Query 024935
Match_columns 260
No_of_seqs 303 out of 2233
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.5E-33 7.5E-38 226.2 20.5 152 5-175 106-264 (346)
2 KOG0105 Alternative splicing f 100.0 1.4E-30 3.1E-35 183.6 20.8 183 1-188 1-192 (241)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-30 3.3E-35 215.4 19.6 152 5-175 2-160 (352)
4 TIGR01645 half-pint poly-U bin 100.0 1.8E-30 3.9E-35 221.0 19.5 165 5-177 106-277 (612)
5 KOG0148 Apoptosis-promoting RN 100.0 1.3E-30 2.9E-35 194.2 14.2 171 8-183 64-237 (321)
6 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-29 2.6E-34 216.9 20.3 169 4-180 87-262 (457)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.9E-29 8.4E-34 207.1 22.1 175 5-179 88-344 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1E-28 2.2E-33 210.9 21.2 160 5-174 1-162 (481)
9 KOG0109 RNA-binding protein LA 100.0 1.5E-29 3.2E-34 190.5 11.0 147 7-183 3-149 (346)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-28 3.8E-33 214.4 19.3 152 8-176 2-159 (562)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.3E-28 1.6E-32 205.7 20.9 170 4-175 273-465 (481)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-27 3.8E-32 206.3 20.7 172 3-178 172-369 (509)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.7E-27 5.8E-32 205.1 20.6 174 5-178 294-496 (509)
14 TIGR01648 hnRNP-R-Q heterogene 100.0 4.2E-27 9.1E-32 200.2 20.3 170 6-179 58-302 (578)
15 KOG0145 RNA-binding protein EL 100.0 7.1E-28 1.5E-32 178.9 13.5 160 5-185 40-206 (360)
16 KOG0117 Heterogeneous nuclear 100.0 1.9E-27 4.1E-32 188.9 15.8 174 6-183 83-330 (506)
17 KOG0144 RNA-binding protein CU 100.0 1.5E-27 3.3E-32 188.6 12.5 166 5-190 33-208 (510)
18 TIGR01628 PABP-1234 polyadenyl 99.9 9.1E-27 2E-31 203.6 17.1 176 5-181 177-361 (562)
19 KOG0131 Splicing factor 3b, su 99.9 1.4E-26 2.9E-31 163.2 13.0 165 5-187 8-180 (203)
20 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-25 2.8E-30 192.1 21.2 176 6-181 186-445 (457)
21 KOG0127 Nucleolar protein fibr 99.9 2E-25 4.4E-30 181.4 15.3 177 7-183 6-195 (678)
22 KOG0145 RNA-binding protein EL 99.9 5.6E-25 1.2E-29 163.6 15.2 171 6-176 127-350 (360)
23 KOG0127 Nucleolar protein fibr 99.9 1.3E-24 2.7E-29 176.8 18.6 178 5-182 116-376 (678)
24 KOG0124 Polypyrimidine tract-b 99.9 6.9E-25 1.5E-29 170.5 8.2 163 7-177 114-283 (544)
25 KOG0106 Alternative splicing f 99.9 3.1E-24 6.6E-29 159.0 11.0 163 7-178 2-165 (216)
26 KOG0123 Polyadenylate-binding 99.9 6.4E-23 1.4E-27 167.4 15.7 141 7-176 2-145 (369)
27 KOG0107 Alternative splicing f 99.9 3.4E-22 7.4E-27 140.2 14.4 77 107-184 9-85 (195)
28 KOG0110 RNA-binding protein (R 99.9 2.3E-22 4.9E-27 168.6 12.6 159 8-176 517-685 (725)
29 KOG0107 Alternative splicing f 99.9 2.5E-21 5.5E-26 135.9 15.7 78 5-84 9-86 (195)
30 KOG4206 Spliceosomal protein s 99.9 4.7E-21 1E-25 140.6 15.8 168 4-172 7-209 (221)
31 KOG0146 RNA-binding protein ET 99.9 2.6E-21 5.6E-26 144.7 12.1 177 5-181 18-362 (371)
32 KOG0144 RNA-binding protein CU 99.9 5.9E-21 1.3E-25 151.5 13.9 179 6-184 124-504 (510)
33 TIGR01645 half-pint poly-U bin 99.9 9.2E-20 2E-24 155.9 20.4 78 5-82 203-283 (612)
34 KOG1457 RNA binding protein (c 99.9 2.2E-20 4.8E-25 136.1 14.0 168 6-173 34-275 (284)
35 KOG0147 Transcriptional coacti 99.9 8.4E-21 1.8E-25 155.2 13.0 176 5-181 277-525 (549)
36 KOG0148 Apoptosis-promoting RN 99.9 6E-21 1.3E-25 142.9 10.5 132 1-178 1-136 (321)
37 KOG0123 Polyadenylate-binding 99.8 2.1E-20 4.4E-25 152.7 14.1 160 3-174 73-236 (369)
38 KOG4207 Predicted splicing fac 99.8 4E-20 8.7E-25 133.2 12.5 80 5-84 12-94 (256)
39 KOG4676 Splicing factor, argin 99.8 5.9E-21 1.3E-25 149.7 7.4 164 6-171 7-213 (479)
40 KOG0147 Transcriptional coacti 99.8 4.9E-21 1.1E-25 156.5 6.4 171 4-180 177-354 (549)
41 KOG0113 U1 small nuclear ribon 99.8 2.4E-19 5.2E-24 136.2 14.6 82 3-84 98-182 (335)
42 PLN03134 glycine-rich RNA-bind 99.8 6.9E-20 1.5E-24 130.8 10.9 81 5-85 33-116 (144)
43 KOG4205 RNA-binding protein mu 99.8 8.8E-20 1.9E-24 144.0 11.0 165 2-181 2-173 (311)
44 KOG0121 Nuclear cap-binding pr 99.8 2E-19 4.3E-24 119.8 7.2 79 4-82 34-115 (153)
45 KOG1548 Transcription elongati 99.8 1.4E-17 2.9E-22 129.2 17.1 179 5-183 133-351 (382)
46 KOG1190 Polypyrimidine tract-b 99.8 1.2E-17 2.7E-22 132.0 15.7 167 6-174 297-480 (492)
47 KOG4207 Predicted splicing fac 99.8 1.4E-17 2.9E-22 120.3 12.6 78 103-180 8-89 (256)
48 KOG4211 Splicing factor hnRNP- 99.8 4.4E-17 9.5E-22 132.0 15.4 157 6-173 10-171 (510)
49 KOG4212 RNA-binding protein hn 99.7 1.5E-16 3.2E-21 127.0 17.1 169 6-174 44-284 (608)
50 PLN03120 nucleic acid binding 99.7 1.3E-17 2.8E-22 127.2 10.7 79 6-85 4-82 (260)
51 KOG0110 RNA-binding protein (R 99.7 2.7E-17 5.9E-22 138.4 13.6 176 4-182 383-596 (725)
52 TIGR01648 hnRNP-R-Q heterogene 99.7 2.7E-17 5.9E-22 140.6 11.8 127 5-136 232-369 (578)
53 PF00076 RRM_1: RNA recognitio 99.7 9.6E-18 2.1E-22 105.7 6.8 68 9-76 1-70 (70)
54 KOG0120 Splicing factor U2AF, 99.7 9.2E-17 2E-21 133.1 11.9 176 5-183 288-492 (500)
55 KOG0114 Predicted RNA-binding 99.7 8.1E-17 1.8E-21 103.3 8.6 78 5-82 17-94 (124)
56 PLN03121 nucleic acid binding 99.7 1.7E-16 3.7E-21 119.1 10.8 80 5-85 4-83 (243)
57 KOG0122 Translation initiation 99.7 1.3E-16 2.8E-21 118.2 9.3 79 4-82 187-268 (270)
58 COG0724 RNA-binding proteins ( 99.7 1.2E-15 2.6E-20 122.6 14.2 140 6-145 115-262 (306)
59 TIGR01659 sex-lethal sex-letha 99.7 1.1E-15 2.3E-20 124.5 11.8 82 5-86 192-278 (346)
60 PF14259 RRM_6: RNA recognitio 99.7 2.5E-16 5.5E-21 99.1 6.3 68 9-76 1-70 (70)
61 KOG1190 Polypyrimidine tract-b 99.7 3.8E-16 8.2E-21 123.7 8.3 176 3-181 25-223 (492)
62 KOG0126 Predicted RNA-binding 99.6 1.7E-17 3.6E-22 117.4 0.3 83 4-86 33-118 (219)
63 KOG0130 RNA-binding protein RB 99.6 4.8E-16 1E-20 104.7 6.5 79 6-84 72-153 (170)
64 KOG0149 Predicted RNA-binding 99.6 3E-15 6.5E-20 110.6 10.0 77 7-84 13-92 (247)
65 KOG0125 Ataxin 2-binding prote 99.6 1.4E-15 3.1E-20 117.3 7.6 80 4-83 94-174 (376)
66 KOG0124 Polypyrimidine tract-b 99.6 1.7E-14 3.7E-19 113.0 13.6 76 6-81 210-288 (544)
67 PLN03213 repressor of silencin 99.6 2.6E-15 5.7E-20 121.8 9.2 77 4-81 8-86 (759)
68 KOG0415 Predicted peptidyl pro 99.6 3.3E-16 7.1E-21 121.9 3.8 81 4-84 237-320 (479)
69 smart00362 RRM_2 RNA recogniti 99.6 5.6E-15 1.2E-19 93.2 8.5 70 8-77 1-71 (72)
70 PLN03134 glycine-rich RNA-bind 99.6 5.8E-14 1.3E-18 100.4 14.1 74 104-177 30-107 (144)
71 KOG0113 U1 small nuclear ribon 99.6 6.5E-14 1.4E-18 106.9 14.3 76 103-178 96-175 (335)
72 KOG1456 Heterogeneous nuclear 99.6 1.2E-13 2.6E-18 108.5 15.7 173 4-178 285-479 (494)
73 KOG0111 Cyclophilin-type pepti 99.6 3.5E-15 7.6E-20 108.9 5.6 82 5-86 9-93 (298)
74 KOG4212 RNA-binding protein hn 99.6 2.1E-13 4.6E-18 109.2 14.9 75 5-79 214-290 (608)
75 PF13893 RRM_5: RNA recognitio 99.5 4E-14 8.8E-19 84.7 7.0 56 23-80 1-56 (56)
76 smart00360 RRM RNA recognition 99.5 5.2E-14 1.1E-18 88.4 7.9 67 11-77 1-70 (71)
77 cd00590 RRM RRM (RNA recogniti 99.5 9.1E-14 2E-18 88.1 8.9 72 8-79 1-74 (74)
78 PF00076 RRM_1: RNA recognitio 99.5 6.7E-14 1.5E-18 88.0 8.0 66 111-176 1-69 (70)
79 KOG0108 mRNA cleavage and poly 99.5 1.6E-13 3.4E-18 113.5 9.3 78 7-84 19-99 (435)
80 KOG0129 Predicted RNA-binding 99.4 3E-12 6.6E-17 104.9 13.7 165 5-172 258-443 (520)
81 KOG0109 RNA-binding protein LA 99.4 1.8E-13 3.8E-18 104.2 6.1 76 4-84 76-151 (346)
82 KOG0117 Heterogeneous nuclear 99.4 3E-13 6.6E-18 108.6 7.2 76 7-87 260-335 (506)
83 KOG0132 RNA polymerase II C-te 99.4 5.8E-13 1.3E-17 113.7 8.6 78 5-85 420-497 (894)
84 PLN03120 nucleic acid binding 99.4 2.1E-12 4.6E-17 98.9 10.1 72 108-180 4-76 (260)
85 KOG0130 RNA-binding protein RB 99.4 2.8E-12 6.1E-17 86.7 8.7 81 106-186 70-154 (170)
86 PF14259 RRM_6: RNA recognitio 99.4 1.8E-12 3.9E-17 81.4 7.1 65 111-175 1-68 (70)
87 smart00361 RRM_1 RNA recogniti 99.4 1.9E-12 4.1E-17 81.0 7.0 58 20-77 2-69 (70)
88 KOG0105 Alternative splicing f 99.4 7.5E-12 1.6E-16 89.3 10.2 79 107-189 5-84 (241)
89 KOG1456 Heterogeneous nuclear 99.4 1.6E-11 3.4E-16 96.8 12.4 160 5-180 30-193 (494)
90 KOG0120 Splicing factor U2AF, 99.3 6.2E-12 1.4E-16 104.8 9.9 171 4-178 173-363 (500)
91 KOG0125 Ataxin 2-binding prote 99.3 1.1E-11 2.4E-16 96.1 10.3 72 105-176 93-166 (376)
92 KOG0121 Nuclear cap-binding pr 99.3 4.6E-12 1E-16 84.9 6.9 72 106-177 34-109 (153)
93 KOG1365 RNA-binding protein Fu 99.3 9.6E-12 2.1E-16 98.3 8.3 168 7-175 162-353 (508)
94 PLN03213 repressor of silencin 99.3 1.2E-11 2.6E-16 100.9 8.9 70 107-176 9-80 (759)
95 KOG4454 RNA binding protein (R 99.3 7.8E-13 1.7E-17 96.8 1.3 140 5-173 8-152 (267)
96 KOG0114 Predicted RNA-binding 99.3 3.3E-11 7.1E-16 77.7 8.4 73 104-176 14-87 (124)
97 smart00362 RRM_2 RNA recogniti 99.3 3.5E-11 7.6E-16 75.5 8.5 66 110-175 1-68 (72)
98 PLN03121 nucleic acid binding 99.3 3.5E-11 7.5E-16 90.8 9.6 69 107-176 4-73 (243)
99 KOG0112 Large RNA-binding prot 99.3 3.7E-12 8.1E-17 110.5 4.9 151 4-177 370-522 (975)
100 KOG0122 Translation initiation 99.3 6.9E-11 1.5E-15 88.2 10.8 80 104-187 185-268 (270)
101 KOG0146 RNA-binding protein ET 99.3 8E-12 1.7E-16 94.2 5.1 81 4-84 283-366 (371)
102 KOG4208 Nucleolar RNA-binding 99.2 3.2E-11 7E-16 87.8 7.3 79 5-83 48-130 (214)
103 KOG0153 Predicted RNA-binding 99.2 3.3E-11 7.1E-16 94.2 7.4 77 3-82 225-302 (377)
104 KOG0131 Splicing factor 3b, su 99.2 4.6E-11 1E-15 85.2 6.1 80 5-84 95-178 (203)
105 smart00360 RRM RNA recognition 99.2 1.5E-10 3.3E-15 72.3 8.0 63 113-175 1-67 (71)
106 cd00590 RRM RRM (RNA recogniti 99.2 3E-10 6.5E-15 71.6 8.7 67 110-176 1-70 (74)
107 KOG0149 Predicted RNA-binding 99.1 1.8E-10 3.9E-15 85.6 7.4 77 106-183 10-90 (247)
108 KOG0415 Predicted peptidyl pro 99.1 2.6E-10 5.7E-15 89.5 7.6 74 104-177 235-312 (479)
109 PF13893 RRM_5: RNA recognitio 99.1 5.5E-10 1.2E-14 66.6 6.8 53 125-178 1-53 (56)
110 KOG4211 Splicing factor hnRNP- 99.1 3.7E-09 8.1E-14 86.6 13.4 167 5-174 102-348 (510)
111 KOG0533 RRM motif-containing p 99.1 7.8E-10 1.7E-14 84.6 8.5 79 6-84 83-163 (243)
112 KOG4661 Hsp27-ERE-TATA-binding 99.1 4E-10 8.7E-15 93.7 7.2 79 6-84 405-486 (940)
113 KOG4660 Protein Mei2, essentia 99.0 2.3E-10 5E-15 94.9 4.4 165 3-173 72-239 (549)
114 KOG0111 Cyclophilin-type pepti 99.0 3.7E-10 8.1E-15 82.9 4.9 73 107-179 9-85 (298)
115 KOG0128 RNA-binding protein SA 99.0 3.4E-11 7.4E-16 104.2 -1.2 137 4-176 665-807 (881)
116 KOG2193 IGF-II mRNA-binding pr 99.0 1.3E-10 2.7E-15 93.2 1.8 145 7-177 2-150 (584)
117 KOG0126 Predicted RNA-binding 99.0 5.9E-11 1.3E-15 84.5 -0.4 74 108-181 35-112 (219)
118 KOG0151 Predicted splicing reg 99.0 9.9E-10 2.1E-14 93.5 6.8 77 6-82 174-256 (877)
119 KOG4205 RNA-binding protein mu 99.0 1E-09 2.3E-14 87.3 6.0 82 5-87 96-180 (311)
120 smart00361 RRM_1 RNA recogniti 99.0 3.4E-09 7.4E-14 66.2 6.7 56 122-177 2-68 (70)
121 PF04059 RRM_2: RNA recognitio 98.9 8.2E-09 1.8E-13 67.7 8.4 76 7-82 2-86 (97)
122 KOG0116 RasGAP SH3 binding pro 98.9 2.3E-09 5E-14 88.6 7.2 74 7-81 289-365 (419)
123 KOG4209 Splicing factor RNPS1, 98.9 2.4E-09 5.2E-14 82.1 5.7 79 4-83 99-180 (231)
124 KOG0108 mRNA cleavage and poly 98.9 4.3E-09 9.2E-14 87.5 7.2 72 109-180 19-94 (435)
125 COG0724 RNA-binding proteins ( 98.9 1E-08 2.2E-13 82.2 9.0 73 108-180 115-191 (306)
126 KOG4210 Nuclear localization s 98.9 5.3E-09 1.2E-13 83.0 6.6 158 5-173 87-253 (285)
127 PF11608 Limkain-b1: Limkain b 98.8 3.2E-08 6.8E-13 61.7 7.5 71 7-84 3-78 (90)
128 KOG1365 RNA-binding protein Fu 98.7 2.8E-07 6E-12 73.6 11.9 158 4-165 58-225 (508)
129 KOG4676 Splicing factor, argin 98.7 5.4E-09 1.2E-13 83.2 2.4 63 7-71 152-214 (479)
130 KOG1457 RNA binding protein (c 98.7 2.5E-08 5.4E-13 73.7 4.0 66 4-70 208-273 (284)
131 KOG0226 RNA-binding proteins [ 98.6 9.9E-08 2.2E-12 72.0 7.0 156 9-177 99-263 (290)
132 KOG4206 Spliceosomal protein s 98.6 1.9E-07 4.1E-12 69.5 8.0 70 108-177 9-83 (221)
133 KOG0226 RNA-binding proteins [ 98.6 4.5E-08 9.7E-13 73.8 4.7 76 5-80 189-267 (290)
134 KOG4661 Hsp27-ERE-TATA-binding 98.6 4.8E-07 1E-11 75.9 9.5 72 106-177 403-478 (940)
135 KOG4307 RNA binding protein RB 98.5 5.4E-07 1.2E-11 77.2 9.5 167 6-174 311-504 (944)
136 KOG0533 RRM motif-containing p 98.5 3.9E-07 8.4E-12 70.0 7.7 74 107-180 82-158 (243)
137 KOG0116 RasGAP SH3 binding pro 98.5 2.1E-06 4.6E-11 71.3 12.4 78 106-188 286-367 (419)
138 KOG4208 Nucleolar RNA-binding 98.5 5.8E-07 1.3E-11 65.9 7.5 81 104-184 45-130 (214)
139 KOG0153 Predicted RNA-binding 98.5 5.4E-07 1.2E-11 71.0 7.8 80 102-187 222-302 (377)
140 KOG0132 RNA polymerase II C-te 98.5 3.6E-07 7.7E-12 79.1 7.3 74 107-182 420-493 (894)
141 KOG2202 U2 snRNP splicing fact 98.5 3.8E-07 8.2E-12 69.1 6.4 61 21-81 83-146 (260)
142 KOG0106 Alternative splicing f 98.5 1.2E-07 2.5E-12 71.2 3.4 69 4-77 97-165 (216)
143 PF08777 RRM_3: RNA binding mo 98.4 7.7E-07 1.7E-11 59.9 5.1 69 7-78 2-75 (105)
144 KOG4660 Protein Mei2, essentia 98.3 8.1E-07 1.8E-11 74.3 5.5 71 106-177 73-143 (549)
145 KOG1995 Conserved Zn-finger pr 98.3 5.9E-07 1.3E-11 71.3 4.3 80 5-84 65-155 (351)
146 KOG2416 Acinus (induces apopto 98.3 8.2E-07 1.8E-11 74.8 4.6 75 4-81 442-520 (718)
147 KOG4454 RNA binding protein (R 98.2 7E-07 1.5E-11 66.0 2.6 71 106-176 7-79 (267)
148 KOG0151 Predicted splicing reg 98.2 4.1E-06 8.9E-11 72.1 7.1 72 103-174 169-247 (877)
149 PF08777 RRM_3: RNA binding mo 98.2 2.9E-06 6.2E-11 57.1 5.0 59 109-169 2-60 (105)
150 PF14605 Nup35_RRM_2: Nup53/35 98.2 6.2E-06 1.3E-10 48.0 5.1 53 6-62 1-53 (53)
151 KOG1548 Transcription elongati 98.2 1.3E-05 2.8E-10 63.4 8.4 79 104-186 130-219 (382)
152 KOG3152 TBP-binding protein, a 98.1 2.1E-06 4.6E-11 65.0 2.8 70 5-74 73-157 (278)
153 KOG4849 mRNA cleavage factor I 98.1 3.6E-06 7.9E-11 66.5 4.2 75 7-81 81-160 (498)
154 PF04059 RRM_2: RNA recognitio 98.1 4.4E-05 9.6E-10 50.2 8.5 66 109-174 2-73 (97)
155 PF05172 Nup35_RRM: Nup53/35/4 98.1 2.7E-05 5.9E-10 51.6 7.1 74 5-80 5-89 (100)
156 COG5175 MOT2 Transcriptional r 98.0 1.6E-05 3.5E-10 62.7 6.9 75 7-81 115-201 (480)
157 KOG1855 Predicted RNA-binding 98.0 2.9E-06 6.4E-11 68.8 2.8 67 4-70 229-311 (484)
158 KOG4210 Nuclear localization s 98.0 5.8E-06 1.3E-10 65.8 3.6 79 4-83 182-264 (285)
159 KOG4307 RNA binding protein RB 98.0 4.7E-05 1E-09 65.7 8.9 76 4-79 864-943 (944)
160 PF11608 Limkain-b1: Limkain b 97.9 6.7E-05 1.5E-09 47.1 6.2 62 109-176 3-69 (90)
161 KOG4209 Splicing factor RNPS1, 97.9 3.1E-05 6.7E-10 59.7 5.5 70 107-177 100-173 (231)
162 KOG2314 Translation initiation 97.9 4.8E-05 1E-09 64.1 6.7 76 6-81 58-142 (698)
163 PF08952 DUF1866: Domain of un 97.8 0.00014 3E-09 51.1 7.6 75 4-84 25-108 (146)
164 KOG0129 Predicted RNA-binding 97.8 8.7E-05 1.9E-09 62.0 7.7 60 4-63 368-431 (520)
165 KOG0115 RNA-binding protein p5 97.8 0.00011 2.5E-09 55.9 6.9 101 57-183 6-109 (275)
166 KOG2202 U2 snRNP splicing fact 97.8 7E-05 1.5E-09 57.1 5.7 59 123-181 83-145 (260)
167 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.1E-09 41.7 4.8 52 109-163 2-53 (53)
168 KOG0112 Large RNA-binding prot 97.6 0.00016 3.5E-09 64.2 6.0 81 4-87 453-535 (975)
169 PF08675 RNA_bind: RNA binding 97.5 0.00043 9.3E-09 43.5 5.9 53 8-66 11-63 (87)
170 COG5175 MOT2 Transcriptional r 97.5 0.00033 7.1E-09 55.6 6.2 74 106-179 112-198 (480)
171 KOG3152 TBP-binding protein, a 97.5 8.7E-05 1.9E-09 56.5 2.7 68 108-175 74-157 (278)
172 KOG1996 mRNA splicing factor [ 97.4 0.00055 1.2E-08 53.3 6.3 57 122-178 300-361 (378)
173 KOG1996 mRNA splicing factor [ 97.4 0.00059 1.3E-08 53.1 6.1 77 5-81 280-365 (378)
174 PF15023 DUF4523: Protein of u 97.4 0.0022 4.7E-08 44.7 8.2 73 4-81 84-160 (166)
175 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.002 4.3E-08 42.8 6.8 66 109-176 7-83 (100)
176 KOG2314 Translation initiation 97.2 0.0014 3E-08 55.6 7.0 68 108-175 58-134 (698)
177 KOG0128 RNA-binding protein SA 97.1 0.0006 1.3E-08 60.5 4.7 77 6-82 736-814 (881)
178 PF07576 BRAP2: BRCA1-associat 97.1 0.0043 9.3E-08 42.0 7.5 69 4-72 11-81 (110)
179 PF03880 DbpA: DbpA RNA bindin 97.0 0.0047 1E-07 38.7 6.6 66 8-80 2-74 (74)
180 KOG1995 Conserved Zn-finger pr 97.0 0.0014 2.9E-08 52.7 4.7 72 105-176 63-146 (351)
181 PF10309 DUF2414: Protein of u 96.9 0.01 2.2E-07 35.4 6.9 54 6-65 5-62 (62)
182 KOG2591 c-Mpl binding protein, 96.9 0.0039 8.5E-08 52.9 7.0 100 54-181 146-249 (684)
183 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.00089 1.9E-08 49.6 2.5 81 4-84 5-99 (176)
184 KOG1855 Predicted RNA-binding 96.8 0.0021 4.5E-08 52.8 4.5 66 104-169 227-309 (484)
185 KOG0804 Cytoplasmic Zn-finger 96.8 0.01 2.2E-07 49.3 8.3 68 5-72 73-142 (493)
186 PF10309 DUF2414: Protein of u 96.8 0.02 4.3E-07 34.2 7.4 54 109-166 6-62 (62)
187 KOG2135 Proteins containing th 96.8 0.001 2.3E-08 55.1 2.7 76 4-83 370-446 (526)
188 PF04847 Calcipressin: Calcipr 96.6 0.01 2.3E-07 44.1 7.0 61 19-82 8-70 (184)
189 KOG2591 c-Mpl binding protein, 96.5 0.0032 7E-08 53.4 4.3 72 4-79 173-248 (684)
190 KOG2253 U1 snRNP complex, subu 96.4 0.0022 4.8E-08 55.5 2.7 70 5-80 39-108 (668)
191 KOG0835 Cyclin L [General func 96.3 0.0079 1.7E-07 47.9 4.9 23 44-67 172-194 (367)
192 PF08675 RNA_bind: RNA binding 96.3 0.018 3.9E-07 36.4 5.3 55 110-168 10-64 (87)
193 KOG4285 Mitotic phosphoprotein 96.2 0.018 3.8E-07 45.4 6.3 68 9-81 200-268 (350)
194 PF08952 DUF1866: Domain of un 96.2 0.023 5E-07 40.2 6.2 56 123-183 51-106 (146)
195 KOG2068 MOT2 transcription fac 96.2 0.002 4.3E-08 51.4 1.0 75 7-81 78-161 (327)
196 KOG0115 RNA-binding protein p5 96.0 0.009 1.9E-07 45.9 3.8 74 7-80 32-111 (275)
197 KOG2888 Putative RNA binding p 95.5 0.0072 1.6E-07 48.0 1.5 12 122-133 226-237 (453)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.038 8.3E-07 41.0 5.0 75 107-181 6-90 (176)
199 KOG2416 Acinus (induces apopto 95.2 0.014 2.9E-07 50.2 2.5 66 105-172 441-507 (718)
200 PF11767 SET_assoc: Histone ly 95.2 0.1 2.2E-06 31.7 5.6 55 17-77 11-65 (66)
201 KOG4574 RNA-binding protein (c 95.1 0.018 3.9E-07 51.6 3.0 71 10-83 302-374 (1007)
202 KOG0835 Cyclin L [General func 95.1 0.051 1.1E-06 43.5 5.1 11 119-129 212-222 (367)
203 KOG2193 IGF-II mRNA-binding pr 95.0 0.001 2.3E-08 54.4 -4.4 78 5-82 79-156 (584)
204 KOG4849 mRNA cleavage factor I 95.0 0.03 6.5E-07 45.0 3.5 69 107-175 79-153 (498)
205 PF10567 Nab6_mRNP_bdg: RNA-re 94.7 0.27 5.9E-06 38.9 8.1 76 6-81 15-106 (309)
206 KOG2318 Uncharacterized conser 94.7 0.19 4.1E-06 43.4 7.7 81 3-83 171-308 (650)
207 PF07576 BRAP2: BRCA1-associat 94.6 0.52 1.1E-05 32.0 8.4 65 109-173 14-81 (110)
208 KOG4285 Mitotic phosphoprotein 94.4 0.15 3.2E-06 40.4 6.0 63 109-175 198-260 (350)
209 PF15023 DUF4523: Protein of u 94.3 0.24 5.2E-06 34.8 6.3 63 105-170 83-149 (166)
210 PF07292 NID: Nmi/IFP 35 domai 93.8 0.12 2.5E-06 33.4 3.8 72 48-129 1-73 (88)
211 KOG0804 Cytoplasmic Zn-finger 93.3 0.56 1.2E-05 39.4 7.7 66 108-173 74-142 (493)
212 PF14111 DUF4283: Domain of un 93.1 0.096 2.1E-06 37.8 2.9 120 9-144 18-141 (153)
213 KOG2253 U1 snRNP complex, subu 93.0 0.15 3.3E-06 44.7 4.4 68 104-176 36-103 (668)
214 KOG2068 MOT2 transcription fac 92.0 0.082 1.8E-06 42.5 1.4 67 109-175 78-154 (327)
215 KOG4019 Calcineurin-mediated s 91.9 1.3 2.9E-05 32.5 7.4 77 6-85 10-92 (193)
216 PF04847 Calcipressin: Calcipr 91.5 0.9 1.9E-05 34.0 6.4 59 121-181 8-68 (184)
217 KOG2135 Proteins containing th 91.2 0.17 3.7E-06 42.6 2.5 69 107-178 371-440 (526)
218 PF11767 SET_assoc: Histone ly 89.2 1.9 4.1E-05 26.2 5.3 50 119-173 11-60 (66)
219 PRK14548 50S ribosomal protein 87.8 2.8 6E-05 26.9 5.6 57 8-64 22-80 (84)
220 PF03880 DbpA: DbpA RNA bindin 87.4 4.7 0.0001 25.0 6.5 56 118-178 11-71 (74)
221 PF03468 XS: XS domain; Inter 85.8 0.64 1.4E-05 31.9 2.1 56 8-63 10-75 (116)
222 KOG4574 RNA-binding protein (c 84.3 0.6 1.3E-05 42.4 1.8 57 114-172 304-360 (1007)
223 KOG4483 Uncharacterized conser 82.6 2.7 5.8E-05 35.0 4.6 55 7-64 392-446 (528)
224 KOG2295 C2H2 Zn-finger protein 81.6 0.33 7.1E-06 41.8 -0.9 69 5-73 230-301 (648)
225 KOG3580 Tight junction protein 81.3 11 0.00023 33.5 7.9 40 104-143 57-97 (1027)
226 KOG1295 Nonsense-mediated deca 80.6 1.6 3.4E-05 36.1 2.7 67 5-71 6-78 (376)
227 KOG4410 5-formyltetrahydrofola 78.3 3.8 8.3E-05 32.5 4.0 48 7-56 331-378 (396)
228 KOG2146 Splicing coactivator S 77.9 23 0.00051 28.2 8.1 31 49-79 56-87 (354)
229 TIGR03636 L23_arch archaeal ri 75.8 14 0.0003 23.3 5.4 56 8-63 15-72 (77)
230 PF15513 DUF4651: Domain of un 75.6 6.7 0.00015 23.4 3.6 18 21-38 9-26 (62)
231 PRK14548 50S ribosomal protein 73.4 21 0.00046 22.9 6.5 55 112-166 24-81 (84)
232 PF02714 DUF221: Domain of unk 72.6 9.4 0.0002 31.4 5.3 56 48-130 1-56 (325)
233 COG5638 Uncharacterized conser 72.2 21 0.00046 30.0 7.0 79 3-81 143-296 (622)
234 TIGR03636 L23_arch archaeal ri 72.0 22 0.00047 22.4 6.4 56 111-166 16-74 (77)
235 KOG4008 rRNA processing protei 70.1 4.6 9.9E-05 31.1 2.6 34 5-38 39-72 (261)
236 PF14893 PNMA: PNMA 68.5 8 0.00017 31.9 3.9 75 4-81 16-95 (331)
237 KOG4410 5-formyltetrahydrofola 68.1 35 0.00076 27.3 7.1 53 104-157 326-378 (396)
238 KOG2891 Surface glycoprotein [ 67.1 8.8 0.00019 30.4 3.7 65 6-70 149-247 (445)
239 KOG4246 Predicted DNA-binding 66.7 2.5 5.4E-05 38.6 0.8 13 106-118 143-155 (1194)
240 KOG1295 Nonsense-mediated deca 66.7 9.2 0.0002 31.8 3.9 67 108-174 7-80 (376)
241 PF09707 Cas_Cas2CT1978: CRISP 65.9 17 0.00038 23.4 4.3 49 5-53 24-72 (86)
242 KOG4246 Predicted DNA-binding 63.3 4 8.8E-05 37.4 1.4 7 47-53 61-67 (1194)
243 KOG4213 RNA-binding protein La 62.1 13 0.00028 27.5 3.5 46 18-63 118-168 (205)
244 PF07292 NID: Nmi/IFP 35 domai 61.7 4.3 9.2E-05 26.3 0.9 24 4-27 50-73 (88)
245 KOG4365 Uncharacterized conser 61.3 1.2 2.6E-05 37.4 -2.0 75 6-81 3-80 (572)
246 COG0150 PurM Phosphoribosylami 61.1 4 8.7E-05 33.4 0.9 49 19-68 274-322 (345)
247 KOG4483 Uncharacterized conser 58.1 33 0.00072 28.9 5.6 55 108-165 391-446 (528)
248 KOG2187 tRNA uracil-5-methyltr 57.2 48 0.001 29.1 6.6 40 45-84 63-102 (534)
249 PF09902 DUF2129: Uncharacteri 55.0 49 0.0011 20.5 5.5 50 8-70 5-54 (71)
250 PTZ00191 60S ribosomal protein 54.7 77 0.0017 22.7 6.3 56 110-165 83-141 (145)
251 COG0018 ArgS Arginyl-tRNA synt 54.3 1.3E+02 0.0028 27.3 9.1 97 20-143 60-165 (577)
252 PTZ00191 60S ribosomal protein 54.2 48 0.001 23.7 5.2 56 8-63 83-140 (145)
253 PF15063 TC1: Thyroid cancer p 53.4 9.5 0.0002 23.6 1.4 26 9-34 28-53 (79)
254 PRK11558 putative ssRNA endonu 51.0 38 0.00083 22.4 4.0 50 6-55 27-76 (97)
255 PF08544 GHMP_kinases_C: GHMP 50.6 59 0.0013 20.2 5.6 43 21-65 37-79 (85)
256 PF03439 Spt5-NGN: Early trans 50.3 30 0.00065 22.1 3.5 35 32-68 33-67 (84)
257 PF11823 DUF3343: Protein of u 49.9 21 0.00046 22.0 2.7 28 46-73 2-29 (73)
258 PF11411 DNA_ligase_IV: DNA li 49.7 14 0.00031 19.3 1.5 16 16-31 19-34 (36)
259 cd04889 ACT_PDH-BS-like C-term 49.3 48 0.001 18.8 5.1 42 21-62 13-55 (56)
260 PF08544 GHMP_kinases_C: GHMP 48.7 64 0.0014 20.0 6.1 45 122-167 36-80 (85)
261 PF00403 HMA: Heavy-metal-asso 45.9 59 0.0013 18.8 6.1 53 8-63 1-57 (62)
262 KOG0156 Cytochrome P450 CYP2 s 45.4 44 0.00095 29.5 4.8 59 10-75 36-97 (489)
263 PRK08559 nusG transcription an 44.8 1.1E+02 0.0024 22.0 6.2 33 33-67 36-68 (153)
264 KOG4019 Calcineurin-mediated s 44.4 19 0.00041 26.7 2.1 68 110-179 12-85 (193)
265 CHL00123 rps6 ribosomal protei 42.4 89 0.0019 20.6 4.9 54 8-63 10-80 (97)
266 PF10567 Nab6_mRNP_bdg: RNA-re 40.9 84 0.0018 25.4 5.2 54 108-161 15-79 (309)
267 TIGR01873 cas_CT1978 CRISPR-as 40.0 63 0.0014 20.9 3.7 50 5-54 24-74 (87)
268 COG5227 SMT3 Ubiquitin-like pr 39.3 90 0.002 20.2 4.2 66 2-68 30-101 (103)
269 PF07530 PRE_C2HC: Associated 38.6 93 0.002 19.0 4.7 58 21-81 2-63 (68)
270 PF12091 DUF3567: Protein of u 38.4 40 0.00086 21.6 2.6 16 119-134 61-76 (85)
271 PF15407 Spo7_2_N: Sporulation 37.4 12 0.00026 22.9 0.1 25 4-28 25-49 (67)
272 PF12829 Mhr1: Transcriptional 36.4 85 0.0018 20.5 3.9 54 115-168 19-73 (91)
273 PF14026 DUF4242: Protein of u 36.2 1.1E+02 0.0024 19.1 7.5 59 111-170 3-70 (77)
274 PRK11901 hypothetical protein; 35.8 1.1E+02 0.0024 25.2 5.3 51 17-69 253-308 (327)
275 KOG3671 Actin regulatory prote 35.7 62 0.0013 28.2 4.0 51 119-170 89-139 (569)
276 KOG4008 rRNA processing protei 35.0 39 0.00084 26.3 2.5 33 109-141 41-73 (261)
277 COG0030 KsgA Dimethyladenosine 34.6 64 0.0014 25.7 3.8 44 7-63 96-139 (259)
278 PRK11901 hypothetical protein; 34.5 1.6E+02 0.0034 24.3 6.0 51 120-171 254-309 (327)
279 PRK08559 nusG transcription an 34.5 1.8E+02 0.0038 21.0 6.0 28 141-168 41-68 (153)
280 PRK11634 ATP-dependent RNA hel 34.5 75 0.0016 29.1 4.7 66 9-81 489-561 (629)
281 PF08156 NOP5NT: NOP5NT (NUC12 34.1 15 0.00032 22.4 0.2 39 21-66 27-65 (67)
282 PF14111 DUF4283: Domain of un 34.0 46 0.001 23.7 2.8 33 9-41 107-140 (153)
283 KOG2891 Surface glycoprotein [ 33.9 55 0.0012 26.1 3.2 66 107-172 148-248 (445)
284 PF01071 GARS_A: Phosphoribosy 33.9 1.5E+02 0.0033 22.4 5.6 47 19-66 25-71 (194)
285 KOG2295 C2H2 Zn-finger protein 33.7 10 0.00022 33.2 -0.8 68 106-173 229-300 (648)
286 COG3254 Uncharacterized conser 33.4 1.5E+02 0.0033 19.9 5.5 42 21-63 27-69 (105)
287 PRK02886 hypothetical protein; 33.2 97 0.0021 20.0 3.7 51 7-70 8-58 (87)
288 PF05189 RTC_insert: RNA 3'-te 32.7 99 0.0022 20.5 4.1 47 8-54 12-66 (103)
289 PF12623 Hen1_L: RNA repair, l 32.6 1.1E+02 0.0025 23.8 4.7 56 8-64 120-182 (245)
290 PF02829 3H: 3H domain; Inter 32.4 84 0.0018 20.8 3.5 52 16-67 7-58 (98)
291 COG5193 LHP1 La protein, small 32.0 26 0.00057 29.5 1.3 57 7-63 175-244 (438)
292 PHA01632 hypothetical protein 31.8 56 0.0012 18.9 2.2 21 9-29 19-39 (64)
293 smart00596 PRE_C2HC PRE_C2HC d 31.6 1.3E+02 0.0028 18.5 4.4 58 21-81 2-63 (69)
294 PF08734 GYD: GYD domain; Int 30.6 1.5E+02 0.0034 19.1 5.5 44 122-165 22-66 (91)
295 PF06014 DUF910: Bacterial pro 30.4 36 0.00077 20.4 1.4 15 21-35 5-19 (62)
296 TIGR00405 L26e_arch ribosomal 30.3 2E+02 0.0044 20.4 6.1 27 41-67 34-60 (145)
297 KOG2854 Possible pfkB family c 29.4 2.2E+02 0.0048 23.7 6.0 50 3-53 78-127 (343)
298 PF08442 ATP-grasp_2: ATP-gras 28.7 1.6E+02 0.0035 22.5 5.0 54 18-71 25-81 (202)
299 PF14714 KH_dom-like: KH-domai 28.0 1.6E+02 0.0035 18.6 5.2 57 60-137 13-76 (80)
300 cd00027 BRCT Breast Cancer Sup 28.0 1E+02 0.0022 17.6 3.3 26 7-32 2-27 (72)
301 PF14893 PNMA: PNMA 27.6 48 0.001 27.5 2.2 24 108-131 18-41 (331)
302 COG5507 Uncharacterized conser 27.4 60 0.0013 21.4 2.1 20 46-65 67-86 (117)
303 PF00398 RrnaAD: Ribosomal RNA 26.3 58 0.0012 25.9 2.4 23 6-28 97-119 (262)
304 cd04908 ACT_Bt0572_1 N-termina 26.1 1.5E+02 0.0032 17.5 7.7 44 121-164 14-58 (66)
305 KOG1888 Putative phosphoinosit 26.1 1.4E+02 0.003 28.0 4.8 66 8-77 311-380 (868)
306 PRK02302 hypothetical protein; 25.4 2E+02 0.0043 18.7 4.7 38 27-70 23-60 (89)
307 KOG3003 Molecular chaperone of 25.4 1.5E+02 0.0033 23.1 4.3 17 18-34 162-178 (236)
308 PF12993 DUF3877: Domain of un 25.1 1.5E+02 0.0033 21.9 4.0 22 118-139 107-128 (175)
309 PF03389 MobA_MobL: MobA/MobL 25.0 1.1E+02 0.0024 23.6 3.7 47 10-56 71-125 (216)
310 PF13820 Nucleic_acid_bd: Puta 25.0 1.4E+02 0.003 21.6 3.8 59 8-67 6-67 (149)
311 PRK10629 EnvZ/OmpR regulon mod 24.9 2.5E+02 0.0054 19.7 8.0 71 5-80 34-108 (127)
312 PRK11230 glycolate oxidase sub 24.4 1.7E+02 0.0037 26.0 5.1 47 20-66 203-255 (499)
313 PRK15464 cold shock-like prote 24.3 47 0.001 20.4 1.2 11 44-54 15-25 (70)
314 PF01984 dsDNA_bind: Double-st 24.0 69 0.0015 21.6 2.0 21 12-32 75-95 (107)
315 COG0150 PurM Phosphoribosylami 23.6 36 0.00077 28.2 0.7 49 121-169 274-322 (345)
316 PRK09937 stationary phase/star 23.3 57 0.0012 20.3 1.5 10 44-53 12-21 (74)
317 KOG2854 Possible pfkB family c 22.9 1.1E+02 0.0025 25.3 3.4 57 7-63 161-230 (343)
318 PF05036 SPOR: Sporulation rel 22.5 29 0.00064 21.0 0.0 59 7-66 5-65 (76)
319 TIGR02381 cspD cold shock doma 22.4 59 0.0013 19.7 1.4 38 44-82 12-55 (68)
320 COG1207 GlmU N-acetylglucosami 22.4 3.2E+02 0.007 23.7 6.0 62 108-169 97-174 (460)
321 PRK10943 cold shock-like prote 22.1 59 0.0013 19.8 1.3 11 44-54 14-24 (69)
322 PRK14998 cold shock-like prote 22.1 64 0.0014 20.0 1.5 11 44-54 12-22 (73)
323 PF02714 DUF221: Domain of unk 21.8 84 0.0018 25.8 2.6 23 149-171 1-23 (325)
324 cd01612 APG12_C Ubiquitin-like 21.8 2.3E+02 0.0051 18.2 4.3 15 14-28 22-36 (87)
325 PRK15463 cold shock-like prote 21.6 58 0.0013 20.0 1.2 11 44-54 15-25 (70)
326 smart00738 NGN In Spt5p, this 21.6 91 0.002 20.5 2.3 23 45-67 59-81 (106)
327 PRK09507 cspE cold shock prote 21.3 62 0.0013 19.7 1.3 11 44-54 14-24 (69)
328 COG2608 CopZ Copper chaperone 21.2 2.1E+02 0.0045 17.4 4.8 45 7-54 4-48 (71)
329 TIGR00755 ksgA dimethyladenosi 21.1 1.1E+02 0.0025 24.0 3.1 23 8-30 96-118 (253)
330 PRK05192 tRNA uridine 5-carbox 21.1 1.3E+02 0.0027 27.6 3.6 39 3-41 298-336 (618)
331 cd04879 ACT_3PGDH-like ACT_3PG 20.9 1.8E+02 0.004 16.6 4.9 45 10-54 3-49 (71)
332 cd01611 GABARAP Ubiquitin doma 20.9 2.4E+02 0.0051 19.2 4.2 15 14-28 47-61 (112)
333 COG5584 Predicted small secret 20.8 98 0.0021 20.4 2.1 27 13-39 29-55 (103)
334 PTZ00380 microtubule-associate 20.7 2E+02 0.0044 19.9 3.8 12 45-56 97-108 (121)
335 KOG3702 Nuclear polyadenylated 20.7 64 0.0014 29.2 1.7 70 8-78 513-585 (681)
336 TIGR01639 P_fal_TIGR01639 Plas 20.4 56 0.0012 19.4 1.0 23 13-35 5-27 (61)
337 cd00187 TOP4c DNA Topoisomeras 20.3 2.7E+02 0.0058 24.4 5.3 22 7-28 226-247 (445)
338 COG5594 Uncharacterized integr 20.3 1.1E+02 0.0024 28.6 3.1 30 44-73 356-385 (827)
339 PF00313 CSD: 'Cold-shock' DNA 20.3 75 0.0016 18.8 1.5 12 44-55 11-22 (66)
340 PF11910 NdhO: Cyanobacterial 20.2 60 0.0013 19.5 1.0 22 26-54 31-52 (67)
341 cd00225 API3 Ascaris pepsin in 20.2 1.1E+02 0.0024 21.9 2.5 22 6-27 110-132 (159)
342 COG1160 Predicted GTPases [Gen 20.1 6E+02 0.013 22.3 7.3 54 70-143 378-438 (444)
343 PRK11634 ATP-dependent RNA hel 20.0 7E+02 0.015 23.0 12.7 65 110-179 488-558 (629)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.5e-33 Score=226.20 Aligned_cols=152 Identities=26% Similarity=0.423 Sum_probs=136.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++|||+|||+++|+++|+++|+.||+|++|+|. .++.++|||||+|.++++|+.||..||+..|.+++|+|.++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 56899999999999999999999999999999994 467789999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~ 157 (260)
+... ....++|||.|||..+++++|+++|++||.|..+.++.+.. .++|||+|.+.+
T Consensus 186 p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 186 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred cccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 4221 11246899999999999999999999999999999987753 369999999999
Q ss_pred HHHHHHHHcCCccccccc
Q 024935 158 DMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~ 175 (260)
+|++|++.||+..+.+..
T Consensus 247 ~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGS 264 (346)
T ss_pred HHHHHHHHhCCCccCCCc
Confidence 999999999999987743
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=183.60 Aligned_cols=183 Identities=65% Similarity=1.088 Sum_probs=159.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
|+++.+++|||+|||.++-+.+|.+||.+||.|.+|.|+......+||||+|+++.+|+.||..-+|..++|..|.|+|+
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 88999999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC---------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEE
Q 024935 81 HGGRGRSSSDRHSSHSS---------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIV 151 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v 151 (260)
........ ....+.. +...++.......|.|.+||+..++++|++++.+.|.|++..+..+. ++.|
T Consensus 81 rggr~s~~--~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV 155 (241)
T KOG0105|consen 81 RGGRSSSD--RRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVV 155 (241)
T ss_pred cCCCcccc--cccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceee
Confidence 98763222 1111111 12345667788999999999999999999999999999999999886 7899
Q ss_pred EEcChhHHHHHHHHcCCccccccceeeEEeeecccCC
Q 024935 152 DYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (260)
Q Consensus 152 ~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (260)
+|...++++-|+.+|+...+...-...+|.+......
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 9999999999999999999888777888888877554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.5e-30 Score=215.42 Aligned_cols=152 Identities=24% Similarity=0.440 Sum_probs=136.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||+.+++++|+++|+.||+|.+|+|. .++.++|||||+|.+.++|+.||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999994 357889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~ 157 (260)
+... .....+|||+|||..+++++|.++|..||.|..+.+..+. ..+||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred cccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 4321 1134689999999999999999999999999999988764 4579999999999
Q ss_pred HHHHHHHHcCCccccccc
Q 024935 158 DMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~ 175 (260)
+|+.|++.|||..+.|..
T Consensus 143 ~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCT 160 (352)
T ss_pred HHHHHHHHhCCCccCCCc
Confidence 999999999999998854
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.8e-30 Score=220.95 Aligned_cols=165 Identities=21% Similarity=0.345 Sum_probs=138.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++|||+|||+.+++++|+++|..||+|..|.|. .++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46799999999999999999999999999999994 367899999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~ 157 (260)
......... ...........+|||+||++.+++++|+++|+.||.|..+.+..+. ..|||||+|.+.+
T Consensus 186 ~~p~a~~~~--------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPII--------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccccc--------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 321110000 0001112245689999999999999999999999999999999874 4579999999999
Q ss_pred HHHHHHHHcCCcccccccee
Q 024935 158 DMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~ 177 (260)
+|..|+..||+..++|+.++
T Consensus 258 ~A~kAI~amNg~elgGr~Lr 277 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLR 277 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEE
Confidence 99999999999999996444
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-30 Score=194.21 Aligned_cols=171 Identities=19% Similarity=0.323 Sum_probs=145.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
-|||+.|.+.++-++|++.|.+||+|.+++++ .|++++||+||.|.+.++|+.||..|||.+|.++.|.-.|+.-+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 48999999999999999999999999999994 468999999999999999999999999999999999999997544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHH
Q 024935 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 164 (260)
..... ....-..-.....+.+++||++|++..+++++|++.|..||.|..|.+++++ +|+||.|++.|.|..||-
T Consensus 144 ~e~n~---~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 144 SEMNG---KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIV 218 (321)
T ss_pred cccCC---CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHH
Confidence 11000 0000001122345678999999999999999999999999999999999885 599999999999999999
Q ss_pred HcCCccccccceeeEEeee
Q 024935 165 KLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 165 ~l~~~~~~g~~~~~~~~~~ 183 (260)
.+|+.++.|..++|..-..
T Consensus 219 ~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred HhcCceeCceEEEEecccc
Confidence 9999999999888766544
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.2e-29 Score=216.86 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=140.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
++.++|||+|||..+++++|+++|+.||.|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5678999999999999999999999999999999954 57789999999999999999998 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcCh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~ 156 (260)
............ . .....+...+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.
T Consensus 166 ~~~~~~~~~~~~--~-----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAAT--H-----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhccc--c-----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 543221110000 0 0011123679999999999999999999999999999999977543 6999999999
Q ss_pred hHHHHHHHHcCCccccccceeeEE
Q 024935 157 DDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
++|..|+..|||..+.|+.+...+
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEE
Confidence 999999999999999996554433
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.9e-29 Score=207.08 Aligned_cols=175 Identities=25% Similarity=0.361 Sum_probs=137.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (260)
..++|||+|||+.+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999999843 46789999999999999999999999999877 5788888
Q ss_pred ccCCCCCCCC--------------CC-CCC----------------------------------------------CCC-
Q 024935 80 AHGGRGRSSS--------------DR-HSS----------------------------------------------HSS- 97 (260)
Q Consensus 80 ~~~~~~~~~~--------------~~-~~~----------------------------------------------~~~- 97 (260)
+......... .. ... ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7644311000 00 000 000
Q ss_pred -----------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHH
Q 024935 98 -----------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 162 (260)
Q Consensus 98 -----------~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a 162 (260)
+.........+.+|||+|||+.+++++|.++|++||.|..+.++.+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00000011233479999999999999999999999999999999775 457999999999999999
Q ss_pred HHHcCCccccccceeeE
Q 024935 163 IKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 163 ~~~l~~~~~~g~~~~~~ 179 (260)
+..|||..++|+.+...
T Consensus 328 i~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVS 344 (352)
T ss_pred HHHhCCCEECCeEEEEE
Confidence 99999999999655443
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1e-28 Score=210.94 Aligned_cols=160 Identities=18% Similarity=0.237 Sum_probs=135.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHh--CCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--l~~~~~~g~~i~v~~~~~ 82 (260)
|+++|||+|||+.+++++|+++|++||.|..|.+.. .++||||+|.+.++|+.|+.. +++..+.|++|.|.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999973 478999999999999999986 478999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHH
Q 024935 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a 162 (260)
.......... ...........|+|.||++.+++++|.++|+.||.|..|.++.+...++|||+|.+.++|..|
T Consensus 78 ~~~~~~~~~~-------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 78 QEIKRDGNSD-------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred cccccCCCCc-------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHH
Confidence 4322111000 000112234579999999999999999999999999999998877767999999999999999
Q ss_pred HHHcCCcccccc
Q 024935 163 IKKLDDSEFRNA 174 (260)
Q Consensus 163 ~~~l~~~~~~g~ 174 (260)
++.|||..+.|.
T Consensus 151 ~~~Lng~~i~~~ 162 (481)
T TIGR01649 151 KAALNGADIYNG 162 (481)
T ss_pred HHHhcCCcccCC
Confidence 999999999764
No 9
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=190.51 Aligned_cols=147 Identities=28% Similarity=0.523 Sum_probs=136.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (260)
-+|||||||.++++.+|+.||++||.|.+|.|+ +.||||..++...|..|+..|||..|+|..|+|+-++++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 369999999999999999999999999999998 78999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHc
Q 024935 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l 166 (260)
..++|+|+||.+.++.++|++.|.+||.|+.|.|.++ |+||.|+-.++|..|+..|
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcc
Confidence 3468999999999999999999999999999999988 9999999999999999999
Q ss_pred CCccccccceeeEEeee
Q 024935 167 DDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 167 ~~~~~~g~~~~~~~~~~ 183 (260)
|+.++.|+..+..+...
T Consensus 133 ~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccccccceeeeeeecc
Confidence 99999998877666544
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.7e-28 Score=214.37 Aligned_cols=152 Identities=26% Similarity=0.419 Sum_probs=134.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
+|||+|||+++|+++|.++|+.||+|.+|+|.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999943 57789999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHH
Q 024935 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKH 161 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~ 161 (260)
.. ......+|||+|||..+++++|.++|+.||.|..|.+..+. ..+||||+|.+.++|..
T Consensus 82 ~~-----------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SL-----------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred cc-----------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 11 11123579999999999999999999999999999998774 45799999999999999
Q ss_pred HHHHcCCccccccce
Q 024935 162 AIKKLDDSEFRNAFS 176 (260)
Q Consensus 162 a~~~l~~~~~~g~~~ 176 (260)
|+..|||..+.|..+
T Consensus 145 Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 145 AIQKVNGMLLNDKEV 159 (562)
T ss_pred HHHHhcccEecCceE
Confidence 999999999998543
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=7.3e-28 Score=205.71 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=136.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.++++|||+|||+ .+|+++|.++|+.||.|..|++..+ .+|||||+|.+.++|..|+..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3678999999998 6999999999999999999999654 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCC-----C---CCCCCC--CC--------CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC--ccEEEEEe
Q 024935 83 GRGRSSSDR-----H---SSHSSG--RG--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 142 (260)
Q Consensus 83 ~~~~~~~~~-----~---~~~~~~--~~--------~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~ 142 (260)
......... . ..+... .. ......+..+|||.|||..+++++|+++|+.||. +..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 432211110 0 001000 00 0011245678999999999999999999999998 77777764
Q ss_pred CC--CCCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 143 ~~--~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
.. ..++|||+|.+.++|.+|+..||+.++.++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 33 2469999999999999999999999999865
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.8e-27 Score=206.27 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=132.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhc------------CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (260)
++..++|||+|||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 234444443 558999999999999999996 999999
Q ss_pred CCcEEEEEEccCCCCCCCCCCCCC------CCCC----CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEE
Q 024935 71 DGHRLRVELAHGGRGRSSSDRHSS------HSSG----RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (260)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~ 140 (260)
.|..|.|.........+....... .... ...........+|||+|||..+++++|.++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999976543321110000000 0000 001112245579999999999999999999999999999998
Q ss_pred EeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 141 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 141 ~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+.+. ..|||||+|.+.++|..|+..|||..+.|..+..
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 8764 4579999999999999999999999999965443
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.7e-27 Score=205.12 Aligned_cols=174 Identities=20% Similarity=0.349 Sum_probs=136.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||..+++++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999843 57889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCC------CCCC---CCCCCCCCCcceEEecCCCCCC----------CHHHHHHHHHhcCCccEEEEEe
Q 024935 82 GGRGRSSSDRHSS------HSSG---RGRGVSRRSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 142 (260)
Q Consensus 82 ~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~~~~ 142 (260)
............. .... ........+..+|+|.|+.... ..++|+++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 6543322111110 0000 0011122356678898986421 2367999999999999999986
Q ss_pred CC-------CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 143 DG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 143 ~~-------~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+. ..|+|||+|.+.++|+.|+..|||.+|+|+.+.+
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~ 496 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVA 496 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 52 2369999999999999999999999999976644
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=4.2e-27 Score=200.21 Aligned_cols=170 Identities=22% Similarity=0.352 Sum_probs=131.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccC-CcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~ 82 (260)
.++|||+|||+++++++|+++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..+. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 48999999999999999999999999999999954 5789999999999999999999999998885 77766654431
Q ss_pred CCC-------C--C--------------C-------CCCCCCCCCC----------------------------------
Q 024935 83 GRG-------R--S--------------S-------SDRHSSHSSG---------------------------------- 98 (260)
Q Consensus 83 ~~~-------~--~--------------~-------~~~~~~~~~~---------------------------------- 98 (260)
... . . . .........+
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 100 0 0 0 0000000000
Q ss_pred ---CCC---CCCCCCcceEEecCCCCCCCHHHHHHHHHhc--CCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcc
Q 024935 99 ---RGR---GVSRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (260)
Q Consensus 99 ---~~~---~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~ 170 (260)
... ........+|||+||+..+++++|+++|+.| |.|..|.++.+ ||||+|++.++|++|++.||+.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 000 0011234679999999999999999999999 99999988754 99999999999999999999999
Q ss_pred ccccceeeE
Q 024935 171 FRNAFSRAY 179 (260)
Q Consensus 171 ~~g~~~~~~ 179 (260)
|.|+.+...
T Consensus 294 i~Gr~I~V~ 302 (578)
T TIGR01648 294 LEGSEIEVT 302 (578)
T ss_pred ECCEEEEEE
Confidence 999544433
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.1e-28 Score=178.87 Aligned_cols=160 Identities=24% Similarity=0.408 Sum_probs=141.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..+.|+|.-||.++|++||+.||..+|+|++|++ +.+|++.||+||.|.++++|++|+..|||..+..+.|+|.|+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 4467999999999999999999999999999999 4579999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~ 157 (260)
+... ...+.+|||.+||..+++.+|+++|.+||.|+...|..+.. .|.+||.|+...
T Consensus 120 PSs~-------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 120 PSSD-------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred CChh-------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 5332 23456899999999999999999999999999888877754 458999999999
Q ss_pred HHHHHHHHcCCccccccceeeEEeeecc
Q 024935 158 DMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (260)
+|++|++.|||..-.|. ...|.++..
T Consensus 181 EAe~AIk~lNG~~P~g~--tepItVKFa 206 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGC--TEPITVKFA 206 (360)
T ss_pred HHHHHHHhccCCCCCCC--CCCeEEEec
Confidence 99999999999998874 345666644
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.9e-27 Score=188.87 Aligned_cols=174 Identities=24% Similarity=0.339 Sum_probs=137.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccC-CcEEEEEEcc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (260)
.+-||||.||.++.|++|.-||++.|+|-+++|++ ++.++|||||+|.+.+.|++|++.||+..|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 46799999999999999999999999999999954 5899999999999999999999999999885 8888887765
Q ss_pred CCC-------CCCC-----------------------CCCCCCCCCC---------------------------------
Q 024935 82 GGR-------GRSS-----------------------SDRHSSHSSG--------------------------------- 98 (260)
Q Consensus 82 ~~~-------~~~~-----------------------~~~~~~~~~~--------------------------------- 98 (260)
... +... .........+
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 210 0000 0000000000
Q ss_pred --CCC--CC---CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 99 --RGR--GV---SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 99 --~~~--~~---~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
... .+ ....-..|||.||+.++|++.|+++|++||.|..|+.+.+ ||||.|.+.++|.+||+.+|++++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 000 00 1123357999999999999999999999999999999977 999999999999999999999999
Q ss_pred cccceeeEEeee
Q 024935 172 RNAFSRAYVRVR 183 (260)
Q Consensus 172 ~g~~~~~~~~~~ 183 (260)
.|..+-+.+...
T Consensus 319 dG~~iEvtLAKP 330 (506)
T KOG0117|consen 319 DGSPIEVTLAKP 330 (506)
T ss_pred cCceEEEEecCC
Confidence 997765555544
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=188.60 Aligned_cols=166 Identities=24% Similarity=0.427 Sum_probs=139.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCc-cC--CcEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVE 78 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~--g~~i~v~ 78 (260)
..-+|||+-||..++|.||+++|++||.|.+|.|. .++.++|||||.|.+.++|.+|+.+||+.. |- ..+|+|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34579999999999999999999999999999994 468899999999999999999999999854 43 4689999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcC
Q 024935 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~ 155 (260)
++....... ....+|||+.|+..+++.+|+++|.+||.|++|.|+.+. .+|+|||.|.+
T Consensus 113 ~Ad~E~er~------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 113 YADGERERI------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ccchhhhcc------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 987544321 224689999999999999999999999999999999985 45799999999
Q ss_pred hhHHHHHHHHcCCcc-ccccceeeEEeeecccCCCC
Q 024935 156 YDDMKHAIKKLDDSE-FRNAFSRAYVRVREYDHRRD 190 (260)
Q Consensus 156 ~~~a~~a~~~l~~~~-~~g~~~~~~~~~~~~~~~r~ 190 (260)
.+.|..||+.||+.. +.|. ...+.|+..+..+.
T Consensus 175 ke~A~~Aika~ng~~tmeGc--s~PLVVkFADtqkd 208 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGC--SQPLVVKFADTQKD 208 (510)
T ss_pred HHHHHHHHHhhccceeeccC--CCceEEEecccCCC
Confidence 999999999999974 4553 35666666555443
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=9.1e-27 Score=203.61 Aligned_cols=176 Identities=22% Similarity=0.345 Sum_probs=142.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccC----CcEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~i~v~ 78 (260)
..++|||+|||.++|+++|+++|..||+|..+.+.. ++.++|||||+|.+.++|..|+..|||..+. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457799999999999999999999999999999943 4677899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcC
Q 024935 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~ 155 (260)
++......... ...................+|||+||+..+++++|+++|+.||.|..+.++.+. ..|||||+|.+
T Consensus 257 ~a~~k~er~~~-~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 257 RAQKRAEREAE-LRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred cccChhhhHHH-HHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 87644321000 000000000011223456789999999999999999999999999999999874 34799999999
Q ss_pred hhHHHHHHHHcCCccccccceeeEEe
Q 024935 156 YDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.++|.+|+..||+..+.|+.+...+.
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEEEec
Confidence 99999999999999999976655443
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=163.24 Aligned_cols=165 Identities=22% Similarity=0.353 Sum_probs=141.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
...||||+||+..++++.|.+||-+.|+|..+.+.. +...+|||||+|.++|+|+-|++.||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 457999999999999999999999999999999944 46689999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccE-EEEEeCCC----CCEEEEEEcCh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDGS----GTTGIVDYTNY 156 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~----~~~~~v~f~~~ 156 (260)
... .....+.++||+||.+.+.+..|.+.|+.||.+.. .+++.++. +++|||.|.+.
T Consensus 88 ~~~------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 88 AHQ------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ccc------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 211 22233478999999999999999999999998765 45555544 45999999999
Q ss_pred hHHHHHHHHcCCccccccceeeEEeeecccC
Q 024935 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (260)
+.+..|+..+||..+.++.++..+..++...
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999988777776665544
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.3e-25 Score=192.07 Aligned_cols=176 Identities=22% Similarity=0.366 Sum_probs=136.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
+++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999953 457899999999999999999999999999999999999653
Q ss_pred CCCCCCC-------------CC-----------------C-------CCCCC------------------------C---
Q 024935 83 GRGRSSS-------------DR-----------------H-------SSHSS------------------------G--- 98 (260)
Q Consensus 83 ~~~~~~~-------------~~-----------------~-------~~~~~------------------------~--- 98 (260)
....... .. . ..... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 2110000 00 0 00000 0
Q ss_pred ----CCCCC---CCCCcceEEecCCCCCCC----------HHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHH
Q 024935 99 ----RGRGV---SRRSEYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (260)
Q Consensus 99 ----~~~~~---~~~~~~~~~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~ 161 (260)
..... ...+..+|+|.||....+ .++|.++|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 00000 113456788888854443 3689999999999999999877778999999999999999
Q ss_pred HHHHcCCccccccceeeEEe
Q 024935 162 AIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 162 a~~~l~~~~~~g~~~~~~~~ 181 (260)
|++.|||..++|+.+.+...
T Consensus 426 A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred HHHHhcCcccCCeEEEEEEE
Confidence 99999999999977665433
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2e-25 Score=181.43 Aligned_cols=177 Identities=20% Similarity=0.326 Sum_probs=145.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.||||++||+.++.++|.++|+.+|+|..+.+.. ++..+||+||+|.-.++++.|+..+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999999954 3567999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCC-----CCCCCCCC--CCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC---CEEEEEE
Q 024935 84 RGRSSSDRHS-----SHSSGRGR--GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDY 153 (260)
Q Consensus 84 ~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~v~f 153 (260)
.......... ........ .....+...|+|.|||..+...+|+.+|+.||.|..|.|+....+ |||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 4433111000 00000000 011234689999999999999999999999999999999977554 6999999
Q ss_pred cChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 154 ~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
....+|..|++.+|+.+|.|+.+-..+.|.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 999999999999999999997766555554
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.6e-25 Score=163.56 Aligned_cols=171 Identities=23% Similarity=0.362 Sum_probs=139.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEEEc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 80 (260)
...|||.+||+.+|..||.++|++||.|+.-+| ..++.++|.+||.|....+|+.||..|||..--| .+|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 357999999999999999999999999988877 3468999999999999999999999999987765 58999999
Q ss_pred cCCCCCCCCC-------CCC-CCCCC------------------------------------CCCCCCCCCcceEEecCC
Q 024935 81 HGGRGRSSSD-------RHS-SHSSG------------------------------------RGRGVSRRSEYRVLVTGL 116 (260)
Q Consensus 81 ~~~~~~~~~~-------~~~-~~~~~------------------------------------~~~~~~~~~~~~~~v~nl 116 (260)
..+....... .+. .+.+. ...+.....+++|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 8653221100 000 00000 011222345789999999
Q ss_pred CCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 117 PSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 117 ~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
.+++.+..|+++|.+||.|..++++++. .+|||||.+.+.++|..|+..|||..++++.+
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 9999999999999999999999999874 46899999999999999999999999999654
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=176.85 Aligned_cols=178 Identities=22% Similarity=0.388 Sum_probs=138.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
|-..|+|.|||+.+.+.+|..+|+.||.|.+|.| ..++..+|||||+|.+..+|..|++.+|+..|+|++|-|.||..
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 4568999999999999999999999999999999 44678889999999999999999999999999999999999884
Q ss_pred CCCCCC-----------------------CCC--------------CCCCCC------------------------C---
Q 024935 83 GRGRSS-----------------------SDR--------------HSSHSS------------------------G--- 98 (260)
Q Consensus 83 ~~~~~~-----------------------~~~--------------~~~~~~------------------------~--- 98 (260)
...... ... ...... +
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 321100 000 000000 0
Q ss_pred --CCC-----CCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHc-
Q 024935 99 --RGR-----GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKL- 166 (260)
Q Consensus 99 --~~~-----~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l- 166 (260)
... ......+.+|||.|||+++++++|.++|.+||.|.++.+..++.+ |.|||.|.+..+|+.||...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000 001123478999999999999999999999999999999887654 68999999999999999976
Q ss_pred ----CC-ccccccceeeEEee
Q 024935 167 ----DD-SEFRNAFSRAYVRV 182 (260)
Q Consensus 167 ----~~-~~~~g~~~~~~~~~ 182 (260)
.| ..+.|+.+.....+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred ccCCCceEEEeccEEeeeecc
Confidence 23 45666555444443
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.9e-25 Score=170.46 Aligned_cols=163 Identities=21% Similarity=0.354 Sum_probs=137.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
|.||||.|...+.|+.|+..|.+||+|++|.|.+ |++++|||||+|+-+|.|..|++.|||..+.|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6799999999999999999999999999999955 6899999999999999999999999999999999999743321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHH
Q 024935 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDM 159 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a 159 (260)
....+. ....+........|||..+.++.++.+|+..|+.||+|+.|.+...+. +||+||+|.+....
T Consensus 194 pQAQpi--------ID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 194 PQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccchH--------HHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 110000 000011123456899999999999999999999999999999998864 46999999999999
Q ss_pred HHHHHHcCCcccccccee
Q 024935 160 KHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~ 177 (260)
.+|+..||-..++|..++
T Consensus 266 ~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLR 283 (544)
T ss_pred HHHhhhcchhhcccceEe
Confidence 999999999999996544
No 25
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.1e-24 Score=159.00 Aligned_cols=163 Identities=38% Similarity=0.658 Sum_probs=133.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (260)
..|||++||+.+.+.+|..||..||.|.++.|+ .||+||+|.+..+|..|+..||+..|.|..+.|+|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 469999999999999999999999999999997 789999999999999999999999999999999998853322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHH
Q 024935 87 SSSDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 165 (260)
......+.... ......+....+.+.|.+++..+.+++|.++|.++|.+....+ ..+++||+|...++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchh
Confidence 11100000111 1233456677899999999999999999999999999955444 334899999999999999999
Q ss_pred cCCccccccceee
Q 024935 166 LDDSEFRNAFSRA 178 (260)
Q Consensus 166 l~~~~~~g~~~~~ 178 (260)
|++..+.++.++.
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999966555
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.4e-23 Score=167.36 Aligned_cols=141 Identities=26% Similarity=0.382 Sum_probs=127.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec-CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 85 (260)
..|||| +.+|+..|.++|+++|+|.++++- ..+ +.|||||.|.++++|+.|+..||...+.|++|.+-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 468999 999999999999999999999992 223 99999999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC--CEEEEEEcChhHHHHHH
Q 024935 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAI 163 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~v~f~~~~~a~~a~ 163 (260)
..+||.||++.++..+|.++|+.||.|+.|++..+..+ || ||+|++.++|.+|+
T Consensus 77 -----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 77 -----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred -----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 22999999999999999999999999999999988654 68 99999999999999
Q ss_pred HHcCCccccccce
Q 024935 164 KKLDDSEFRNAFS 176 (260)
Q Consensus 164 ~~l~~~~~~g~~~ 176 (260)
..+||..+.|+.+
T Consensus 133 ~~~ng~ll~~kki 145 (369)
T KOG0123|consen 133 EKLNGMLLNGKKI 145 (369)
T ss_pred HHhcCcccCCCee
Confidence 9999999999644
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.4e-22 Score=140.23 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=67.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
..+.|||+||+..+++.+|+.+|..||.+..|.|..+ +.+||||+|+++.+|..|+..|+|..|.|..+++++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3589999999999999999999999999999999984 5679999999999999999999999999965555554443
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=2.3e-22 Score=168.60 Aligned_cols=159 Identities=23% Similarity=0.412 Sum_probs=134.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CC----CCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+|||.||++.+|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|+..|+|+.|+|..|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999999933 22 245999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC----CCCCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~~~~~~~v~f~~~~ 157 (260)
..... .. +........++.|+|.|||..++..+|+++|..||.+..|.++.. ...|||||+|-++.
T Consensus 597 ~k~~~-~~---------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 597 NKPAS-TV---------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred Ccccc-cc---------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 21111 00 011123334789999999999999999999999999999999876 23469999999999
Q ss_pred HHHHHHHHcCCccccccce
Q 024935 158 DMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~ 176 (260)
+|..|+.+|....+.|+.+
T Consensus 667 ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred HHHHHHHhhcccceechhh
Confidence 9999999999999988654
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.5e-21 Score=135.90 Aligned_cols=78 Identities=50% Similarity=0.841 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
-.++|||+||+..+++.||..+|..||+|..|+|.. .+.|||||||+++.+|+.|+..|+|..|.|..|.|+++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 468999999999999999999999999999999954 458999999999999999999999999999999999987644
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.88 E-value=4.7e-21 Score=140.65 Aligned_cols=168 Identities=21% Similarity=0.326 Sum_probs=137.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~----~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.|+.||||.||+..+..++|+. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|++++|+|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4666999999999999999888 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC--------------C------CCCCCCC-------CC---CC-CCCCCCcceEEecCCCCCCCHHHHHHH
Q 024935 80 AHGGRGRSSS--------------D------RHSSHSS-------GR---GR-GVSRRSEYRVLVTGLPSSASWQDLKDH 128 (260)
Q Consensus 80 ~~~~~~~~~~--------------~------~~~~~~~-------~~---~~-~~~~~~~~~~~v~nl~~~~~~~~l~~~ 128 (260)
|......-.. . ......+ .. .. ....++...+++.|||..++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 9854321100 0 0000000 00 00 122467788999999999999999999
Q ss_pred HHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccc
Q 024935 129 MRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 129 f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
|.+|.....+.+..... +.|||+|.+...|..|...+.+..+.
T Consensus 167 f~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999988888876543 48999999999999999999988876
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.6e-21 Score=144.70 Aligned_cols=177 Identities=20% Similarity=0.305 Sum_probs=138.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCcc-C--CcEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF-D--GHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-~--g~~i~v~~ 79 (260)
..++||||.|.+.-.|+|++.+|..||+|.+|.+.. ++.++|+|||.|.+..+|..||..|||..- - ...|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 468899999999999999999999999999999954 788999999999999999999999999543 3 45789999
Q ss_pred ccCCC------------------------------------------------------------------------C--
Q 024935 80 AHGGR------------------------------------------------------------------------G-- 85 (260)
Q Consensus 80 ~~~~~------------------------------------------------------------------------~-- 85 (260)
+...+ .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 88000 0
Q ss_pred ---------CCCC------------------CCCCCCCCC----------------------------------------
Q 024935 86 ---------RSSS------------------DRHSSHSSG---------------------------------------- 98 (260)
Q Consensus 86 ---------~~~~------------------~~~~~~~~~---------------------------------------- 98 (260)
.++. ........+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0000 000000000
Q ss_pred ------------------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcCh
Q 024935 99 ------------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (260)
Q Consensus 99 ------------------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~ 156 (260)
.......+.+|+|||..||-+..+.||.++|-.||.|+..+++.+..+ -|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000112257899999999999999999999999999999999877543 3999999999
Q ss_pred hHHHHHHHHcCCccccccceeeEEe
Q 024935 157 DDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
..|+.||..|||..|+-+.++..++
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhc
Confidence 9999999999999998865554443
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=5.9e-21 Score=151.55 Aligned_cols=179 Identities=23% Similarity=0.351 Sum_probs=141.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCc-cC--CcEEEEEEc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVELA 80 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~--g~~i~v~~~ 80 (260)
.++|||+.|++.+||.+|+++|.+||.|++|.|.. ++.++|||||.|.+.|.|..|++.|||.. +. ..+|.|.|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 67899999999999999999999999999999955 57899999999999999999999999954 44 569999999
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 024935 81 HGGRGRSS------------------------------------------------------------------------ 88 (260)
Q Consensus 81 ~~~~~~~~------------------------------------------------------------------------ 88 (260)
...+....
T Consensus 204 Dtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~ 283 (510)
T KOG0144|consen 204 DTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAA 283 (510)
T ss_pred ccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhh
Confidence 81100000
Q ss_pred ----------CCC---------CC---C---------C------------------------C--CC-------------
Q 024935 89 ----------SDR---------HS---S---------H------------------------S--SG------------- 98 (260)
Q Consensus 89 ----------~~~---------~~---~---------~------------------------~--~~------------- 98 (260)
... .. . . . ++
T Consensus 284 ~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~ 363 (510)
T KOG0144|consen 284 ATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAAS 363 (510)
T ss_pred cccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccccc
Confidence 000 00 0 0 0 00
Q ss_pred ---------------------------------------------------CCCCCCCCCcceEEecCCCCCCCHHHHHH
Q 024935 99 ---------------------------------------------------RGRGVSRRSEYRVLVTGLPSSASWQDLKD 127 (260)
Q Consensus 99 ---------------------------------------------------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~ 127 (260)
.......+.+.++||.+||-+.-+.+|-.
T Consensus 364 ~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~ 443 (510)
T KOG0144|consen 364 LANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIA 443 (510)
T ss_pred ccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHH
Confidence 00111224667899999999999999999
Q ss_pred HHHhcCCccEEEEEeCCCCC----EEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 128 HMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 128 ~f~~~g~v~~~~~~~~~~~~----~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
.|..||.|+..+++.++.++ |+||.|++..+|+.||..|||..++.+.++..+....
T Consensus 444 ~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 444 TFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999998776 8999999999999999999999999987666555543
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=9.2e-20 Score=155.92 Aligned_cols=78 Identities=24% Similarity=0.483 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++|||+|||+++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|..||..||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 357899999999999999999999999999999954 46789999999999999999999999999999999999877
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 3
No 34
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=136.12 Aligned_cols=168 Identities=23% Similarity=0.380 Sum_probs=129.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCC----CceEEEEecChHHHHHHHHhCCCCccC---CcEEEEE
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVE 78 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~----~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~ 78 (260)
-+||||.+||.++...||..||..|--.+.+.|+.+++. +.+|||+|.+..+|.+|+++|||+.|+ +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999987888888776554 379999999999999999999999996 8899999
Q ss_pred EccCCCCCCCCCCCCCCCC----------------------------------C--------------------------
Q 024935 79 LAHGGRGRSSSDRHSSHSS----------------------------------G-------------------------- 98 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~----------------------------------~-------------------------- 98 (260)
+++...+.......+.... +
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 9985432211000000000 0
Q ss_pred -------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 99 -------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 99 -------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
...........+|||.||.++|++++|+++|+.|......++-.....-.||++|++.+.|..||..|.|..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 0000111234689999999999999999999999887766665444444899999999999999999999887
Q ss_pred cc
Q 024935 172 RN 173 (260)
Q Consensus 172 ~g 173 (260)
..
T Consensus 274 s~ 275 (284)
T KOG1457|consen 274 SS 275 (284)
T ss_pred cc
Confidence 53
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=8.4e-21 Score=155.16 Aligned_cols=176 Identities=21% Similarity=0.329 Sum_probs=130.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
|-..|||+||..++++++|+.+|++||.|..|.+.. +|..+||+||+|.+.++|.+|+..|||..|.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 444599999999999999999999999999999943 68999999999999999999999999999999999998776
Q ss_pred CCCCCCCC-CCCCC--------C---CCC------------------------------------C-----CCCCCC---
Q 024935 82 GGRGRSSS-DRHSS--------H---SSG------------------------------------R-----GRGVSR--- 105 (260)
Q Consensus 82 ~~~~~~~~-~~~~~--------~---~~~------------------------------------~-----~~~~~~--- 105 (260)
........ ..... . ..+ . ....+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 44333211 00000 0 000 0 000011
Q ss_pred ----CCcceEEecCC-CC------CC---CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 106 ----RSEYRVLVTGL-PS------SA---SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 106 ----~~~~~~~v~nl-~~------~~---~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
.+.-++.+.|+ ++ +| -.++|.+.+.+||+|+.|.+..+.. |+.||.|.+.+.|..|+..|||.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 11222233332 11 11 1567888999999999999887766 8999999999999999999999999
Q ss_pred cccceeeEEe
Q 024935 172 RNAFSRAYVR 181 (260)
Q Consensus 172 ~g~~~~~~~~ 181 (260)
.|+.+++.+.
T Consensus 516 ~gr~Ita~~~ 525 (549)
T KOG0147|consen 516 AGRMITAKYL 525 (549)
T ss_pred ccceeEEEEe
Confidence 9998875443
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6e-21 Score=142.91 Aligned_cols=132 Identities=25% Similarity=0.406 Sum_probs=110.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
|-+...+||||+||...+||+-|..||.++|.|+.++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 44567899999999999999999999999999999998743 4566666
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcCh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~ 156 (260)
..+..++. +.......+||+.|.+.++-++|++.|.+||+|.+++|+++.. +||+||.|.+.
T Consensus 49 ~~p~nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 49 TAPGNQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred cCcccCCC--------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 54422111 2223357899999999999999999999999999999999854 46999999999
Q ss_pred hHHHHHHHHcCCccccccceee
Q 024935 157 DDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
++|+.||..|||.+|+++.++.
T Consensus 115 ~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred HHHHHHHHHhCCeeeccceeec
Confidence 9999999999999999965443
No 37
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.1e-20 Score=152.71 Aligned_cols=160 Identities=26% Similarity=0.416 Sum_probs=135.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++...|||.||++.++..+|.++|+.||+|.+|++..+ ..++|| ||+|.+++.|.+|+..|||..+.|++|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 355566999999999999999999999999999999443 448999 999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhH
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDD 158 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~ 158 (260)
.......... ......+.++|.|++...+++.|.+.|..+|.+..+.++.+. +.+|+||.|+++++
T Consensus 152 ~~~er~~~~~-----------~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 152 RKEEREAPLG-----------EYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred chhhhccccc-----------chhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 5433211110 122334689999999999999999999999999999999874 34699999999999
Q ss_pred HHHHHHHcCCcccccc
Q 024935 159 MKHAIKKLDDSEFRNA 174 (260)
Q Consensus 159 a~~a~~~l~~~~~~g~ 174 (260)
|..|+..|++..+.+.
T Consensus 221 a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGDK 236 (369)
T ss_pred HHHHHHhccCCcCCcc
Confidence 9999999999999863
No 38
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.84 E-value=4e-20 Score=133.23 Aligned_cols=80 Identities=36% Similarity=0.613 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
...+|.|.||.+.++.++|+.+|++||.|-+|.|. .|.+++|||||.|.+..+|+.|+.+|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35689999999999999999999999999999994 478999999999999999999999999999999999999987
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 654
No 39
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.84 E-value=5.9e-21 Score=149.70 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=117.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC------CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
...|.|.||.+++|.++++.||..+|.|.++.|..+ ......|||.|.+...+..|.+ |.+++|-|+.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 348999999999999999999999999999999442 2345699999999999999999 777887777777765
Q ss_pred ccCCCCCCC---------CCCCCCCCCC--------------CC---CCCCC-----------CCcceEEecCCCCCCCH
Q 024935 80 AHGGRGRSS---------SDRHSSHSSG--------------RG---RGVSR-----------RSEYRVLVTGLPSSASW 122 (260)
Q Consensus 80 ~~~~~~~~~---------~~~~~~~~~~--------------~~---~~~~~-----------~~~~~~~v~nl~~~~~~ 122 (260)
......+.. ...+.....+ .. ..++. .-..+++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 543221100 0000000000 00 00000 01235888889999999
Q ss_pred HHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 123 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
.++.+.|..+|+|.+..+.......+|.++|........|+. ++|.++
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 999999999999999998887777789999988888888877 444444
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=4.9e-21 Score=156.51 Aligned_cols=171 Identities=22% Similarity=0.303 Sum_probs=139.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+..++||+--|+..+++.+|.+||+.+|.|.+|.++. +..++|.|||+|.+.+.+..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 4567889989999999999999999999999999954 56789999999999999999997 9999999999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcCh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~ 156 (260)
........ .. ......+....+...|||+||..++++.+|..+|+.||.|..|.+..+. .+|||||+|.+.
T Consensus 256 Eaeknr~a--~~---s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 256 EAEKNRAA--NA---SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred HHHHHHHH--hc---cccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 53322100 00 0000001112233339999999999999999999999999999998874 457999999999
Q ss_pred hHHHHHHHHcCCccccccceeeEE
Q 024935 157 DDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
++|..|+..|||.++.|+.++.-+
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEE
Confidence 999999999999999998876433
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.4e-19 Score=136.17 Aligned_cols=82 Identities=37% Similarity=0.666 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
++|-+||||+-|+++++|..|+..|+.||+|+.|.|+ .|++++|||||+|.++.+...|++..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 5788999999999999999999999999999999994 5799999999999999999999999999999999999998
Q ss_pred ccCCC
Q 024935 80 AHGGR 84 (260)
Q Consensus 80 ~~~~~ 84 (260)
.....
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 76544
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=6.9e-20 Score=130.82 Aligned_cols=81 Identities=26% Similarity=0.525 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+++|||+|||+.+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|+.||..||+..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 578999999999999999999999999999999953 57889999999999999999999999999999999999997
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6443
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=8.8e-20 Score=144.00 Aligned_cols=165 Identities=19% Similarity=0.347 Sum_probs=134.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
.....++|||++|+|.++++.|++.|.+||+|.+|.++. ++.++||+||+|.+++.+.++|. .....|+|+.|.+.
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 445789999999999999999999999999999999954 57889999999999999999988 66788999999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEc
Q 024935 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYT 154 (260)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~ 154 (260)
-+.+...+...... .....+||++||..++++++++.|.+||.|..+.++.+.. .+|+||.|.
T Consensus 81 ~av~r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 81 RAVSREDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred eccCcccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 88765543222211 1346899999999999999999999999999988887754 469999999
Q ss_pred ChhHHHHHHHHcCCccccccceeeEEe
Q 024935 155 NYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 155 ~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
..+.+..++. ..-..++|+.+.+...
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cccccceecc-cceeeecCceeeEeec
Confidence 9999888877 5556666654433333
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2e-19 Score=119.76 Aligned_cols=79 Identities=38% Similarity=0.601 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+.++||||+||+..++|++|.+||+.+|+|..|.| ..+..+.|||||+|...++|+.|+..++|+.++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999999 446778999999999999999999999999999999999997
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 64
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.79 E-value=1.4e-17 Score=129.16 Aligned_cols=179 Identities=21% Similarity=0.261 Sum_probs=138.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccE--------EEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
-++.|||.|||..+|.+++.++|++||.|.. |+| ...|..+|-|++.|...+++..|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4667999999999999999999999997643 444 335888999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCC-----------------CC--CCCCCCCCCCCCcceEEecCCCCC----CC-------HHH
Q 024935 75 LRVELAHGGRGRSSSDRHS-----------------SH--SSGRGRGVSRRSEYRVLVTGLPSS----AS-------WQD 124 (260)
Q Consensus 75 i~v~~~~~~~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~v~nl~~~----~~-------~~~ 124 (260)
|+|+-|+......-..... .. ......+.......+|.+.|+=.. .+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 9999988543221100000 00 000001112234567888876321 12 567
Q ss_pred HHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 125 l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
|.+.+.+||.|..|.|+...+.|-+.|.|.+.++|..|++.|+|.+++|+.+.+.+...
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 88889999999999999999999999999999999999999999999998888777654
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=131.99 Aligned_cols=167 Identities=16% Similarity=0.243 Sum_probs=138.4
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 6 SRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 6 ~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
++.|.|.||.. .+|++.|..+|+-||+|..|+|...+ +-.|+|+|.+...|+.|++.|+|..+.|++|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 68899999965 59999999999999999999996544 3689999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCC----------------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCE
Q 024935 85 GRSSSDRHSSHSSG----------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 148 (260)
Q Consensus 85 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 148 (260)
.+.+.+.....+-. .....--++..++++.|+|+.+++++|++.|...|.......+......+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 65554332221111 11122336678999999999999999999999999887776666666679
Q ss_pred EEEEEcChhHHHHHHHHcCCcccccc
Q 024935 149 GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 149 ~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
|++++++.|+|..|+-.+++..+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999998775
No 47
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.76 E-value=1.4e-17 Score=120.28 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+.....+.|.|.||.+.++.++|..+|++||.|.+|.|..+. ..|||||.|....+|+.|++.|+|..++|+.+++
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 444566899999999999999999999999999999999885 4579999999999999999999999999976644
Q ss_pred EE
Q 024935 179 YV 180 (260)
Q Consensus 179 ~~ 180 (260)
.+
T Consensus 88 q~ 89 (256)
T KOG4207|consen 88 QM 89 (256)
T ss_pred hh
Confidence 43
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=4.4e-17 Score=131.96 Aligned_cols=157 Identities=21% Similarity=0.283 Sum_probs=120.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
...|-+.+|||++|++||.++|+.|+ |..+.+..+ +...|-|||+|.+++++++|++ .+-..+..+.|.|..+....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 44578899999999999999999995 888888654 9999999999999999999999 88899999999998775433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccE-EEEEeC---CCCCEEEEEEcChhHHH
Q 024935 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---GSGTTGIVDYTNYDDMK 160 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~---~~~~~~~v~f~~~~~a~ 160 (260)
..-...... +........|-+.+||..|++++|.++|+..--+.. +.+..+ ..++-|||+|++.+.|+
T Consensus 88 ~d~~~~~~g--------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 88 ADWVMRPGG--------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccccccCCC--------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 211100000 011134568899999999999999999997765554 323333 45568999999999999
Q ss_pred HHHHHcCCccccc
Q 024935 161 HAIKKLDDSEFRN 173 (260)
Q Consensus 161 ~a~~~l~~~~~~g 173 (260)
.|+.. |...|+.
T Consensus 160 ~Al~r-hre~iGh 171 (510)
T KOG4211|consen 160 IALGR-HRENIGH 171 (510)
T ss_pred HHHHH-HHHhhcc
Confidence 99984 4445554
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=1.5e-16 Score=127.04 Aligned_cols=169 Identities=25% Similarity=0.357 Sum_probs=131.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHh-hcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~-~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.+.+||+|||+++.+++|++||. +.|+|..|.|.. .++++|+|.|||+++|.+++|++.||...+.|++|.|.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999997 779999999955 589999999999999999999999999999999999986552
Q ss_pred CCCC----------------------------------------CCC--CCCC------CCCCC----------------
Q 024935 83 GRGR----------------------------------------SSS--DRHS------SHSSG---------------- 98 (260)
Q Consensus 83 ~~~~----------------------------------------~~~--~~~~------~~~~~---------------- 98 (260)
.... ... +... ++...
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 1000 000 0000 00000
Q ss_pred --CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 99 --RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 99 --~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
.......+-...+||.||.+.+....|.+.|.-.|+|..+.+-.++ .+++|.++|.++-+|.+||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 0001123445679999999999999999999999999888887664 45799999999999999999999855544
Q ss_pred c
Q 024935 174 A 174 (260)
Q Consensus 174 ~ 174 (260)
.
T Consensus 284 ~ 284 (608)
T KOG4212|consen 284 R 284 (608)
T ss_pred c
Confidence 3
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.75 E-value=1.3e-17 Score=127.16 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=73.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 85 (260)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|+.||. |||..|.|+.|.|.++.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCCC
Confidence 5899999999999999999999999999999997776678999999999999999997 999999999999999875543
No 51
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=2.7e-17 Score=138.42 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=136.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
+..+.|+|+|||..+..++|.++|..||+|..+.|... ---|+|+|.++.+|..|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45688999999999999999999999999999966521 125999999999999999999999999999999988743
Q ss_pred CCC--CCCC------CCC----------CCCCC--CCCC-----------CCCCCcceEEecCCCCCCCHHHHHHHHHhc
Q 024935 84 RGR--SSSD------RHS----------SHSSG--RGRG-----------VSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (260)
Q Consensus 84 ~~~--~~~~------~~~----------~~~~~--~~~~-----------~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~ 132 (260)
... +... ... ..... .... ......+.|||.||+..++.++|...|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 322 1100 000 00000 0000 001223449999999999999999999999
Q ss_pred CCccEEEEEeCCCC-------CEEEEEEcChhHHHHHHHHcCCccccccceeeEEee
Q 024935 133 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 133 g~v~~~~~~~~~~~-------~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
|.|+.+.|.....+ |||||+|.+.++|+.|++.|+|..+.|+.+-+.+..
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999988766543 899999999999999999999999999876665555
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=2.7e-17 Score=140.62 Aligned_cols=127 Identities=21% Similarity=0.286 Sum_probs=99.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc--CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..++|||+||++++++++|+++|+.| |+|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.|+.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 67999999999999999999999999999999999976
Q ss_pred CCCCCCCCCC-CCCCC--------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCcc
Q 024935 83 GRGRSSSDRH-SSHSS--------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (260)
Q Consensus 83 ~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~ 136 (260)
.......... ..... ........+...+++++|+++.++...+.++|..+|.+.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5432110000 00000 001112234567899999999999999999999988754
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=9.6e-18 Score=105.73 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEE
Q 024935 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (260)
|||+|||+++|+++|+++|+.||.|..+.+.. ++..+++|||+|.+.++|+.|+..|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999944 577899999999999999999999999999999875
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=9.2e-17 Score=133.14 Aligned_cols=176 Identities=19% Similarity=0.328 Sum_probs=131.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..+.+||++||..++++++.+++..||+++...+.. ++.++||||.+|.++..+..|+..|||+.+.+..|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 356799999999999999999999999999999943 47899999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCC--C-CCCCCCC--CCCCCCCcceEEecCCCCCCC-------------HHHHHHHHHhcCCccEEEEEeC
Q 024935 82 GGRGRSSSDRH--S-SHSSGRG--RGVSRRSEYRVLVTGLPSSAS-------------WQDLKDHMRRAGDVCFSQVFRD 143 (260)
Q Consensus 82 ~~~~~~~~~~~--~-~~~~~~~--~~~~~~~~~~~~v~nl~~~~~-------------~~~l~~~f~~~g~v~~~~~~~~ 143 (260)
........... . ....... .+....+...|.+.| .++ .++|+..+.+||.|..|.+..+
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n---~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTN---VVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhh---cCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 76654443332 1 0000000 011122222232222 222 2445566779999999999877
Q ss_pred -C------CCCEEEEEEcChhHHHHHHHHcCCcccccccee-eEEeee
Q 024935 144 -G------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVR 183 (260)
Q Consensus 144 -~------~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~-~~~~~~ 183 (260)
. ..|..||+|.+.++++.|++.|+|.++.|+.+. .++.++
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 2 235799999999999999999999999998764 344333
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=8.1e-17 Score=103.31 Aligned_cols=78 Identities=37% Similarity=0.525 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
-+..|||.|||.++|.+++.+||++||.|.+|++=.+...+|.|||.|++..+|.+|+..|+|..+.++.+.|-+...
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 367899999999999999999999999999999977778899999999999999999999999999999999988764
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=119.12 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
...+|||+||++.+|+++|+++|+.||+|.+|.|..++...++|||+|.++++|+.|+. |+|..|.|++|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45899999999999999999999999999999998888888999999999999999997 99999999999999887544
Q ss_pred C
Q 024935 85 G 85 (260)
Q Consensus 85 ~ 85 (260)
.
T Consensus 83 ~ 83 (243)
T PLN03121 83 D 83 (243)
T ss_pred c
Confidence 3
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.3e-16 Score=118.19 Aligned_cols=79 Identities=41% Similarity=0.649 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|-|.||+.++++++|++||.+||.|..|.| +.||.++|||||.|.+.++|++||..|||.-++...|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999999999999999 558999999999999999999999999999999999999999
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
++
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=122.61 Aligned_cols=140 Identities=30% Similarity=0.518 Sum_probs=109.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.++|||+|||+.+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999843 578999999999999999999999999999999999999753
Q ss_pred --CCCCCCCC---CCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC
Q 024935 83 --GRGRSSSD---RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS 145 (260)
Q Consensus 83 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 145 (260)
........ ....................+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11110000 0000000111223445677899999999999999999999999996666655543
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=1.1e-15 Score=124.54 Aligned_cols=82 Identities=32% Similarity=0.520 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (260)
..++|||+|||+.+|+++|+++|++||+|+.+.|.. ++.++|||||+|.+.++|++||..||+..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999843 57788999999999999999999999998876 6899999
Q ss_pred ccCCCCC
Q 024935 80 AHGGRGR 86 (260)
Q Consensus 80 ~~~~~~~ 86 (260)
+......
T Consensus 272 a~~~~~~ 278 (346)
T TIGR01659 272 AEEHGKA 278 (346)
T ss_pred CCccccc
Confidence 8865443
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=2.5e-16 Score=99.12 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEE
Q 024935 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (260)
|||+|||+.+++++|.++|+.||.|..+.+.. ++..+++|||+|.++++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999943 356789999999999999999999999999999874
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=3.8e-16 Score=123.68 Aligned_cols=176 Identities=17% Similarity=0.238 Sum_probs=133.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC--ccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~ 80 (260)
..|++.|.++|||++++|+||.+++.+||.|..+.+. +.+..|||+|.+.++|..-+..+... .+.|++|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~l---kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLML---KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeee---ccchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 3589999999999999999999999999999999886 34569999999999988755544432 456899999987
Q ss_pred cCCCCCCCCCC-------------------CCCCCCCC--CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEE
Q 024935 81 HGGRGRSSSDR-------------------HSSHSSGR--GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 139 (260)
Q Consensus 81 ~~~~~~~~~~~-------------------~~~~~~~~--~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~ 139 (260)
....-...... ........ +......+-..++|+|+-+.++.+-|.++|++||.|..+.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 63221111000 00000000 1112223446788899999999999999999999999999
Q ss_pred EEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 140 ~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.+...++..|.|+|.+.+.|+.|...|+|..|.+..+...|.
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 998888878999999999999999999999887755544444
No 62
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.7e-17 Score=117.44 Aligned_cols=83 Identities=28% Similarity=0.531 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++.-|||||||..+||.+|.-.|++||+|++|.| ..||.++||||+.|+++.+...|+..|||..|.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35678999999999999999999999999999999 458999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 024935 81 HGGRGR 86 (260)
Q Consensus 81 ~~~~~~ 86 (260)
.....+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 766554
No 63
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=4.8e-16 Score=104.68 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.-.|||.++...+|+++|.+.|..||+|+.|.|+ .++-.+|||+|+|.+.++|++|+..|||..+.|+.|.|.|+--
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4579999999999999999999999999999994 4688899999999999999999999999999999999999864
Q ss_pred CC
Q 024935 83 GR 84 (260)
Q Consensus 83 ~~ 84 (260)
..
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 43
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=3e-15 Score=110.62 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
++||||+|+|.++.+.|+++|++||+|++..+ +.++.++||+||+|.+.++|..|+. -.+-.|+|++..|.++.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhhc
Confidence 67999999999999999999999999999888 4578999999999999999999999 4456889999999998763
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 92 ~ 92 (247)
T KOG0149|consen 92 G 92 (247)
T ss_pred C
Confidence 3
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=117.28 Aligned_cols=80 Identities=24% Similarity=0.473 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
...+.|+|.|||...-+.||+..|++||.|.+|.|+. +..++||+||+|+++++|++|-.+|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4567899999999999999999999999999999954 577899999999999999999999999999999999999875
Q ss_pred C
Q 024935 83 G 83 (260)
Q Consensus 83 ~ 83 (260)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-14 Score=112.96 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
-+.|||..+.++++++||+..|+.||+|..|.+.. ...++||+||+|.+..+-..|+..||=+.+.|+.|.|.-+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 36799999999999999999999999999999933 46789999999999999999999999999999999997655
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.61 E-value=2.6e-15 Score=121.83 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecCh--HHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
....+||||||++.+++++|..+|..||.|..|.|+.... +|||||+|... .++.+||..|||..|.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3567899999999999999999999999999999975433 99999999987 68999999999999999999999988
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.3e-16 Score=121.92 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
-|.|.|||..|.+-+|+++|..+|+.||.|..|.++ .++.+..||||+|.+.++|++|+..|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 488999999999999999999999999999999994 57889999999999999999999999999999999999998
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
..-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 7543
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=5.6e-15 Score=93.22 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
+|||+|||+.+++++|+++|..||+|..+.+..+ +.+.++|||+|.+.++|+.|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999988543 567899999999999999999999999999998886
No 70
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=5.8e-14 Score=100.35 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=65.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.....++|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.|+.+.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456799999999999999999999999999999998775 357999999999999999999999999995433
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.5e-14 Score=106.91 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
....+-++|||.-|++.+++.+|+..|..||.|..+.++.+. +.|||||+|++..++..|.+..+|..|+|+.+-+
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 334677899999999999999999999999999999999884 4579999999999999999999999999965433
No 72
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=1.2e-13 Score=108.49 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=135.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
-+.+.+.|.+|.. .++.+-|..+|..||.|..|+++++. .|.|.|++.+..+.+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4678899999975 58899999999999999999997665 67999999999999999999999999999999999885
Q ss_pred CCCCCCC--------CCCCCCCCC----------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC-ccEEEEEeC
Q 024935 83 GRGRSSS--------DRHSSHSSG----------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 143 (260)
Q Consensus 83 ~~~~~~~--------~~~~~~~~~----------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~ 143 (260)
.-..+.. .....+... .....-..+...|+.-|.|..+|++.|.++|...+. ...++++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 4332210 000011110 111223467789999999999999999999988773 456777655
Q ss_pred CCC--CEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 144 GSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 144 ~~~--~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
... ..+.++|++.++|.+|+..+|...+.+.....
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~ 479 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSF 479 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCC
Confidence 433 37899999999999999999999998865543
No 73
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.5e-15 Score=108.94 Aligned_cols=82 Identities=35% Similarity=0.629 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++||||+|...+++.-|...|-+||.|.+|.++. +.+++|||||+|...|+|.+||..||+..+.|+.|.|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 458999999999999999999999999999999954 57889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024935 82 GGRGR 86 (260)
Q Consensus 82 ~~~~~ 86 (260)
+....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 76543
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=2.1e-13 Score=109.25 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
--+++||.||...+..+.|.+.|.-.|.|..|.+ .+.+.++|+|.|+|..+-.|..||.+|++.-+..++..+..
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 3468999999999999999999999999998888 45678899999999999999999999998776666666665
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.53 E-value=4e-14 Score=84.69 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=50.7
Q ss_pred HHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 23 l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999996443 589999999999999999999999999999999986
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.2e-14 Score=88.39 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=61.7
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 11 v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
|+|||..+++++|+++|+.||.|..+.+.. ++.++|+|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 679999999999999999999999999943 4667899999999999999999999999999999887
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=9.1e-14 Score=88.06 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCC--CCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
+|+|+|||+.+++++|.++|+.||.|..+.+.... .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999995432 4589999999999999999999999999999998864
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=6.7e-14 Score=87.98 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=60.3
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
|||+|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|+.|++.|+|..+.|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 7999999999999999999999999999999862 33599999999999999999999999999644
No 79
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1.6e-13 Score=113.52 Aligned_cols=78 Identities=33% Similarity=0.672 Sum_probs=73.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
+.|||||||+.+++++|.++|+..|.|.+++++. +|.++||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999954 5889999999999999999999999999999999999998854
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 80
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3e-12 Score=104.94 Aligned_cols=165 Identities=21% Similarity=0.300 Sum_probs=112.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-----CCCCCc---eEEEEecChHHHHHHHHhCCCCccCCcEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-----PPRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-----~~~~~g---~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (260)
=+++||||+||+.++|++|...|..||.+..-+-.. --.++| |+|+.|+++..+...|.++.- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 468899999999999999999999999764322211 012355 999999999999887775433 222222
Q ss_pred EEEccCCCCCCCCCCCCCCCCC----CCCCCCCCCcceEEecCCCCCCCHHHHHHHHH-hcCCccEEEEEeCC----CCC
Q 024935 77 VELAHGGRGRSSSDRHSSHSSG----RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDG----SGT 147 (260)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~----~~~ 147 (260)
+..+....+.....-.+..... ......-.+..+|||++||-.++.++|..+|. -||.|+++-|-.++ +.|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 2222222111110000000000 11223445678999999999999999999998 89999999998884 346
Q ss_pred EEEEEEcChhHHHHHHHH----cCCcccc
Q 024935 148 TGIVDYTNYDDMKHAIKK----LDDSEFR 172 (260)
Q Consensus 148 ~~~v~f~~~~~a~~a~~~----l~~~~~~ 172 (260)
.|-|+|.+...-.+||.+ |+..++.
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccc
Confidence 799999999999999986 4555544
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=104.23 Aligned_cols=76 Identities=41% Similarity=0.697 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|+|+||.+.++.+||++.|++||+|.+|.|. ++|+||.|.-.++|..|+..|+|.+|.|++++|+.+...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 488999999999999999999999999999999998 789999999999999999999999999999999998754
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 4
No 82
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3e-13 Score=108.64 Aligned_cols=76 Identities=32% Similarity=0.569 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (260)
..|||.||+.++|++.|+++|+.||.|..|+.. +-||||.|.+.++|.+|++.+||..|+|..|.|.+|++..+.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 579999999999999999999999999999877 559999999999999999999999999999999999987654
Q ss_pred C
Q 024935 87 S 87 (260)
Q Consensus 87 ~ 87 (260)
.
T Consensus 335 k 335 (506)
T KOG0117|consen 335 K 335 (506)
T ss_pred c
Confidence 3
No 83
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.42 E-value=5.8e-13 Score=113.68 Aligned_cols=78 Identities=31% Similarity=0.573 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
-++|||||.|+.++++.+|..+|+.||+|.+|.++ .+++||||.+....+|.+|+.+|++..+.++.|+|.|+.+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 47899999999999999999999999999999997 568999999999999999999999999999999999998755
Q ss_pred C
Q 024935 85 G 85 (260)
Q Consensus 85 ~ 85 (260)
.
T Consensus 497 ~ 497 (894)
T KOG0132|consen 497 P 497 (894)
T ss_pred c
Confidence 4
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=2.1e-12 Score=98.89 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=64.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC-CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
..+|||+|||+.+++++|+++|+.||+|..|.+..+. ..+||||+|++.++|..|+. |||..+.|+.+....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEe
Confidence 3689999999999999999999999999999998876 46899999999999999995 999999996554433
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.8e-12 Score=86.68 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=71.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
..++.|||.++.+.+++++|.+.|..||+|.++++..+..+ |||+|+|++.++|+.|+..+||..+.|+.+.....
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45789999999999999999999999999999999888654 58999999999999999999999999987766665
Q ss_pred eeccc
Q 024935 182 VREYD 186 (260)
Q Consensus 182 ~~~~~ 186 (260)
.-...
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 55443
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=1.8e-12 Score=81.42 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=58.1
Q ss_pred EEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
|+|+|||+.+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..+.|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 68999999999999999999999999999998864 459999999999999999999999999854
No 87
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=1.9e-12 Score=81.04 Aligned_cols=58 Identities=26% Similarity=0.557 Sum_probs=51.6
Q ss_pred HHHHHHHHh----hcCCccEEE-e---cCC--CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 20 EREVEDLFY----KYGPIAHID-L---KIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 20 ~~~l~~~F~----~~G~v~~~~-~---~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
+++|+++|. .||.|..|. + ..+ +.++|||||+|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999999985 4 223 778999999999999999999999999999999876
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=7.5e-12 Score=89.31 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=68.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeecc
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (260)
..+.|||+|||..+-+.+|+++|-+||.|..|.+...+. ..||||+|+++.+|+.||..-+|..++| +.++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 347899999999999999999999999999999876544 4599999999999999999999999999 66666666
Q ss_pred cCCC
Q 024935 186 DHRR 189 (260)
Q Consensus 186 ~~~r 189 (260)
+..+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 5554
No 89
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.36 E-value=1.6e-11 Score=96.79 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=123.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHh--CCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--l~~~~~~g~~i~v~~~~~ 82 (260)
++-.|.|.+|-..+++.+|.+.++.||+|..+.+. ..+..|.|+|++.+.|+.+++. -+...+.|+.-.+.++..
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~---P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM---PHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEec---cccceeeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 56789999999999999999999999999998884 2356899999999999999874 234667788877777754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEe--cCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHH
Q 024935 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~ 160 (260)
.....+. .....++..|.+ -|--+.+|.+.|-.++...|+|..|.|++. ++-.|.|+|++.+.|+
T Consensus 107 q~i~R~g------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 107 QCIERPG------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred hhhccCC------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHH
Confidence 4322111 112223334444 455567899999999999999999999987 5558999999999999
Q ss_pred HHHHHcCCccccccceeeEE
Q 024935 161 HAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~~~ 180 (260)
+|.+.|||..|..-.++.+|
T Consensus 174 rAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred HHHhhcccccccccceeEEE
Confidence 99999999988764443333
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=6.2e-12 Score=104.78 Aligned_cols=171 Identities=21% Similarity=0.326 Sum_probs=132.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc-----------C-CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
.-...++|+++|+.++++.+..+|..- | .|..+.+. ..++||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 445679999999999999999999754 2 35555554 457899999999999999999 9999999
Q ss_pred CcEEEEEEccCCCCCCCCCCCC----CCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC--
Q 024935 72 GHRLRVELAHGGRGRSSSDRHS----SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-- 145 (260)
Q Consensus 72 g~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-- 145 (260)
|.++++.-.....+.+...... .................++|++||..+++.++.|+...||.+....+..+..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9998886554443332221111 1111222223345667899999999999999999999999998877776644
Q ss_pred --CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 146 --GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 146 --~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
++|||.+|.++.....|+..|||+.+++..+.+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 469999999999999999999999999865543
No 91
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=96.07 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC--CCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
......|+|.|||...-+.||+.+|.+||.|++|+|+.+. .+|||||+|++.++|.+|.++|||..+.|+++
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3455789999999999999999999999999999999874 56899999999999999999999999999544
No 92
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.6e-12 Score=84.89 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=64.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
...++|||+||...+++++|.++|..+|+|..|.+-.+..+ |||||+|...++|..|++.+++..++.++++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 35689999999999999999999999999999888776544 6999999999999999999999999995443
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=9.6e-12 Score=98.30 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=113.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc----CCccEEEe-c-CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKY----GPIAHIDL-K-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~----G~v~~~~~-~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
-.|-+.+||.++++.|+.++|.+- |.+..|-+ . .++...|-|||.|..+++|+.||. -|...++-+.|.+.-+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 346678999999999999999632 23444544 3 378899999999999999999998 4555555444444322
Q ss_pred cCC--------CCCCC---CCCCCCCCC-CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC-ccE--EEEEeCCC
Q 024935 81 HGG--------RGRSS---SDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDGS 145 (260)
Q Consensus 81 ~~~--------~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~--~~~~~~~~ 145 (260)
... ....+ ....+.... .....+.......|-+.+||+.++.++|-++|..|.. |.. |++..+..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 200 00000 000000110 1112233344668899999999999999999998874 333 67766643
Q ss_pred ---CCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 146 ---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 146 ---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
.|-|||+|.+.+.|..|+.+.+++....+.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 368999999999999999999988886643
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=1.2e-11 Score=100.95 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=64.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcCh--hHHHHHHHHcCCccccccce
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~--~~a~~a~~~l~~~~~~g~~~ 176 (260)
....|||+||++.+++++|...|..||.|..|.|+.....|||||+|... .++.+||..|||.++.|+.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 45799999999999999999999999999999999887788999999987 78999999999999999543
No 95
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=7.8e-13 Score=96.77 Aligned_cols=140 Identities=20% Similarity=0.282 Sum_probs=112.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..+||||+|+...++++-|.++|-+-|+|..|.|.. ++..+ ||||.|.++..+.-|+..|||..+.+..|+|.+-.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 457999999999999999999999999999999943 45556 999999999999999999999999999999876433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHH
Q 024935 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDM 159 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a 159 (260)
..- .-|...++.+.+.+.|...|.+..+.+..+.. ..++|+.+......
T Consensus 87 ~sh----------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 87 NSH----------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CCc----------------------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 211 01455567888888888999888887776544 34788888887777
Q ss_pred HHHHHHcCCccccc
Q 024935 160 KHAIKKLDDSEFRN 173 (260)
Q Consensus 160 ~~a~~~l~~~~~~g 173 (260)
-.++....+.+..-
T Consensus 139 P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 139 PFALDLYQGLELFQ 152 (267)
T ss_pred cHHhhhhcccCcCC
Confidence 78888777765543
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=3.3e-11 Score=77.75 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
++.....|||.|||..+|.+++-++|.+||.|..+.+-.... .|.|||.|++..+|..|+.+|+|..+.+..+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 334556899999999999999999999999999999976654 4799999999999999999999999999433
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=3.5e-11 Score=75.54 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=59.8
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC--CCCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
+|+|.|||..++.++|.++|.+||.+..+.+..+. ..++|||+|.+.++|+.|+..+++..+.|..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 48999999999999999999999999999888765 4479999999999999999999999998843
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=3.5e-11 Score=90.79 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=62.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
.+.+|+|+||++.+++++|+++|+.||+|..|.+..+.. +++|||+|+++++|..|+. |+|..|.+..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I 73 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRV 73 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceE
Confidence 357999999999999999999999999999999998854 3599999999999999995 99999999643
No 99
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=3.7e-12 Score=110.49 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=127.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC--CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.+.+||++||+..+++.+|+..|..+|.|..|.|+.+ +....||||.|.+...+-.|...+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 56889999999999999999999999999999999543 4456699999999999999998899887765555554432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHH
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~ 161 (260)
. .....+.+++++|++-+....|...|..||.|..|.+-+... ||+|.|++...|+.
T Consensus 450 ~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 450 P---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQA 506 (975)
T ss_pred c---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchh
Confidence 1 223457899999999999999999999999999887765544 99999999999999
Q ss_pred HHHHcCCcccccccee
Q 024935 162 AIKKLDDSEFRNAFSR 177 (260)
Q Consensus 162 a~~~l~~~~~~g~~~~ 177 (260)
|+..|.|..+++....
T Consensus 507 a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRR 522 (975)
T ss_pred hHHHHhcCcCCCCCcc
Confidence 9999999999986543
No 100
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.9e-11 Score=88.16 Aligned_cols=80 Identities=26% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
.....++|-|.||+.++++.+|+++|.+||.|..+.+..+..+ |||||.|.+.++|++||+.|||.-+++ ..
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EE
Confidence 3456678999999999999999999999999999999998765 599999999999999999999999988 45
Q ss_pred EeeecccC
Q 024935 180 VRVREYDH 187 (260)
Q Consensus 180 ~~~~~~~~ 187 (260)
+.++..++
T Consensus 261 LrvEwskP 268 (270)
T KOG0122|consen 261 LRVEWSKP 268 (270)
T ss_pred EEEEecCC
Confidence 55554443
No 101
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=8e-12 Score=94.23 Aligned_cols=81 Identities=22% Similarity=0.486 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
-+.|+|||..||-+.++.||.+.|-+||.|++.++.. |.+++.|+||.|.++.+|+.||..|||..|.=+.|+|.+-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4679999999999999999999999999999998843 6889999999999999999999999999999999999876
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
.++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 5543
No 102
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=87.77 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-CCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
....+||..||.-+.+.+|..+|.+| |.|..+.+ ..||.++|||||+|++++.|.-|-+.||+..|.|+.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568999999999999999999999 78888888 569999999999999999999999999999999999999998
Q ss_pred cCC
Q 024935 81 HGG 83 (260)
Q Consensus 81 ~~~ 83 (260)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 103
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.3e-11 Score=94.20 Aligned_cols=77 Identities=31% Similarity=0.584 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHh-CCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-l~~~~~~g~~i~v~~~~ 81 (260)
+....+|||++|...+++.+|+++|.+||+|..|.+. ...++|||+|.+.++|+.|... +|...|+|+.|+|.|..
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3556899999999999999999999999999999996 3467999999999999997665 56677899999999987
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 104
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=4.6e-11 Score=85.17 Aligned_cols=80 Identities=21% Similarity=0.399 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccE----EEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH----IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~----~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
-+..|||+||.+++++..|.+.|+.||.+.. +....++.++|||||.|.+.+.+.+|+..|||..+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3467999999999999999999999998765 222456888999999999999999999999999999999999998
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
....
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 7544
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=1.5e-10 Score=72.33 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=57.2
Q ss_pred ecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
|.|||..+++++|.++|.+||.|..+.+..... .++|||+|.+.++|..|+..+++..+.|+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 578999999999999999999999999988754 569999999999999999999999998854
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=3e-10 Score=71.63 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=60.9
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
+|+|.|||..+++++|.++|..+|.+..+.+..... .++|||+|.+.++|..|+..+++..+.|..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 478999999999999999999999999999998764 5799999999999999999999999888543
No 107
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=85.60 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
..-++|||++|+..+..+.|+.+|++||+|+.+.|+.+.. +|||||+|.+.+.|.+|++.. +-.|+|+...|.+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 3457899999999999999999999999999999998864 469999999999999999854 45577877666665
Q ss_pred ee
Q 024935 182 VR 183 (260)
Q Consensus 182 ~~ 183 (260)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.6e-10 Score=89.45 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=68.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCC----EEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
..++...|||-.|.+-++.++|.-+|+.||.|..|.|+.+..+| ||||+|++.+++++|.=+|++..|..+.++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34678899999999999999999999999999999999998776 999999999999999999999999986554
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=5.5e-10 Score=66.62 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=46.4
Q ss_pred HHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 125 l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
|.++|++||+|..+.+.... +++|||+|.+.++|..|+..||+..+.|+.+..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 67899999999999998776 679999999999999999999999999965443
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.08 E-value=3.7e-09 Score=86.59 Aligned_cols=167 Identities=22% Similarity=0.257 Sum_probs=112.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccE-EEec--CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~-~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.-+|-|.+||+.||++||.++|+-+-.|.. |.|. .-+.+.|-|||+|++++.|+.||. -|...|..+-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4567999999999999999999998755554 3343 346688999999999999999998 67788888888887544
Q ss_pred CC---------CC----CCCCCC-----C---------------------------------------CCCCCC--CCCC
Q 024935 82 GG---------RG----RSSSDR-----H---------------------------------------SSHSSG--RGRG 102 (260)
Q Consensus 82 ~~---------~~----~~~~~~-----~---------------------------------------~~~~~~--~~~~ 102 (260)
.. .. +.+... . ...... ....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 00 00 000000 0 000000 0000
Q ss_pred C---------------CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC---CCCCEEEEEEcChhHHHHHHH
Q 024935 103 V---------------SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDDMKHAIK 164 (260)
Q Consensus 103 ~---------------~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~~~~~v~f~~~~~a~~a~~ 164 (260)
. ....+..++..+||+..+..+|..+|+..-.+ .|+|--. ..++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 00122567778999999999999999876554 4444433 344689999999999999998
Q ss_pred HcCCcccccc
Q 024935 165 KLDDSEFRNA 174 (260)
Q Consensus 165 ~l~~~~~~g~ 174 (260)
+ ++..+...
T Consensus 340 k-d~anm~hr 348 (510)
T KOG4211|consen 340 K-DGANMGHR 348 (510)
T ss_pred c-CCcccCcc
Confidence 4 45555543
No 111
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.07 E-value=7.8e-10 Score=84.56 Aligned_cols=79 Identities=27% Similarity=0.513 Sum_probs=71.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
+.+|+|.|||..+++++|++||..||+++.+.+++ .+.+.|.|-|.|...++|..|++.+||..++|.+|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 46799999999999999999999999888888855 5888999999999999999999999999999999999887654
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=4e-10 Score=93.67 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=71.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.++|||.+|...+-..+|+.||++||.|+..+++. +...+.|+||+|.+.++|.++|..||.+.|+|+.|.|+-+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46799999999999999999999999999999954 455678999999999999999999999999999999999885
Q ss_pred CC
Q 024935 83 GR 84 (260)
Q Consensus 83 ~~ 84 (260)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.3e-10 Score=94.90 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=101.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
+-++.+|+|.|||..++.++|..+|+.||+|+.|+. +....|.+||+|.|..+|+.|+++|++..+.|+.|+......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 346789999999999999999999999999999655 345588999999999999999999999999999988211110
Q ss_pred CCCCCCCCC--CCCCCCCC-CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHH
Q 024935 83 GRGRSSSDR--HSSHSSGR-GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (260)
Q Consensus 83 ~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a 159 (260)
......... ........ ...+..-....+ ++.|++..+..-++..+.-+|.+.. ...... ...-|++|.+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-~hq~~~~~~~~~s~ 226 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RETPLL-NHQRFVEFADNRSY 226 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccccch-hhhhhhhhccccch
Confidence 000000000 00000000 000000001122 2238888877666666777776554 111110 11456788888877
Q ss_pred HHHHHHcCCccccc
Q 024935 160 KHAIKKLDDSEFRN 173 (260)
Q Consensus 160 ~~a~~~l~~~~~~g 173 (260)
..+.... |..+.+
T Consensus 227 a~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 227 AFSEPRG-GFLISN 239 (549)
T ss_pred hhcccCC-ceecCC
Confidence 5554422 444443
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.7e-10 Score=82.94 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=65.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+|||++|...+++.-|...|-+||.|..|.++.+. ..+||||+|+..++|..||..||+.++.|+.++..
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34689999999999999999999999999999998773 45799999999999999999999999999554433
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=3.4e-11 Score=104.17 Aligned_cols=137 Identities=25% Similarity=0.345 Sum_probs=113.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+..+++||.||++.+.+.+|...|..+|.+..+.+ +..+..+|+||++|..++++.+||.... ..+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhhh-------
Confidence 34568999999999999999999999998877777 3467889999999999999999999444 444442
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC---CCCCEEEEEEcChh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYD 157 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~~~~~v~f~~~~ 157 (260)
..++|.|+|+..|.++++.++..+|.+....+... .+.|.|+|.|.+..
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 35789999999999999999999999988766544 45679999999999
Q ss_pred HHHHHHHHcCCccccccce
Q 024935 158 DMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~ 176 (260)
++..++...+...+.-..+
T Consensus 789 ~~s~~~~s~d~~~~rE~~~ 807 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRENNG 807 (881)
T ss_pred hhhhhcccchhhhhhhcCc
Confidence 9999998887766655433
No 116
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=1.3e-10 Score=93.24 Aligned_cols=145 Identities=23% Similarity=0.401 Sum_probs=116.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc--CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC-ccCCcEEEEEEccCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-DFDGHRLRVELAHGG 83 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~-~~~g~~i~v~~~~~~ 83 (260)
+.||++||.+.++..+|..+|... |--..+.++ .|||||.+.+...|.+|++.++|. .+.|..+.|.++...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 579999999999999999999744 222233333 689999999999999999999994 678999999887643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC-CCCCEEEEEEcChhHHHHH
Q 024935 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHA 162 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~v~f~~~~~a~~a 162 (260)
.. ....+-|.|+|+...++.|..++.+||.+..|..... ..+...-|+|...+.+..|
T Consensus 77 kq---------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 77 KQ---------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred HH---------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 32 2235778999999999999999999999988776433 3333445788899999999
Q ss_pred HHHcCCcccccccee
Q 024935 163 IKKLDDSEFRNAFSR 177 (260)
Q Consensus 163 ~~~l~~~~~~g~~~~ 177 (260)
+.+|+|..+.+....
T Consensus 136 i~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 136 IHKLNGPQLENQHLK 150 (584)
T ss_pred HHhhcchHhhhhhhh
Confidence 999999999886543
No 117
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=5.9e-11 Score=84.55 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=66.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
..-|||+|||+..|+.+|...|++||.|++|.++.+..+ ||||+.|++.....-|+..|||..|.|+.++....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 357999999999999999999999999999999998655 59999999999999999999999999976654433
No 118
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.99 E-value=9.9e-10 Score=93.48 Aligned_cols=77 Identities=27% Similarity=0.471 Sum_probs=70.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC------CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
+++|||+||++.++++.|...|+.||+|..++|++. .....++||.|-+-.+|+.|+..|+|..+.+..+++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 567999999999999999999999999999999653 24467999999999999999999999999999999999
Q ss_pred ccC
Q 024935 80 AHG 82 (260)
Q Consensus 80 ~~~ 82 (260)
.+.
T Consensus 254 gk~ 256 (877)
T KOG0151|consen 254 GKA 256 (877)
T ss_pred ccc
Confidence 864
No 119
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=1e-09 Score=87.26 Aligned_cols=82 Identities=26% Similarity=0.543 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+.+|||++||.++++.+|++.|.+||.|..+.++. +..++||+||+|.+++.+.+++. ...+.|+|+.+.|.-|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 356899999999999999999999999888888744 46789999999999999999998 88899999999999988
Q ss_pred CCCCCC
Q 024935 82 GGRGRS 87 (260)
Q Consensus 82 ~~~~~~ 87 (260)
+.....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 765443
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=3.4e-09 Score=66.21 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=46.3
Q ss_pred HHHHHHHHH----hcCCccEEE-EEeC------CCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 122 WQDLKDHMR----RAGDVCFSQ-VFRD------GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 122 ~~~l~~~f~----~~g~v~~~~-~~~~------~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
+++|.++|. +||.|..+. +..+ ...|||||+|.+.++|..|+..|||..+.|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 467888888 999999885 4433 2357999999999999999999999999996543
No 121
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.94 E-value=8.2e-09 Score=67.69 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=62.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc--CCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccC----CcEEEE
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~i~v 77 (260)
+||.|.|||...|.++|.+++... |...-+.++ .+..+.|||||-|.+++.|......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988754 555555553 35778999999999999999999999998885 556677
Q ss_pred EEccC
Q 024935 78 ELAHG 82 (260)
Q Consensus 78 ~~~~~ 82 (260)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77653
No 122
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.94 E-value=2.3e-09 Score=88.57 Aligned_cols=74 Identities=32% Similarity=0.596 Sum_probs=64.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec-C--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK-I--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~-~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+|||+|||.++++++|.++|..||+|+...|. . .+...+||||+|.+.+.++.||. .+-..++++++.|+--.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 459999999999999999999999999998882 2 24444899999999999999999 56889999999998754
No 123
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=2.4e-09 Score=82.14 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+...+||+|+...+|.+++..+|+.||.|..+.+.. .++++|||||+|.+.+.+..||. |++..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678899999999999999999999999998777733 46789999999999999999999 9999999999999887
Q ss_pred cCC
Q 024935 81 HGG 83 (260)
Q Consensus 81 ~~~ 83 (260)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 644
No 124
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.89 E-value=4.3e-09 Score=87.53 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=65.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
..+||+|+|+++++++|.++|...|.|..+++..+..+ ||||++|.+.++|..|++.|||.++.|+.+.+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 78999999999999999999999999999999988654 5999999999999999999999999996544433
No 125
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=1e-08 Score=82.24 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=65.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
..+|||+|||..+++++|.++|..||.+..+.+..+. ..|+|||+|.+.++|..|+..+++..+.|+.+....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 5899999999999999999999999999998888774 447999999999999999999999999996554433
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.87 E-value=5.3e-09 Score=82.99 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=119.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCC-CccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~ 80 (260)
..+++|++++..++.+.++..+|..+|.+....+ .....++++++|.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4678999999999999999999999998877776 2356779999999999999999999 555 4555655554444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEE-ecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcC
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTN 155 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~ 155 (260)
...... ..............+++ |.+|+..++.++|..+|..+|.|..+.+...... ++|+|.|..
T Consensus 166 ~~~~~~---------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 166 TRRGLR---------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccc---------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 332210 00111111222233444 9999999999999999999999999999887655 489999999
Q ss_pred hhHHHHHHHHcCCccccc
Q 024935 156 YDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g 173 (260)
...+..++.. +...+.+
T Consensus 237 ~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGG 253 (285)
T ss_pred chhHHHHhhc-ccCcccC
Confidence 9999999987 7777777
No 127
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.82 E-value=3.2e-08 Score=61.73 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.8
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhhcC-CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 7 RTLYVGNLPGDIRERE----VEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~----l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..|+|.|||.+.+... |++|+..|| .|..| . .+.|+|.|.+++.|..|.+.|+|..+.|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998776 556777886 55554 2 4799999999999999999999999999999999986
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 544
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.73 E-value=2.8e-07 Score=73.56 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=106.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCcc---EEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA---HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~---~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
..+..|-..+|||..++.+|-.+|.-.-... .+-+.-.+...|.|.|.|.++|.-+.|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 4566778899999999999999997442111 12223345667899999999999999999 6777788899998766
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHh---c-CC---ccEEEEEeCCCCCEEEEEE
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR---A-GD---VCFSQVFRDGSGTTGIVDY 153 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~---~-g~---v~~~~~~~~~~~~~~~v~f 153 (260)
............. .....-..+.....|-+.+||++++..++.++|.. . |. |..|.-..+..+|-|||.|
T Consensus 137 ~ge~f~~iagg~s---~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 137 TGEEFLKIAGGTS---NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred CchhheEecCCcc---ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 5433211100000 00000111222345667799999999999999962 2 22 3334434445668999999
Q ss_pred cChhHHHHHHHH
Q 024935 154 TNYDDMKHAIKK 165 (260)
Q Consensus 154 ~~~~~a~~a~~~ 165 (260)
..+++|+.|+.+
T Consensus 214 a~ee~aq~aL~k 225 (508)
T KOG1365|consen 214 ACEEDAQFALRK 225 (508)
T ss_pred cCHHHHHHHHHH
Confidence 999999999985
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=5.4e-09 Score=83.23 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=53.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
++|+|++|+..+-..++.++|..+|+|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6799999999999999999999999998877732 2334588899999999999999 7777766
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.66 E-value=2.5e-08 Score=73.74 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=56.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (260)
+.-.||||.||.+++||++|+.+|+.|....-++|..-+. ...||++|.+.+.|..|+..|+|..+
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 4456899999999999999999999998777777743333 45999999999999999999998765
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.65 E-value=9.9e-08 Score=71.97 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=108.6
Q ss_pred EEEcCCCCCCCHHH-H--HHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 9 LYVGNLPGDIRERE-V--EDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 9 l~v~nl~~~~t~~~-l--~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
++++++-..+..+- | ...|+.+-.+....+.. .+.-.+++|+.|.....-..+-..-+++.+.-..|++ +...
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~gt 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAGT 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cccc
Confidence 34555544444433 2 55666666555555533 3455789999999877777777666666666555433 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHH
Q 024935 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDM 159 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a 159 (260)
-... .....-......||.+.|...++.+.|-..|.+|-......++.+. ..||+||.|.+..++
T Consensus 177 swed-----------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWED-----------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCC-----------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 1110 0111223345789999999999999999999999988888888774 457999999999999
Q ss_pred HHHHHHcCCcccccccee
Q 024935 160 KHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~ 177 (260)
..|+..|+|+.++.+.+.
T Consensus 246 ~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPIK 263 (290)
T ss_pred HHHHHhhcccccccchhH
Confidence 999999999999986554
No 132
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.63 E-value=1.9e-07 Score=69.50 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=62.5
Q ss_pred cceEEecCCCCCCCHHHHHH----HHHhcCCccEEEEEeC-CCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 108 EYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
..+|||.||+..+..++|+. +|++||+|+.|..... +-.|.|||.|.+.+.|..|+..|+|..+.|+..+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 34999999999999999888 9999999999988855 4567999999999999999999999999996553
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=4.5e-08 Score=73.80 Aligned_cols=76 Identities=18% Similarity=0.411 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
..-.||+|.|...++++.|-..|.+|-.....++ ..+++++||+||.|.+++++..|+..|+|..++.++|++.-+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3457999999999999999999999976655555 568999999999999999999999999999999999987544
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=4.8e-07 Score=75.85 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=63.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC-C---EEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-T---TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~---~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
..+.+|+|.+|...+-..+|+.+|++||+|+-++|+.+... | |+||+|.+.++|.++|..|+..++.|+.+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 45578999999999999999999999999999999887422 2 999999999999999999999999996543
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.55 E-value=5.4e-07 Score=77.16 Aligned_cols=167 Identities=12% Similarity=0.010 Sum_probs=116.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--C-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--P-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.+.+-+.+.+.+....+++++|... .|..+.|.. - +...|.++|+|....++++|+. -|...+-.+.|++..+..
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCc
Confidence 3445566888999999999999644 355555522 2 3337899999999999999998 677888888888876653
Q ss_pred CCCCCCC------------CCCCCCCC--------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccE-EEEE
Q 024935 83 GRGRSSS------------DRHSSHSS--------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVF 141 (260)
Q Consensus 83 ~~~~~~~------------~~~~~~~~--------~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~ 141 (260)
....... ..+..... +.....+...+..|||..||..++..++.++|.....|++ |.+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 3211110 01111110 1111233456789999999999999999999998888877 5555
Q ss_pred eCCC---CCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 142 RDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 142 ~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
..+. ..-|||.|..++++..|...-+...++.+
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCce
Confidence 4433 34799999999999998886666666653
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=3.9e-07 Score=69.95 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=64.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC---CEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
..+.|+|.|||+.++..+|+++|..||.+..+.+-.++.+ +.|-|.|...++|..|++.+++..++|..+...+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3478999999999999999999999998888888777665 6899999999999999999999999997644333
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.53 E-value=2.1e-06 Score=71.32 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC----CCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.....|||.|||.+++..+|+++|..||.|....|... ....||||+|++.++++.|+.+- -..+++ ..+.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEE
Confidence 34456999999999999999999999999988666543 23369999999999999999965 666666 5666
Q ss_pred eecccCC
Q 024935 182 VREYDHR 188 (260)
Q Consensus 182 ~~~~~~~ 188 (260)
+++.+..
T Consensus 361 Veek~~~ 367 (419)
T KOG0116|consen 361 VEEKRPG 367 (419)
T ss_pred EEecccc
Confidence 6665553
No 138
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.51 E-value=5.8e-07 Score=65.92 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=66.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhc-CCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.......++|..+|..+.+.++..+|.++ |.+..+.+..+. ..|||||+|++.+.|.-|.+.||++.+.++.+.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33445678999999999999999999998 566666665664 4469999999999999999999999999988877
Q ss_pred EEeeec
Q 024935 179 YVRVRE 184 (260)
Q Consensus 179 ~~~~~~ 184 (260)
...-.+
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 655443
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=5.4e-07 Score=71.05 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHH-cCCccccccceeeEE
Q 024935 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK-LDDSEFRNAFSRAYV 180 (260)
Q Consensus 102 ~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~-l~~~~~~g~~~~~~~ 180 (260)
++....-.+|||++|...+++.+|.++|.+||+|..+.+..... .|||+|.+.+.|+.|..+ +|...|+| ..+
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEE
Confidence 44556678999999999999999999999999999999887654 899999999999988876 56666777 455
Q ss_pred eeecccC
Q 024935 181 RVREYDH 187 (260)
Q Consensus 181 ~~~~~~~ 187 (260)
.+.+.++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 5555444
No 140
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.50 E-value=3.6e-07 Score=79.12 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=64.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
..++|||++|+..+++.+|..+|+.||.|..|.++.+ .++|||.+....+|.+|+.+|++..+.++.++.++.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~--R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP--RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC--CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4579999999999999999999999999998887654 5699999999999999999999999988665444433
No 141
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.49 E-value=3.8e-07 Score=69.13 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=51.0
Q ss_pred HHHHHHHh-hcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 21 REVEDLFY-KYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 21 ~~l~~~F~-~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++|...|+ +||+|.++.+ .......|.+||.|..+++|++|+..||+.+|.|++|.+.++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444555 9999999987 2234568999999999999999999999999999999998863
No 142
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.2e-07 Score=71.20 Aligned_cols=69 Identities=33% Similarity=0.529 Sum_probs=62.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
...+.|+|.||+..+.+++|.++|.++|.+....+ ..+++||+|...++|..|+..|++..+.|+.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34678999999999999999999999999854444 3789999999999999999999999999999998
No 143
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.38 E-value=7.7e-07 Score=59.86 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC-----ccCCcEEEEE
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-----DFDGHRLRVE 78 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~-----~~~g~~i~v~ 78 (260)
+.|.|.+++..++.++|+++|+.||+|..|.+.. .-..|||-|.+++.|+.|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5789999999999999999999999999998863 2348999999999999998875543 4455544443
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=8.1e-07 Score=74.31 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=61.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
...-+|+|-|||..++.++|.++|+.||+|..+..-. ...+.+||+|.+..+|+.|++.|++.++.|+.+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456899999999999999999999999999855433 3446899999999999999999999999996554
No 145
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.33 E-value=5.9e-07 Score=71.30 Aligned_cols=80 Identities=31% Similarity=0.479 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccE--------EEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
...+|||-+||.++++++|.++|.+||.|.. |+| +.|..+++-|.|.|.++..|+.|+..+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999997632 333 45788999999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 024935 74 RLRVELAHGGR 84 (260)
Q Consensus 74 ~i~v~~~~~~~ 84 (260)
+|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887544
No 146
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.30 E-value=8.2e-07 Score=74.75 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-hcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc---CCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~i~v~~ 79 (260)
.+++.|+|.||-.-+|..+|++|+. .+|.|.+.+|. +-+..|||.|.+.++|.+...+|||..| +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 77888888772 2256899999999999999999999888 577888888
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 75
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=7e-07 Score=66.03 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=62.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC--CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
....+|+|+|+-..++++-|.|+|-+.|.|..+.|..... ..||||.|++.-...-|++-+||..+.+..+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchh
Confidence 3457899999999999999999999999999999986643 3499999999999999999999998887544
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=4.1e-06 Score=72.09 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=64.0
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-------CCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
...+..++|||+||++.++++.|...|..||.+..+.|++... ..+|||.|.+..+|+.|++.|+|..+.+.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3456678999999999999999999999999999999997732 24899999999999999999999998873
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.21 E-value=2.9e-06 Score=57.11 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=39.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCc
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~ 169 (260)
+.|+|.+++..++.++|++.|+.||.|.+|.+..... .|+|.|.+++.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5788999999999999999999999999988876544 7899999999999999987655
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.16 E-value=6.2e-06 Score=48.01 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=43.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHH
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (260)
++.|-|.+.++... ++|..+|..||+|..+.+. .....+||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 35788899988776 4556689999999998886 34569999999999999985
No 151
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.16 E-value=1.3e-05 Score=63.43 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=65.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccE--------EEEEeCCCC---CEEEEEEcChhHHHHHHHHcCCcccc
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~---~~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
....++.|||.|||..+|.+++.++|+++|-|.. |+++.+..+ |=|.+.|...+++.-|++.|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456678999999999999999999999997643 777777654 46999999999999999999999999
Q ss_pred ccceeeEEeeeccc
Q 024935 173 NAFSRAYVRVREYD 186 (260)
Q Consensus 173 g~~~~~~~~~~~~~ 186 (260)
| ..|.|..++
T Consensus 210 g----~~~rVerAk 219 (382)
T KOG1548|consen 210 G----KKLRVERAK 219 (382)
T ss_pred C----cEEEEehhh
Confidence 8 455655443
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.10 E-value=2.1e-06 Score=65.04 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-----------CCCC----ceEEEEecChHHHHHHHHhCCCCc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----------PRPP----GYAFVEFEEARDAEDAIRGRDGYD 69 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~a~~~l~~~~ 69 (260)
.+-.||+.+||+.+...-|+++|..||+|-.|.|... +.+. .-++|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999999331 1222 237899999999999999999999
Q ss_pred cCCcE
Q 024935 70 FDGHR 74 (260)
Q Consensus 70 ~~g~~ 74 (260)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.10 E-value=3.6e-06 Score=66.52 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=63.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
-++|||||-|.+|+++|.+.+...| .+.++++. ..++++|||+|...+...+++.++.|....|+|+.-.|...+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4699999999999999999998887 45555552 358999999999999999999999999999999877665443
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.08 E-value=4.4e-05 Score=50.21 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=54.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhc--CCccEEEEEeC----CCCCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
++|.|.|||...++++|.+++... |..-.+.++.+ .+.|||||.|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 689999999999999999998754 44445555554 3457999999999999999999999998753
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.05 E-value=2.7e-05 Score=51.55 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=53.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe-c---------CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL-K---------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~-~---------~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
..+-|.|-+.|+. ....|.++|++||+|.+..- . ......+...|+|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3566889999988 55788999999999988751 0 012345689999999999999999 8999999864
Q ss_pred E-EEEEc
Q 024935 75 L-RVELA 80 (260)
Q Consensus 75 i-~v~~~ 80 (260)
| -|.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 46555
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.05 E-value=1.6e-05 Score=62.68 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCCHHHH------HHHHhhcCCccEEEecC-CC--C-CCce--EEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 7 RTLYVGNLPGDIREREV------EDLFYKYGPIAHIDLKI-PP--R-PPGY--AFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l------~~~F~~~G~v~~~~~~~-~~--~-~~g~--afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
+-+||-+||+.+..+++ .++|++||.|..|.+.. +. . ..+. .||+|...++|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999988776662 46999999999999932 21 1 1122 499999999999999999999999999
Q ss_pred EEEEEcc
Q 024935 75 LRVELAH 81 (260)
Q Consensus 75 i~v~~~~ 81 (260)
|++.|-.
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998754
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.04 E-value=2.9e-06 Score=68.82 Aligned_cols=67 Identities=28% Similarity=0.310 Sum_probs=56.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC--------C--------CCCceEEEEecChHHHHHHHHhCCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--------P--------RPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~--------~--------~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
-++++|.+.|||.+-.-+.|.+||+.||.|+.|.|-.. + ..+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999888999999999999999999332 1 1256899999999999999997765
Q ss_pred Ccc
Q 024935 68 YDF 70 (260)
Q Consensus 68 ~~~ 70 (260)
...
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 443
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.99 E-value=5.8e-06 Score=65.84 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=69.2
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~-v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
-++.++| |++|+.++++++|+.+|..+|.|..+.+. .++..+|||||.|.....+..|+.. +...+.++++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455566 99999999999999999999999999993 3578899999999999999999996 88899999999988
Q ss_pred ccCC
Q 024935 80 AHGG 83 (260)
Q Consensus 80 ~~~~ 83 (260)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 7653
No 159
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.98 E-value=4.7e-05 Score=65.69 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=65.0
Q ss_pred CCCc-eEEEcCCCCCCCHHHHHHHHhhcCCcc-EEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASR-TLYVGNLPGDIREREVEDLFYKYGPIA-HIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~-~l~v~nl~~~~t~~~l~~~F~~~G~v~-~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.+.+ .|-+.|+|..++-+||.++|..|-.+- +|.+ ..++...|-|.|.|++.++|..|...|++..|..+.|.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4555 788999999999999999999996443 2333 56788999999999999999999999999999999988754
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.89 E-value=6.7e-05 Score=47.10 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=42.3
Q ss_pred ceEEecCCCCCCCHHHH----HHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 109 YRVLVTGLPSSASWQDL----KDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l----~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
+.|+|.|||.......| ++++..+| +|..+. ++.|.|.|.+.+.|..|.+.|+|..+.|..+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 57999999999887665 45666776 555552 4589999999999999999999999999543
No 161
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.86 E-value=3.1e-05 Score=59.73 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=61.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....++|+|+...++.++++.+|+.||.+..+.+..+. .++|+||+|.+.+.++.|+. ||+..+.|..+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 44689999999999999999999999999877777664 34699999999999999999 999999996554
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=4.8e-05 Score=64.09 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=59.8
Q ss_pred CceEEEcCCCCCCC--H----HHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccC-CcEEE
Q 024935 6 SRTLYVGNLPGDIR--E----REVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLR 76 (260)
Q Consensus 6 ~~~l~v~nl~~~~t--~----~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~ 76 (260)
.+.|+|.|+|.--. . .-|..+|+++|+|..+.++. .+..+||+|++|.+..+|+.|++.|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 46789999986422 2 23667899999999999954 4668999999999999999999999998885 55666
Q ss_pred EEEcc
Q 024935 77 VELAH 81 (260)
Q Consensus 77 v~~~~ 81 (260)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65433
No 163
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.82 E-value=0.00014 Score=51.14 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=53.5
Q ss_pred CCCceEEEcCCC-----CCCCHH----HHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 4 RASRTLYVGNLP-----GDIRER----EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 4 ~~~~~l~v~nl~-----~~~t~~----~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
-|.-||.|.=+. ...-++ +|.+.|..||+|.=+++. -+.-+|+|.+-+.|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 355667665444 122233 677889999999999887 3578999999999999999 9999999999
Q ss_pred EEEEEccCCC
Q 024935 75 LRVELAHGGR 84 (260)
Q Consensus 75 i~v~~~~~~~ 84 (260)
|+|..-.+..
T Consensus 99 l~i~LKtpdW 108 (146)
T PF08952_consen 99 LKIRLKTPDW 108 (146)
T ss_dssp EEEEE-----
T ss_pred EEEEeCCccH
Confidence 9998865443
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=8.7e-05 Score=62.01 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=55.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-hcCCccEEEecCC---CCCCceEEEEecChHHHHHHHH
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~ 63 (260)
+|.+|||||+||.-++.++|-.+|. -||.|..+-|..+ +-++|-|=|+|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 6889999999999999999999999 8999999999555 5678999999999999999998
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=0.00011 Score=55.92 Aligned_cols=101 Identities=27% Similarity=0.270 Sum_probs=81.6
Q ss_pred HHHHHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCcc
Q 024935 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (260)
Q Consensus 57 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~ 136 (260)
-|..|...|++....|+.+.|.|+.. ..|+|.||...+..+.+.+.|..||.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 45666677899999999999999864 4699999999999999999999999998
Q ss_pred EEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 137 FSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 137 ~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
...++.+. ..+-++|.|...-.|.+|+..++..-+.+.......-|.
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 76666553 335789999999999999999877777665544444433
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.75 E-value=7e-05 Score=57.11 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHHHHHHH-hcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 123 QDLKDHMR-RAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 123 ~~l~~~f~-~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
++|...|. +||+|..+.|-.+. -.|.++|.|...++|+.|+..||+.++.|+.+.+.+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444554 89999887665543 3368999999999999999999999999988866554
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00019 Score=41.73 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=40.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHH
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~ 163 (260)
+.|.|.+.++... +.+..+|..||+|..+.+.. .....+|.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 3577888887654 55666999999999988872 2338999999999999985
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.56 E-value=0.00016 Score=64.24 Aligned_cols=81 Identities=27% Similarity=0.429 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~ 81 (260)
.+++.||+++|++++....|...|..||.|..|.+. +..-||||.|.+...|+.|++.|-|..|.| +.|.|.|+.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 578899999999999999999999999999999884 235599999999999999999999999974 679999988
Q ss_pred CCCCCC
Q 024935 82 GGRGRS 87 (260)
Q Consensus 82 ~~~~~~ 87 (260)
.....+
T Consensus 530 ~~~~~P 535 (975)
T KOG0112|consen 530 PPGATP 535 (975)
T ss_pred CCCCCh
Confidence 655443
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.53 E-value=0.00043 Score=43.49 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
..+|+ +|+.+...||.+||+.||.|.--.|.. .-|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 45554 999999999999999999987777753 389999999999999998775
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00033 Score=55.56 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=58.6
Q ss_pred CCcceEEecCCCCCCCHHHH------HHHHHhcCCccEEEEEeCCC-----CC--EEEEEEcChhHHHHHHHHcCCcccc
Q 024935 106 RSEYRVLVTGLPSSASWQDL------KDHMRRAGDVCFSQVFRDGS-----GT--TGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l------~~~f~~~g~v~~~~~~~~~~-----~~--~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
.....+||-+|++.+..+++ .++|.+||+|..+.+.+... .+ -.||.|...++|..||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34457899999998876662 47899999999988875531 12 2489999999999999999999999
Q ss_pred ccceeeE
Q 024935 173 NAFSRAY 179 (260)
Q Consensus 173 g~~~~~~ 179 (260)
|+.+++.
T Consensus 192 Gr~lkat 198 (480)
T COG5175 192 GRVLKAT 198 (480)
T ss_pred CceEeee
Confidence 9876543
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.46 E-value=8.7e-05 Score=56.49 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=59.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC---------C-------EEEEEEcChhHHHHHHHHcCCccc
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------~-------~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
.-.||+.+||+.+...-|+++|..||.|-.|.+...... + -|+|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988765321 1 389999999999999999999999
Q ss_pred cccc
Q 024935 172 RNAF 175 (260)
Q Consensus 172 ~g~~ 175 (260)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9953
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.40 E-value=0.00055 Score=53.28 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCCCC-----EEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 122 WQDLKDHMRRAGDVCFSQVFRDGSGT-----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~~~~-----~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+.++++.+.+||+|..|.|+..++.. -.||+|+..++|.+|+-.|||..|+|+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 56788899999999999998775432 5899999999999999999999999987653
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.36 E-value=0.00059 Score=53.09 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=56.5
Q ss_pred CCceEEEcCC--CCCCC---HHHHHHHHhhcCCccEEEecCC-C---CCCceEEEEecChHHHHHHHHhCCCCccCCcEE
Q 024935 5 ASRTLYVGNL--PGDIR---EREVEDLFYKYGPIAHIDLKIP-P---RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (260)
Q Consensus 5 ~~~~l~v~nl--~~~~t---~~~l~~~F~~~G~v~~~~~~~~-~---~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 75 (260)
+++.|.+.|. +-.++ ++++.+..++||.|..|.|... + .-.--.||+|...++|.+|+-.|||.+|.|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3444555554 22333 4568888899999999888432 1 123358999999999999999999999999998
Q ss_pred EEEEcc
Q 024935 76 RVELAH 81 (260)
Q Consensus 76 ~v~~~~ 81 (260)
...|-.
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 877643
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.36 E-value=0.0022 Score=44.67 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCceEEEcCCCCCCCHH----HHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIRER----EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~----~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
-|-.||.|.=|..++... .|...++.||+|.+|.+- .+..|.|.|.+..+|-.|+.+++. ..-|..+++.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 456688888877776432 355667899999999874 356899999999999999998776 66788888887
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.24 E-value=0.002 Score=42.76 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=47.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEE-E----------EeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
.-|.|-+.|+. ....|.++|++||.|+... + .....+....|.|.++.+|++|+. .||..+.|..+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 45778888887 6778889999999987764 0 112233488999999999999999 79999988644
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0014 Score=55.62 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=54.8
Q ss_pred cceEEecCCCCCCC------HHHHHHHHHhcCCccEEEEEeCCCC---CEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 108 EYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 108 ~~~~~v~nl~~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
...|+|.|+|---. +..|..+|+++|++....++.+..+ ||.|++|++..+|+.|++.|||+.+.-.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 35788888885432 3346678999999999999866544 59999999999999999999999987643
No 177
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.15 E-value=0.0006 Score=60.48 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=68.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
...|||.|+|...|.++|+.++..+|.++++.+ ...++++|.|||.|.++.+|..++..+++..+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 346899999999999999999999999999988 55789999999999999999999998888888888788877665
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.11 E-value=0.0043 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CccEEEecCCCC-CCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
+.+..+.+...|+.++.++|..+.+.+- .|..++|..++. ++-.++|.|.+.++|...+..+||+.|..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444455555555566677776666553 566778876655 56678999999999999999999998863
No 179
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.01 E-value=0.0047 Score=38.74 Aligned_cols=66 Identities=27% Similarity=0.494 Sum_probs=40.4
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhhcCC-----ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 8 TLYVGNLP--GDIREREVEDLFYKYGP-----IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 8 ~l~v~nl~--~~~t~~~l~~~F~~~G~-----v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+||| |+- ..++..+|..++...+. |-.|.+. ..|+||+-.. +.|..++..|++..+.|+++.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566 554 35899999999987754 4556665 4599999886 6889999999999999999999864
No 180
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.96 E-value=0.0014 Score=52.68 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccE--------EEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
.....+|||-+||..++..+|.++|.++|.|.. +.+..+. .++-|.|.|+++..|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455678999999999999999999999997643 4444443 3457999999999999999999999999
Q ss_pred ccce
Q 024935 173 NAFS 176 (260)
Q Consensus 173 g~~~ 176 (260)
+..+
T Consensus 143 gn~i 146 (351)
T KOG1995|consen 143 GNTI 146 (351)
T ss_pred CCCc
Confidence 8544
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.89 E-value=0.01 Score=35.42 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc----CCccEEEecCCCCCCceEEEEecChHHHHHHHHhC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (260)
...|+|.++ .+++.++|+.+|..| ++ ..|....+ .-|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 357899998 458889999999999 54 33444322 26889999999999999865
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.0039 Score=52.93 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=72.8
Q ss_pred ChHHHHHHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHh--
Q 024935 54 EARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR-- 131 (260)
Q Consensus 54 ~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~-- 131 (260)
|.+-..++|....+..++.+-.+|... ..-+.|++..||..+..++|+.+|..
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~-------------------------~kRcIvilREIpettp~e~Vk~lf~~en 200 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPN-------------------------HKRCIVILREIPETTPIEVVKALFKGEN 200 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccC-------------------------cceeEEEEeecCCCChHHHHHHHhccCC
Confidence 344445666666777776665555332 23468889999999999999999974
Q ss_pred cCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC--ccccccceeeEEe
Q 024935 132 AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVR 181 (260)
Q Consensus 132 ~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~--~~~~g~~~~~~~~ 181 (260)
+-+++.|.+..+.+ =||+|++..||+.|.+.|.. ++|.|+.+-+.|+
T Consensus 201 cPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 201 CPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred CCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 77899999887753 48999999999999988754 4555655544443
No 183
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.81 E-value=0.00089 Score=49.63 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-cCCc---cEEEecC-----CCCCCceEEEEecChHHHHHHHHhCCCCccCC--
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-- 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~v---~~~~~~~-----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-- 72 (260)
....+|.|++||+++|++++.+.+.. ++.. ..+.-.. ......-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999997776 6655 2333111 12234579999999999999999999977742
Q ss_pred ---cEEEEEEccCCC
Q 024935 73 ---HRLRVELAHGGR 84 (260)
Q Consensus 73 ---~~i~v~~~~~~~ 84 (260)
....|++|....
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 356777777644
No 184
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.77 E-value=0.0021 Score=52.80 Aligned_cols=66 Identities=14% Similarity=0.289 Sum_probs=55.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC---CC--------------CCEEEEEEcChhHHHHHHHHc
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GS--------------GTTGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~--------------~~~~~v~f~~~~~a~~a~~~l 166 (260)
+..+..+|.+.|||.+-.-+.|.++|..+|.|..|.|.+. +. ...|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3356789999999999888999999999999999999876 21 126899999999999999988
Q ss_pred CCc
Q 024935 167 DDS 169 (260)
Q Consensus 167 ~~~ 169 (260)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 553
No 185
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.76 E-value=0.01 Score=49.26 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-CCccEEEecCCCCC-CceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRP-PGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~-~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
+++.|+|-.+|..++.-||..|...+ -.|.+|++..++.+ +-.++|.|.+.++|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47889999999999999999988765 47889999777654 4568999999999999999999999864
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.75 E-value=0.02 Score=34.19 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=44.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhc---CCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHc
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l 166 (260)
..|+|.|+.. ++.++|+.+|..| .....+..+.+. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 4789999854 6889999999998 235567777776 5899999999999999865
No 187
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.75 E-value=0.001 Score=55.15 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDI-REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~-t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
...+.|-+.-+|..+ +-++|-.+|.+||+|..|.+-+. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.+.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 345566666676664 67789999999999999999543 4479999999999988888 899999999999999876
Q ss_pred C
Q 024935 83 G 83 (260)
Q Consensus 83 ~ 83 (260)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.63 E-value=0.01 Score=44.14 Aligned_cols=61 Identities=30% Similarity=0.395 Sum_probs=46.3
Q ss_pred CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC--CCccCCcEEEEEEccC
Q 024935 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHG 82 (260)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~ 82 (260)
..+.|+++|..|+.+..+... .+-+-..|.|.+.+.|..|...|+ +..+.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999888875 335678999999999999999999 9999999999999854
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.0032 Score=53.42 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh--hcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC--CccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFY--KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~--~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 79 (260)
..-|.|+|.-||..+-.++|+.||. .|-.+++|.+... .-=||+|++..||+.|++.|.. ..|-|++|...+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3457899999999999999999997 4778999998421 2459999999999999887654 456676665543
No 190
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.43 E-value=0.0022 Score=55.51 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+.-+|||+||...+..+-++.+...||-|..+.... |+|..|.....+..|+..++-..++|..+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 567899999999999999999999999998887752 9999999999999999999999999998887764
No 191
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.30 E-value=0.0079 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=14.1
Q ss_pred CCceEEEEecChHHHHHHHHhCCC
Q 024935 44 PPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 44 ~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
.+.-.||-|..+.-|.+++. |-+
T Consensus 172 lRT~v~vry~pe~iACaciy-LaA 194 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACIY-LAA 194 (367)
T ss_pred cccceeeecCHHHHHHHHHH-HHH
Confidence 34567888877666665555 443
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.25 E-value=0.018 Score=36.37 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=40.0
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC
Q 024935 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~ 168 (260)
.||--..|..+...+|.++|+.||.|.--.+ .+. .|||...+.+.|..|+..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-NDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-CTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-cCC---cEEEEeecHHHHHHHHHHhcc
Confidence 3444449999999999999999998754443 332 799999999999999998764
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=0.018 Score=45.37 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=51.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE-EEEEEcc
Q 024935 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-LRVELAH 81 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-i~v~~~~ 81 (260)
|-|.++|+.-. .-|..+|++||+|...... ..-.+-+|.|.+..+|.+||. .||+.|+|-. |=|..+.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 55666766543 5678899999999887654 345689999999999999999 8999998764 3444433
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.18 E-value=0.023 Score=40.18 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 123 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
.+|.+.|..||.+.-+.+..+ .-+|+|.+-+.|..|+. ++|.+++|+.+...++..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 367788999999998888765 57999999999999999 999999997665555443
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.17 E-value=0.002 Score=51.39 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=58.4
Q ss_pred ceEEEcCCCCCCCHHHHHH---HHhhcCCccEEEecCCC------CCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 7 RTLYVGNLPGDIREREVED---LFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~---~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
+-+||-+|+..+..+.+.+ .|.+||.|..|.+..+. ....-+||+|...++|..||...+|+.++|+.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4577888888766555543 88999999999885422 12234899999999999999999999999998777
Q ss_pred EEcc
Q 024935 78 ELAH 81 (260)
Q Consensus 78 ~~~~ 81 (260)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6654
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.02 E-value=0.009 Score=45.89 Aligned_cols=74 Identities=28% Similarity=0.373 Sum_probs=58.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCcc----CCcEEEEEEc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF----DGHRLRVELA 80 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~----~g~~i~v~~~ 80 (260)
..|+|.||+..+.-+.|.+-|+.||+|..-.+ ...++..+-++|+|...-.|.+|+..+.-.-| .+.+.-|..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999876555 33477788999999999999999987743333 3455555443
No 197
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=95.48 E-value=0.0072 Score=48.04 Aligned_cols=12 Identities=0% Similarity=0.221 Sum_probs=6.1
Q ss_pred HHHHHHHHHhcC
Q 024935 122 WQDLKDHMRRAG 133 (260)
Q Consensus 122 ~~~l~~~f~~~g 133 (260)
+.+|.+-|++.-
T Consensus 226 qkqId~~ie~r~ 237 (453)
T KOG2888|consen 226 QKQIDEKIEERK 237 (453)
T ss_pred HHHHHHHHHhcc
Confidence 445555555443
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.38 E-value=0.038 Score=41.01 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=48.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHh-cCCccEEEEEe---CC--CC----CEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFR---DG--SG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~---~~--~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
....|.|.+||+.+|++++.+.+.. ++....+..+. .. .. .-|||.|.+.+++..-...++|..+.+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997776 66552222222 11 11 169999999999999999999988876554
Q ss_pred eeEEe
Q 024935 177 RAYVR 181 (260)
Q Consensus 177 ~~~~~ 181 (260)
.....
T Consensus 86 ~~~~~ 90 (176)
T PF03467_consen 86 NEYPA 90 (176)
T ss_dssp -EEEE
T ss_pred CCcce
Confidence 43333
No 199
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.22 E-value=0.014 Score=50.22 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
......|+|.||--..|.-+|++++...| .|....|-.- +-.|||.|.+.++|......|||..+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI--KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh--hcceeEecccHHHHHHHHHHHhccccC
Confidence 34567899999999999999999999555 5555433222 237999999999999999999998774
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.20 E-value=0.1 Score=31.69 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
.++-++|+..+..|+ ...|....+ | -||.|.+.++|+.++...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 455555433 3 489999999999999999999888877654
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.12 E-value=0.018 Score=51.56 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=58.4
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc--CCcEEEEEEccCC
Q 024935 10 YVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF--DGHRLRVELAHGG 83 (260)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~ 83 (260)
++.|.+-+.+-.-|-.+|..||.|.+.+... .-..|.|+|...+.|..|+.+|+|+.+ .|-+.+|.+++.-
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444455677788999999999999998853 355899999999999999999999876 5889999998743
No 202
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.08 E-value=0.051 Score=43.46 Aligned_cols=11 Identities=0% Similarity=0.190 Sum_probs=5.5
Q ss_pred CCCHHHHHHHH
Q 024935 119 SASWQDLKDHM 129 (260)
Q Consensus 119 ~~~~~~l~~~f 129 (260)
.+++++|.++.
T Consensus 212 d~~k~eid~ic 222 (367)
T KOG0835|consen 212 DTTKREIDEIC 222 (367)
T ss_pred CCcHHHHHHHH
Confidence 34555555543
No 203
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.01 E-value=0.001 Score=54.39 Aligned_cols=78 Identities=17% Similarity=0.332 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
-++++.|.|||+...++-|-.|+..||.|..|....+.......-|+|...+.+..|++.|+|..+....++|.|...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 356789999999999999999999999999998865544444566889999999999999999999999999988664
No 204
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.95 E-value=0.03 Score=45.02 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=57.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcC--CccEEEEEeC----CCCCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
....+||+||..-+|.++|.+.+...| .+..++++.+ +.+|||+|...+....++.++-|-.++|.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 346899999999999999999988777 4566666655 45579999999999999999999999998863
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.70 E-value=0.27 Score=38.85 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=58.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCC----------CCCceEEEEecChHHHHHHHHh----CCC--Cc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIRG----RDG--YD 69 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~a~~~----l~~--~~ 69 (260)
++.|.+.||...++--.+...|-+||+|++|.+.... .....+.+.|.+.+.|...+.. |.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999995432 3346889999999988766532 222 34
Q ss_pred cCCcEEEEEEcc
Q 024935 70 FDGHRLRVELAH 81 (260)
Q Consensus 70 ~~g~~i~v~~~~ 81 (260)
+....|.|.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566778887765
No 206
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.19 Score=43.41 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=64.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhc----CCccEEEecCC-------------CC---------------------
Q 024935 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR--------------------- 43 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~v~~~~~~~~-------------~~--------------------- 43 (260)
+-+++.|-|.|+.|. +...+|..+|..| |.|..|.|..+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 357889999999997 8999999999977 58888888321 11
Q ss_pred ----------------CCceEEEEecChHHHHHHHHhCCCCccC--CcEEEEEEccCC
Q 024935 44 ----------------PPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGG 83 (260)
Q Consensus 44 ----------------~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~ 83 (260)
..-||.|+|.+++.|...+..++|..|. +..|-+.|....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 1258999999999999999999999997 556666665543
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.63 E-value=0.52 Score=31.97 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=47.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCCCC--CEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~--~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
..+.+...|..++..+|..+.+.+- .|..+.+..+... ..+.+.|.+.++|.+-...+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444445555556667766666655 4567888877543 368899999999999999999999865
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.38 E-value=0.15 Score=40.40 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=49.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
.=|.|-++|+. ....|-.+|.+||.|+..... .++.+-+|.|.+.-+|++|+. .||+.|+|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 34556677665 445677899999999876665 555589999999999999999 6888888754
No 209
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.30 E-value=0.24 Score=34.80 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCCcceEEecCCCCCC----CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcc
Q 024935 105 RRSEYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~ 170 (260)
.++..+|.|.=|..++ +...|.+.++.||.|..|.....+ .|.|.|.+...|-.|+.++....
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 3456677776544443 445566778899999988765443 79999999999999999987743
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.84 E-value=0.12 Score=33.43 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=44.8
Q ss_pred EEEEecChHHHHHHHHhCC-CCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHH
Q 024935 48 AFVEFEEARDAEDAIRGRD-GYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (260)
Q Consensus 48 afV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~ 126 (260)
|+|+|.++.-|+..+..-. ...+++..+.|............ -.-.......+|.|.|||....+++|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k----------~qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK----------FQVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE----------EEEEEcccCCEEEEeCCCCCCChhhhe
Confidence 7899999999999888322 24455666666544322111000 000112345689999999999999887
Q ss_pred HHH
Q 024935 127 DHM 129 (260)
Q Consensus 127 ~~f 129 (260)
+.+
T Consensus 71 D~L 73 (88)
T PF07292_consen 71 DKL 73 (88)
T ss_pred eeE
Confidence 764
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.25 E-value=0.56 Score=39.39 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=57.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCCCC--CEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~--~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
++.|.|-.+|..++-.+|..++..+- .|..+.++++... ..+.|.|.+.++|..-...+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998775 6778999887433 378899999999999999999999875
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.06 E-value=0.096 Score=37.84 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=76.5
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhhc-CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCC
Q 024935 9 LYVGNL-P-GDIREREVEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (260)
Q Consensus 9 l~v~nl-~-~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 85 (260)
..|+.+ . ...+-..|.+.+... +....+.+..- ..++..+.|.+++++..++. .....+.|..+.+....+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 445555 2 346677777766543 33334444221 25799999999999999988 555677888777776653222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCccEEEEEeCC
Q 024935 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDG 144 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 144 (260)
.... .......=|.|.|||.. .+++.+.++.+.+|++..+......
T Consensus 95 ~~~~-------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV-------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc-------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1110 00011233667799988 4778889999999999888776543
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.05 E-value=0.15 Score=44.66 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=59.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
+.++..++||+|+-..+..+-++.+...+|.|..+.... |||..|..+.-+..|+..++...++|..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 445668999999999999999999999999988776654 89999999999999999999888887544
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.97 E-value=0.082 Score=42.48 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=52.5
Q ss_pred ceEEecCCCCCCCHHHHH---HHHHhcCCccEEEEEeCCC-----CC--EEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 109 YRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-----GT--TGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~-----~~--~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
.-+||-+|+..+..+.+. +.|.+||.|..+.+..+.. .+ .++|+|+..++|..||...+|..++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 456777888776555443 4688999999998887652 11 5899999999999999999999998865
No 215
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.94 E-value=1.3 Score=32.49 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=56.2
Q ss_pred CceEEEcCCCCCCC-H----HHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCc-EEEEEE
Q 024935 6 SRTLYVGNLPGDIR-E----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVEL 79 (260)
Q Consensus 6 ~~~l~v~nl~~~~t-~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~ 79 (260)
.+++++.+|+..+- . .....+|.+|-+..-+.+. .+.+..-|.|.+++.|..|...+++..|.|. .+++.+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 35677888877632 2 2345567766665555554 3456778899999999999999999999988 889888
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 87 aQ~~~~ 92 (193)
T KOG4019|consen 87 AQPGHP 92 (193)
T ss_pred ccCCCc
Confidence 875443
No 216
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.48 E-value=0.9 Score=33.98 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcC--CccccccceeeEEe
Q 024935 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYVR 181 (260)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~--~~~~~g~~~~~~~~ 181 (260)
..+.|+++|..++.+..+..+..-. -..|.|.+.+.|..|...|+ +..+.|..++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 5688999999999888776665432 57899999999999999999 89999976555443
No 217
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.25 E-value=0.17 Score=42.60 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=52.3
Q ss_pred CcceEEecCCCCCC-CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 107 SEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 107 ~~~~~~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..+.|-+.-.|... +..+|..+|.+||.|..|.+-.. ...|.|+|.+..+|-+|.. .++..|+++.++.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCceeEE
Confidence 33445555556554 68899999999999999998766 2368999999999988776 6777888865543
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.18 E-value=1.9 Score=26.20 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 119 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
.++-++++..+..|+- ..|..+.. | -||.|.+..+|+++....++..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-E-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 4578899999998873 23333333 2 2799999999999999999998876
No 219
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=87.83 E-value=2.8 Score=26.89 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=42.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHHh
Q 024935 8 TLYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (260)
.-|+-.++..++..+|++.++.+ | .|..|.........--|||.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 45566789999999999999875 4 555665544445566899999998888876543
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.41 E-value=4.7 Score=25.04 Aligned_cols=56 Identities=9% Similarity=0.186 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHhcCC-----ccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 118 SSASWQDLKDHMRRAGD-----VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 118 ~~~~~~~l~~~f~~~g~-----v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..++..+|..++...+. |-.+.+..+ |+||+-. .+.|..++..|++..+.|+.+..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~-~~~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVP-EEVAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE--TT-HHHHHHHHTT--SSS----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEE
Confidence 45688888888887654 445666555 7888754 45889999999999999965544
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.84 E-value=0.64 Score=31.89 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=30.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHH-HHHHHH
Q 024935 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARD-AEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~-a~~a~~ 63 (260)
++.|-|++.. ++.++|.+.|..|.+++-..+.....+.|++.|+|...-. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4567788653 4567899999999987655554344668999999985433 333544
No 222
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=84.34 E-value=0.6 Score=42.39 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=47.7
Q ss_pred cCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccc
Q 024935 114 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 114 ~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
.|.+-..+...|..+|..||.|..+....+-+ .|.|+|...+.|..|.+.|+|+++-
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 34444556677889999999999998877755 7899999999999999999998874
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.61 E-value=2.7 Score=34.97 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHh
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (260)
..|-|.++|.....+||...|+.|+. ..+.|++-. ...||-.|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 56889999999999999999999974 444443211 23899999999999999993
No 224
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=81.56 E-value=0.33 Score=41.81 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC---CCCCceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
-.|+|||.||+++++-.+|..+...+--+..+.+... .....+++|+|.-.-....|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 3578999999999999999999998876666666221 23345789999988888888888888776544
No 225
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=81.33 E-value=11 Score=33.52 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=26.7
Q ss_pred CCCCcceEEecCCCCC-CCHHHHHHHHHhcCCccEEEEEeC
Q 024935 104 SRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 143 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~ 143 (260)
-......+.|.+++.. ++..-..+.+.+.|++..|.+...
T Consensus 57 LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 57 LQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred cccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 3344567778777754 444555567788999888777654
No 226
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=80.64 E-value=1.6 Score=36.08 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCC-ccEEEecC-----CCCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~-v~~~~~~~-----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
.-..|.|.+||+.+++.+|.+-+.+|-+ |....+.. .....+.|||-|..+++.......++|..|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3467899999999999999998887753 22222221 1233678999999999988888888886653
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.33 E-value=3.8 Score=32.46 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=36.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChH
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (260)
+-|+|+||+.++-..+|+..+.+.|-+ -+.|.+. .+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk-g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK-GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee-cCCcceeEecCCcc
Confidence 459999999999999999999888643 2333332 34678999997643
No 228
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=77.91 E-value=23 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=18.7
Q ss_pred EEEecChHHHHHHHHhCCC-CccCCcEEEEEE
Q 024935 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVEL 79 (260)
Q Consensus 49 fV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~ 79 (260)
+|-|++...++-.+..|.. ..++-+.++|..
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 4557776666666666665 555556666544
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=75.85 E-value=14 Score=23.26 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 8 TLYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.-|+-.++..++..+|++.++.+ | .|..|.........--|||.+.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 45667889999999999999874 4 45555554444455689999998888877544
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=75.55 E-value=6.7 Score=23.38 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCccEEEe
Q 024935 21 REVEDLFYKYGPIAHIDL 38 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~ 38 (260)
.+|+++|+.+|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999988877
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.44 E-value=21 Score=22.87 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=41.1
Q ss_pred EecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHHc
Q 024935 112 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 112 ~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~l 166 (260)
|+-.++..++..+|++.++. || +|..|.....+.+. -|+|.+..-.+|.+...++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33345788899999999986 56 67777777665543 7999999998888876653
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=72.61 E-value=9.4 Score=31.39 Aligned_cols=56 Identities=21% Similarity=0.151 Sum_probs=38.3
Q ss_pred EEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHH
Q 024935 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKD 127 (260)
Q Consensus 48 afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~ 127 (260)
|||+|.+..+|..|++.+....- ..+.+..|.++ .-+.-.||.....+..++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP-------------------------~DI~W~NL~~~~~~r~~R~ 53 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP-------------------------DDIIWENLSISSKQRFLRR 53 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc-------------------------ccccccccCCChHHHHHHH
Confidence 79999999999999996554443 44566666432 2466678866666666665
Q ss_pred HHH
Q 024935 128 HMR 130 (260)
Q Consensus 128 ~f~ 130 (260)
.+.
T Consensus 54 ~~~ 56 (325)
T PF02714_consen 54 IIV 56 (325)
T ss_pred HHH
Confidence 544
No 233
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=72.23 E-value=21 Score=30.04 Aligned_cols=79 Identities=18% Similarity=0.364 Sum_probs=58.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhc----CCccEEEecCC-------------C----------------------
Q 024935 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------P---------------------- 42 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~l~~~F~~~----G~v~~~~~~~~-------------~---------------------- 42 (260)
+.+++.|-|-||.|. +...+|..+|+.| |.|..|.|..+ |
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 567899999999986 8889999999866 56666666210 1
Q ss_pred --------------C-------------------CCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEEEcc
Q 024935 43 --------------R-------------------PPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAH 81 (260)
Q Consensus 43 --------------~-------------------~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~ 81 (260)
. ..-||.|++.+.+.+...+..++|..+.. ..+-+.|..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0 02489999999999999999999988864 445555554
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=71.99 E-value=22 Score=22.38 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=41.0
Q ss_pred EEecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHHc
Q 024935 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~l 166 (260)
-|+-.++..++..+|++.++. || +|..+.....+... -|||.+..-..|.+...++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 344456788899999999886 55 66677766655442 6999999888888776653
No 235
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=70.13 E-value=4.6 Score=31.14 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~ 38 (260)
...+||+-|||..+|++.|..+.+.+|-+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 5678999999999999999999999997666555
No 236
>PF14893 PNMA: PNMA
Probab=68.47 E-value=8 Score=31.92 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=43.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh----hcCCccEEEe-cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFY----KYGPIAHIDL-KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~----~~G~v~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
.+-+.|.|.+||.++++++|.+.+. .+|...-+.- .....+...|+|+|...-+ .++- -....-.|-...|-
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n--~~~i-P~~i~g~gg~W~Vv 92 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN--YSLI-PREIPGKGGPWRVV 92 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc--hhhC-chhcCCCCCceEEE
Confidence 4667899999999999999998765 3443211111 1112234588999876332 2211 11122245677776
Q ss_pred Ecc
Q 024935 79 LAH 81 (260)
Q Consensus 79 ~~~ 81 (260)
+-.
T Consensus 93 ~~p 95 (331)
T PF14893_consen 93 FKP 95 (331)
T ss_pred ecC
Confidence 654
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.13 E-value=35 Score=27.31 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=39.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChh
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYD 157 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~ 157 (260)
.....+-|+++||+-++--.+|+..+.+.+-+- ..+.+....+-||+.|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 334456799999999999999999998877432 34445555567999997754
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.05 E-value=8.8 Score=30.37 Aligned_cols=65 Identities=23% Similarity=0.468 Sum_probs=44.0
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHHhhcCCccEEEecC--------CCCC-----Cce---------EEEE
Q 024935 6 SRTLYVGNLPGD------------IREREVEDLFYKYGPIAHIDLKI--------PPRP-----PGY---------AFVE 51 (260)
Q Consensus 6 ~~~l~v~nl~~~------------~t~~~l~~~F~~~G~v~~~~~~~--------~~~~-----~g~---------afV~ 51 (260)
..||++.+||.. -+++-|...|+.||+|..|.|+. ++.. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 467899999864 25677999999999999998832 2222 233 3455
Q ss_pred ecChHHHHHHHHhCCCCcc
Q 024935 52 FEEARDAEDAIRGRDGYDF 70 (260)
Q Consensus 52 f~~~~~a~~a~~~l~~~~~ 70 (260)
|-.-..-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 5555555667776777654
No 239
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=66.75 E-value=2.5 Score=38.59 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=7.2
Q ss_pred CCcceEEecCCCC
Q 024935 106 RSEYRVLVTGLPS 118 (260)
Q Consensus 106 ~~~~~~~v~nl~~ 118 (260)
......|++++..
T Consensus 143 ~~~qR~f~gvvtk 155 (1194)
T KOG4246|consen 143 NEPQRRFAGVVTK 155 (1194)
T ss_pred CCcceeeehhhhh
Confidence 3445666665543
No 240
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=66.71 E-value=9.2 Score=31.79 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=50.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEe-CCCC------CEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~~~------~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
...+.|..||+..++++|.+....+-.-.+...+. .... ..+||.|...++...-...++|..+-..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 35788899999999999999888876444433333 2211 2689999999999998888888877543
No 241
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=65.85 E-value=17 Score=23.38 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=33.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEec
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (260)
...-|||+|++..+-+.-...+.+..++=.-+-+..+....||+|-+.-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 3456999999998887776666665554444444444457889998873
No 242
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=63.28 E-value=4 Score=37.35 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=3.1
Q ss_pred eEEEEec
Q 024935 47 YAFVEFE 53 (260)
Q Consensus 47 ~afV~f~ 53 (260)
|+.+.+.
T Consensus 61 y~~t~~~ 67 (1194)
T KOG4246|consen 61 YGSTSLS 67 (1194)
T ss_pred ccccchh
Confidence 4444443
No 243
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=62.12 E-value=13 Score=27.52 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCHHHHHHHHhhc-CCccEEEecC--CC--CCCceEEEEecChHHHHHHHH
Q 024935 18 IREREVEDLFYKY-GPIAHIDLKI--PP--RPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 18 ~t~~~l~~~F~~~-G~v~~~~~~~--~~--~~~g~afV~f~~~~~a~~a~~ 63 (260)
.|+++|..+..-- |.+..|.+.. .+ ..+|-.||+|...++|.+.+.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 5556555544322 6888888833 33 457999999999999998877
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.68 E-value=4.3 Score=26.29 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHH
Q 024935 4 RASRTLYVGNLPGDIREREVEDLF 27 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F 27 (260)
-..++|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 456899999999999999998654
No 245
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.25 E-value=1.2 Score=37.44 Aligned_cols=75 Identities=8% Similarity=-0.105 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+...|+..||...+++++..+|..||.|..+.+. ..+...-.+||.-.. .+|..+|..+--..+.|..+.|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 3567888999999999999999999999888872 234444567777654 45556665555566677777776665
No 246
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=61.13 E-value=4 Score=33.44 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=39.2
Q ss_pred CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC
Q 024935 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (260)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (260)
+...|.+++.+.|.|..-.|..+ .+.|.+||....++++++++..|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 35778888889998876666322 45889999999999999999988864
No 247
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.12 E-value=33 Score=28.86 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=44.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCC-ccEEEEEeCCCCCEEEEEEcChhHHHHHHHH
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 165 (260)
...|-|.++|.....++|-..|..|+. -..|.++.+. .+|-.|....-|.+|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 357888999999999999999999985 3456666654 688999999999999883
No 248
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=57.18 E-value=48 Score=29.15 Aligned_cols=40 Identities=43% Similarity=0.612 Sum_probs=35.0
Q ss_pred CceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 45 PGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
..|+++.|.++..+.+|+..++|..+.+..+.+.......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 5699999999999999999999999999888887766443
No 249
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=54.96 E-value=49 Score=20.47 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=32.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (260)
.||+.++ .++++ +.+||.|..+.=. ..|+ |.|.+.++++..++.|....|
T Consensus 5 iVyl~~~------k~~r~-L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 5 IVYLYSL------KDARQ-LRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred EEEEech------HhHHh-HhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3555544 34443 4589998876443 3355 447788999999988876554
No 250
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=54.67 E-value=77 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=39.2
Q ss_pred eEEecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHH
Q 024935 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~ 165 (260)
+.++-.++..++..+|++.++. |+ .|..|..+..+.+. -|||.+..-.+|.+....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 3445556788899999999986 55 56666666555543 799999877776655543
No 251
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.34 E-value=1.3e+02 Score=27.26 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC--CCcc------CCcEEEEEEccCCCCCCCCCC
Q 024935 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDF------DGHRLRVELAHGGRGRSSSDR 91 (260)
Q Consensus 20 ~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~------~g~~i~v~~~~~~~~~~~~~~ 91 (260)
.++|.+.|..-+-|..+.+. .+||-++.+....-+...+..+. +..+ .|++|.|+|+.+...
T Consensus 60 A~~i~~~l~~~~~~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt------ 129 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT------ 129 (577)
T ss_pred HHHHHHhccccCcEeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC------
Confidence 34555555554446666664 24555555554334444433333 2222 578999999865432
Q ss_pred CCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeC
Q 024935 92 HSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 143 (260)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~ 143 (260)
..++|+.+-..+--+.|..++...| .|.....+.+
T Consensus 130 -----------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 130 -----------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred -----------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 3588998888888899999999999 4544444444
No 252
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=54.18 E-value=48 Score=23.75 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=38.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCc--cEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v--~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
..|+-.++...+..||++.++.+=.| ..|.........--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 45666788999999999999874334 444443333344579999988777665443
No 253
>PF15063 TC1: Thyroid cancer protein 1
Probab=53.43 E-value=9.5 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCcc
Q 024935 9 LYVGNLPGDIREREVEDLFYKYGPIA 34 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~G~v~ 34 (260)
--+.||-.+++.++|..||..-|..+
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchh
Confidence 34678889999999999999999643
No 254
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=50.97 E-value=38 Score=22.37 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=31.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecCh
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (260)
..-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45699999988877665555555454322233333445568999887653
No 255
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=50.63 E-value=59 Score=20.20 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhC
Q 024935 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (260)
.+|.+.+..+| +....+.-.+. -++.|+.+.+.+.++.++..+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~-G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGG-GPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSS-SSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCC-CCeEEEEECCHHHHHHHHHHH
Confidence 45777778888 66666653321 457888888888888887755
No 256
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=50.31 E-value=30 Score=22.08 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=24.2
Q ss_pred CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC
Q 024935 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (260)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (260)
.|.++... +..+||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 35555443 346999999999999999999977653
No 257
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.87 E-value=21 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.7
Q ss_pred ceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 46 GYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
.+++|.|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999988876655443
No 258
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.72 E-value=14 Score=19.32 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhhcC
Q 024935 16 GDIREREVEDLFYKYG 31 (260)
Q Consensus 16 ~~~t~~~l~~~F~~~G 31 (260)
..+++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998765
No 259
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=49.30 E-value=48 Score=18.75 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=27.6
Q ss_pred HHHHHHHhhcC-CccEEEecCCCCCCceEEEEecChHHHHHHH
Q 024935 21 REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (260)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (260)
.+|..+|...| .|..+.........+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45666777665 5666666443345667777788877777765
No 260
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=48.74 E-value=64 Score=20.04 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcC
Q 024935 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (260)
Q Consensus 122 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 167 (260)
-.++.+.+..+| +..+.+.-...+++.|+-+.+.+.+.++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 355667777888 555555555446688888888888888887663
No 261
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.91 E-value=59 Score=18.85 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecCh----HHHHHHHH
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~a~~ 63 (260)
|+.|.||.-..-...|.+.+...-.|.++.+.. ..+.+-|+|... ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~---~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL---ETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET---TTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC---CCCEEEEEEecCCCCHHHHHHHHH
Confidence 577888877777888999999988898888852 246888888754 45555555
No 262
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.40 E-value=44 Score=29.47 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=43.6
Q ss_pred EEcCCCCCC---CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEE
Q 024935 10 YVGNLPGDI---REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (260)
Q Consensus 10 ~v~nl~~~~---t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 75 (260)
+||||+.-. .-.-+..+-.+||+|..+++= ..-.|...+.+.|.+|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 467765432 334566677799999988882 123688889999999999 78899999875
No 263
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=44.77 E-value=1.1e+02 Score=22.04 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=24.7
Q ss_pred ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC
Q 024935 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
|.++.+. ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 4455443 24689999999988999999886654
No 264
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=44.35 E-value=19 Score=26.71 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=41.5
Q ss_pred eEEecCCCCCC--C---HHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccc-ceeeE
Q 024935 110 RVLVTGLPSSA--S---WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA-FSRAY 179 (260)
Q Consensus 110 ~~~v~nl~~~~--~---~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~-~~~~~ 179 (260)
.+++.+++..+ + ......+|.++.+.....++.. -+..-|.|.+++.|..|..+++...+.|+ .+..+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs--frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS--FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh--hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45555665544 2 2233445555544333333222 12456889999999999999999999997 34333
No 265
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=42.36 E-value=89 Score=20.58 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=33.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CCccEEEe--------cCCCCCCc-eEEEEecChHHHHHHHH
Q 024935 8 TLYVGNLPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~--------G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~a~~ 63 (260)
++|| |.+.++++++..+...+ |+|..+.- ...+...| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 3444 56777888777665544 45555543 11234455 68888887777777766
No 266
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.92 E-value=84 Score=25.43 Aligned_cols=54 Identities=6% Similarity=0.113 Sum_probs=43.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC-----------CCCEEEEEEcChhHHHH
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----------SGTTGIVDYTNYDDMKH 161 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----------~~~~~~v~f~~~~~a~~ 161 (260)
...|.+.|+...++-..+...|-+||.|+.|.++.+. ......+.|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 3467888999999999999999999999999998775 11367888888876654
No 267
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=39.97 E-value=63 Score=20.89 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh-cCCccEEEecCCCCCCceEEEEecC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEE 54 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~ 54 (260)
...-|||++++..+-+.--..+-+. .++=.-+-+..+....||+|-++-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456999999887765544444333 2332222223344567888887765
No 268
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=39.31 E-value=90 Score=20.23 Aligned_cols=66 Identities=11% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhh-cC-CccEEEecCCCCC----CceEEEEecChHHHHHHHHhCCCC
Q 024935 2 SSRASRTLYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGY 68 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~----~g~afV~f~~~~~a~~a~~~l~~~ 68 (260)
+++.++.||. +|-..++-..|.+.|+. .| ...++++..+|.. +--+=+.|++-+..++..+.+-|.
T Consensus 30 v~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 30 VDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 3567778877 88888998899998873 34 3445555433211 123445677777777776655543
No 269
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=38.56 E-value=93 Score=18.97 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=38.0
Q ss_pred HHHHHHHhhcC-CccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++|.+-|...| +|..+.-+. +..+....||+.+...+...+ ++=..+.+..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 56788888888 555554422 455667888888876553333 33456778888888754
No 270
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=38.35 E-value=40 Score=21.58 Aligned_cols=16 Identities=6% Similarity=0.190 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHhcCC
Q 024935 119 SASWQDLKDHMRRAGD 134 (260)
Q Consensus 119 ~~~~~~l~~~f~~~g~ 134 (260)
..+.++|.+++..|..
T Consensus 61 ~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 61 EPTQEEVDDFLGGYDA 76 (85)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4577888888777754
No 271
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=37.36 E-value=12 Score=22.86 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFY 28 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~ 28 (260)
.-+++||||.||..+-.++=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3578999999999876665444443
No 272
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=36.41 E-value=85 Score=20.51 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHhcCC-ccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC
Q 024935 115 GLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (260)
Q Consensus 115 nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~ 168 (260)
.+.+..+...|...|..-|. -.-..+-.|--.-+|.|.|.+.+.+..|...|-.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 34566677777766665553 2223333333334899999999999999887654
No 273
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.20 E-value=1.1e+02 Score=19.14 Aligned_cols=59 Identities=7% Similarity=0.155 Sum_probs=36.6
Q ss_pred EEecCCCCCCCHHHHHHHHHh-------cCCccEEEEEeCCCC--CEEEEEEcChhHHHHHHHHcCCcc
Q 024935 111 VLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSE 170 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-------~g~v~~~~~~~~~~~--~~~~v~f~~~~~a~~a~~~l~~~~ 170 (260)
+...++|..++.++|.+.... +..|..+........ -||+.+-.+.+...++.+.- |..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCC
Confidence 344578888898888876553 334555555555333 47777767777777666643 443
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=35.75 E-value=1.1e+02 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEE--EecChHHHHHHHHhCCCCc
Q 024935 17 DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFV--EFEEARDAEDAIRGRDGYD 69 (260)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV--~f~~~~~a~~a~~~l~~~~ 69 (260)
...++.|..|...++ +..+++.. .|+.+ |..| .|.+.++|..|+..|....
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 345778888888876 45555533 34433 4333 3899999999999887543
No 275
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=35.70 E-value=62 Score=28.25 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcc
Q 024935 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (260)
Q Consensus 119 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~ 170 (260)
-+++++|-+-|.-+..-.+.+.+... ..++-+.|.+.++|++-.+.+..+.
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFegd-dc~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFEGD-DCQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred eeehHHhhhhceeccCccceeeeccc-cceeeecccCHHHHHHHHHHHHHHh
Confidence 45888888877755544444444322 2366688999999998887765443
No 276
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.05 E-value=39 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=28.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEE
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 141 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 141 (260)
.++|+-|+|..++++.|..+..+.|.+..+...
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 479999999999999999999999976655443
No 277
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.62 E-value=64 Score=25.73 Aligned_cols=44 Identities=23% Similarity=0.124 Sum_probs=30.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
....|+|||++++-.-|..++...-.+. ..|.+...|-|+.-+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~-------------~~v~M~QkEva~Rl~A 139 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQ-------------DMVLMVQKEVAERLVA 139 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccc-------------eEEEEeHHHHHHHHhC
Confidence 4567999999999999999987554332 2344444566666555
No 278
>PRK11901 hypothetical protein; Reviewed
Probab=34.55 E-value=1.6e+02 Score=24.35 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHhcCCccEEEEEeC---CCCCEEEE--EEcChhHHHHHHHHcCCccc
Q 024935 120 ASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIV--DYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 120 ~~~~~l~~~f~~~g~v~~~~~~~~---~~~~~~~v--~f~~~~~a~~a~~~l~~~~~ 171 (260)
..++.|..+..+++ +..+.++.. ...+|..| .|.+.++|..|+..|-....
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 35777888877775 333455443 33345544 58999999999998865443
No 279
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=34.53 E-value=1.8e+02 Score=21.02 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=22.2
Q ss_pred EeCCCCCEEEEEEcChhHHHHHHHHcCC
Q 024935 141 FRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (260)
Q Consensus 141 ~~~~~~~~~~v~f~~~~~a~~a~~~l~~ 168 (260)
....-.||.||+....+++..++..+.+
T Consensus 41 vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 41 APPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred ccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 3444678999999988888888887755
No 280
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.53 E-value=75 Score=29.10 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=50.9
Q ss_pred EEEcCCC--CCCCHHHHHHHHhhcCCccE-----EEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 9 LYVGNLP--GDIREREVEDLFYKYGPIAH-----IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 9 l~v~nl~--~~~t~~~l~~~F~~~G~v~~-----~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+|| |+- ..++..+|..++..-+.|.. |.|. ..|.||+... +.|...+..|++..+.|+.|.|+.+.
T Consensus 489 ~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 489 YRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 455 664 35899999998887765544 4443 4599999875 66888999999999999999999874
No 281
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=34.07 E-value=15 Score=22.42 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC
Q 024935 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
++|.+.|..++....+- +-.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 57777776554332221 2268999999999888776543
No 282
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.95 E-value=46 Score=23.65 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=27.8
Q ss_pred EEEcCCCCC-CCHHHHHHHHhhcCCccEEEecCC
Q 024935 9 LYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIP 41 (260)
Q Consensus 9 l~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~ 41 (260)
|-|.|||.. .+++-|..+.+.+|++..+.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 567799987 788889999999999999988543
No 283
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.88 E-value=55 Score=26.11 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=43.7
Q ss_pred CcceEEecCCCCC------------CCHHHHHHHHHhcCCccEEEEEeCC---------C-----CCE---------EEE
Q 024935 107 SEYRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDG---------S-----GTT---------GIV 151 (260)
Q Consensus 107 ~~~~~~v~nl~~~------------~~~~~l~~~f~~~g~v~~~~~~~~~---------~-----~~~---------~~v 151 (260)
...+|++.+||-. .++.-|...|..||.|..|.|+.-. . .+| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457777777742 3577899999999999888876321 1 112 455
Q ss_pred EEcChhHHHHHHHHcCCcccc
Q 024935 152 DYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 152 ~f~~~~~a~~a~~~l~~~~~~ 172 (260)
+|....-...|+..|.|..+.
T Consensus 228 qfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHH
Confidence 665555666777777776654
No 284
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=33.88 E-value=1.5e+02 Score=22.45 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=34.5
Q ss_pred CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC
Q 024935 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
+.++..+++..++.-. +.|+.++...|-+-+...+.++|..|+..+-
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 5677788888776433 4556666666667777899999999987753
No 285
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.73 E-value=10 Score=33.19 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=51.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
...+.+++.|++++++-.+|..++..+-.+..+.+...... .+++|.|.---....|+-.||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 44578899999999999999999998877666655444222 267899988777788888888776654
No 286
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=33.41 E-value=1.5e+02 Score=19.89 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCccEEEe-cCCCCCCceEEEEecChHHHHHHHH
Q 024935 21 REVEDLFYKYGPIAHIDL-KIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.+|..++..+| |..-.| .....+.-||++++.+.+..-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 46778888888 554444 3333456699999996665555554
No 287
>PRK02886 hypothetical protein; Provisional
Probab=33.21 E-value=97 Score=20.03 Aligned_cols=51 Identities=18% Similarity=0.396 Sum_probs=32.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (260)
-.||+.+| .++++ +..||.|..+.=. ..|+ |.|.+.++|+..++.|....|
T Consensus 8 lIVyl~~~------k~~r~-LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 8 IIVWLHSL------KQAKQ-LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred EEEEEeec------HhHHH-HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 34666554 23333 4589998876442 3354 457788999999988876554
No 288
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=32.75 E-value=99 Score=20.45 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=27.6
Q ss_pred eEEEcCCCCCCCHHHHHH---HHhhcCCccEEEe-----cCCCCCCceEEEEecC
Q 024935 8 TLYVGNLPGDIREREVED---LFYKYGPIAHIDL-----KIPPRPPGYAFVEFEE 54 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~---~F~~~G~v~~~~~-----~~~~~~~g~afV~f~~ 54 (260)
..|+.+||.++.+.++.. +|..++.-..|.. .....+.|++.+.+..
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ae 66 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVAE 66 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEEE
Confidence 358899999998877655 4444443344444 2345566666666553
No 289
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=32.58 E-value=1.1e+02 Score=23.76 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEE-ecCC------CCCCceEEEEecChHHHHHHHHh
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIP------PRPPGYAFVEFEEARDAEDAIRG 64 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~-~~~~------~~~~g~afV~f~~~~~a~~a~~~ 64 (260)
++-|.-||..-.++-++.+|++.|=-+.+. +.-+ |.+. |..|+....--...|+..
T Consensus 120 ~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~H 182 (245)
T PF12623_consen 120 EVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNH 182 (245)
T ss_pred EEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhh
Confidence 466778888889999999999999433322 2111 3444 888888877777777764
No 290
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=32.40 E-value=84 Score=20.85 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC
Q 024935 16 GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 16 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
..-++++|..+...=|.|.+|.+..+.-..=.+.+...+..+++..++.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3445778888888778999999943322233567778999999999987764
No 291
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.02 E-value=26 Score=29.46 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCCCH--------HHHHHHHhh--cCCccEEEecC---CCCCCceEEEEecChHHHHHHHH
Q 024935 7 RTLYVGNLPGDIRE--------REVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 7 ~~l~v~nl~~~~t~--------~~l~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
+.+|+.+++..... +++...|.. .+++..+.+.. .....|..|++|...+.|+.++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34666666655433 488999998 67777777722 45678889999999999999875
No 292
>PHA01632 hypothetical protein
Probab=31.76 E-value=56 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 024935 9 LYVGNLPGDIREREVEDLFYK 29 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~ 29 (260)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456688999999999987654
No 293
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=31.60 E-value=1.3e+02 Score=18.52 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHHHHHHhhcC-CccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+|.+-|..+| +|..+.-+. +..+...-||+.....+... .|+=..+.|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888888888 555555532 24456677888776544333 244456788888887654
No 294
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.56 E-value=1.5e+02 Score=19.14 Aligned_cols=44 Identities=9% Similarity=-0.063 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHHH
Q 024935 122 WQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 122 ~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 165 (260)
.+.++++++..| ++..+.+...+......+++.+.+.|..+.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHH
Confidence 456777787776 67777777666555677888888877766644
No 295
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=30.42 E-value=36 Score=20.39 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=9.3
Q ss_pred HHHHHHHhhcCCccE
Q 024935 21 REVEDLFYKYGPIAH 35 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~ 35 (260)
=||.+++.+||.+..
T Consensus 5 yDVqQLLK~fG~~IY 19 (62)
T PF06014_consen 5 YDVQQLLKKFGIIIY 19 (62)
T ss_dssp HHHHHHHHTTS----
T ss_pred HHHHHHHHHCCEEEE
Confidence 378899999996554
No 296
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=30.30 E-value=2e+02 Score=20.36 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCCCCceEEEEecChHHHHHHHHhCCC
Q 024935 41 PPRPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
....+||-||++....+...++..+.|
T Consensus 34 p~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 34 PESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred cCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 345789999999988888888876665
No 297
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=29.38 E-value=2.2e+02 Score=23.67 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=31.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEec
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (260)
++|..++|+|-+-.+---+.|.+....-|--..-..+. ..+.|.|-|...
T Consensus 78 ~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~-d~~TGtCavli~ 127 (343)
T KOG2854|consen 78 QQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKE-DGPTGTCAVLIT 127 (343)
T ss_pred cCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEecc-CCCCceEEEEEe
Confidence 45779999999988777777777777666322222233 334555555443
No 298
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=28.69 E-value=1.6e+02 Score=22.49 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=35.7
Q ss_pred CCHHHHHHHHhhcCC---ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
.+.+++.+....+|. |...++..-+..++=+...-.++++|..+...|-|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467888888887774 344444444555653333445789999998888888775
No 299
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=28.03 E-value=1.6e+02 Score=18.55 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCH-------HHHHHHHHhc
Q 024935 60 DAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASW-------QDLKDHMRRA 132 (260)
Q Consensus 60 ~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~-------~~l~~~f~~~ 132 (260)
+|+. .+.-...|+.+++.|+.... ..+.+-++..|-|..+.+ ..|++.|.-.
T Consensus 13 ~~~~-~~~pp~~g~~~Ki~Y~tQv~--------------------~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~ 71 (80)
T PF14714_consen 13 KALE-RHPPPSKGKRLKIYYATQVG--------------------TRPPTFVLFVNDPELLPESYKRYLENQLREAFGFE 71 (80)
T ss_dssp HHHC-CS--SETTCC--EEEEEEEE--------------------TTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--T
T ss_pred HHHH-hCCCCCCCceeEEEEEEeCC--------------------CCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCC
Confidence 3444 33333488999999986422 223355666677777764 4566666655
Q ss_pred CCccE
Q 024935 133 GDVCF 137 (260)
Q Consensus 133 g~v~~ 137 (260)
|..+.
T Consensus 72 G~Pi~ 76 (80)
T PF14714_consen 72 GVPIR 76 (80)
T ss_dssp TS--E
T ss_pred ceeEE
Confidence 54443
No 300
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=27.99 E-value=1e+02 Score=17.64 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGP 32 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~ 32 (260)
..++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 45677777668888999999999986
No 301
>PF14893 PNMA: PNMA
Probab=27.62 E-value=48 Score=27.48 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=20.3
Q ss_pred cceEEecCCCCCCCHHHHHHHHHh
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRR 131 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~ 131 (260)
...|.|.+||.+|++.+|++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 356889999999999999988764
No 302
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=27.38 E-value=60 Score=21.39 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=16.5
Q ss_pred ceEEEEecChHHHHHHHHhC
Q 024935 46 GYAFVEFEEARDAEDAIRGR 65 (260)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l 65 (260)
-|++++|.+.+...+|...+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48899999999888887754
No 303
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=26.26 E-value=58 Score=25.91 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHh
Q 024935 6 SRTLYVGNLPGDIREREVEDLFY 28 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~ 28 (260)
...++|+|||++++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45689999999999999999887
No 304
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.09 E-value=1.5e+02 Score=17.45 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHH
Q 024935 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (260)
Q Consensus 121 ~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 164 (260)
.-.+|.+.|.+.| .|..+.+......+...+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 5677888888887 6767766555444444455566666666665
No 305
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=26.08 E-value=1.4e+02 Score=28.02 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=39.9
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhhcC-CccEEEecCCCC-CCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 8 TLYVGNLP--GDIREREVEDLFYKYG-PIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 8 ~l~v~nl~--~~~t~~~l~~~F~~~G-~v~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
-|+|.+-. ..++...+.++|..|| +|+-+.+.+++. .+.- -.=.++-++||..||.....-..|+.
T Consensus 311 ~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E----~IL~~eF~~ai~yLNqflp~e~rl~~ 380 (868)
T KOG1888|consen 311 DIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRE----SILREEFENAIDYLNQFLPPENRLKY 380 (868)
T ss_pred CeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchh----HHHHHHHHHHHHHHhccCCCcceeee
Confidence 35555554 5688899999999998 666677766542 2211 11234556677777754444444443
No 306
>PRK02302 hypothetical protein; Provisional
Probab=25.40 E-value=2e+02 Score=18.72 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=26.8
Q ss_pred HhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc
Q 024935 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (260)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (260)
+.+||.|..+.=. ..|+ |-|.+.++|+..++.|....|
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4589998776442 3355 457788999999988876554
No 307
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=25.37 E-value=1.5e+02 Score=23.10 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.5
Q ss_pred CCHHHHHHHHhhcCCcc
Q 024935 18 IREREVEDLFYKYGPIA 34 (260)
Q Consensus 18 ~t~~~l~~~F~~~G~v~ 34 (260)
+|+.+|.+.|.++|-+.
T Consensus 162 mte~ql~~vf~KhGLek 178 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLEK 178 (236)
T ss_pred HHHHHHHHHHHHcCcee
Confidence 58899999999999544
No 308
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=25.06 E-value=1.5e+02 Score=21.90 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHhcCCccEEE
Q 024935 118 SSASWQDLKDHMRRAGDVCFSQ 139 (260)
Q Consensus 118 ~~~~~~~l~~~f~~~g~v~~~~ 139 (260)
..+|.++|.++|.+|++-..+.
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~e 128 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHCE 128 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEEE
Confidence 5789999999999999744443
No 309
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=25.04 E-value=1.1e+02 Score=23.56 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=25.8
Q ss_pred EEcCCCCCCCHHHHH--------HHHhhcCCccEEEecCCCCCCceEEEEecChH
Q 024935 10 YVGNLPGDIREREVE--------DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (260)
Q Consensus 10 ~v~nl~~~~t~~~l~--------~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (260)
|+-.||..++.++-. ++|..+|-+.++-|..++.....|-|.|.+-.
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~R~ 125 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTTRP 125 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--B-
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeecCc
Confidence 455899998887733 34556788888888644444557888776643
No 310
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=25.00 E-value=1.4e+02 Score=21.62 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=35.0
Q ss_pred eEEEcCCC-CCCCHHHHHHHHhhcC-C-ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC
Q 024935 8 TLYVGNLP-GDIREREVEDLFYKYG-P-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 8 ~l~v~nl~-~~~t~~~l~~~F~~~G-~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
.+|+|+|. ...+-++|+..+.... + +.++... .-...+-+.|+|.-+.+|..-|..|-.
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~-~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVR-KVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceee-ccccCceEEEEEechHHHHHHHHHHhh
Confidence 35677775 1234445555554332 2 2333332 223467999999999999887776543
No 311
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.94 E-value=2.5e+02 Score=19.66 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=48.0
Q ss_pred CCceEEEcCCCCC---CCHHHHHHHHhhcC-CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~---~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+...|.|...... .+...|.+++..-| .++.+... .+...|.|.++++-.+|...|....-++..|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3455677665333 56677888888777 34455443 347889999999988888877766655656655544
No 312
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=24.44 E-value=1.7e+02 Score=25.98 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHHHHHHh----hcCCccEEEecCC--CCCCceEEEEecChHHHHHHHHhCC
Q 024935 20 EREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 20 ~~~l~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
.-+|..+|. .+|-|..+.+... .......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346677765 7888998888332 2334577888999999999987654
No 313
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.32 E-value=47 Score=20.42 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.2
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 48999997544
No 314
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=23.98 E-value=69 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=16.6
Q ss_pred cCCCCCCCHHHHHHHHhhcCC
Q 024935 12 GNLPGDIREREVEDLFYKYGP 32 (260)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G~ 32 (260)
|.|...+++++|.+++.....
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISE 95 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCC
T ss_pred CCCCCCcCHHHHHHHHHHHhh
Confidence 678889999999999998764
No 315
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.57 E-value=36 Score=28.17 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCc
Q 024935 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (260)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~ 169 (260)
+...|.+.+.+.|.|..-.++..-+-|.+||-.-..+++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4677888888999887766666666677899999999999999998875
No 316
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.31 E-value=57 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=7.5
Q ss_pred CCceEEEEec
Q 024935 44 PPGYAFVEFE 53 (260)
Q Consensus 44 ~~g~afV~f~ 53 (260)
.+||+||+=.
T Consensus 12 ~KGfGFI~~~ 21 (74)
T PRK09937 12 AKGFGFICPE 21 (74)
T ss_pred CCCeEEEeeC
Confidence 3899999744
No 317
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=22.90 E-value=1.1e+02 Score=25.25 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=33.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe-----cC------C--CCCCceEEEEecChHHHHHHHH
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL-----KI------P--PRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~-----~~------~--~~~~g~afV~f~~~~~a~~a~~ 63 (260)
..+||.++--.+.++-|..+-+..-+...+.+ +. + .....|+.|.|.++++|.+..+
T Consensus 161 ~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 161 KVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred eEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHH
Confidence 45667777666666665555443332222111 00 0 1234699999999999998777
No 318
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=22.49 E-value=29 Score=20.97 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=30.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccE-EEecCCCCCCceEEE-EecChHHHHHHHHhCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKIPPRPPGYAFV-EFEEARDAEDAIRGRD 66 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~-~~~~~~~~~~g~afV-~f~~~~~a~~a~~~l~ 66 (260)
-.|.|+.+...-..+.+..-+...|.-.. +.+. .+...--.+| .|.+.++|..++..|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~-~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVS-KGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEE-EETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEe-cCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 35666666554444445555554454322 2222 1222222333 5899999999988776
No 319
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.45 E-value=59 Score=19.72 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=19.6
Q ss_pred CCceEEEEecCh-HHHH---HHHHhCCC--CccCCcEEEEEEccC
Q 024935 44 PPGYAFVEFEEA-RDAE---DAIRGRDG--YDFDGHRLRVELAHG 82 (260)
Q Consensus 44 ~~g~afV~f~~~-~~a~---~a~~~l~~--~~~~g~~i~v~~~~~ 82 (260)
.+||+||+=.+. +++- .++. ..+ ..-.|..+.......
T Consensus 12 ~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~ 55 (68)
T TIGR02381 12 AKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQG 55 (68)
T ss_pred CCCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEEC
Confidence 389999986552 2222 2332 122 233466666665543
No 320
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=22.40 E-value=3.2e+02 Score=23.72 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=39.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcC----CccEEEEEeCCCCC------------EEEEEEcChhHHHHHHHHcCCc
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAG----DVCFSQVFRDGSGT------------TGIVDYTNYDDMKHAIKKLDDS 169 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g----~v~~~~~~~~~~~~------------~~~v~f~~~~~a~~a~~~l~~~ 169 (260)
+..|.+.+-.|-++.+.|++++..+. .+.-+....+.+.| .+.|+.++..++++.+...|.-
T Consensus 97 g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtG 174 (460)
T COG1207 97 GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTG 174 (460)
T ss_pred CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeee
Confidence 35677777778889999998777653 22222222222222 5778888888888888776653
No 321
>PRK10943 cold shock-like protein CspC; Provisional
Probab=22.09 E-value=59 Score=19.83 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=8.1
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+=.+
T Consensus 14 ~kGfGFI~~~~ 24 (69)
T PRK10943 14 SKGFGFITPAD 24 (69)
T ss_pred CCCcEEEecCC
Confidence 48999998543
No 322
>PRK14998 cold shock-like protein CspD; Provisional
Probab=22.09 E-value=64 Score=20.00 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.1
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 38999997543
No 323
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.80 E-value=84 Score=25.77 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.1
Q ss_pred EEEEEcChhHHHHHHHHcCCccc
Q 024935 149 GIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 149 ~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
|||+|++..+|+.|.+.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 69999999999999996555543
No 324
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=21.77 E-value=2.3e+02 Score=18.21 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=7.6
Q ss_pred CCCCCCHHHHHHHHh
Q 024935 14 LPGDIREREVEDLFY 28 (260)
Q Consensus 14 l~~~~t~~~l~~~F~ 28 (260)
+|.+.+-.++..+..
T Consensus 22 v~~~~tv~~~~~~lr 36 (87)
T cd01612 22 ISATQSFQAVIDFLR 36 (87)
T ss_pred eCCCCCHHHHHHHHH
Confidence 455555555555444
No 325
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.63 E-value=58 Score=19.97 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=8.1
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 38999998543
No 326
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=21.63 E-value=91 Score=20.48 Aligned_cols=23 Identities=48% Similarity=0.788 Sum_probs=18.4
Q ss_pred CceEEEEecChHHHHHHHHhCCC
Q 024935 45 PGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
.||.||++...+.+..++..+.|
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCC
Confidence 49999999877777777876666
No 327
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=21.32 E-value=62 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.1
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 38999998544
No 328
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.17 E-value=2.1e+02 Score=17.40 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=34.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (260)
.+|.|.++.-.-=...+...+.....|..+.+.. ..+-++|+|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l---~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDL---EKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEc---ccCeEEEEEcC
Confidence 4677777777766778888999888888888852 24569999988
No 329
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.12 E-value=1.1e+02 Score=24.04 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=19.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc
Q 024935 8 TLYVGNLPGDIREREVEDLFYKY 30 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~ 30 (260)
-+.|+|||++++..-|..++..+
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~ 118 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKP 118 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccC
Confidence 37899999999999999998633
No 330
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=21.10 E-value=1.3e+02 Score=27.57 Aligned_cols=39 Identities=8% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP 41 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~ 41 (260)
+..+..+|+.+|..++.++.-.++|....-+..+.|...
T Consensus 298 g~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~ 336 (618)
T PRK05192 298 GLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRP 336 (618)
T ss_pred CCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeec
Confidence 356788999999999999999999999988888888643
No 331
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=20.91 E-value=1.8e+02 Score=16.65 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=23.8
Q ss_pred EEcCCCCCCCHHHHHHHHhhcC-CccEEEecCCC-CCCceEEEEecC
Q 024935 10 YVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEE 54 (260)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~ 54 (260)
+|..-...-.-.+|..+|..+| .|..+...... .......+.+.+
T Consensus 3 ~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 3433333345677888888886 56666663322 223334444444
No 332
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=20.85 E-value=2.4e+02 Score=19.25 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=6.7
Q ss_pred CCCCCCHHHHHHHHh
Q 024935 14 LPGDIREREVEDLFY 28 (260)
Q Consensus 14 l~~~~t~~~l~~~F~ 28 (260)
+|.+++-.++..++.
T Consensus 47 Vp~~~tv~~f~~~ir 61 (112)
T cd01611 47 VPSDLTVGQFVYIIR 61 (112)
T ss_pred ecCCCCHHHHHHHHH
Confidence 344444444444443
No 333
>COG5584 Predicted small secreted protein [Function unknown]
Probab=20.82 E-value=98 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHhhcCCccEEEec
Q 024935 13 NLPGDIREREVEDLFYKYGPIAHIDLK 39 (260)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~v~~~~~~ 39 (260)
||....--.-+++.|.++|+|..-++.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~ 55 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIV 55 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEE
Confidence 556666667788999999999887774
No 334
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=20.69 E-value=2e+02 Score=19.92 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=6.9
Q ss_pred CceEEEEecChH
Q 024935 45 PGYAFVEFEEAR 56 (260)
Q Consensus 45 ~g~afV~f~~~~ 56 (260)
=||-||.|.+++
T Consensus 97 DGFLYi~Ys~e~ 108 (121)
T PTZ00380 97 DGFLYVSVRTEQ 108 (121)
T ss_pred CCeEEEEEcccc
Confidence 356666666543
No 335
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=20.68 E-value=64 Score=29.20 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=51.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
+||+.|-...-+..-+..++...+++....++. .....+-|+++|..+..+..|.. |.++.+....+++.
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSH 585 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceecc
Confidence 678877777777777888888888887777732 34456689999999998877766 77777766555443
No 336
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=20.41 E-value=56 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhhcCCccE
Q 024935 13 NLPGDIREREVEDLFYKYGPIAH 35 (260)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~v~~ 35 (260)
.|...+|+++|.+....++++..
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~~ 27 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIPN 27 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCCC
Confidence 46677899999999988876654
No 337
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.33 E-value=2.7e+02 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh
Q 024935 7 RTLYVGNLPGDIREREVEDLFY 28 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~ 28 (260)
++|.|..||+.++.+.+.+.+.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~ 247 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIA 247 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHH
Confidence 6899999999999888887654
No 338
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=20.26 E-value=1.1e+02 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 44 PPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 44 ~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
..+.|||+|++...|+.|.+..-+..+.+.
T Consensus 356 ~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~ 385 (827)
T COG5594 356 PTKSGFITFKSQASAQIAAQSQIYSRVLGK 385 (827)
T ss_pred ccccEEEEEehhHHHHHHHHhhhhhhhhcc
Confidence 356999999999999999886544444443
No 339
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=20.25 E-value=75 Score=18.85 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=9.2
Q ss_pred CCceEEEEecCh
Q 024935 44 PPGYAFVEFEEA 55 (260)
Q Consensus 44 ~~g~afV~f~~~ 55 (260)
.+||+||+-.+.
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 378999997653
No 340
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=20.19 E-value=60 Score=19.54 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=15.5
Q ss_pred HHhhcCCccEEEecCCCCCCceEEEEecC
Q 024935 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (260)
Q Consensus 26 ~F~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (260)
+|+.=|+|.+++ -.||+|.|.-
T Consensus 31 ife~~GEvl~ik-------gdYa~vr~~~ 52 (67)
T PF11910_consen 31 IFEGPGEVLDIK-------GDYAQVRFRV 52 (67)
T ss_pred eecCCCeEEEec-------CCEEEEEecC
Confidence 467778887764 2389998853
No 341
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=20.17 E-value=1.1e+02 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=17.7
Q ss_pred CceEEEcCCC-CCCCHHHHHHHH
Q 024935 6 SRTLYVGNLP-GDIREREVEDLF 27 (260)
Q Consensus 6 ~~~l~v~nl~-~~~t~~~l~~~F 27 (260)
+|.|||++.- .++|.+++.+|-
T Consensus 110 nNklYvg~~~~RdLT~~E~~EL~ 132 (159)
T cd00225 110 NNKVYVGNTYARDLTPKEIAELK 132 (159)
T ss_pred CCEEEECCEEeccCCHHHHHHHH
Confidence 6889999884 678999888774
No 342
>COG1160 Predicted GTPases [General function prediction only]
Probab=20.13 E-value=6e+02 Score=22.27 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=34.0
Q ss_pred cCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCC-------HHHHHHHHHhcCCccEEEEEe
Q 024935 70 FDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS-------WQDLKDHMRRAGDVCFSQVFR 142 (260)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~-------~~~l~~~f~~~g~v~~~~~~~ 142 (260)
..|+.+++.|+..... .+.+.+...|-|..+. +..|++.|.-.|....+.+..
T Consensus 378 ~~G~r~ki~Ya~q~~~--------------------~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~ 437 (444)
T COG1160 378 RYGRRLKIKYATQVST--------------------NPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKK 437 (444)
T ss_pred cCCceEEEEEEecCCC--------------------CCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEec
Confidence 3499999999875332 2334555556665554 456777777777766665544
Q ss_pred C
Q 024935 143 D 143 (260)
Q Consensus 143 ~ 143 (260)
.
T Consensus 438 ~ 438 (444)
T COG1160 438 K 438 (444)
T ss_pred C
Confidence 3
No 343
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=20.04 E-value=7e+02 Score=23.03 Aligned_cols=65 Identities=8% Similarity=0.119 Sum_probs=43.9
Q ss_pred eEEec-CCCCCCCHHHHHHHHHhcCCc-----cEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 110 RVLVT-GLPSSASWQDLKDHMRRAGDV-----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 110 ~~~v~-nl~~~~~~~~l~~~f~~~g~v-----~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
.++|. +-...++..+|..++..-+.| -.|.|+.+ |.||+.. ...|...+..|++..+.|+.+...
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~----~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS----HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC----ceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 34443 334567888888888766644 34666555 7788754 455788889999999999765433
Done!