score=23.53 Aligned_cols=114 Identities=18% Similarity=0.072 Sum_probs=59.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCC-ceEEEEEcCCCCc-------HHHhhcCCCCCCCCCcc-cccHhhhhh
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDG-VEGLLYRVPETLT-------REALDHMKVPPRDDDIP-EISAADLVE 128 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G-~ev~li~l~~~~~-------~~~~~~~~~~~~~dd~~-~i~~~~l~~ 128 (260)
.++||.||= .|+ |...++..+.+ .| .+|.+++.....+ ........ .. .. .+.+.+
T Consensus 23 M~m~IgvIG---~G~---mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~-~e~~~~ 87 (317)
T 4ezb_A 23 MMTTIAFIG---FGE---AAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDD-VAGIAC 87 (317)
T ss_dssp SCCEEEEEC---CSH---HHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESS-GGGGGG
T ss_pred cCCeEEEEC---ccH---HHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCH-HHHHhc
Confidence 356777663 343 55666666766 78 8999988764111 11111110 11 12 345678
Q ss_pred cCEEEEEccccCCCchHHHHHHHHHhcccccCCCC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc
Q 024934 129 ADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKL-VGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG 203 (260)
Q Consensus 129 AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l-~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~ 203 (260)
+|.||+..|.... .+ .++.+.. .+ .++ +++...+ . ...+...+.+.+...|..+++.+
T Consensus 88 aDvVi~avp~~~~-----~~-~~~~i~~-----~l~~~~---ivv~~st--~-~p~~~~~~~~~l~~~g~~~~d~p 146 (317)
T 4ezb_A 88 ADVVLSLVVGAAT-----KA-VAASAAP-----HLSDEA---VFIDLNS--V-GPDTKALAAGAIATGKGSFVEGA 146 (317)
T ss_dssp CSEEEECCCGGGH-----HH-HHHHHGG-----GCCTTC---EEEECCS--C-CHHHHHHHHHHHHTSSCEEEEEE
T ss_pred CCEEEEecCCHHH-----HH-HHHHHHh-----hcCCCC---EEEECCC--C-CHHHHHHHHHHHHHcCCeEEecc
Confidence 9999999998542 12 2233321 23 233 2333322 1 12344666677777787776543
No 269
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=27.56 E-value=1.6e+02 Score=22.09 Aligned_cols=41 Identities=10% Similarity=-0.060 Sum_probs=23.7
Q ss_pred CCCeEEEEE-ecCchhH-HHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVF-YSMYGHV-EGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy-~S~~GnT-~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|+|+++|. .++||+. ..-+-.++..+.. .|.++.++-..+
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a-~~~~v~Vff~~D 46 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAA-FDQDVCVLFLDD 46 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-GCCEEEEEECGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEEhH
Confidence 477888776 4468752 2333333444434 467888877765
No 270
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=27.54 E-value=44 Score=29.48 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=28.0
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|||+|+.....|+...++. ++++|.+ .|++|.++--.
T Consensus 1 MrIli~~~gt~Ghv~p~~~-La~~L~~-~Gh~V~v~~~~ 37 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVA-LAARLRE-LGADARMCLPP 37 (404)
T ss_dssp -CEEEEEESSHHHHHHHHH-HHHHHHH-TTCCEEEEECG
T ss_pred CeEEEEeCCCCccHHHHHH-HHHHHHH-CCCeEEEEeCH
Confidence 6898887666899887765 6777877 89999887643
No 271
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=27.53 E-value=1.5e+02 Score=22.88 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=27.2
Q ss_pred hhhhhcCEEEEEccccCCCchHHHH-HHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMK-AFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK-~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..+..+|++||..-+-...-...++ .|++.+.. ...++++.++++
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~~piilv~n 142 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-----HCPNTPIILVGT 142 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HCSSCCEEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEe
Confidence 4567999999987665543333343 45555432 125778766665
No 272
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=27.48 E-value=1.8e+02 Score=21.10 Aligned_cols=48 Identities=2% Similarity=-0.123 Sum_probs=29.5
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++|+..-.-.......++.|++.+... ...+.++.++++=
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK 120 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNK 120 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEEC
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 34568999999987765544444556677665431 2345666665553
No 273
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=27.45 E-value=82 Score=28.33 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=35.2
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
.+||+|+-+.. +++.+...+++ .|+++.+++-....+..-..........+|...+ .+-+..+|+|++++
T Consensus 35 ~~~IlIlG~G~------lg~~~~~aa~~-lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l-~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 35 GAWLGMVGGGQ------LGRMFCFAAQS-MGYRVAVLDPDPASPAGAVADRHLRAAYDDEAAL-AELAGLCEAVSTEF 104 (419)
T ss_dssp TCEEEEECCSH------HHHHHHHHHHH-TTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHH-HHHHHHCSEEEECC
T ss_pred CCEEEEECCCH------HHHHHHHHHHH-CCCEEEEECCCCcCchhhhCCEEEECCcCCHHHH-HHHHhcCCEEEEcc
Confidence 45788875332 45556666666 7999888864332221111100001111222222 34446789988654
No 274
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=27.38 E-value=1.9e+02 Score=21.48 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=29.0
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
.-+..+|++||..-.-...-...++.|++.+... .-.++++.++++
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~n 123 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGN 123 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 3467899999988766544444556666655422 124677766665
No 275
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=27.31 E-value=76 Score=24.15 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHH
Q 024934 73 VEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 73 T~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
+..+++.+++.+.+..+.++.++++.+. ..-+|.+||+|..- ..++++..|
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~-------------------------s~~~DyfVIaTg~S----~rqv~Aiad 53 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKL-------------------------TSLFQRMIVATGDS----NRQVKALAN 53 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGT-------------------------CSSCSEEEEEECSS----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC-------------------------CcccCEEEEEEcCC----HHHHHHHHH
Confidence 4678889999997767889999999763 13569999998654 445555555
Q ss_pred Hh
Q 024934 153 ST 154 (260)
Q Consensus 153 ~~ 154 (260)
.+
T Consensus 54 ~v 55 (130)
T 2id1_A 54 SV 55 (130)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 276
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=26.94 E-value=1.2e+02 Score=23.70 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=28.3
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|+..+... ..++++.++++
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~n 127 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCGN 127 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-----STTCCEEEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEE
Confidence 45577899999987766544444556666665421 23556655554
No 277
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=26.93 E-value=75 Score=27.69 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=29.5
Q ss_pred CCeEEEEEecCch-h--HHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYG-H--VEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~G-n--T~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++||+||++.... + +-.=+..+.+.|++ .|.++..+++..
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITN 45 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECT
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcC
Confidence 5799999975432 1 22345778889988 899999998764
No 278
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=26.91 E-value=88 Score=27.70 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=33.0
Q ss_pred CCCeEEEEEecCc---hhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMY---GHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~---GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.++||+||||... --+-.=|..+.+.|+. .+.++..+++...
T Consensus 3 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~~ 47 (372)
T 3tqt_A 3 EKLHISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDHV 47 (372)
T ss_dssp CSEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CCCEEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECCC
Confidence 3678999998653 3345667899999988 8999999998753
No 279
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=26.86 E-value=34 Score=29.64 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=29.0
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
-...||||++.+...||..-+. .+++.|.+ .|++|.++.-.
T Consensus 19 ~~~~MRIL~~~~p~~GHv~P~l-~LA~~L~~-rGh~Vt~~t~~ 59 (400)
T 4amg_A 19 YFQSMRALFITSPGLSHILPTV-PLAQALRA-LGHEVRYATGG 59 (400)
T ss_dssp --CCCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEECS
T ss_pred CCCCCeEEEECCCchhHHHHHH-HHHHHHHH-CCCEEEEEeCc
Confidence 3456899988766689977554 45667777 89999987643
No 280
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=26.58 E-value=1.8e+02 Score=20.82 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=28.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++|+..-.-...-...++.|++.+... ....++++.++.+-
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~---~~~~~~p~iiv~nK 117 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV---KDSDDVPMVLVGNK 117 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH---HTCSCCCEEEEEEC
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEc
Confidence 4577899999877654433334456666655321 12346787777764
No 281
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=26.46 E-value=2.1e+02 Score=21.70 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=31.0
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.....-...++.++..+... ....++|+.++++=
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK 133 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNI---AELKDVPFVILGNK 133 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCCEEEEEEC
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcc---hhhcCCCEEEEEEC
Confidence 4467999999988877655445566666654321 12367887777764
No 282
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=26.33 E-value=77 Score=24.68 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=9.4
Q ss_pred hhhhcCEEEEEcc
Q 024934 125 DLVEADGFLFGFP 137 (260)
Q Consensus 125 ~l~~AD~II~GsP 137 (260)
.+.++|+|||.--
T Consensus 34 ~~~~~dglil~GG 46 (186)
T 2ywj_A 34 DLEGIDALIIPGG 46 (186)
T ss_dssp GGTTCSEEEECCS
T ss_pred HhccCCEEEECCC
Confidence 4567899998543
No 283
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=26.31 E-value=63 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHH
Q 024934 73 VEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 73 T~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
+..+++.+++.+.+..+.++.++++.+. -.-+|.+|++|..= ..++++..|
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~-------------------------s~~~DyfVIatg~S----~rqv~Aiad 53 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGI-------------------------SLIADFFLICHGNS----EKQVQAIAH 53 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTT-------------------------BC--CEEEEEEESS----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC-------------------------CcccCEEEEEEcCC----HHHHHHHHH
Confidence 3568888888887767889999999863 13569999998654 455555555
Q ss_pred Hhc
Q 024934 153 STG 155 (260)
Q Consensus 153 ~~~ 155 (260)
.+.
T Consensus 54 ~v~ 56 (125)
T 2o5a_A 54 ELK 56 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 284
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=26.27 E-value=55 Score=28.39 Aligned_cols=34 Identities=15% Similarity=-0.147 Sum_probs=24.8
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|+||+|+.+. ..+..+.+.+++ .|+++..++...
T Consensus 1 M~~Ililg~g------~~~~~~~~a~~~-~G~~v~~~~~~~ 34 (365)
T 2z04_A 1 MLTVGILGGG------QLGWMTILEGRK-LGFKFHVLEDKE 34 (365)
T ss_dssp -CEEEEECCS------HHHHHHHHHHGG-GTCEEEEECSSS
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 7899998754 356677777877 799988887654
No 285
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=26.24 E-value=37 Score=28.89 Aligned_cols=36 Identities=14% Similarity=-0.131 Sum_probs=23.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEE
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLY 95 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li 95 (260)
|+||+||+--..+....+++.+.+.+++ .|+++.+.
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~ 40 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVE 40 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHH-TTCEEEEE
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 7889988853345566778888888888 88887664
No 286
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=26.24 E-value=89 Score=23.83 Aligned_cols=106 Identities=11% Similarity=0.044 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCC----CCceE--EEEEcCCCCc----HHHhhcCCCCCCCCCcccccHhhhh
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGV----DGVEG--LLYRVPETLT----REALDHMKVPPRDDDIPEISAADLV 127 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~----~G~ev--~li~l~~~~~----~~~~~~~~~~~~~dd~~~i~~~~l~ 127 (260)
...||+|+=.+..|-|..+-..+...+... .|.+. ..+.+..... ..+.+ .+.+..+...-+.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G-------~~~~~~~~~~~~~ 94 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG-------QERYRTITTAYYR 94 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH-------HHHCHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC-------hHHHHHHHHHHHc
Confidence 477888888777899886655554443220 12111 2222221100 00000 0011111134578
Q ss_pred hcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 128 EADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 128 ~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.+|++||..-.-...-...++.|++.+... ...+.++.++++=
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 137 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNK 137 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 999999987665433334556676665432 2356777776663
No 287
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=26.18 E-value=77 Score=25.95 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.||||.||= .|+ |...++..+.+ .|.++.+++................. .... .+.+.++|.||+.+|
T Consensus 2 ~~m~i~iiG---~G~---mG~~~a~~l~~-~g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~-~~~~~~~D~Vi~~v~ 69 (259)
T 2ahr_A 2 NAMKIGIIG---VGK---MASAIIKGLKQ-TPHELIISGSSLERSKEIAEQLALPY----AMSH-QDLIDQVDLVILGIK 69 (259)
T ss_dssp -CCEEEEEC---CSH---HHHHHHHHHTT-SSCEEEEECSSHHHHHHHHHHHTCCB----CSSH-HHHHHTCSEEEECSC
T ss_pred CccEEEEEC---CCH---HHHHHHHHHHh-CCCeEEEECCCHHHHHHHHHHcCCEe----eCCH-HHHHhcCCEEEEEeC
Confidence 467888763 343 55566666766 67777777654221111111101110 0111 234678999999999
Q ss_pred cc
Q 024934 138 TR 139 (260)
Q Consensus 138 tY 139 (260)
.+
T Consensus 70 ~~ 71 (259)
T 2ahr_A 70 PQ 71 (259)
T ss_dssp GG
T ss_pred cH
Confidence 54
No 288
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=26.09 E-value=51 Score=28.48 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=26.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|||+++.....||..- +..+++.|.+ .|++|.++.-.
T Consensus 1 MrIl~~~~~~~Gh~~p-~~~la~~L~~-~Gh~V~~~~~~ 37 (384)
T 2p6p_A 1 MRILFVAAGSPATVFA-LAPLATAARN-AGHQVVMAANQ 37 (384)
T ss_dssp CEEEEECCSSHHHHHH-HHHHHHHHHH-TTCEEEEEECG
T ss_pred CEEEEEeCCccchHhH-HHHHHHHHHH-CCCEEEEEeCH
Confidence 6899876555788754 3456677777 79999988643
No 289
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=26.04 E-value=88 Score=23.38 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=23.0
Q ss_pred EEEEEecC-chhHH-----HHHHHHHHHccCCCCceEEEEEcCC
Q 024934 62 IFIVFYSM-YGHVE-----GLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 62 VlIIy~S~-~GnT~-----~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|++||.|. .|+.+ ..|+.+++. .|++.+.++|..
T Consensus 1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~----kgV~feEidI~~ 40 (121)
T 1u6t_A 1 VIRVYIASSSGSTAIKKKQQDVLGFLEA----NKIGFEEKDIAA 40 (121)
T ss_dssp CEEEEECTTCSCHHHHHHHHHHHHHHHH----TTCCEEEEECTT
T ss_pred CEEEEecCCCCCccchHHHHHHHHHHHH----CCCceEEEECCC
Confidence 46777665 46653 455555444 789999999974
No 290
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.99 E-value=3e+02 Score=23.49 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=29.9
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.++..+.. .....++|+.++++=
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilV~NK 275 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANK 275 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHh---hhccCCCeEEEEEEC
Confidence 3457899999998877554444445555554321 113457887777764
No 291
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=25.96 E-value=1.9e+02 Score=20.88 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=27.8
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|++.+... ....++|+.++++=
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 117 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNK 117 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HCCSCCCEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCcCCCcEEEEEEC
Confidence 34578899999987554432223445555554321 12357787776663
No 292
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=25.88 E-value=1.4e+02 Score=25.86 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=45.1
Q ss_pred cCCCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccc--cHh--hhhhcC
Q 024934 56 EITKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEI--SAA--DLVEAD 130 (260)
Q Consensus 56 ~~~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i--~~~--~l~~AD 130 (260)
+.+.+||+|+.--+ .+.|+..-..+.... . ..++++++++.+...+... .+++... +.+ +..++|
T Consensus 32 ~irplkI~ILnlmp~k~~te~qf~rlL~~~-~-~qv~v~~~~~~~~~~~~~~--------~~hl~~~y~~f~~~~~~~~D 101 (301)
T 2vdj_A 32 DIRALKIAILNLMPTKQETEAQLLRLIGNT-P-LQLDVHLLHMESHLSRNVA--------QEHLTSFYKTFRDIENEKFD 101 (301)
T ss_dssp TSCCEEEEEECCCSSHHHHHHHHHHHHTCS-S-SCEEEEEECCCC--------------------CCEECHHHHTTSCEE
T ss_pred CCCCceEEEEeCCCCcCchHHHHHHHhcCC-C-CcEEEEEEeccCCCCCCcc--------HHHHhhcccCcccccccccC
Confidence 45678999999755 467775443333322 1 3567777887654221100 0111111 122 246789
Q ss_pred EEE-EEccccCCC---c--hHHHHHHHHHh
Q 024934 131 GFL-FGFPTRYGC---M--AAQMKAFFDST 154 (260)
Q Consensus 131 ~II-~GsPtY~g~---~--~~~mK~flD~~ 154 (260)
++| .|+|+-... + =..++.+++..
T Consensus 102 glIITGap~~~~~~ed~~yw~el~~li~~~ 131 (301)
T 2vdj_A 102 GLIITGAPVETLSFEEVDYWEELKRIMEYS 131 (301)
T ss_dssp EEEECCCTTTTSCGGGSTTHHHHHHHHHHH
T ss_pred EEEECCCCCcCCCcccCchHHHHHHHHHHH
Confidence 985 588853222 1 14566777765
No 293
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=25.78 E-value=2.4e+02 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=22.5
Q ss_pred CCeEEEEEecCchhH--HHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSMYGHV--EGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT--~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
|+|||.|+ +||+ .-||+.+.+.+.. ++++.--=+
T Consensus 22 m~~VLFVC---tgN~cRSpmAEal~r~~~~--~~~v~SAGt 57 (167)
T 2fek_A 22 FNNILVVC---VGNICRSPTAERLLQRYHP--ELKVESAGL 57 (167)
T ss_dssp CCEEEEEE---SSSSSHHHHHHHHHHHHCT--TCEEEEEET
T ss_pred cCeEEEEc---CCcHHHHHHHHHHHHHhcC--CeEEEeeec
Confidence 56999998 5554 4599999988754 344443333
No 294
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=25.73 E-value=2e+02 Score=21.24 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=30.8
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-+-...-...++.|+..+... ....++|+.++++=
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~i~v~nK 118 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV---KDSEDVPMVLVGNK 118 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH---TTCSCCCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEC
Confidence 34578899999987766544344566666655421 13357787777764
No 295
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=25.66 E-value=2.1e+02 Score=21.40 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=30.0
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|+..+... ...++++.++++=
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK 130 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNK 130 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 34578999999987665544334556676665432 2246777666653
No 296
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=25.60 E-value=2.1e+02 Score=21.34 Aligned_cols=49 Identities=4% Similarity=-0.008 Sum_probs=30.4
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
...+..+|++||..-.-...-...++.|++.+... ....++++.++.+=
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~nK 130 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY---CTRNDIVNMLVGNK 130 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC---CSCSCCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCcEEEEEEC
Confidence 45578999999987765544344566677765421 12346777666653
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=25.53 E-value=1.4e+02 Score=21.67 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=29.3
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...+..|+..+... ..++++.++.+-
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piilv~nK 118 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-----VGDIPTALVQNK 118 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-----HCSCCEEEEEEC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEC
Confidence 45678999999988765543334455666655321 246777666653
No 298
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=25.37 E-value=15 Score=30.24 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=17.9
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHh
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
...+.++|.|||.||. .++.|++.+
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l 69 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWL 69 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHH
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHH
Confidence 4567899999999973 455566554
No 299
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=24.98 E-value=1.1e+02 Score=25.65 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcH-H-HhhcCCCCC---CCCCcccccHhhhhhcC
Q 024934 57 ITKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTR-E-ALDHMKVPP---RDDDIPEISAADLVEAD 130 (260)
Q Consensus 57 ~~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~-~-~~~~~~~~~---~~dd~~~i~~~~l~~AD 130 (260)
..|.++.++||+| .|.|..+.+.+..... .|-.+-++.-.....- . ......-.. ......++ .+.+.++|
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di-~~~~~~~d 92 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDV-AQEALGVA 92 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTCCCC-----------CEEEEESSGGGG-HHHHTTCS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHH-HHHhccCC
Confidence 3588999999996 7999888888887765 4778888773321110 0 000000000 00111223 45567789
Q ss_pred EEEEEccccCCCchHHHHHHHHHh
Q 024934 131 GFLFGFPTRYGCMAAQMKAFFDST 154 (260)
Q Consensus 131 ~II~GsPtY~g~~~~~mK~flD~~ 154 (260)
.|++==--++.. +..+++.+
T Consensus 93 vViIDEaQF~~~----v~el~~~l 112 (234)
T 2orv_A 93 VIGIDEGQFFPD----IVEFCEAM 112 (234)
T ss_dssp EEEESSGGGCTT----HHHHHHHH
T ss_pred EEEEEchhhhhh----HHHHHHHH
Confidence 998876666643 55555544
No 300
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=24.95 E-value=1.1e+02 Score=26.37 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=29.9
Q ss_pred CeEEEEEec--CchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 60 LKIFIVFYS--MYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 60 ~KVlIIy~S--~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
|||++|... ..|-.+..+..+++.|.+ . .+|+++....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~-~-~~V~v~~~~~ 40 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISK-A-HEVIVFGIHA 40 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTT-T-SEEEEEEESC
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHh-c-CCeEEEeecC
Confidence 789988643 356678888999999998 7 8999987654
No 301
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=24.92 E-value=1.2e+02 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEE
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLL 94 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~l 94 (260)
..+|+.-|.+|. .+|.++..+++.+..+. .|..++.
T Consensus 73 ~dKK~mSvsFsd~~~~~K~~i~ei~kkykd-~GykvE~ 109 (111)
T 2jmk_A 73 ADKKLMSVSFSDIDENMKKVIKATAEKFKN-KGFKVET 109 (111)
T ss_dssp TTTTEEEEEECSCCTTHHHHHHHHHHHGGG-GCCEEEE
T ss_pred cCCeEEEEEeehhhhhHHHHHHHHHHHhhc-CCceeec
Confidence 467777777886 79999999999999998 8887763
No 302
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=24.68 E-value=1.5e+02 Score=29.10 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=51.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhh--hhhcCEEEEE
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAAD--LVEADGFLFG 135 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~--l~~AD~II~G 135 (260)
.++||+|+-+. |-...-+....+.|+. .|++++++....-... +.. .-.. ..+ ...++ ..++|+||+-
T Consensus 533 ~~rkVaILl~d--Gfe~~El~~p~dvL~~-AG~~V~ivS~~gg~V~-ss~--G~~v-~~d---~~l~~v~~~~yDaViVP 602 (715)
T 1sy7_A 533 KSRRVAIIIAD--GYDNVAYDAAYAAISA-NQAIPLVIGPRRSKVT-AAN--GSTV-QPH---HHLEGFRSTMVDAIFIP 602 (715)
T ss_dssp TTCEEEEECCT--TBCHHHHHHHHHHHHH-TTCEEEEEESCSSCEE-BTT--SCEE-CCS---EETTTCCGGGSSEEEEC
T ss_pred CCCEEEEEEcC--CCCHHHHHHHHHHHHh-cCCEEEEEECCCCcee-cCC--CceE-ecc---cccccCCcccCCEEEEc
Confidence 35789988764 3333334445666666 6899999987542110 000 0000 001 11222 3578999886
Q ss_pred ccc---cCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 136 FPT---RYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 136 sPt---Y~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
... +.......+..|+.+.. -.||+++.+++
T Consensus 603 GG~~~~~~l~~~~~l~~~Lr~~~-------~~gK~IaAIC~ 636 (715)
T 1sy7_A 603 GGAKAAETLSKNGRALHWIREAF-------GHLKAIGATGE 636 (715)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred CCcccHhhhccCHHHHHHHHHHH-------hCCCEEEEECH
Confidence 532 11222445666666543 25788766554
No 303
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=24.63 E-value=2.3e+02 Score=21.51 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=30.8
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...+..++..+.. .....++|+.++++=
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK 139 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFANK 139 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEEC
Confidence 3457899999998876654434455666665431 113457887777763
No 304
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=24.54 E-value=74 Score=25.98 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=29.5
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.++.+++.+.......+++.|++.+++ .|+++++..+.
T Consensus 128 l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGi~v~i~~~~ 165 (258)
T 3lvu_A 128 LALRFLLRQGDSDMQTVLEIYTRALER-LGIAAQIEKVD 165 (258)
T ss_dssp CCCEEEEETTCHHHHHHHHHHHHHHHT-TTCCCEEEEEC
T ss_pred EEEEEEecCCChhHHHHHHHHHHHHHH-cCCeeEEEecC
Confidence 356566666555678899999999999 89999887664
No 305
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=24.42 E-value=1.9e+02 Score=21.20 Aligned_cols=51 Identities=8% Similarity=-0.080 Sum_probs=29.8
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|+..+..........++++.++++=
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence 346789999998766554433445666665542211112356787777764
No 306
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=24.40 E-value=63 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=21.0
Q ss_pred CCeEEEEEecC--------chhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSM--------YGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~--------~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
++|+.||..+. +.|...+++.+...+++ .|+++..+.+
T Consensus 5 ~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~-~G~~v~~~~i 50 (167)
T 2g2c_A 5 HIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQD-YSYELISEVV 50 (167)
T ss_dssp EEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC-----CEEEEEEEEE
T ss_pred ccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHH-CCCEEeEEEE
Confidence 45888887552 34666666664444666 6887765544
No 307
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=24.10 E-value=2.3e+02 Score=21.35 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=29.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...+..|+..+... ....++|+.++++=
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 128 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRV---KEDENVPFLLVGNK 128 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH---TTCSCCCEEEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEec
Confidence 4467899999987655433334456666655321 12347887777664
No 308
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=24.04 E-value=64 Score=28.34 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=26.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.|+||+++-+...||..-+.. +++.|.+ .|++|.++.-.
T Consensus 11 ~~~~Il~~~~~~~GHv~p~l~-la~~L~~-~Gh~V~~~~~~ 49 (424)
T 2iya_A 11 TPRHISFFNIPGHGHVNPSLG-IVQELVA-RGHRVSYAITD 49 (424)
T ss_dssp CCCEEEEECCSCHHHHHHHHH-HHHHHHH-TTCEEEEEECG
T ss_pred ccceEEEEeCCCCcccchHHH-HHHHHHH-CCCeEEEEeCH
Confidence 478999875555799765543 4455656 68898887644
No 309
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.03 E-value=2.3e+02 Score=21.54 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=29.5
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
...+..+|++||..-.-.......++.|+..+... ...++++.++++-
T Consensus 87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 134 (213)
T 3cph_A 87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 134 (213)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----TTTCSEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45678999999987765443334456666655422 1235777666663
No 310
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=23.97 E-value=1.5e+02 Score=24.63 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=33.1
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHH---HHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFF---DSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~fl---D~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
+.+.++|.||+.+|.. ..++..+ +.+... .-.|+. +++... +. ..+...+.+.+...|..++
T Consensus 57 ~~~~~~D~vi~~v~~~-----~~~~~~~~~~~~l~~~----l~~~~~---vv~~s~--~~-~~~~~~l~~~~~~~g~~~~ 121 (299)
T 1vpd_A 57 AIAEQCDVIITMLPNS-----PHVKEVALGENGIIEG----AKPGTV---LIDMSS--IA-PLASREISDALKAKGVEML 121 (299)
T ss_dssp HHHHHCSEEEECCSSH-----HHHHHHHHSTTCHHHH----CCTTCE---EEECSC--CC-HHHHHHHHHHHHTTTCEEE
T ss_pred HHHhCCCEEEEECCCH-----HHHHHHHhCcchHhhc----CCCCCE---EEECCC--CC-HHHHHHHHHHHHHcCCeEE
Confidence 4467899999999842 2345555 222110 113443 233321 22 2233556666666677766
Q ss_pred cC
Q 024934 201 PI 202 (260)
Q Consensus 201 ~~ 202 (260)
..
T Consensus 122 ~~ 123 (299)
T 1vpd_A 122 DA 123 (299)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 311
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=23.61 E-value=3.6e+02 Score=23.41 Aligned_cols=91 Identities=11% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCeEEEEEecC-chhH-HHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh-hhcCEEEEE
Q 024934 59 KLKIFIVFYSM-YGHV-EGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL-VEADGFLFG 135 (260)
Q Consensus 59 m~KVlIIy~S~-~GnT-~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l-~~AD~II~G 135 (260)
-++|.+||... +|.. ...++.+.+.+++ .|+++........ ...++..+ ..+| ..+|+||+.
T Consensus 154 w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~-~g~~v~~~~~~~~-------------~~~d~~~~-l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 154 WSRAALVYSDDKLERNCYFTLEGVHEVFQE-EGLHTSIYSFDET-------------KDLDLEDI-VRNIQASERVVIMC 218 (441)
T ss_dssp CCEEEEEEECCSSSCHHHHHHHHHHHHHHH-HTCEEEEEEECTT-------------SCCCHHHH-HHHHHHHCSEEEEE
T ss_pred CcEEEEEEEcCCcccchHHHHHHHHHHHHh-cCcEEEEEEecCC-------------cccCHHHH-HHHhhcCCcEEEEe
Confidence 57898888653 5642 2366777777776 6777654332211 01123222 3333 688998876
Q ss_pred ccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 136 FPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 136 sPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
... ..+..|+..... ..+.+|...+|++.
T Consensus 219 ~~~------~~~~~~~~~~~~----~gl~~~~~v~i~~~ 247 (441)
T 1jdp_A 219 ASS------DTIRSIMLVAHR----HGMTSGDYAFFNIE 247 (441)
T ss_dssp SCH------HHHHHHHHHHHH----TTCTTTTCEEEEEC
T ss_pred cCH------HHHHHHHHHHHH----cCCCCCCEEEEEEe
Confidence 532 233444444322 14566655455554
No 312
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=23.60 E-value=39 Score=30.15 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=27.5
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
.|||||++-+...||..- +-.+++.|.+ .|++|.++--.+
T Consensus 19 ~~mrIl~~~~~~~GHv~p-~l~la~~L~~-~GheV~~~~~~~ 58 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFG-LVPLAWAFRA-AGHEVRVVASPA 58 (441)
T ss_dssp CCCEEEEECCSCHHHHTT-THHHHHHHHH-TTCEEEEEECGG
T ss_pred CccEEEEEcCCCcchHhH-HHHHHHHHHH-CCCeEEEEeCch
Confidence 588999885545688763 3455666666 788998876443
No 313
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=23.34 E-value=55 Score=26.36 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=35.6
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
.++||.|| | .|+ |...++..+.+ .|.++.+++-.......... ... ..... .+.+.++|.||+.+|
T Consensus 27 ~~~~I~ii-G--~G~---~G~~la~~l~~-~g~~V~~~~r~~~~~~~~~~-~g~-----~~~~~-~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGIL-G--SGD---FARSLATRLVG-SGFKVVVGSRNPKRTARLFP-SAA-----QVTFQ-EEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESSHHHHHHHSB-TTS-----EEEEH-HHHTTSCSEEEECSC
T ss_pred CCCEEEEE-c--cCH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH-cCC-----ceecH-HHHHhCCCEEEECCC
Confidence 56788877 3 454 44455555555 57778777653211111100 000 01111 244678999999999
Q ss_pred cc
Q 024934 138 TR 139 (260)
Q Consensus 138 tY 139 (260)
.+
T Consensus 93 ~~ 94 (215)
T 2vns_A 93 RE 94 (215)
T ss_dssp GG
T ss_pred hH
Confidence 65
No 314
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=23.29 E-value=2.3e+02 Score=21.01 Aligned_cols=74 Identities=19% Similarity=0.093 Sum_probs=36.2
Q ss_pred CeEEEEEecCchhH--HHHHHHHHHHccCCCCceEEEEEcCCCCcH-HHhhcCC-CCCC-CCCc-ccccHhhhhhcCEEE
Q 024934 60 LKIFIVFYSMYGHV--EGLAKRMKKGVDGVDGVEGLLYRVPETLTR-EALDHMK-VPPR-DDDI-PEISAADLVEADGFL 133 (260)
Q Consensus 60 ~KVlIIy~S~~GnT--~~lA~~i~~~l~~~~G~ev~li~l~~~~~~-~~~~~~~-~~~~-~dd~-~~i~~~~l~~AD~II 133 (260)
+|||.|+ +||+ .-||+.+.+.+.. ..+++.--=+....++ .....+. -..+ .... ..++...+.++|.||
T Consensus 4 ~~VLFVC---~gN~cRSpmAEai~~~~~~-~~~~v~SAGt~~~~~~p~a~~~l~~~Gid~s~~~sr~l~~~~~~~~D~Ii 79 (139)
T 1jl3_A 4 KIIYFLC---TGNSCRSQMAEGWAKQYLG-DEWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVV 79 (139)
T ss_dssp EEEEEEE---SSSSSHHHHHHHHHHHHSC-TTEEEEEEESSCCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHTTCSEEE
T ss_pred CeEEEEc---CCchHHHHHHHHHHHHhCC-CCEEEEcCcCCCCCCCHHHHHHHHHcCCCcccCccCcCCHHHhhcCCEEE
Confidence 4788888 5554 4599999988854 3333333323222111 1111100 0010 0111 123355677889888
Q ss_pred EEcc
Q 024934 134 FGFP 137 (260)
Q Consensus 134 ~GsP 137 (260)
--+.
T Consensus 80 ~m~~ 83 (139)
T 1jl3_A 80 TLCG 83 (139)
T ss_dssp ECSH
T ss_pred EeCc
Confidence 7654
No 315
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=23.21 E-value=2.6e+02 Score=26.90 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=34.6
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEE-Ecc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLF-GFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~-GsP 137 (260)
-++|+||= ...++|..+++++.+ .|++++++..... .++.++|+||| |.|
T Consensus 446 Gk~IlviD-~gdsf~~~l~~~l~~-----~G~~v~Vv~~d~~-----------------------~~~~~~DgIIlsGGP 496 (645)
T 3r75_A 446 GCRALIVD-AEDHFTAMIAQQLSS-----LGLATEVCGVHDA-----------------------VDLARYDVVVMGPGP 496 (645)
T ss_dssp TCEEEEEE-SSCTHHHHHHHHHHH-----TTCEEEEEETTCC-----------------------CCGGGCSEEEECCCS
T ss_pred CCEEEEEE-CCccHHHHHHHHHHH-----CCCEEEEEECCCc-----------------------ccccCCCEEEECCCC
Confidence 46777764 234577777777653 4778888876541 12468899999 666
Q ss_pred ccC
Q 024934 138 TRY 140 (260)
Q Consensus 138 tY~ 140 (260)
--.
T Consensus 497 g~p 499 (645)
T 3r75_A 497 GDP 499 (645)
T ss_dssp SCT
T ss_pred CCh
Confidence 443
No 316
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=22.99 E-value=1.2e+02 Score=23.33 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=28.4
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|++.+... ...++++.++++
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~N 141 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA----AHETVPIMLVGN 141 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----C---CCEEEEEE
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 34578999999987765544444566676665422 224677766665
No 317
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=22.91 E-value=2.2e+02 Score=20.54 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=29.0
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+.++|++||..-.-...-...+..++..+.. .....++++.++++=
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 110 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANK 110 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCeEEEEEEC
Confidence 347899999998766544333445556655421 113457787777764
No 318
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=22.91 E-value=43 Score=26.58 Aligned_cols=24 Identities=13% Similarity=0.429 Sum_probs=18.4
Q ss_pred CCCeEEEEEecCchhH--HHHHHHHHHHc
Q 024934 58 TKLKIFIVFYSMYGHV--EGLAKRMKKGV 84 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT--~~lA~~i~~~l 84 (260)
.|+|||.|+ +||+ .-||+.|.+.+
T Consensus 17 ~M~kVLFVC---tGNiCRSpmAE~i~r~~ 42 (173)
T 4etm_A 17 SMISVLFVC---LGNICRSPMAEAIFRDL 42 (173)
T ss_dssp SCEEEEEEE---SSSSSHHHHHHHHHHHH
T ss_pred CccEEEEEe---CCcchhhHHHHHHHHHH
Confidence 599999999 6665 45888877665
No 319
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=22.79 E-value=41 Score=26.96 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=36.8
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC-CCC--CcccccHhhhhhcCEEEEEc
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP-RDD--DIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~-~~d--d~~~i~~~~l~~AD~II~Gs 136 (260)
|||+|+= .|+ +...+++.|.+ .|.++.+++-................ ..| +...+....+.+||.||+.+
T Consensus 1 M~iiIiG---~G~---~G~~la~~L~~-~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 1 MKVIIIG---GET---TAYYLARSMLS-RKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CCEEEEC---CHH---HHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred CEEEEEC---CCH---HHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 5666654 343 44555555655 68889998864321111111111110 001 11111122467899999999
Q ss_pred ccc
Q 024934 137 PTR 139 (260)
Q Consensus 137 PtY 139 (260)
|..
T Consensus 74 ~~d 76 (218)
T 3l4b_C 74 PRD 76 (218)
T ss_dssp SCH
T ss_pred CCc
Confidence 864
No 320
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=22.56 E-value=76 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=19.9
Q ss_pred CCeEEEEEecCchhH-HHHHHHHHHHccCCCCceEEEEEc
Q 024934 59 KLKIFIVFYSMYGHV-EGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 59 m~KVlIIy~S~~GnT-~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
|+||+||-+.. .++ .. +.+.+++ .|++++++..
T Consensus 2 ~~~i~il~~~~-~~~~~~----~~~~l~~-~g~~~~~~~~ 35 (213)
T 3d54_D 2 KPRACVVVYPG-SNCDRD----AYHALEI-NGFEPSYVGL 35 (213)
T ss_dssp CCEEEEECCTT-EEEHHH----HHHHHHT-TTCEEEEECT
T ss_pred CcEEEEEEcCC-CCccHH----HHHHHHH-CCCEEEEEec
Confidence 67898886543 222 22 3555666 6888877653
No 321
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=22.50 E-value=2.5e+02 Score=21.16 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=28.9
Q ss_pred hhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 125 DLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 125 ~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
-+..+|++||..-+-...-...++.|+..+... ....+.++.++++-
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 128 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF---RNASEVPMVLVGTQ 128 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTT---SCGGGSCEEEEEEC
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 567899999987655543334556677766421 12346777776664
No 322
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=22.45 E-value=1.5e+02 Score=24.02 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=27.3
Q ss_pred CeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
.++.+++.+ .....+|+.|++.+++ .|+++++..+.
T Consensus 129 l~l~~~~~~--~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 164 (259)
T 3pam_A 129 FQFEIMTQS--LEEEKVALAFQSNLSR-LGIHAEIRTVD 164 (259)
T ss_dssp CEEEEEESS--HHHHHHHHHHHHHHHT-TTCEEEEEECC
T ss_pred EEEEEEeCC--chHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 345555543 5567899999999999 89999987764
No 323
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=22.40 E-value=2.6e+02 Score=25.30 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=20.5
Q ss_pred CCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEe
Q 024934 163 LVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFV 200 (260)
Q Consensus 163 l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV 200 (260)
|+|+++++++..-...|.......++...+..+|+.+.
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~ 226 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 226 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEE
Confidence 57778776654311112222334666666777777654
No 324
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.32 E-value=2.3e+02 Score=21.45 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=19.9
Q ss_pred CCeEEEEEecC-ch--hHHHHHHHHHHHccCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSM-YG--HVEGLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~-~G--nT~~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++||+|+-+.. .| -.+ ..+.+. + .|.+++++....
T Consensus 2 ~~~v~ill~~~~~g~~~~~-~~e~~~----~-~~~~v~~vs~~~ 39 (175)
T 3cne_A 2 AKKVAVLAVNPVNGCGLFQ-YLEAFF----E-NGISYKVFAVSD 39 (175)
T ss_dssp CCEEEEEECSSBCHHHHHH-HHHHHH----H-TTCEEEEEESSS
T ss_pred CcEEEEEEecCcCCCccch-hhheee----e-CCCEEEEEECCC
Confidence 36888877551 13 111 233333 3 588999998863
No 325
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=22.31 E-value=78 Score=20.58 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=21.5
Q ss_pred CeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 60 LKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 60 ~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+|++ |++. =+.++.+...+.+-..+..++++..+++.
T Consensus 1 m~v~~-f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~ 39 (85)
T 1ego_A 1 MQTVI-FGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIR 39 (85)
T ss_dssp CEEEE-ECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHH
T ss_pred CEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 45555 4444 47777766655543322246777777764
No 326
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=22.21 E-value=44 Score=29.44 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=25.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
|+||+++-+...||.. -...+++.|.+ .|++|.++.-.
T Consensus 7 m~kIl~~~~~~~Gh~~-p~~~la~~L~~-~G~~V~~~~~~ 44 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVN-PSLEVIRELVA-RGHRVTYAIPP 44 (430)
T ss_dssp -CEEEEECCSCHHHHG-GGHHHHHHHHH-TTCEEEEEECG
T ss_pred cceEEEEeCCCCcccc-chHHHHHHHHH-CCCeEEEEeCH
Confidence 6899987554568765 33455566666 68888887644
No 327
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=22.15 E-value=59 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCchh---HHHHHHHHHHHccCCCCceE
Q 024934 58 TKLKIFIVFYSMYGH---VEGLAKRMKKGVDGVDGVEG 92 (260)
Q Consensus 58 ~m~KVlIIy~S~~Gn---T~~lA~~i~~~l~~~~G~ev 92 (260)
+|++|.|+.+|..++ -..+|+.+.+.|.+ .|+.+
T Consensus 12 ~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~-~G~~v 48 (215)
T 2a33_A 12 KFRRICVFCGSSQGKKSSYQDAAVDLGNELVS-RNIDL 48 (215)
T ss_dssp SCSEEEEECCSSCCSSHHHHHHHHHHHHHHHH-TTCEE
T ss_pred CCCeEEEEECCCCCCchHHHHHHHHHHHHHHH-CCCEE
Confidence 577788887997553 24578888888876 56544
No 328
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=21.67 E-value=2.1e+02 Score=21.19 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=29.7
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...++.|+..+... ....++++.++++-
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~nK 132 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFPMILVANK 132 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH---HTSSCCCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEC
Confidence 34578999999987765543334455666654321 12356777776664
No 329
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=21.59 E-value=1.8e+02 Score=22.35 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=30.0
Q ss_pred HhhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEe
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVS 173 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s 173 (260)
..-+..+|++||..-.-...-...++.|+..+... ...++++.++++
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~n 138 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL----ASPNIVVILCGN 138 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----TCTTCEEEEEEE
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 45578999999988766544444556676665421 124677766665
No 330
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=21.32 E-value=1.8e+02 Score=27.17 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=20.8
Q ss_pred CeEEEE-EecCchhHHHHHHHHHHHccCCCCceEEEEEc
Q 024934 60 LKIFIV-FYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRV 97 (260)
Q Consensus 60 ~KVlII-y~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l 97 (260)
.||+|| |+| ++|..+++++.+ .|+.++++..
T Consensus 11 ~~I~IlD~g~--~~~~~i~r~lr~-----~Gv~~~i~p~ 42 (527)
T 3tqi_A 11 HRILILDFGS--QYAQLIARRVRE-----IGVYCELMPC 42 (527)
T ss_dssp SEEEEEECSC--TTHHHHHHHHHH-----HTCEEEEEET
T ss_pred CeEEEEECCC--ccHHHHHHHHHH-----CCCeEEEEEC
Confidence 589988 454 456667776543 4778888754
No 331
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=21.31 E-value=88 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCeEEEEEecCch-h--HHHHHHHHHHHc-cCCCCceEEEEEcCC
Q 024934 59 KLKIFIVFYSMYG-H--VEGLAKRMKKGV-DGVDGVEGLLYRVPE 99 (260)
Q Consensus 59 m~KVlIIy~S~~G-n--T~~lA~~i~~~l-~~~~G~ev~li~l~~ 99 (260)
++||+|||+-... + +-.=+..+.+.| ++ .|.++..+++..
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~ 46 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQ 46 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcc-cCcEEEEEEEcC
Confidence 5789999976433 2 122367778888 77 899999999864
No 332
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=1.6e+02 Score=20.95 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCchhHH--HHHHHHHHHccCCCCceEEEEEcCC
Q 024934 58 TKLKIFIVFYSMYGHVE--GLAKRMKKGVDGVDGVEGLLYRVPE 99 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~--~lA~~i~~~l~~~~G~ev~li~l~~ 99 (260)
++|+|.|...+.-+..+ +--+.+.+-|++ .|++.+.++|..
T Consensus 6 ~~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~-~gi~y~~vdI~~ 48 (111)
T 2ct6_A 6 SGMVIRVFIASSSGFVAIKKKQQDVVRFLEA-NKIEFEEVDITM 48 (111)
T ss_dssp CCCCEEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCEEEEETTT
T ss_pred CccEEEEEEcCCCCCcccchhHHHHHHHHHH-cCCCEEEEECCC
Confidence 35666654434334444 222233333444 678899999875
No 333
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=21.04 E-value=1.2e+02 Score=22.51 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=35.3
Q ss_pred cCCCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCC---CCCCcccccHhhhhhcCEE
Q 024934 56 EITKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPP---RDDDIPEISAADLVEADGF 132 (260)
Q Consensus 56 ~~~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~---~~dd~~~i~~~~l~~AD~I 132 (260)
....++|+|+ |. |. +...+++.|.+ .|.++.+++................. +..+...+....+..+|.|
T Consensus 16 ~~~~~~v~Ii-G~--G~---iG~~la~~L~~-~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 16 KQKSKYIVIF-GC--GR---LGSLIANLASS-SGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp -CCCCEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred ccCCCcEEEE-CC--CH---HHHHHHHHHHh-CCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 3345677776 43 43 23333344444 57788888765321111000000000 0011111101126789999
Q ss_pred EEEcccc
Q 024934 133 LFGFPTR 139 (260)
Q Consensus 133 I~GsPtY 139 (260)
|+.+|..
T Consensus 89 i~~~~~~ 95 (155)
T 2g1u_A 89 FAFTNDD 95 (155)
T ss_dssp EECSSCH
T ss_pred EEEeCCc
Confidence 9999863
No 334
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=20.86 E-value=2e+02 Score=26.22 Aligned_cols=37 Identities=3% Similarity=-0.025 Sum_probs=27.7
Q ss_pred eEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 61 KIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 61 KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
++-+++.+.......+|+.|++.+++ .|+++++..+.
T Consensus 345 ~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 381 (509)
T 1uqw_A 345 STTLWSSHNHSTAQKVLQFTQQQLAQ-VGIKAQVTAMD 381 (509)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHH-TTEEEEEEEEC
T ss_pred eEEEEecCCCchHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 45555544444567899999999999 79999887654
No 335
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=20.84 E-value=3.4e+02 Score=21.97 Aligned_cols=71 Identities=10% Similarity=-0.038 Sum_probs=35.1
Q ss_pred hhhhhcCEEEEEccccCCCc--hHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCC---hHHHHHHHHHHHHhcCcE
Q 024934 124 ADLVEADGFLFGFPTRYGCM--AAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGG---QETTAWTAITQLAHHGML 198 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~--~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg---~e~~l~~l~~~l~~~gm~ 198 (260)
+.+..+|.||...+...... -...+++++.+.. ..-|.+..+++++..... .......+...+...|+.
T Consensus 61 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~------~gv~~iv~~Ss~~~~~~~~~~~~~~~~~~e~~~~~~g~~ 134 (289)
T 3e48_A 61 EAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQ------SGVAHIIFIGYYADQHNNPFHMSPYFGYASRLLSTSGID 134 (289)
T ss_dssp HHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHH------TTCCEEEEEEESCCSTTCCSTTHHHHHHHHHHHHHHCCE
T ss_pred HHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHH------cCCCEEEEEcccCCCCCCCCccchhHHHHHHHHHHcCCC
Confidence 45678999998776543221 1345667776532 112455455554432111 111123444555566665
Q ss_pred Ee
Q 024934 199 FV 200 (260)
Q Consensus 199 vV 200 (260)
+.
T Consensus 135 ~~ 136 (289)
T 3e48_A 135 YT 136 (289)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 336
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=20.82 E-value=2.2e+02 Score=21.83 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=23.1
Q ss_pred CCCeEEEEEecC--------chhHHHHHHHHHHHccCCC-CceEEEEEc
Q 024934 58 TKLKIFIVFYSM--------YGHVEGLAKRMKKGVDGVD-GVEGLLYRV 97 (260)
Q Consensus 58 ~m~KVlIIy~S~--------~GnT~~lA~~i~~~l~~~~-G~ev~li~l 97 (260)
.++||.||..+. ..|...+++.+.+..++ . |+++..+.+
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~-~~G~~v~~~~i 51 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEK-LGGAKVVATAV 51 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTT-TTSEEEEEEEE
T ss_pred CCcEEEEEEECCcccCCCCccCcHHHHHHHHHhcccc-CCCcEEeEEEE
Confidence 467888887542 23445566665554444 4 787765544
No 337
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=20.74 E-value=1.3e+02 Score=29.28 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=20.1
Q ss_pred CCeEEEE-EecCchhHHHHHHHHHHHccCCCCceEEEEEcC
Q 024934 59 KLKIFIV-FYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVP 98 (260)
Q Consensus 59 m~KVlII-y~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~ 98 (260)
..+|+|| |+|.+ ++.+++. +++ .|+.++++...
T Consensus 29 ~~~I~VLDfg~q~--~~liar~----lre-~Gv~~~ivp~~ 62 (697)
T 2vxo_A 29 EGAVVILDAGAQY--GKVIDRR----VRE-LFVQSEIFPLE 62 (697)
T ss_dssp CCCEEEEEEC--C--HHHHHHH----HHH-TTCCEEEEETT
T ss_pred CCEEEEEECCCch--HHHHHHH----HHH-CCCEEEEEECC
Confidence 4579888 67755 3444444 445 57888888764
No 338
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=20.65 E-value=1e+02 Score=24.87 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
..+||+|+-+ .|+-..+. +.|++ .|+++.++.. .+++.++|+|||.-
T Consensus 22 ~~~~I~il~~--~~~~~~~~----~~l~~-~G~~~~~~~~-------------------------~~~l~~~Dglil~G 68 (219)
T 1q7r_A 22 SNMKIGVLGL--QGAVREHV----RAIEA-CGAEAVIVKK-------------------------SEQLEGLDGLVLPG 68 (219)
T ss_dssp CCCEEEEESC--GGGCHHHH----HHHHH-TTCEEEEECS-------------------------GGGGTTCSEEEECC
T ss_pred CCCEEEEEeC--CCCcHHHH----HHHHH-CCCEEEEECC-------------------------HHHHhhCCEEEECC
Confidence 3578998843 33322233 34444 5777776543 12356899999954
No 339
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=20.62 E-value=1.2e+02 Score=26.48 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCC
Q 024934 58 TKLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPET 100 (260)
Q Consensus 58 ~m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~ 100 (260)
.+++|+||-+.. ++..+++.+++ .|+++.+++-...
T Consensus 11 ~~~~IlIlG~G~------lg~~la~aa~~-lG~~viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQ------LGKMMAQSAQK-MGYKVVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESCTT
T ss_pred CCCEEEEECCCH------HHHHHHHHHHH-CCCEEEEEECCCC
Confidence 356777765332 34555566666 7899988886543
No 340
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=20.61 E-value=2.4e+02 Score=21.14 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=29.2
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|++.+... ....++++.++++=
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 136 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH---LLANDIPRILVGNK 136 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH---CCCSCCCEEEEEEC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 3467899999988766543333456666655321 12356777676664
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=20.56 E-value=2.6e+02 Score=20.53 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=29.2
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++||..-.-...-...++.|++.+... ....++++.++.+=
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 132 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRV---KEDENVPFLLVGNK 132 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH---HCCTTCCEEEEEEC
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 4578999999987665443334556666655321 12346787776663
No 342
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=20.56 E-value=3.6e+02 Score=22.30 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=12.7
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccC
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDG 86 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~ 86 (260)
|+||+|+=+ |+ |.+.+.+.+.+
T Consensus 3 MmkI~ViGa---Gr---MG~~i~~~l~~ 24 (243)
T 3qy9_A 3 SMKILLIGY---GA---MNQRVARLAEE 24 (243)
T ss_dssp CCEEEEECC---SH---HHHHHHHHHHH
T ss_pred ceEEEEECc---CH---HHHHHHHHHHh
Confidence 789888654 54 44444444444
No 343
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.55 E-value=2.4e+02 Score=20.99 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCc-hhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEc
Q 024934 58 TKLKIFIVFYSMY-GHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGF 136 (260)
Q Consensus 58 ~m~KVlIIy~S~~-GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~Gs 136 (260)
+..+|.||=.|.. |+ |...+.+.+.+ .|.+ ++.+.... ....+. .|. +++.++ ....|.+++..
T Consensus 13 ~p~~IavIGaS~~~g~---~G~~~~~~L~~-~G~~--V~~vnp~~-~~i~G~-~~~---~s~~el----~~~vDlvii~v 77 (138)
T 1y81_A 13 EFRKIALVGASKNPAK---YGNIILKDLLS-KGFE--VLPVNPNY-DEIEGL-KCY---RSVREL----PKDVDVIVFVV 77 (138)
T ss_dssp -CCEEEEETCCSCTTS---HHHHHHHHHHH-TTCE--EEEECTTC-SEETTE-ECB---SSGGGS----CTTCCEEEECS
T ss_pred CCCeEEEEeecCCCCC---HHHHHHHHHHH-CCCE--EEEeCCCC-CeECCe-eec---CCHHHh----CCCCCEEEEEe
Confidence 4678888877753 43 33333333444 4665 55544321 111110 111 122222 23689999999
Q ss_pred cccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecC
Q 024934 137 PTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPI 202 (260)
Q Consensus 137 PtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~ 202 (260)
|. ......++.+.. .|... ++...++. ...+.+.....|+.+++.
T Consensus 78 p~------~~v~~v~~~~~~-------~g~~~-i~~~~~~~-------~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 78 PP------KVGLQVAKEAVE-------AGFKK-LWFQPGAE-------SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp CH------HHHHHHHHHHHH-------TTCCE-EEECTTSC-------CHHHHHHHHHHTCEEECS
T ss_pred CH------HHHHHHHHHHHH-------cCCCE-EEEcCccH-------HHHHHHHHHHCCCEEEcC
Confidence 83 333444444321 23444 33333321 145667778889999974
No 344
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=20.52 E-value=3.3e+02 Score=23.58 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=50.1
Q ss_pred CCCeEEEEEecC-chhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhh--hhcCEEEE
Q 024934 58 TKLKIFIVFYSM-YGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADL--VEADGFLF 134 (260)
Q Consensus 58 ~m~KVlIIy~S~-~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l--~~AD~II~ 134 (260)
.-+||.|||... +| ..+++.+.+.+++ .|+++.....-.. ++..+ ..+| ..+|+||+
T Consensus 153 g~~~v~ii~~~~~~g--~~~~~~~~~~~~~-~g~~v~~~~~~~~----------------d~~~~-l~~i~~~~~~vii~ 212 (433)
T 4f11_A 153 QWKRVGTLTQDVQRF--SEVRNDLTGVLYG-EDIEISDTESFSN----------------DPCTS-VKKLKGNDVRIILG 212 (433)
T ss_dssp TCCEEEEEEESSHHH--HHHHHHHHHHSSS-SSCEEEEEEEESS----------------CCHHH-HHHHHHTTCCEEEE
T ss_pred CCcEEEEEEecchhh--HHHHHHHHHHHHH-cCceEEEEeccCc----------------CHHHH-HHHHhhCCCeEEEE
Confidence 467899988653 34 4688999999998 7887754332111 22222 3444 46788887
Q ss_pred EccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEeeC
Q 024934 135 GFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSTG 175 (260)
Q Consensus 135 GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~G 175 (260)
... ......|+.....+ .+.++...++++.+
T Consensus 213 ~~~------~~~~~~~~~~a~~~----g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 213 QFD------QNMAAKVFCCAYEE----NMYGSKYQWIIPGW 243 (433)
T ss_dssp ECC------HHHHHHHHHHHHHT----TCCSTTCEEEEESC
T ss_pred eCc------HHHHHHHHHHHHHc----CCCCCCeEEEEcCc
Confidence 653 23445555554322 34554223455544
No 345
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=20.47 E-value=2.4e+02 Score=26.07 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=52.6
Q ss_pred HHHHHHHHccCCCCceEEEEEcCCCCcHHHhh-cCC-CCC-CCCCcccccHhhhhhcCEEEEEccccCCCchHHHHHHHH
Q 024934 76 LAKRMKKGVDGVDGVEGLLYRVPETLTREALD-HMK-VPP-RDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 76 lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~-~~~-~~~-~~dd~~~i~~~~l~~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
|...++..+.+ .|.+|.+++........... ... ... ...+..++ .+.+..+|.||+..|.. ..++..++
T Consensus 21 MG~~lA~~La~-~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~-v~~l~~aDvVil~Vp~~-----~~v~~vl~ 93 (497)
T 2p4q_A 21 MGQNLILNAAD-HGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDF-ISKLKRPRKVMLLVKAG-----APVDALIN 93 (497)
T ss_dssp HHHHHHHHHHH-TTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHH-HHTSCSSCEEEECCCSS-----HHHHHHHH
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHH-HhcCCCCCEEEEEcCCh-----HHHHHHHH
Confidence 44444445545 67888888765432222211 100 000 00111111 12222399999999963 24677776
Q ss_pred HhcccccCCCCC-CCcEEEEEeeCCCCCChHHHHHHHHHHHHhcCcEEecCc
Q 024934 153 STGMLWKEGKLV-GKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIG 203 (260)
Q Consensus 153 ~~~~l~~~~~l~-gK~~~if~s~G~~~Gg~e~~l~~l~~~l~~~gm~vV~~~ 203 (260)
.+.. .+. |+ +++..++ +... ....+...+...|+.+++.+
T Consensus 94 ~l~~-----~l~~g~---iIId~s~--~~~~-~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 94 QIVP-----LLEKGD---IIIDGGN--SHFP-DSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp HHGG-----GCCTTC---EEEECSC--CCHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHH-----hCCCCC---EEEECCC--CChh-HHHHHHHHHHHcCCceeCCC
Confidence 6542 232 33 3344332 2222 23445566666787777544
No 346
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=20.45 E-value=91 Score=27.58 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=36.0
Q ss_pred CCeEEEEEecCchhHHHHHHHHHHHccCCCCceEEEEEcCCCCcHHHhhcCCCCCCCCCcccccHhhhhhcCEEEEEcc
Q 024934 59 KLKIFIVFYSMYGHVEGLAKRMKKGVDGVDGVEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFP 137 (260)
Q Consensus 59 m~KVlIIy~S~~GnT~~lA~~i~~~l~~~~G~ev~li~l~~~~~~~~~~~~~~~~~~dd~~~i~~~~l~~AD~II~GsP 137 (260)
-.++.||+.|..| ..+|+.|++.+.. .+.++..+. .+.+...+.+.++|+|||...
T Consensus 8 ~r~~Aiia~T~~G--~~lA~rl~~~l~~-~~~~~~~~~--------------------~~~~~~~~~f~~~d~iIfI~A 63 (336)
T 3eeq_A 8 WRGICIISASEDA--FSAGETIKEKLKS-FEIPVVHYR--------------------YKDAEIETIWKCYDAIVFVMA 63 (336)
T ss_dssp TTCEEEEECSHHH--HHHHHHHHHHHHH-TTCCEEEEE--------------------GGGCCHHHHTTTCSEEEEESC
T ss_pred ccceEEEEEChHH--HHHHHHHHHhcCc-CCceEEecC--------------------CHHHHHHHHhcCCCeEEEEeC
Confidence 3478899877766 5688888888863 344443222 111222466789999998765
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=20.30 E-value=2.4e+02 Score=20.12 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=29.0
Q ss_pred hhhhhcCEEEEEccccCCCchHHHHHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 124 ADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 124 ~~l~~AD~II~GsPtY~g~~~~~mK~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
.-+..+|++|+..-.-...-...++.|++.+... ....++|+.++++=
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 118 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRV---KEDENVPFLLVGNK 118 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH---HCCTTSCEEEEEEC
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEEC
Confidence 4578899999987655433334456666655321 12347887777663
No 348
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=20.25 E-value=2e+02 Score=24.40 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=16.1
Q ss_pred hcCEEEEEccccCCCchHHHHHHHH
Q 024934 128 EADGFLFGFPTRYGCMAAQMKAFFD 152 (260)
Q Consensus 128 ~AD~II~GsPtY~g~~~~~mK~flD 152 (260)
+.|+|++.+|.... ....+..++
T Consensus 66 ~vD~V~i~tp~~~H--~~~~~~al~ 88 (334)
T 3ohs_X 66 NVEVAYVGTQHPQH--KAAVMLCLA 88 (334)
T ss_dssp TCCEEEECCCGGGH--HHHHHHHHH
T ss_pred CCCEEEECCCcHHH--HHHHHHHHh
Confidence 58999999998753 334455554
No 349
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=20.09 E-value=2.2e+02 Score=21.47 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=26.8
Q ss_pred HhhhhhcCEEEEEccccCCCchHHH-HHHHHHhcccccCCCCCCCcEEEEEee
Q 024934 123 AADLVEADGFLFGFPTRYGCMAAQM-KAFFDSTGMLWKEGKLVGKPAGFFVST 174 (260)
Q Consensus 123 ~~~l~~AD~II~GsPtY~g~~~~~m-K~flD~~~~l~~~~~l~gK~~~if~s~ 174 (260)
..-+..+|++||..-.-...-...+ ..|+..+.. ...+.++.++++-
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~~p~ilv~nK 136 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-----YIDTAKTVLVGLK 136 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HCTTSEEEEEEEC
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 3456799999997665443222232 345544432 2356787777663
Done!