Query 024935
Match_columns 260
No_of_seqs 303 out of 2233
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 17:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.6E-35 5.5E-40 227.2 15.9 158 4-178 13-175 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 1.6E-34 5.6E-39 219.4 19.3 178 4-183 2-202 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 1.1E-33 3.8E-38 208.8 18.1 155 7-178 1-161 (166)
4 1fxl_A Paraneoplastic encephal 100.0 2E-33 6.8E-38 207.6 19.1 153 5-176 1-160 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.1E-33 7.3E-38 207.7 19.3 150 5-173 2-158 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 3.3E-33 1.1E-37 211.8 18.3 160 4-178 11-177 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-32 5.5E-37 219.5 23.0 174 3-177 6-276 (282)
8 2adc_A Polypyrimidine tract-bi 100.0 1.8E-32 6.2E-37 212.5 20.6 172 3-177 31-221 (229)
9 1qm9_A Polypyrimidine tract-bi 100.0 3.4E-32 1.2E-36 206.6 20.6 170 6-178 3-191 (198)
10 2yh0_A Splicing factor U2AF 65 100.0 1.1E-31 3.6E-36 203.8 22.1 176 4-187 2-193 (198)
11 3nmr_A Cugbp ELAV-like family 100.0 2.1E-32 7.3E-37 203.6 17.7 151 5-173 2-163 (175)
12 2qfj_A FBP-interacting repress 100.0 3.6E-32 1.2E-36 209.2 18.9 166 5-178 27-199 (216)
13 2g4b_A Splicing factor U2AF 65 100.0 6.3E-32 2.2E-36 200.6 18.5 152 4-178 2-168 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 4.1E-33 1.4E-37 207.6 11.8 160 3-185 10-171 (175)
15 2cjk_A Nuclear polyadenylated 100.0 2.8E-32 9.7E-37 201.5 12.1 152 4-177 1-159 (167)
16 3sde_A Paraspeckle component 1 100.0 1.4E-30 4.6E-35 205.8 17.6 141 4-172 20-163 (261)
17 3smz_A Protein raver-1, ribonu 100.0 1.8E-30 6E-35 207.9 18.0 158 4-177 93-257 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-30 5E-35 209.2 17.1 159 5-176 116-283 (292)
19 3smz_A Protein raver-1, ribonu 100.0 6.2E-30 2.1E-34 204.7 18.9 146 4-178 20-169 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.7E-30 1.3E-34 206.8 17.2 147 4-177 39-190 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.4E-25 4.6E-30 154.8 8.2 109 5-124 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 3.8E-23 1.3E-27 173.3 19.2 81 4-84 100-183 (437)
23 3pgw_S U1-70K; protein-RNA com 99.9 1.2E-23 4E-28 176.4 11.9 163 13-182 4-180 (437)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.2E-23 1.1E-27 138.7 8.5 78 5-82 18-98 (99)
25 3lqv_A PRE-mRNA branch site pr 99.9 2.1E-23 7.1E-28 144.0 7.3 106 2-134 4-109 (115)
26 2lxi_A RNA-binding protein 10; 99.9 1.3E-22 4.4E-27 133.7 8.1 79 6-84 1-84 (91)
27 2hvz_A Splicing factor, argini 99.9 2.5E-22 8.4E-27 135.3 9.5 100 7-117 1-100 (101)
28 2wbr_A GW182, gawky, LD47780P; 99.9 3.2E-22 1.1E-26 127.2 9.4 74 4-80 5-78 (89)
29 1sjq_A Polypyrimidine tract-bi 99.9 3.5E-22 1.2E-26 133.3 8.6 81 2-85 12-94 (105)
30 1x4a_A Splicing factor, argini 99.9 1.2E-21 4.2E-26 133.8 11.3 83 3-85 19-101 (109)
31 3s8s_A Histone-lysine N-methyl 99.9 4.5E-22 1.6E-26 135.5 8.8 79 4-82 4-85 (110)
32 2fy1_A RNA-binding motif prote 99.9 4.7E-21 1.6E-25 132.1 13.8 84 2-85 3-88 (116)
33 2lkz_A RNA-binding protein 5; 99.9 4.5E-22 1.5E-26 131.5 7.7 79 4-82 7-94 (95)
34 3r27_A HnRNP L, heterogeneous 99.9 1E-21 3.5E-26 129.7 9.2 78 3-83 18-97 (100)
35 2a3j_A U1 small nuclear ribonu 99.9 2E-21 6.9E-26 135.3 10.8 81 3-83 26-110 (127)
36 1whw_A Hypothetical protein ri 99.9 5E-21 1.7E-25 128.4 12.3 83 3-85 5-90 (99)
37 2i2y_A Fusion protein consists 99.9 2.6E-21 9E-26 139.8 11.5 132 42-178 10-142 (150)
38 2cqi_A Nucleolysin TIAR; RNA r 99.9 5.8E-21 2E-25 129.0 11.9 83 3-85 12-95 (103)
39 1x5t_A Splicing factor 3B subu 99.9 4.6E-21 1.6E-25 127.9 11.1 82 4-85 3-88 (96)
40 2dnz_A Probable RNA-binding pr 99.9 6.8E-21 2.3E-25 126.8 11.8 82 4-85 3-87 (95)
41 2x1f_A MRNA 3'-END-processing 99.9 2.5E-21 8.7E-26 129.1 9.6 80 5-84 1-83 (96)
42 2cpf_A RNA binding motif prote 99.9 2.1E-21 7.2E-26 130.0 9.0 83 3-85 2-90 (98)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.8E-21 1.3E-25 129.7 10.3 82 4-85 10-94 (102)
44 1x4d_A Matrin 3; structural ge 99.9 1.4E-21 4.8E-26 130.4 8.0 79 3-84 12-93 (102)
45 1x5s_A Cold-inducible RNA-bind 99.9 6.3E-21 2.2E-25 128.6 11.3 82 4-85 10-94 (102)
46 2ad9_A Polypyrimidine tract-bi 99.9 3E-21 1E-25 132.0 9.7 81 3-86 28-110 (119)
47 2dnm_A SRP46 splicing factor; 99.9 3.7E-21 1.3E-25 130.0 10.1 82 4-85 11-95 (103)
48 2dgx_A KIAA0430 protein; RRM d 99.9 4.4E-21 1.5E-25 127.8 10.1 81 4-84 7-91 (96)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.9E-21 9.8E-26 125.9 9.0 79 3-81 4-85 (85)
50 2dgs_A DAZ-associated protein 99.9 8.9E-21 3E-25 127.2 11.7 82 3-85 7-91 (99)
51 2div_A TRNA selenocysteine ass 99.9 3.1E-21 1.1E-25 129.4 9.3 83 2-84 5-95 (99)
52 2cq1_A PTB-like protein L; RRM 99.9 5.8E-21 2E-25 127.6 10.5 80 3-85 12-93 (101)
53 1x5u_A Splicing factor 3B subu 99.9 9E-21 3.1E-25 128.6 11.5 82 4-85 13-97 (105)
54 2d9p_A Polyadenylate-binding p 99.8 4.4E-21 1.5E-25 129.6 9.8 83 3-85 12-95 (103)
55 2dgv_A HnRNP M, heterogeneous 99.8 3.8E-21 1.3E-25 127.2 9.1 83 3-85 5-88 (92)
56 2kn4_A Immunoglobulin G-bindin 99.8 1.9E-20 6.6E-25 136.5 13.8 135 43-187 11-149 (158)
57 1nu4_A U1A RNA binding domain; 99.8 1.1E-21 3.8E-26 131.1 6.6 84 1-84 3-90 (97)
58 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.4E-21 1.2E-25 126.1 8.3 79 4-82 4-85 (87)
59 3md1_A Nuclear and cytoplasmic 99.8 4.7E-21 1.6E-25 124.3 8.8 78 6-83 1-81 (83)
60 2cq3_A RNA-binding protein 9; 99.8 1.5E-20 5.1E-25 127.0 11.6 83 3-85 12-95 (103)
61 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-20 6.5E-25 129.1 12.2 83 4-86 13-98 (115)
62 2cph_A RNA binding motif prote 99.8 1.5E-20 5.1E-25 128.0 11.5 83 3-85 12-99 (107)
63 2cq0_A Eukaryotic translation 99.8 4.4E-21 1.5E-25 129.6 8.7 82 4-85 13-97 (103)
64 2e5h_A Zinc finger CCHC-type a 99.8 8.3E-21 2.8E-25 126.1 9.9 78 4-81 14-94 (94)
65 2cpz_A CUG triplet repeat RNA- 99.8 7.7E-21 2.6E-25 131.1 10.0 82 4-85 23-107 (115)
66 2do4_A Squamous cell carcinoma 99.8 8.2E-21 2.8E-25 127.6 9.9 81 4-84 15-97 (100)
67 1wex_A Hypothetical protein (r 99.8 1.1E-20 3.6E-25 127.1 10.4 79 4-85 13-93 (104)
68 2dgp_A Bruno-like 4, RNA bindi 99.8 1.9E-20 6.5E-25 127.2 11.4 83 3-85 10-98 (106)
69 1x4c_A Splicing factor, argini 99.8 2.4E-20 8.1E-25 127.0 11.8 78 4-85 13-95 (108)
70 4a8x_A RNA-binding protein wit 99.8 7.6E-21 2.6E-25 124.7 9.0 80 4-83 2-85 (88)
71 2dgt_A RNA-binding protein 30; 99.8 2.2E-20 7.7E-25 123.4 11.3 78 3-85 7-84 (92)
72 2dgu_A Heterogeneous nuclear r 99.8 2.5E-20 8.5E-25 125.9 11.7 79 4-87 9-87 (103)
73 2jvr_A Nucleolar protein 3; RN 99.8 1E-20 3.5E-25 128.4 9.7 79 4-83 26-105 (111)
74 2dnq_A RNA-binding protein 4B; 99.8 1.9E-20 6.4E-25 123.3 10.6 78 3-85 5-82 (90)
75 1x4f_A Matrin 3; structural ge 99.8 4.6E-21 1.6E-25 129.6 7.8 79 3-84 22-103 (112)
76 1p27_B RNA-binding protein 8A; 99.8 7E-21 2.4E-25 129.3 8.7 80 4-83 21-103 (106)
77 2dnh_A Bruno-like 5, RNA bindi 99.8 1.5E-20 5E-25 127.6 10.1 82 4-85 13-99 (105)
78 1x4h_A RNA-binding protein 28; 99.8 2.1E-20 7.3E-25 128.1 11.1 82 4-85 13-103 (111)
79 3p5t_L Cleavage and polyadenyl 99.8 1.5E-21 5.2E-26 128.5 5.1 79 7-85 2-85 (90)
80 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-20 7E-25 126.5 10.4 81 3-85 12-96 (104)
81 2cqd_A RNA-binding region cont 99.8 6.7E-20 2.3E-24 126.5 13.1 82 3-85 14-98 (116)
82 2ywk_A Putative RNA-binding pr 99.8 8.4E-21 2.9E-25 126.3 8.2 80 3-82 13-94 (95)
83 2dnp_A RNA-binding protein 14; 99.8 2.3E-20 7.8E-25 122.9 10.1 78 3-85 6-83 (90)
84 1s79_A Lupus LA protein; RRM, 99.8 1.3E-20 4.4E-25 126.7 8.9 78 4-82 9-88 (103)
85 1why_A Hypothetical protein ri 99.8 2.2E-20 7.4E-25 124.8 10.0 78 4-84 15-94 (97)
86 2do0_A HnRNP M, heterogeneous 99.8 4.2E-20 1.4E-24 127.2 11.7 83 3-85 12-96 (114)
87 2cqc_A Arginine/serine-rich sp 99.8 8.3E-21 2.9E-25 126.4 7.9 79 4-82 13-94 (95)
88 3ns6_A Eukaryotic translation 99.8 4.9E-21 1.7E-25 128.5 6.5 78 5-82 5-92 (100)
89 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-20 5.3E-25 128.5 9.0 81 4-84 24-107 (110)
90 2kxn_B Transformer-2 protein h 99.8 9.5E-21 3.2E-25 132.8 8.1 82 3-84 43-127 (129)
91 2la6_A RNA-binding protein FUS 99.8 1.6E-20 5.5E-25 125.9 8.7 79 3-81 10-99 (99)
92 2cq2_A Hypothetical protein LO 99.8 2.4E-20 8.2E-25 126.2 9.5 80 2-84 21-107 (114)
93 2cpe_A RNA-binding protein EWS 99.8 3.6E-20 1.2E-24 127.3 10.4 82 4-85 13-105 (113)
94 3ulh_A THO complex subunit 4; 99.8 1.7E-20 5.7E-25 127.7 8.6 78 4-81 27-106 (107)
95 2nlw_A Eukaryotic translation 99.8 3E-20 1E-24 125.8 9.8 80 4-83 13-100 (105)
96 3ex7_B RNA-binding protein 8A; 99.8 2.2E-20 7.4E-25 131.0 9.4 83 4-86 20-105 (126)
97 2cpj_A Non-POU domain-containi 99.8 3.9E-20 1.3E-24 124.0 10.3 78 4-84 13-90 (99)
98 2cpx_A Hypothetical protein FL 99.8 3.3E-20 1.1E-24 127.9 10.2 81 4-85 23-107 (115)
99 3ucg_A Polyadenylate-binding p 99.8 3.2E-20 1.1E-24 122.0 9.6 78 5-83 5-85 (89)
100 2dng_A Eukaryotic translation 99.8 3.3E-20 1.1E-24 125.3 9.8 81 3-85 12-95 (103)
101 2dhg_A TRNA selenocysteine ass 99.8 2.9E-20 9.8E-25 125.9 9.6 83 3-85 6-92 (104)
102 2krb_A Eukaryotic translation 99.8 1.1E-20 3.8E-25 121.8 7.1 72 6-77 1-80 (81)
103 2khc_A Testis-specific RNP-typ 99.8 1.8E-20 6.3E-25 129.8 8.7 79 3-81 37-118 (118)
104 2err_A Ataxin-2-binding protei 99.8 2.5E-20 8.7E-25 127.0 9.2 79 4-82 27-106 (109)
105 2jrs_A RNA-binding protein 39; 99.8 1.7E-20 5.7E-25 127.6 8.3 80 3-82 23-105 (108)
106 1x4g_A Nucleolysin TIAR; struc 99.8 4.8E-20 1.7E-24 125.8 10.5 79 4-85 23-101 (109)
107 2dis_A Unnamed protein product 99.8 1E-19 3.6E-24 124.1 12.1 83 3-85 5-94 (109)
108 2kt5_A RNA and export factor-b 99.8 8.9E-20 3E-24 127.4 11.9 82 4-85 33-116 (124)
109 1whx_A Hypothetical protein ri 99.8 2.4E-20 8.3E-25 127.4 8.8 78 4-84 8-85 (111)
110 1u6f_A Tcubp1, RNA-binding pro 99.8 6.7E-20 2.3E-24 130.7 11.4 83 4-86 40-125 (139)
111 2xnq_A Nuclear polyadenylated 99.8 5E-20 1.7E-24 122.7 9.8 75 3-82 19-94 (97)
112 3s7r_A Heterogeneous nuclear r 99.8 4.3E-20 1.5E-24 120.8 9.2 77 3-80 8-87 (87)
113 2lea_A Serine/arginine-rich sp 99.8 3.6E-20 1.2E-24 131.0 9.4 83 4-86 45-130 (135)
114 2kvi_A Nuclear polyadenylated 99.8 3E-20 1E-24 123.8 8.4 78 3-85 7-85 (96)
115 2fc9_A NCL protein; structure 99.8 4.5E-20 1.6E-24 124.2 9.3 80 4-84 13-92 (101)
116 1p1t_A Cleavage stimulation fa 99.8 1.9E-20 6.5E-25 126.8 7.4 81 4-84 6-89 (104)
117 2cpi_A CCR4-NOT transcription 99.8 1.1E-20 3.7E-25 129.3 6.3 81 4-84 13-102 (111)
118 2mss_A Protein (musashi1); RNA 99.8 3E-20 1E-24 118.0 7.7 72 8-80 1-75 (75)
119 2ytc_A PRE-mRNA-splicing facto 99.8 4E-20 1.4E-24 120.4 8.4 76 3-81 9-85 (85)
120 2cqh_A IGF-II mRNA-binding pro 99.8 4E-20 1.4E-24 122.5 8.5 79 3-85 5-85 (93)
121 2rs2_A Musashi-1, RNA-binding 99.8 1E-19 3.4E-24 124.0 10.6 80 4-84 23-105 (109)
122 2jvo_A Nucleolar protein 3; nu 99.8 4.8E-20 1.6E-24 125.3 8.9 76 4-84 29-104 (108)
123 2dh8_A DAZ-associated protein 99.8 3E-20 1E-24 125.9 7.9 82 3-85 13-97 (105)
124 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-19 3.8E-24 121.7 10.6 76 4-84 13-90 (99)
125 2e5j_A Methenyltetrahydrofolat 99.8 4.6E-20 1.6E-24 123.1 8.4 79 4-84 17-95 (97)
126 3n9u_C Cleavage and polyadenyl 99.8 4.6E-20 1.6E-24 133.4 8.9 77 5-81 54-135 (156)
127 2cqp_A RNA-binding protein 12; 99.8 2.6E-20 9E-25 124.6 6.9 79 4-82 13-94 (98)
128 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.1E-20 3.1E-24 132.5 10.2 82 4-85 37-121 (156)
129 1wf1_A RNA-binding protein RAL 99.8 8.7E-20 3E-24 124.7 9.5 76 5-85 26-102 (110)
130 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-19 4.7E-24 131.9 11.1 82 4-85 68-152 (158)
131 1x4e_A RNA binding motif, sing 99.8 6.5E-21 2.2E-25 124.1 3.5 78 3-80 2-82 (85)
132 2m2b_A RNA-binding protein 10; 99.8 4.9E-20 1.7E-24 129.9 8.2 81 3-84 20-109 (131)
133 2ek1_A RNA-binding protein 12; 99.8 1.8E-20 6.3E-25 124.7 5.6 78 4-81 13-93 (95)
134 2la4_A Nuclear and cytoplasmic 99.8 4.9E-20 1.7E-24 124.0 7.7 76 4-82 25-100 (101)
135 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.5E-20 1.5E-24 117.8 7.1 73 7-80 1-76 (77)
136 2ki2_A SS-DNA binding protein 99.8 2.5E-20 8.7E-25 122.7 5.7 77 7-84 2-81 (90)
137 3beg_B Splicing factor, argini 99.8 8.8E-20 3E-24 125.5 8.5 79 106-187 14-93 (115)
138 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.4E-20 1.5E-24 123.9 6.8 77 4-82 17-97 (100)
139 1x4b_A Heterogeneous nuclear r 99.8 1.4E-19 4.8E-24 124.9 9.5 80 5-85 26-108 (116)
140 2cq4_A RNA binding motif prote 99.8 9.3E-20 3.2E-24 125.4 8.6 77 5-82 24-103 (114)
141 1fjc_A Nucleolin RBD2, protein 99.8 3.7E-20 1.3E-24 123.4 6.3 79 4-84 14-92 (96)
142 2dgw_A Probable RNA-binding pr 99.8 2E-19 6.9E-24 118.6 9.8 78 4-83 8-87 (91)
143 2diu_A KIAA0430 protein; struc 99.8 2.3E-19 7.8E-24 115.1 9.5 75 4-85 6-86 (96)
144 2cqg_A TDP-43, TAR DNA-binding 99.8 3.1E-19 1.1E-23 120.5 10.5 81 3-85 12-95 (103)
145 3egn_A RNA-binding protein 40; 99.8 6.5E-20 2.2E-24 131.4 7.4 82 3-84 42-131 (143)
146 1wg1_A KIAA1579 protein, homol 99.8 1.4E-19 4.9E-24 118.4 8.3 78 3-84 2-79 (88)
147 2cpy_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 124.5 8.4 78 4-82 13-93 (114)
148 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 4.2E-24 126.7 8.4 79 5-84 35-116 (124)
149 2fc8_A NCL protein; structure 99.8 1.3E-19 4.4E-24 122.2 8.2 82 3-84 12-93 (102)
150 1wg5_A Heterogeneous nuclear r 99.8 3.2E-19 1.1E-23 120.5 10.2 79 4-83 13-94 (104)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.6E-20 3.3E-24 133.6 8.1 82 4-85 70-154 (165)
152 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-19 7.2E-24 128.3 9.6 77 4-80 61-140 (140)
153 1iqt_A AUF1, heterogeneous nuc 99.8 1.3E-19 4.6E-24 115.0 7.0 72 8-80 1-75 (75)
154 1fj7_A Nucleolin RBD1, protein 99.8 4.5E-20 1.5E-24 124.2 4.9 80 4-84 15-96 (101)
155 2i2y_A Fusion protein consists 99.8 2.5E-19 8.7E-24 129.3 9.2 78 4-83 71-148 (150)
156 1wez_A HnRNP H', FTP-3, hetero 99.8 2.5E-19 8.5E-24 120.3 8.4 79 4-84 13-93 (102)
157 2hgl_A HNRPF protein, heteroge 99.8 3.1E-19 1E-23 125.6 9.2 77 4-81 42-123 (136)
158 1x5p_A Negative elongation fac 99.8 8.3E-19 2.8E-23 117.0 10.8 77 4-85 13-89 (97)
159 3beg_B Splicing factor, argini 99.8 2.8E-19 9.7E-24 122.9 8.6 76 4-83 14-94 (115)
160 2db1_A Heterogeneous nuclear r 99.8 1.7E-19 5.9E-24 124.6 7.5 77 4-81 15-96 (118)
161 1x5o_A RNA binding motif, sing 99.8 2.7E-19 9.2E-24 123.1 8.4 79 4-82 23-111 (114)
162 2f3j_A RNA and export factor b 99.8 5.4E-19 1.9E-23 130.6 10.4 80 4-83 86-167 (177)
163 1wel_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 126.5 6.6 77 4-81 23-102 (124)
164 2e5g_A U6 snRNA-specific termi 99.8 5.8E-19 2E-23 117.0 9.2 78 4-84 6-83 (94)
165 2e44_A Insulin-like growth fac 99.8 6.3E-19 2.2E-23 117.4 9.1 79 4-83 13-92 (96)
166 3q2s_C Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 137.0 8.4 77 5-81 67-148 (229)
167 1sjr_A Polypyrimidine tract-bi 99.8 1.9E-18 6.4E-23 124.0 11.0 77 7-84 47-125 (164)
168 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.8E-23 118.1 9.0 74 6-81 16-91 (109)
169 2lmi_A GRSF-1, G-rich sequence 99.8 4.3E-19 1.5E-23 120.5 6.8 77 4-81 9-90 (107)
170 1x4c_A Splicing factor, argini 99.8 1.3E-17 4.4E-22 113.4 13.5 82 103-187 10-92 (108)
171 1wf0_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4.2E-23 114.0 7.9 79 3-85 2-80 (88)
172 2dha_A FLJ20171 protein; RRM d 99.8 3.9E-19 1.3E-23 122.9 5.7 77 4-81 21-103 (123)
173 2hzc_A Splicing factor U2AF 65 99.8 1.3E-18 4.6E-23 113.6 8.0 73 3-79 3-86 (87)
174 2hgn_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 124.7 6.4 79 4-84 44-124 (139)
175 3zzy_A Polypyrimidine tract-bi 99.8 3.3E-18 1.1E-22 118.3 9.8 75 8-84 30-107 (130)
176 3d2w_A TAR DNA-binding protein 99.8 1.6E-18 5.6E-23 113.4 7.9 74 4-83 9-84 (89)
177 2e5i_A Heterogeneous nuclear r 99.8 2.9E-18 9.8E-23 118.2 9.2 77 5-84 22-103 (124)
178 2lcw_A RNA-binding protein FUS 99.6 5.3E-20 1.8E-24 127.0 0.0 81 4-84 5-96 (116)
179 2hgm_A HNRPF protein, heteroge 99.8 2.2E-18 7.5E-23 119.3 7.6 76 4-81 40-119 (126)
180 2bz2_A Negative elongation fac 99.7 4.7E-18 1.6E-22 117.6 9.1 76 4-84 37-112 (121)
181 2pe8_A Splicing factor 45; RRM 99.7 4E-18 1.4E-22 114.7 8.4 80 2-81 4-92 (105)
182 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-17 5.3E-22 114.1 11.1 74 3-79 5-84 (114)
183 2xs2_A Deleted in azoospermia- 99.7 1.4E-18 4.8E-23 117.0 5.7 79 4-84 7-87 (102)
184 2j8a_A Histone-lysine N-methyl 99.7 4.4E-18 1.5E-22 115.5 7.6 76 7-82 3-95 (136)
185 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-17 7.4E-22 121.0 10.9 130 50-180 11-148 (165)
186 2qfj_A FBP-interacting repress 99.7 1.4E-17 4.9E-22 127.5 10.0 82 4-85 123-207 (216)
187 4f02_A Polyadenylate-binding p 99.7 7.2E-18 2.5E-22 128.9 7.9 78 5-82 102-180 (213)
188 2dit_A HIV TAT specific factor 99.7 3.9E-17 1.3E-21 111.7 10.6 80 4-84 13-103 (112)
189 3md3_A Nuclear and cytoplasmic 99.7 1.3E-17 4.5E-22 122.3 8.7 78 4-81 85-165 (166)
190 3u1l_A PRE-mRNA-splicing facto 99.7 8.8E-18 3E-22 128.5 7.2 78 4-84 132-230 (240)
191 2lea_A Serine/arginine-rich sp 99.7 2.1E-17 7E-22 116.8 8.5 114 46-179 5-122 (135)
192 4fxv_A ELAV-like protein 1; RN 99.7 7.2E-17 2.5E-21 107.7 10.2 76 107-186 18-97 (99)
193 2cjk_A Nuclear polyadenylated 99.7 1.8E-17 6.3E-22 121.7 8.1 77 5-82 86-165 (167)
194 2jvr_A Nucleolar protein 3; RN 99.7 4.3E-17 1.5E-21 110.5 9.0 76 106-185 26-102 (111)
195 2g4b_A Splicing factor U2AF 65 99.7 2E-17 6.8E-22 122.1 7.8 76 5-80 93-171 (172)
196 2yh0_A Splicing factor U2AF 65 99.7 3.4E-17 1.2E-21 123.7 9.0 81 4-84 112-195 (198)
197 1fje_B Nucleolin RBD12, protei 99.7 2.1E-17 7.3E-22 122.3 7.4 77 4-82 97-173 (175)
198 2fy1_A RNA-binding motif prote 99.7 4.5E-16 1.5E-20 107.0 13.5 74 106-179 5-81 (116)
199 3nmr_A Cugbp ELAV-like family 99.7 5.3E-17 1.8E-21 120.1 8.4 77 5-81 94-175 (175)
200 3ex7_B RNA-binding protein 8A; 99.7 1.8E-16 6.3E-21 110.8 10.7 79 104-182 18-100 (126)
201 1b7f_A Protein (SXL-lethal pro 99.7 7.1E-17 2.4E-21 118.6 8.8 77 4-80 87-168 (168)
202 1l3k_A Heterogeneous nuclear r 99.7 8E-17 2.8E-21 121.4 8.8 80 5-85 103-185 (196)
203 2wbr_A GW182, gawky, LD47780P; 99.7 2.6E-16 9.1E-21 100.0 9.0 70 108-179 7-76 (89)
204 1x4a_A Splicing factor, argini 99.7 1.5E-15 5.2E-20 103.3 13.5 82 103-188 17-99 (109)
205 1sjq_A Polypyrimidine tract-bi 99.7 4.5E-16 1.5E-20 103.7 10.5 77 105-187 13-91 (105)
206 2voo_A Lupus LA protein; RNA-b 99.7 1.3E-16 4.5E-21 119.5 8.9 77 6-83 109-187 (193)
207 1fxl_A Paraneoplastic encephal 99.7 1.3E-16 4.6E-21 117.0 8.7 76 5-80 87-167 (167)
208 3v4m_A Splicing factor U2AF 65 99.7 1.2E-16 4.3E-21 107.4 7.7 79 3-81 2-95 (105)
209 3pgw_A U1-A; protein-RNA compl 99.7 2.7E-16 9.4E-21 125.3 10.2 76 4-81 205-281 (282)
210 4f25_A Polyadenylate-binding p 99.7 4.3E-16 1.5E-20 107.0 9.6 70 108-177 5-76 (115)
211 2dnm_A SRP46 splicing factor; 99.7 9.1E-16 3.1E-20 103.3 10.9 76 103-178 8-87 (103)
212 1qm9_A Polypyrimidine tract-bi 99.7 2.4E-16 8.3E-21 119.0 8.9 77 4-82 118-196 (198)
213 1x5s_A Cold-inducible RNA-bind 99.7 1.9E-15 6.4E-20 101.6 12.4 78 104-181 8-89 (102)
214 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.9E-15 1E-19 100.8 13.3 80 104-187 11-92 (103)
215 2d9p_A Polyadenylate-binding p 99.7 8.3E-16 2.9E-20 103.5 10.6 77 103-179 10-88 (103)
216 2cq3_A RNA-binding protein 9; 99.7 2.8E-15 9.5E-20 100.9 13.0 81 103-187 10-92 (103)
217 2dnq_A RNA-binding protein 4B; 99.7 1.6E-15 5.5E-20 99.5 11.4 75 105-187 5-79 (90)
218 3s8s_A Histone-lysine N-methyl 99.7 8.2E-16 2.8E-20 104.5 10.3 74 107-180 5-82 (110)
219 2dnz_A Probable RNA-binding pr 99.7 1.5E-15 5.2E-20 100.6 11.2 72 107-178 4-79 (95)
220 3tyt_A Heterogeneous nuclear r 99.7 2.1E-16 7E-21 119.7 7.7 77 4-80 121-204 (205)
221 1whw_A Hypothetical protein ri 99.7 2E-15 6.7E-20 100.9 11.6 79 106-188 6-88 (99)
222 2dgo_A Cytotoxic granule-assoc 99.7 5.9E-15 2E-19 101.4 14.3 81 103-187 10-94 (115)
223 2dgs_A DAZ-associated protein 99.6 2.1E-15 7.2E-20 100.8 11.3 74 104-178 6-83 (99)
224 2adc_A Polypyrimidine tract-bi 99.6 5.6E-16 1.9E-20 119.7 9.7 77 4-82 149-227 (229)
225 2hvz_A Splicing factor, argini 99.6 1.5E-15 5.1E-20 101.9 10.3 69 109-178 1-69 (101)
226 2e5j_A Methenyltetrahydrofolat 99.6 2.4E-15 8.3E-20 100.0 11.2 74 104-178 15-88 (97)
227 2dgu_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 100.1 12.4 74 106-187 9-82 (103)
228 1wf1_A RNA-binding protein RAL 99.6 1.5E-15 5.2E-20 103.5 10.2 68 106-177 25-93 (110)
229 2cq0_A Eukaryotic translation 99.6 2.8E-15 9.5E-20 100.9 11.3 81 104-188 11-95 (103)
230 2dgt_A RNA-binding protein 30; 99.6 4.1E-15 1.4E-19 97.9 11.9 77 104-188 6-82 (92)
231 4a8x_A RNA-binding protein wit 99.6 1.2E-15 4.2E-20 99.6 9.3 71 108-178 4-79 (88)
232 2dgx_A KIAA0430 protein; RRM d 99.6 2.9E-15 1E-19 99.4 10.9 79 105-187 6-89 (96)
233 2cpz_A CUG triplet repeat RNA- 99.6 9.9E-15 3.4E-19 100.2 13.9 81 104-188 21-105 (115)
234 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.2E-15 7.6E-20 101.2 10.4 80 105-188 9-92 (102)
235 1x5u_A Splicing factor 3B subu 99.6 3.5E-15 1.2E-19 100.8 11.4 76 103-178 10-89 (105)
236 2cpf_A RNA binding motif prote 99.6 2.4E-15 8.2E-20 100.3 10.4 77 107-187 4-87 (98)
237 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.6E-20 101.8 8.6 71 105-177 12-85 (102)
238 3r27_A HnRNP L, heterogeneous 99.6 2.3E-15 8E-20 99.2 10.1 69 105-175 18-88 (100)
239 1x4g_A Nucleolysin TIAR; struc 99.6 3.7E-15 1.3E-19 101.4 11.5 77 106-188 23-99 (109)
240 1x4h_A RNA-binding protein 28; 99.6 4.9E-15 1.7E-19 101.1 12.2 81 104-188 11-101 (111)
241 1wi8_A EIF-4B, eukaryotic tran 99.6 3.3E-15 1.1E-19 100.7 11.1 79 103-187 10-93 (104)
242 2cph_A RNA binding motif prote 99.6 4.3E-15 1.5E-19 100.7 11.7 76 103-178 10-91 (107)
243 2do0_A HnRNP M, heterogeneous 99.6 1.1E-14 3.9E-19 99.8 14.0 76 104-179 11-89 (114)
244 2dgp_A Bruno-like 4, RNA bindi 99.6 4E-15 1.4E-19 100.7 11.5 73 104-176 9-88 (106)
245 2e5h_A Zinc finger CCHC-type a 99.6 2.6E-15 9E-20 99.3 10.3 76 103-178 11-90 (94)
246 2div_A TRNA selenocysteine ass 99.6 4.7E-15 1.6E-19 99.0 11.5 83 106-188 7-94 (99)
247 2dnp_A RNA-binding protein 14; 99.6 4E-15 1.4E-19 97.5 10.9 75 105-187 6-80 (90)
248 1p27_B RNA-binding protein 8A; 99.6 4.2E-15 1.5E-19 100.6 11.0 76 105-180 20-99 (106)
249 2dgv_A HnRNP M, heterogeneous 99.6 3.6E-15 1.2E-19 98.2 10.3 74 105-178 5-80 (92)
250 3tht_A Alkylated DNA repair pr 99.6 8.9E-16 3.1E-20 123.7 8.7 77 2-81 14-97 (345)
251 2cq1_A PTB-like protein L; RRM 99.6 7.2E-15 2.5E-19 97.9 11.7 71 104-176 11-83 (101)
252 1why_A Hypothetical protein ri 99.6 2.8E-15 9.4E-20 99.8 9.7 70 106-177 15-86 (97)
253 1x5t_A Splicing factor 3B subu 99.6 3.7E-15 1.3E-19 99.0 10.3 71 107-177 4-79 (96)
254 2d9o_A DNAJ (HSP40) homolog, s 99.6 6.3E-15 2.1E-19 97.7 11.2 76 5-84 9-91 (100)
255 2kvi_A Nuclear polyadenylated 99.6 3.6E-15 1.2E-19 99.0 10.0 74 105-182 7-81 (96)
256 2jvo_A Nucleolar protein 3; nu 99.6 3.2E-15 1.1E-19 101.3 9.8 76 104-187 27-102 (108)
257 2cqc_A Arginine/serine-rich sp 99.6 8.6E-15 2.9E-19 97.0 11.7 74 103-176 10-87 (95)
258 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.3E-15 1.1E-19 96.9 9.4 73 106-178 5-81 (85)
259 2dnh_A Bruno-like 5, RNA bindi 99.6 8E-15 2.7E-19 99.0 11.7 68 106-173 13-83 (105)
260 2ad9_A Polypyrimidine tract-bi 99.6 3.8E-15 1.3E-19 101.7 10.0 72 105-178 28-101 (119)
261 2dng_A Eukaryotic translation 99.6 1.1E-14 3.9E-19 97.9 12.1 79 103-187 10-92 (103)
262 2dhg_A TRNA selenocysteine ass 99.6 1.2E-14 4.1E-19 98.0 12.1 74 104-177 5-83 (104)
263 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.2E-15 1.8E-19 96.4 10.0 73 106-178 4-80 (87)
264 3ulh_A THO complex subunit 4; 99.6 3.4E-15 1.2E-19 101.2 9.4 77 103-179 24-103 (107)
265 2x1f_A MRNA 3'-END-processing 99.6 4E-15 1.4E-19 98.8 9.5 70 108-177 2-75 (96)
266 2cpx_A Hypothetical protein FL 99.6 1.2E-14 4.2E-19 99.8 12.1 74 105-178 22-99 (115)
267 2ywk_A Putative RNA-binding pr 99.6 6E-15 2.1E-19 97.8 9.9 75 103-177 11-88 (95)
268 1u6f_A Tcubp1, RNA-binding pro 99.6 2.5E-14 8.5E-19 101.7 13.8 81 103-187 37-121 (139)
269 3md1_A Nuclear and cytoplasmic 99.6 6.8E-15 2.3E-19 94.9 9.9 69 109-177 2-74 (83)
270 1wex_A Hypothetical protein (r 99.6 9.1E-15 3.1E-19 98.0 10.8 72 105-178 12-85 (104)
271 2do4_A Squamous cell carcinoma 99.6 1.9E-14 6.5E-19 96.3 12.4 79 105-187 14-95 (100)
272 2la6_A RNA-binding protein FUS 99.6 1.3E-14 4.6E-19 96.8 11.5 76 103-178 8-95 (99)
273 2cpj_A Non-POU domain-containi 99.6 1.1E-14 3.6E-19 97.3 11.0 72 105-178 12-83 (99)
274 2kxn_B Transformer-2 protein h 99.6 4.6E-15 1.6E-19 103.8 9.6 75 103-177 41-119 (129)
275 2cqh_A IGF-II mRNA-binding pro 99.6 4.2E-15 1.4E-19 98.1 8.8 76 106-188 6-83 (93)
276 2khc_A Testis-specific RNP-typ 99.6 1.3E-14 4.5E-19 100.1 11.7 76 103-178 35-114 (118)
277 2kt5_A RNA and export factor-b 99.6 2.8E-14 9.4E-19 99.4 13.4 78 103-180 30-110 (124)
278 1jmt_A Splicing factor U2AF 35 99.6 2.5E-16 8.5E-21 105.8 2.6 69 12-80 21-103 (104)
279 1s79_A Lupus LA protein; RRM, 99.6 7.7E-15 2.6E-19 98.3 9.9 76 106-182 9-87 (103)
280 2ytc_A PRE-mRNA-splicing facto 99.6 9.4E-15 3.2E-19 94.7 10.0 72 104-177 8-80 (85)
281 1oo0_B CG8781-PA, drosophila Y 99.6 8.8E-15 3E-19 99.7 10.3 75 104-178 22-100 (110)
282 1x4e_A RNA binding motif, sing 99.6 1.5E-15 5.3E-20 98.5 6.1 71 106-176 3-77 (85)
283 2cpd_A Apobec-1 stimulating pr 99.6 2.9E-14 1E-18 95.1 12.5 76 105-188 12-89 (99)
284 2cpi_A CCR4-NOT transcription 99.6 6.4E-15 2.2E-19 100.5 9.5 80 105-188 12-101 (111)
285 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.4E-14 4.6E-19 105.1 11.7 73 106-178 37-113 (156)
286 2dh8_A DAZ-associated protein 99.6 3.1E-14 1E-18 96.1 12.6 81 103-188 11-95 (105)
287 2la4_A Nuclear and cytoplasmic 99.6 1E-14 3.4E-19 97.8 10.1 68 106-175 25-92 (101)
288 2cqd_A RNA-binding region cont 99.6 3.2E-14 1.1E-18 97.8 12.8 77 103-180 12-92 (116)
289 3s6e_A RNA-binding protein 39; 99.6 6.9E-15 2.4E-19 100.0 9.1 78 3-81 4-91 (114)
290 3ue2_A Poly(U)-binding-splicin 99.6 2.5E-15 8.7E-20 102.8 6.9 78 4-81 18-107 (118)
291 2err_A Ataxin-2-binding protei 99.6 8.4E-15 2.9E-19 99.5 9.5 74 104-177 25-100 (109)
292 2lxi_A RNA-binding protein 10; 99.6 3.8E-15 1.3E-19 97.7 7.5 75 109-187 2-82 (91)
293 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 104.3 10.5 79 107-187 45-123 (164)
294 2cpe_A RNA-binding protein EWS 99.6 1.9E-14 6.7E-19 98.4 11.3 81 104-188 11-103 (113)
295 2e44_A Insulin-like growth fac 99.6 1.4E-14 4.7E-19 96.2 10.2 75 105-179 12-87 (96)
296 2lkz_A RNA-binding protein 5; 99.6 6E-15 2E-19 97.2 8.3 71 105-175 6-86 (95)
297 2fc9_A NCL protein; structure 99.6 7.5E-15 2.6E-19 98.4 9.0 80 104-187 11-90 (101)
298 2jrs_A RNA-binding protein 39; 99.6 1.7E-14 5.6E-19 97.8 10.6 76 103-178 21-100 (108)
299 2xnq_A Nuclear polyadenylated 99.6 1.4E-14 4.9E-19 96.2 10.0 71 103-177 17-88 (97)
300 1whx_A Hypothetical protein ri 99.6 5.3E-15 1.8E-19 100.8 8.0 73 106-180 8-80 (111)
301 2a3j_A U1 small nuclear ribonu 99.6 1.5E-14 5E-19 100.5 10.3 75 105-179 26-105 (127)
302 1x4f_A Matrin 3; structural ge 99.6 1.4E-14 4.9E-19 97.8 9.9 74 105-180 22-98 (112)
303 2krb_A Eukaryotic translation 99.6 4.7E-15 1.6E-19 95.2 6.8 66 109-174 2-75 (81)
304 2hgn_A Heterogeneous nuclear r 99.6 2E-15 6.8E-20 106.5 5.5 113 46-178 2-117 (139)
305 3p5t_L Cleavage and polyadenyl 99.6 5.9E-15 2E-19 96.7 7.3 69 109-177 2-76 (90)
306 2m2b_A RNA-binding protein 10; 99.6 2.2E-14 7.4E-19 100.8 10.6 73 105-178 20-102 (131)
307 3lqv_A PRE-mRNA branch site pr 99.6 2.3E-14 8E-19 98.4 10.4 76 106-181 6-82 (115)
308 1x4b_A Heterogeneous nuclear r 99.6 3.6E-14 1.2E-18 97.5 11.1 78 106-188 25-106 (116)
309 2e5i_A Heterogeneous nuclear r 99.6 9.9E-14 3.4E-18 95.5 13.1 77 107-187 24-101 (124)
310 3ns6_A Eukaryotic translation 99.6 7.6E-15 2.6E-19 98.1 7.4 74 107-180 5-89 (100)
311 2cqp_A RNA-binding protein 12; 99.6 1.9E-14 6.6E-19 95.8 9.3 74 105-178 12-89 (98)
312 3s7r_A Heterogeneous nuclear r 99.6 2.2E-14 7.7E-19 93.3 9.4 72 105-177 8-83 (87)
313 2hgl_A HNRPF protein, heteroge 99.6 1.2E-14 4.2E-19 102.1 8.3 75 103-178 39-119 (136)
314 1x5p_A Negative elongation fac 99.6 9.5E-14 3.2E-18 92.2 12.2 76 105-188 12-87 (97)
315 3sde_A Paraspeckle component 1 99.6 7.3E-15 2.5E-19 115.6 7.9 80 4-83 94-179 (261)
316 2e5g_A U6 snRNA-specific termi 99.6 6.6E-14 2.3E-18 92.4 11.3 68 107-176 7-74 (94)
317 2dgw_A Probable RNA-binding pr 99.6 5.4E-14 1.9E-18 92.3 10.7 71 104-176 6-79 (91)
318 1p1t_A Cleavage stimulation fa 99.5 2E-14 6.8E-19 96.9 8.4 74 106-179 6-83 (104)
319 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.4E-14 4.9E-19 92.0 7.2 70 109-179 1-74 (77)
320 2ek1_A RNA-binding protein 12; 99.5 1.1E-14 3.6E-19 96.6 6.8 72 106-177 13-88 (95)
321 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 5.2E-14 1.8E-18 100.1 10.8 75 103-177 58-136 (140)
322 1wez_A HnRNP H', FTP-3, hetero 99.5 6.1E-14 2.1E-18 93.9 10.5 74 104-179 11-87 (102)
323 2nlw_A Eukaryotic translation 99.5 2.2E-14 7.6E-19 96.7 8.4 68 107-174 14-89 (105)
324 3ucg_A Polyadenylate-binding p 99.5 5.9E-14 2E-18 91.7 10.1 74 108-186 6-83 (89)
325 2f3j_A RNA and export factor b 99.5 1.1E-13 3.8E-18 102.1 12.7 80 103-182 83-165 (177)
326 2cqg_A TDP-43, TAR DNA-binding 99.5 2.4E-13 8.2E-18 91.3 13.3 78 104-187 11-92 (103)
327 2cq4_A RNA binding motif prote 99.5 3.9E-14 1.3E-18 97.1 9.5 71 106-177 23-97 (114)
328 3n9u_C Cleavage and polyadenyl 99.5 4.6E-14 1.6E-18 101.9 10.2 73 107-179 54-132 (156)
329 2cq2_A Hypothetical protein LO 99.5 2E-14 6.9E-19 97.1 7.7 64 106-171 23-88 (114)
330 1wg5_A Heterogeneous nuclear r 99.5 4.8E-14 1.6E-18 94.9 9.5 75 103-178 10-88 (104)
331 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.3E-14 4.3E-19 97.1 6.6 73 104-178 15-92 (100)
332 2mss_A Protein (musashi1); RNA 99.5 2.1E-14 7E-19 90.7 7.0 67 110-177 1-71 (75)
333 1fjc_A Nucleolin RBD2, protein 99.5 2.4E-14 8.1E-19 95.0 7.5 78 105-187 13-90 (96)
334 2diu_A KIAA0430 protein; struc 99.5 5.8E-14 2E-18 90.1 8.9 64 108-177 9-77 (96)
335 2rs2_A Musashi-1, RNA-binding 99.5 5.5E-14 1.9E-18 95.4 9.5 77 106-187 23-103 (109)
336 2db1_A Heterogeneous nuclear r 99.5 4.9E-14 1.7E-18 97.1 9.3 76 103-179 12-93 (118)
337 1nu4_A U1A RNA binding domain; 99.5 2.1E-14 7.2E-19 95.5 7.2 73 105-177 5-82 (97)
338 3zzy_A Polypyrimidine tract-bi 99.5 5.7E-14 1.9E-18 97.1 9.5 79 106-187 26-105 (130)
339 2dnn_A RNA-binding protein 12; 99.5 5.2E-14 1.8E-18 95.1 8.8 71 105-177 13-86 (109)
340 2hzc_A Splicing factor U2AF 65 99.5 5.9E-14 2E-18 91.3 8.6 68 106-176 4-82 (87)
341 2dis_A Unnamed protein product 99.5 8.1E-14 2.8E-18 94.7 9.5 72 107-178 7-86 (109)
342 2jwn_A Embryonic polyadenylate 99.5 8.8E-14 3E-18 96.8 9.9 69 107-176 35-107 (124)
343 1x5o_A RNA binding motif, sing 99.5 2.8E-13 9.6E-18 92.8 12.1 71 105-175 22-95 (114)
344 2ki2_A SS-DNA binding protein 99.5 2.1E-14 7.1E-19 94.1 6.0 71 109-180 2-76 (90)
345 2cpy_A RNA-binding protein 12; 99.5 6.1E-14 2.1E-18 96.0 8.4 75 105-180 12-90 (114)
346 2fc8_A NCL protein; structure 99.5 2.7E-13 9.1E-18 90.9 11.2 79 103-188 10-92 (102)
347 2lmi_A GRSF-1, G-rich sequence 99.5 5.5E-14 1.9E-18 95.1 7.7 75 104-179 7-87 (107)
348 1wel_A RNA-binding protein 12; 99.5 1.1E-13 3.7E-18 96.3 9.3 77 104-181 21-101 (124)
349 1wg1_A KIAA1579 protein, homol 99.5 3.9E-14 1.3E-18 92.4 6.5 68 107-177 4-71 (88)
350 1iqt_A AUF1, heterogeneous nuc 99.5 6.6E-14 2.3E-18 88.4 6.7 68 110-178 1-72 (75)
351 3q2s_C Cleavage and polyadenyl 99.5 1.3E-13 4.3E-18 106.0 9.4 75 107-181 67-147 (229)
352 1fj7_A Nucleolin RBD1, protein 99.5 1.7E-13 5.9E-18 91.7 8.9 70 106-177 15-88 (101)
353 3d2w_A TAR DNA-binding protein 99.5 1.8E-13 6.3E-18 89.2 8.1 76 104-186 7-82 (89)
354 3egn_A RNA-binding protein 40; 99.5 2.4E-13 8.2E-18 97.0 9.2 78 106-187 43-129 (143)
355 2bz2_A Negative elongation fac 99.5 3E-13 1E-17 93.3 9.3 70 105-178 36-105 (121)
356 2dha_A FLJ20171 protein; RRM d 99.5 2.2E-13 7.4E-18 94.0 7.9 71 106-177 21-98 (123)
357 1wf0_A TDP-43, TAR DNA-binding 99.4 1.7E-13 5.8E-18 89.3 6.8 73 107-188 4-78 (88)
358 2hgm_A HNRPF protein, heteroge 99.4 4.2E-13 1.5E-17 92.7 8.5 74 104-179 38-116 (126)
359 2lcw_A RNA-binding protein FUS 99.1 1.2E-14 4.2E-19 99.9 0.0 71 106-176 5-87 (116)
360 2xs2_A Deleted in azoospermia- 99.4 7.1E-13 2.4E-17 88.8 8.2 70 106-177 7-79 (102)
361 2dnl_A Cytoplasmic polyadenyla 99.4 4.2E-13 1.4E-17 91.8 6.6 60 106-166 6-72 (114)
362 2j8a_A Histone-lysine N-methyl 99.4 9.9E-13 3.4E-17 89.3 8.1 72 109-180 3-92 (136)
363 1owx_A Lupus LA protein, SS-B, 99.4 1.6E-12 5.5E-17 88.3 8.8 75 4-81 16-94 (121)
364 2pe8_A Splicing factor 45; RRM 99.4 2.4E-12 8.3E-17 86.3 9.5 76 106-181 6-91 (105)
365 2dnr_A Synaptojanin-1; RRM dom 99.4 1.8E-12 6.2E-17 82.4 7.9 76 3-84 4-87 (91)
366 2dit_A HIV TAT specific factor 99.4 8.1E-12 2.8E-16 85.1 11.7 76 105-180 12-98 (112)
367 2voo_A Lupus LA protein; RNA-b 99.4 6.5E-12 2.2E-16 93.9 11.1 72 107-179 108-182 (193)
368 3u1l_A PRE-mRNA-splicing facto 99.3 2.7E-12 9.2E-17 98.3 7.8 65 105-171 131-204 (240)
369 3s6e_A RNA-binding protein 39; 99.3 2.3E-11 7.9E-16 82.5 8.8 75 107-181 6-90 (114)
370 3v4m_A Splicing factor U2AF 65 99.3 1.4E-11 4.7E-16 82.7 7.5 75 107-181 4-94 (105)
371 3tht_A Alkylated DNA repair pr 99.3 9.7E-12 3.3E-16 100.2 7.2 66 105-172 15-82 (345)
372 3ue2_A Poly(U)-binding-splicin 99.2 2.9E-11 9.9E-16 82.6 7.7 75 107-181 19-106 (118)
373 1ufw_A Synaptojanin 2; RNP dom 99.2 1.2E-11 4.1E-16 79.0 4.7 72 3-80 12-92 (95)
374 1jmt_A Splicing factor U2AF 35 99.2 7.2E-12 2.5E-16 83.9 2.5 66 113-178 20-100 (104)
375 1owx_A Lupus LA protein, SS-B, 99.2 1.3E-10 4.5E-15 78.9 8.5 75 103-179 13-91 (121)
376 2d9o_A DNAJ (HSP40) homolog, s 99.1 6E-10 2.1E-14 73.7 9.3 55 117-174 26-80 (100)
377 3dxb_A Thioredoxin N-terminall 99.0 4.9E-10 1.7E-14 85.8 6.3 76 6-81 124-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 3.4E-09 1.2E-13 67.4 7.0 71 107-182 6-84 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 2.7E-08 9.3E-13 64.8 8.6 70 6-78 21-95 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 1.9E-08 6.6E-13 64.2 7.4 67 106-177 13-88 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 1.9E-07 6.4E-12 60.4 10.1 88 5-121 7-99 (104)
382 1wey_A Calcipressin 1; structu 98.6 2.2E-07 7.6E-12 60.4 7.5 75 5-82 4-83 (104)
383 3dxb_A Thioredoxin N-terminall 98.5 1.9E-07 6.6E-12 71.2 7.2 61 121-181 142-210 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.3 4.2E-06 1.4E-10 54.6 8.7 69 108-178 21-94 (117)
385 1uw4_A UPF3X; nonsense mediate 98.3 4.5E-06 1.6E-10 53.4 8.0 76 7-82 2-87 (91)
386 1whv_A Poly(A)-specific ribonu 98.2 7E-06 2.4E-10 52.4 6.5 54 7-66 17-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.1 2E-05 6.7E-10 52.8 7.5 70 6-80 24-94 (119)
388 3ctr_A Poly(A)-specific ribonu 98.0 9E-06 3.1E-10 52.1 4.6 54 7-66 7-60 (101)
389 2l08_A Regulator of nonsense t 97.8 4.5E-05 1.5E-09 49.0 6.1 77 5-81 8-94 (97)
390 1uw4_A UPF3X; nonsense mediate 97.7 0.00031 1.1E-08 44.8 8.6 70 109-178 2-77 (91)
391 1wey_A Calcipressin 1; structu 97.7 0.00015 5.2E-09 47.1 6.7 72 108-181 5-81 (104)
392 1whv_A Poly(A)-specific ribonu 97.6 0.0003 1E-08 44.9 7.3 54 109-167 17-70 (100)
393 3p3d_A Nucleoporin 53; structu 97.5 0.00017 6E-09 48.9 5.7 74 5-80 6-96 (132)
394 3ctr_A Poly(A)-specific ribonu 97.4 0.00034 1.2E-08 44.8 5.8 53 110-167 8-60 (101)
395 1wwh_A Nucleoporin 35, nucleop 97.4 0.00086 2.9E-08 44.8 7.2 65 106-174 22-86 (119)
396 2dhx_A Poly (ADP-ribose) polym 97.2 0.0027 9.3E-08 41.1 7.7 55 107-165 7-66 (104)
397 3pq1_A Poly(A) RNA polymerase; 97.1 0.00033 1.1E-08 58.6 3.8 55 6-63 53-107 (464)
398 2l08_A Regulator of nonsense t 96.9 0.0016 5.6E-08 41.8 4.7 74 108-181 9-88 (97)
399 3p3d_A Nucleoporin 53; structu 96.4 0.005 1.7E-07 41.7 4.6 71 108-180 7-95 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.4 0.013 4.3E-07 49.1 4.0 55 109-165 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 94.9 0.06 2.1E-06 45.9 6.8 54 7-66 441-494 (507)
402 2g0c_A ATP-dependent RNA helic 91.4 0.66 2.3E-05 28.1 5.9 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 89.3 1.7 5.9E-05 37.0 8.5 56 108-168 440-495 (507)
404 4e8u_A Putative uncharacterize 79.2 3.1 0.0001 29.6 4.6 56 8-63 14-81 (172)
405 4eyt_A Telomerase associated p 75.7 12 0.0004 23.2 7.5 56 107-166 11-66 (129)
406 4eyt_A Telomerase associated p 71.0 16 0.00054 22.6 8.1 69 4-79 10-78 (129)
407 3ts2_A Protein LIN-28 homolog 66.6 0.82 2.8E-05 31.9 -0.8 28 21-53 2-29 (148)
408 3lpe_A Putative transcription 65.0 23 0.00077 22.2 6.3 33 33-67 40-72 (92)
409 2e5p_A Protein PHF1, PHD finge 54.3 6.1 0.00021 23.0 1.5 20 31-55 28-47 (68)
410 3j21_T 50S ribosomal protein L 52.8 38 0.0013 20.9 5.6 56 8-63 24-81 (86)
411 2m0o_A PHD finger protein 1; t 49.2 8 0.00027 23.2 1.5 20 31-55 45-64 (79)
412 1nz8_A Transcription antitermi 46.2 36 0.0012 22.3 4.6 24 44-67 61-89 (119)
413 1vq8_S 50S ribosomal protein L 44.7 46 0.0016 20.5 4.5 56 8-63 23-80 (85)
414 2eqj_A Metal-response element- 44.6 11 0.00037 22.0 1.5 12 44-55 40-51 (66)
415 2e5q_A PHD finger protein 19; 44.1 5.1 0.00017 22.9 0.1 12 44-55 34-45 (63)
416 2ns6_A Mobilization protein A; 38.7 45 0.0015 24.0 4.4 46 10-55 74-127 (185)
417 3j21_T 50S ribosomal protein L 38.3 70 0.0024 19.7 6.8 54 113-166 27-83 (86)
418 2od0_A Hypothetical protein VP 37.5 37 0.0012 21.7 3.5 22 18-39 4-25 (105)
419 4hcz_A PHD finger protein 1; p 35.3 19 0.00063 20.3 1.5 20 31-55 22-41 (58)
420 3swz_A Steroid 17-alpha-hydrox 35.0 47 0.0016 27.5 4.8 60 8-74 16-79 (494)
421 3p8b_B Transcription antitermi 33.8 37 0.0013 23.4 3.3 34 33-68 33-66 (152)
422 3fry_A Probable copper-exporti 33.7 68 0.0023 18.2 5.9 54 7-64 7-60 (73)
423 3h7h_B Transcription elongatio 33.3 47 0.0016 21.4 3.4 36 32-69 40-75 (106)
424 3tbg_A Cytochrome P450 2D6; mo 32.9 33 0.0011 28.2 3.5 57 10-73 20-79 (479)
425 3fut_A Dimethyladenosine trans 32.6 34 0.0012 26.3 3.2 48 7-69 111-158 (271)
426 2cs4_A Protein C12ORF2; GTP bi 32.2 32 0.0011 21.7 2.4 22 10-31 20-42 (95)
427 3u5e_X 60S ribosomal protein L 30.8 1.3E+02 0.0044 20.6 6.5 55 111-165 81-138 (142)
428 2zkr_s 60S ribosomal protein L 30.8 82 0.0028 21.9 4.5 55 9-63 95-151 (156)
429 4a17_R RPL23A, 60S ribosomal p 30.0 79 0.0027 21.8 4.3 55 9-63 89-145 (150)
430 1eij_A Hypothetical protein MT 29.3 41 0.0014 20.5 2.4 20 12-31 50-69 (80)
431 4a17_R RPL23A, 60S ribosomal p 29.1 1.4E+02 0.0049 20.6 6.4 55 111-165 89-146 (150)
432 3iz5_X 60S ribosomal protein L 28.7 1.5E+02 0.005 20.6 5.7 55 111-165 91-148 (152)
433 2nn4_A Hypothetical protein YQ 28.5 22 0.00074 21.2 1.1 16 20-35 5-20 (72)
434 3u5e_X 60S ribosomal protein L 28.4 81 0.0028 21.6 4.1 55 9-63 81-137 (142)
435 3uzu_A Ribosomal RNA small sub 28.3 21 0.00071 27.6 1.3 27 7-33 115-141 (279)
436 2f06_A Conserved hypothetical 28.3 1.3E+02 0.0046 20.0 12.7 50 121-171 85-135 (144)
437 2k5n_A Putative cold-shock pro 28.3 22 0.00076 21.2 1.2 11 44-54 13-23 (74)
438 1ytr_A Bacteriocin plantaricin 28.1 36 0.0012 14.9 1.5 12 20-31 14-25 (26)
439 3e6i_A CYPIIE1, P450-J, cytoch 26.9 77 0.0026 26.0 4.7 48 10-63 20-70 (476)
440 3iz5_X 60S ribosomal protein L 26.2 70 0.0024 22.1 3.5 55 9-63 91-147 (152)
441 2kcm_A Cold shock domain famil 26.1 26 0.00088 20.9 1.2 38 44-81 11-53 (74)
442 3ftd_A Dimethyladenosine trans 25.5 50 0.0017 24.9 3.0 25 7-31 96-120 (249)
443 2fh0_A Hypothetical 16.0 kDa p 24.8 48 0.0017 20.2 2.2 20 12-31 48-67 (81)
444 4a4j_A Pacszia, cation-transpo 24.7 95 0.0033 17.1 4.7 54 7-63 4-60 (69)
445 3cam_A Cold-shock domain famil 24.3 29 0.001 20.1 1.2 11 44-54 12-22 (67)
446 1c9o_A CSPB, cold-shock protei 24.0 30 0.001 20.0 1.2 11 44-54 12-22 (66)
447 4bby_A Alkyldihydroxyacetoneph 23.9 41 0.0014 29.6 2.5 54 13-66 350-409 (658)
448 1ik9_C DNA ligase IV; DNA END 23.5 62 0.0021 16.3 2.1 15 16-30 20-34 (37)
449 3a0j_A Cold shock protein; OB- 23.2 32 0.0011 20.4 1.2 11 44-54 12-22 (73)
450 2gu3_A YPMB protein; APC1927, 23.1 85 0.0029 21.2 3.5 44 11-54 68-127 (136)
451 1x8d_A Hypothetical protein YI 23.0 1.1E+02 0.0038 19.5 3.8 33 21-54 27-60 (104)
452 3ulj_A LIN28B, DNA-binding pro 22.2 33 0.0011 21.4 1.2 10 43-52 18-27 (90)
453 1i4w_A Mitochondrial replicati 22.1 60 0.002 26.1 2.9 59 8-72 144-202 (353)
454 1qyr_A KSGA, high level kasuga 22.1 59 0.002 24.6 2.8 23 7-29 91-113 (252)
455 1g6p_A Cold shock protein TMCS 21.8 35 0.0012 19.7 1.2 11 44-54 11-21 (66)
456 1wvf_A 4-cresol dehydrogenase 21.6 41 0.0014 28.6 2.0 41 22-62 217-261 (520)
457 3pm0_A Cypib1, cytochrome P450 21.5 1.7E+02 0.0059 24.0 5.9 57 9-72 18-76 (507)
458 3tqs_A Ribosomal RNA small sub 21.3 26 0.0009 26.6 0.7 26 8-33 98-123 (255)
459 1fme_A FSD-EY peptide; beta-BE 21.1 66 0.0023 14.3 1.7 12 19-30 14-25 (28)
460 2exu_A Transcription initiatio 20.8 76 0.0026 23.2 3.0 35 33-69 139-173 (200)
461 1h95_A CSD, Y-box binding prot 20.2 39 0.0013 20.4 1.2 11 44-54 19-29 (79)
462 2xk0_A Polycomb protein PCL; t 20.0 51 0.0017 19.3 1.5 13 44-56 40-52 (69)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-35 Score=227.17 Aligned_cols=158 Identities=23% Similarity=0.348 Sum_probs=138.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.|+++|||+|||+++|+++|+++|++||+|.+|.|. .++.++|||||+|.+.++|+.|+..||+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 578999999999999999999999999999999994 35778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC--CCEEEEEEcChhH
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDD 158 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~~v~f~~~~~ 158 (260)
...... ......+|||+|||..+++++|.++|..||.|..+.++.+.. .+||||+|.+.++
T Consensus 93 ~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSL-----------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHH-----------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred cccccc-----------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 643211 112335899999999999999999999999999999987754 4699999999999
Q ss_pred HHHHHHHcCCccccccceee
Q 024935 159 MKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 159 a~~a~~~l~~~~~~g~~~~~ 178 (260)
|+.|+..|||..+.|+.+..
T Consensus 156 a~~Ai~~lng~~~~g~~i~V 175 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFV 175 (213)
T ss_dssp HHHHHHHHTTCEETTEECEE
T ss_pred HHHHHHHhCCCEECCEEEEE
Confidence 99999999999999965443
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.6e-34 Score=219.36 Aligned_cols=178 Identities=15% Similarity=0.207 Sum_probs=143.0
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~-~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
-++++|||+||| +.+++++|+++|+.||.|.+|.+..+ .+|||||+|.++++|+.|+..|||..|.|+.|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999654 479999999999999999999999999999999999975
Q ss_pred CCCCCCCC--CCC------CCCCC--CC--------CCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCc--cEEEEEe
Q 024935 83 GRGRSSSD--RHS------SHSSG--RG--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 142 (260)
Q Consensus 83 ~~~~~~~~--~~~------~~~~~--~~--------~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v--~~~~~~~ 142 (260)
....+... ... .+... .. ......+..+|||.|||..+++++|+++|++||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 000 00000 00 00112456789999999999999999999999999 8888887
Q ss_pred CC--CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 143 ~~--~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
+. ..++|||+|.+.++|..|+..|||.++.|......+.++
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 64 237999999999999999999999999997665555443
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=208.75 Aligned_cols=155 Identities=25% Similarity=0.414 Sum_probs=137.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999953 46678999999999999999998899999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHH
Q 024935 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 160 (260)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~ 160 (260)
. ....+..+|+|+|||..+++++|.++|++||.|..+.+..+.. .|+|||+|.+.++|.
T Consensus 81 ~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 81 Q-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp C-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred C-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 2 1223457999999999999999999999999999999998743 359999999999999
Q ss_pred HHHHHcCCccccccceee
Q 024935 161 HAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~ 178 (260)
.|+..|||..+.|+.+..
T Consensus 144 ~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 144 NAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp HHHHHHTTCEETTEECEE
T ss_pred HHHHHhCCCccCCcEEEE
Confidence 999999999999955443
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2e-33 Score=207.59 Aligned_cols=153 Identities=24% Similarity=0.406 Sum_probs=137.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++++|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.++++|..|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999943 57778999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~ 157 (260)
+... .....+|+|+|||..+++++|.++|++||.|..+.+..+.. .+||||+|.+.+
T Consensus 81 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 4321 22346899999999999999999999999999999988753 369999999999
Q ss_pred HHHHHHHHcCCccccccce
Q 024935 158 DMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~ 176 (260)
+|..|+..|||..+.|+.+
T Consensus 142 ~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSS
T ss_pred HHHHHHHHhcCCccCCCcc
Confidence 9999999999999999653
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.1e-33 Score=207.68 Aligned_cols=150 Identities=27% Similarity=0.431 Sum_probs=136.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++++|||+|||+++++++|+++|+.||+|..|.+. .++.++|||||+|.++++|..|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 67999999999999999999999999999999994 357788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~ 157 (260)
+... .....+|+|.|||..+++++|.++|++||.|..+.+..+.. .++|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 5332 22457899999999999999999999999999999988763 259999999999
Q ss_pred HHHHHHHHcCCccccc
Q 024935 158 DMKHAIKKLDDSEFRN 173 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g 173 (260)
+|..|+..|||..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999987
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-33 Score=211.81 Aligned_cols=160 Identities=14% Similarity=0.284 Sum_probs=134.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999953 56789999999999999999999 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcCh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~ 156 (260)
........ ........+|||+|||..+++++|.++|+.||.|..+.+..+.. .|||||+|.+.
T Consensus 90 ~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 90 VSREDSQR-------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCcccccc-------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 75432211 01223457999999999999999999999999999999998753 36999999999
Q ss_pred hHHHHHHHHcCCccccccceee
Q 024935 157 DDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
++|..|+.. ++..+.|+.+..
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEE
T ss_pred HHHHHHHHh-CCcEECCEEEEE
Confidence 999999986 799999954433
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.6e-32 Score=219.53 Aligned_cols=174 Identities=20% Similarity=0.284 Sum_probs=142.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
..++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999976 899999999999998888999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC--CC-------------------------------------CCC-------------------------
Q 024935 79 LAHGGRGRSSS--DR-------------------------------------HSS------------------------- 94 (260)
Q Consensus 79 ~~~~~~~~~~~--~~-------------------------------------~~~------------------------- 94 (260)
|+......... .. ...
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98754321000 00 000
Q ss_pred ----C-CCCC-----------------------CCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC
Q 024935 95 ----H-SSGR-----------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (260)
Q Consensus 95 ----~-~~~~-----------------------~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 146 (260)
. ..+. .......+..+|||+|||..+++++|+++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 0 0000 000122356789999999999999999999999999999998655 4
Q ss_pred CEEEEEEcChhHHHHHHHHcCCcccc-cccee
Q 024935 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSR 177 (260)
Q Consensus 147 ~~~~v~f~~~~~a~~a~~~l~~~~~~-g~~~~ 177 (260)
+||||+|.+.++|..|+..|||..+. |+.+.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 69999999999999999999999999 75443
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.8e-32 Score=212.48 Aligned_cols=172 Identities=17% Similarity=0.253 Sum_probs=140.2
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 7899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC------CCC----------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCC
Q 024935 82 GGRGRSSSDRHSS------HSS----------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (260)
Q Consensus 82 ~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 144 (260)
......+...... +.. .........+..+|||.|||..+++++|+++|.+|| .|..+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 6532211110000 000 000011234578999999999999999999999999 9999998653
Q ss_pred CCCEEEEEEcChhHHHHHHHHcCCcccc-cccee
Q 024935 145 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSR 177 (260)
Q Consensus 145 ~~~~~~v~f~~~~~a~~a~~~l~~~~~~-g~~~~ 177 (260)
..++|||+|.+.++|..|+..|||..+. |+.+.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 221 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence 3579999999999999999999999998 85443
No 9
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=3.4e-32 Score=206.59 Aligned_cols=170 Identities=17% Similarity=0.254 Sum_probs=139.4
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCC
Q 024935 6 SRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (260)
Q Consensus 6 ~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (260)
+++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 58999999999 99999999999999999999997654 7899999999999999999999999999999999998653
Q ss_pred CCCCCCCCCC------C----------CCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCCCCC
Q 024935 85 GRSSSDRHSS------H----------SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT 147 (260)
Q Consensus 85 ~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~ 147 (260)
...+...... + ...........+..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 2221110000 0 00001111234578999999999999999999999999 99999986643 67
Q ss_pred EEEEEEcChhHHHHHHHHcCCcccc-ccceee
Q 024935 148 TGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRA 178 (260)
Q Consensus 148 ~~~v~f~~~~~a~~a~~~l~~~~~~-g~~~~~ 178 (260)
+|||+|.+.++|..|+..|||..+. |+.+..
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 9999999999999999999999998 765443
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.1e-31 Score=203.84 Aligned_cols=176 Identities=22% Similarity=0.368 Sum_probs=139.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-----------CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYG-----------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-----------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
..+++|||+|||+++|+++|+++|+.|| .|..+.+ +.++|||||+|.+.++|++|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 4689999999999999999999999994 4555555 356899999999999999999 699999999
Q ss_pred cEEEEEEccCCCCCCCCCCCCC-CCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CC
Q 024935 73 HRLRVELAHGGRGRSSSDRHSS-HSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GT 147 (260)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~ 147 (260)
+.|.|.++.............. ...+...........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 9999999876543322111111 111111222345678999999999999999999999999999999998753 35
Q ss_pred EEEEEEcChhHHHHHHHHcCCccccccceeeEEeeecccC
Q 024935 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (260)
Q Consensus 148 ~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (260)
||||+|.+.++|..|+..|||..+.|+ .+.+....+
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~ 193 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDK----KLLVQRASV 193 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTE----ECEEEESCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCE----EEEEEECCC
Confidence 999999999999999999999999995 445544433
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.1e-32 Score=203.63 Aligned_cols=151 Identities=17% Similarity=0.324 Sum_probs=132.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC---C--CCCceEEEEecChHHHHHHHHhCCCCccC---CcEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---P--RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~---~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~ 76 (260)
++++|||+|||+++|+++|+++|++||+|.+|.+..+ + .++|||||+|.+.++|+.|+..|||..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999432 2 67899999999999999999999998876 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEE
Q 024935 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDY 153 (260)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f 153 (260)
+.++..... ......+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|
T Consensus 82 ~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ecccccccc------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 888764332 223457899999999999999999999999999999998854 35999999
Q ss_pred cChhHHHHHHHHcCCccccc
Q 024935 154 TNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 154 ~~~~~a~~a~~~l~~~~~~g 173 (260)
.+.++|..|+..|||..+.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 99999999999999987764
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.6e-32 Score=209.22 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=137.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999999999999999999999999954 56789999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChh
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~ 157 (260)
......+... ..........+|||.|||..+++++|.++|++||.|..+.+..+.. .+||||+|.+.+
T Consensus 107 ~~~~~~~~~~--------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPIID--------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHHH--------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhhh--------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 4321100000 0000113457999999999999999999999999999999998753 469999999999
Q ss_pred HHHHHHHHcCCccccccceee
Q 024935 158 DMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+|..|+..||+..+.|+.+..
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEE
T ss_pred HHHHHHHHccCCEeCCcEEEE
Confidence 999999999999999965443
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6.3e-32 Score=200.55 Aligned_cols=152 Identities=22% Similarity=0.428 Sum_probs=133.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc----C-------CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
+++++|||+|||+++|+++|+++|+.| | .|..+.+. .++|||||+|.++++|.+|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 66666664 45899999999999999999 799999999
Q ss_pred cEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCE
Q 024935 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTT 148 (260)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~ 148 (260)
+.|.|.++...... ....+|+|+|||..+++++|.++|++||.|..+.+..+.. .||
T Consensus 78 ~~i~v~~~~~~~~~-------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 78 QSLKIRRPHDYQPL-------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECEEECCSSCCCC-------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ceeeecCCcccCCC-------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999987543221 2257899999999999999999999999999999998853 359
Q ss_pred EEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 149 GIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 149 ~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
|||+|.+.++|..|+..|||..+.|+.+..
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 168 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEE
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEE
Confidence 999999999999999999999999965443
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.1e-33 Score=207.56 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=136.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ |||..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999998776333 3457789999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHH
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~ 160 (260)
..... .......+|||+|||..+++++|+++|++||.|..+ .......+||||+|.+.++|.
T Consensus 89 ~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 89 KGRDS-----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCSSC-----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHH
T ss_pred CCccc-----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHH
Confidence 75432 223356899999999999999999999999988777 333355689999999999999
Q ss_pred HHHHHcCCccccccceeeEEeeecc
Q 024935 161 HAIKKLDDSEFRNAFSRAYVRVREY 185 (260)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (260)
.|+..|||..+.|+ .+.+...
T Consensus 151 ~A~~~l~g~~~~g~----~i~v~~a 171 (175)
T 1fje_B 151 KNLEEKQGAEIDGR----SVSLYYT 171 (175)
T ss_dssp HHHHHHTEEEETTE----EEEEEEC
T ss_pred HHHHHhCCCEECCe----EEEEEec
Confidence 99999999999995 4555443
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.8e-32 Score=201.47 Aligned_cols=152 Identities=18% Similarity=0.364 Sum_probs=133.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|..|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4789999999999999999999999999999999953 578899999999999999999994 57899999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcCh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~ 156 (260)
.... ......+|||+|||..+++++|.++|++||.|..+.+..+. ..|||||+|.+.
T Consensus 79 ~~~~-------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 79 IPRD-------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CCHH-------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred cchh-------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 5322 11234689999999999999999999999999999998764 346999999999
Q ss_pred hHHHHHHHHcCCcccccccee
Q 024935 157 DDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~ 177 (260)
++|..|++ +++..+.|+.+.
T Consensus 140 ~~a~~A~~-~~~~~~~g~~i~ 159 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDRKIE 159 (167)
T ss_dssp HHHHHHHH-CSEECSSSSCEE
T ss_pred HHHHHHHh-CCCEEeCCeEEE
Confidence 99999998 899999996543
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.4e-30 Score=205.78 Aligned_cols=141 Identities=27% Similarity=0.405 Sum_probs=128.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+++|+++|+++|+.||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 356799999999999999999999999999999996 3589999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHH
Q 024935 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMK 160 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~ 160 (260)
..+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|.
T Consensus 96 ------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 96 ------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp ------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred ------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 35899999999999999999999999999999988743 369999999999999
Q ss_pred HHHHHcCCcccc
Q 024935 161 HAIKKLDDSEFR 172 (260)
Q Consensus 161 ~a~~~l~~~~~~ 172 (260)
.|+..||+..+.
T Consensus 152 ~A~~~l~~~~~~ 163 (261)
T 3sde_A 152 KALERCGDGAFL 163 (261)
T ss_dssp HHHHHHHHSCEE
T ss_pred HHHHHhcCCeEE
Confidence 999999654443
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.8e-30 Score=207.90 Aligned_cols=158 Identities=19% Similarity=0.259 Sum_probs=139.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+++++|.++|+.||.|..+.+. .++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999999999999999984 35778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC-CHHHHHHHHHhcCCccEEEEEeCCCC---CEEEEEEcCh
Q 024935 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNY 156 (260)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~v~f~~~ 156 (260)
...... .......+|||.|||..+ ++++|.++|+.||.|..+.+..+..+ ++|||+|.+.
T Consensus 173 ~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred CCCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 754321 122355789999999995 99999999999999999999887543 6999999999
Q ss_pred hHHHHHHHHcCCcccccccee
Q 024935 157 DDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~ 177 (260)
++|..|+..|||..+.|+.+.
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECE
T ss_pred HHHHHHHHHhCCCccCCeEEE
Confidence 999999999999999995443
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.5e-30 Score=209.18 Aligned_cols=159 Identities=14% Similarity=0.237 Sum_probs=134.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC-CccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++++|||+|||+.+++++|.++|+.|| +|..|.+.. .+.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999954 35679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCccEEEEEeCCC-----CCEEEEEEcC
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTN 155 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~~~v~f~~ 155 (260)
+....... ........+|||.|||.. +++++|.++|..||.|..+.++.+.. .+||||+|.+
T Consensus 196 ~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 196 PLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 54432211 122345689999999999 99999999999999999999987654 5799999999
Q ss_pred hhHHHHHHHHcCCccccccce
Q 024935 156 YDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g~~~ 176 (260)
.++|..|+ .|||..+.|+.+
T Consensus 264 ~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp HHHHHHHG-GGTTEEETTEEE
T ss_pred HHHHHHHH-HhcCCEECCcEE
Confidence 99999999 999999999543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.2e-30 Score=204.72 Aligned_cols=146 Identities=23% Similarity=0.317 Sum_probs=132.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 3679999999999999999999999999 999988 4678999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHH
Q 024935 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDM 159 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a 159 (260)
...+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 235899999999999999999999999999999987754 35999999999999
Q ss_pred HHHHHHcCCccccccceee
Q 024935 160 KHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~~ 178 (260)
..|+..|++..+.|+.+..
T Consensus 151 ~~A~~~l~~~~~~g~~i~v 169 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYV 169 (284)
T ss_dssp HHHHHHHTTCEETTEECEE
T ss_pred HHHHHHhCCCEeCCcEEEE
Confidence 9999999999999954443
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.7e-30 Score=206.85 Aligned_cols=147 Identities=21% Similarity=0.266 Sum_probs=129.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
+++++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|..|+. |||..+.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 57899999999999999999999999999999999543 3358999999999999999996 99999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCC---CCCEEEEEEcChhH
Q 024935 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDD 158 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~---~~~~~~v~f~~~~~ 158 (260)
..+|||+|||..+++++|.++|..|| .|..+.++.+. ..+||||+|.+.++
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 36899999999999999999999999 99999998765 56799999999999
Q ss_pred HHHHHHHcCCcccccccee
Q 024935 159 MKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 159 a~~a~~~l~~~~~~g~~~~ 177 (260)
|..|+..||+..+.|+.+.
T Consensus 172 a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp HHHHHHHHTTCEETTEECE
T ss_pred HHHHHHHhCCCEeCCcEEE
Confidence 9999999999999995443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=1.4e-25 Score=154.78 Aligned_cols=109 Identities=21% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.+++|||+|||+++|+++|+++|+.||.|.+|.|.. .+.++|||||+|.+.++|+.||..|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467899999999999999999999999999999954 3456899999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHH
Q 024935 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124 (260)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~ 124 (260)
...... .........+|||+|||+.+|++.
T Consensus 84 ~~~~~~-----------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE-----------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC---------------------------------------
T ss_pred cccccc-----------cccccCCCCceEeCCCCCCccccc
Confidence 322111 111223446799999999988763
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=3.8e-23 Score=173.31 Aligned_cols=81 Identities=36% Similarity=0.644 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999999953 6788999999999999999999999999999999999999
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8644
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.2e-23 Score=176.42 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=102.1
Q ss_pred CCCCCCCHHHHHHHHhhcCCccEEEe----cC-CCCCCceE-----EEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 13 NLPGDIREREVEDLFYKYGPIAHIDL----KI-PPRPPGYA-----FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~v~~~~~----~~-~~~~~g~a-----fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.||++ |.+||.++|+|..|.. .. .....+|+ |++|.....+..++..++.....+..........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45654 7899999999988733 11 11223344 7888776666555544433322211000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhH
Q 024935 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 158 (260)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~ 158 (260)
.... ..................+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ..+||||+|.+.++
T Consensus 79 ~~~~--~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 79 QQEV--ETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred HHHH--HHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 0000 00000000000011223456799999999999999999999999999999998764 35799999999999
Q ss_pred HHHHHHHcCCccccccceeeEEee
Q 024935 159 MKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 159 a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
|+.||..|||..|.|..+.+.+..
T Consensus 157 A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 157 MHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred HHHHHHHcCCCEECCEEEEEEEeC
Confidence 999999999999999766555543
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=138.66 Aligned_cols=78 Identities=28% Similarity=0.511 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++|||+|||+++|+++|+++|++||+|..|.+. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999994 357889999999999999999999999999999999999986
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.89 E-value=2.1e-23 Score=144.04 Aligned_cols=106 Identities=29% Similarity=0.454 Sum_probs=94.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
...++++|||+|||+.+++++|+++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHhcCC
Q 024935 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD 134 (260)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~ 134 (260)
..... .+++...++++|.++|++||-
T Consensus 84 ~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 43211 355667789999999999984
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=133.66 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=71.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CccEEEecC---CCCCCceEEEEecChHHHHHHHHhC-CCCccCCcEEEEEEc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELA 80 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~ 80 (260)
|++|||+|||+++|+++|+++|++|| +|.+|.|.. ++.++|||||+|.+.++|++|++.| ++..+.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 899999953 5788999999999999999999877 457899999999999
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7644
No 27
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=135.34 Aligned_cols=100 Identities=43% Similarity=0.640 Sum_probs=83.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (260)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..+.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999765 7899999999999999999999999999999999999875532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceEEecCCC
Q 024935 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLP 117 (260)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~ 117 (260)
....... ........|||+||+
T Consensus 79 ~~~~~~~---------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPP---------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCC---------CSCCCCSCCCSCCCC
T ss_pred ccCCCCC---------ccccCCCceecCCCC
Confidence 2111111 122335679999986
No 28
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.88 E-value=3.2e-22 Score=127.24 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
-.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|+.|++.||+..+.|+.|.|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999963 6999999999999999999999999999999999887
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.5e-22 Score=133.28 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC--CCccCCcEEEEEE
Q 024935 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (260)
+..++++|||+|||+.+|+++|+++|++||+|.+|.|..+ +|||||+|.+.++|+.|+..|+ +..|.|++|.|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3568899999999999999999999999999999999753 8999999999999999999876 4789999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976554
No 30
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=133.75 Aligned_cols=83 Identities=60% Similarity=1.066 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..++++|||+|||+++|+++|+++|+.||.|..|.|..++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999986
Q ss_pred CCC
Q 024935 83 GRG 85 (260)
Q Consensus 83 ~~~ 85 (260)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=135.53 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.|.++|||+|||+++++++|+++|++||+|.+|.|. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 578999999999999999999999999999999994 35788999999999999999999999999999999999998
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=4.7e-21 Score=132.06 Aligned_cols=84 Identities=27% Similarity=0.509 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
...++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 457889999999999999999999999999999999954 678899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986554
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=131.52 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC--ccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCC----ccCCcE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGHR 74 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~ 74 (260)
..-+||||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|++|+..|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 56689999999999999999999999994 77898843 5789999999999999999999999997 489999
Q ss_pred EEEEEccC
Q 024935 75 LRVELAHG 82 (260)
Q Consensus 75 i~v~~~~~ 82 (260)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=129.69 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCc--cCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~ 80 (260)
..|+++|||+|||..+|+++|.++|++||.|.++.+.. .+|||||+|.+.++|.+|+..|++.. +.|++|.|+|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 36899999999999999999999999999999999963 58999999999999999999999876 78999999999
Q ss_pred cCC
Q 024935 81 HGG 83 (260)
Q Consensus 81 ~~~ 83 (260)
+..
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 754
No 35
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=135.27 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
..|+++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999876 699999999999998888899999999999999999999999999999999999
Q ss_pred EccCC
Q 024935 79 LAHGG 83 (260)
Q Consensus 79 ~~~~~ 83 (260)
|+...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99754
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=128.43 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999954 577899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987554
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=2.6e-21 Score=139.79 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=105.8
Q ss_pred CCCCceEEEEecChHHHHHHHHhC-CCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC
Q 024935 42 PRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA 120 (260)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~ 120 (260)
...+|+++|+|.+.++|++|+..| ||..++| .|.+.++........... ...............+|||+|||..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCCC
Confidence 356899999999999999999999 9999999 999998764221110000 00011112344567899999999999
Q ss_pred CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
++++|.++|.+||.|..+.+..+ ..+||||+|.+.++|..|+..|||..+.|+.+..
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 99999999999999999999877 5789999999999999999999999999965544
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=129.03 Aligned_cols=83 Identities=34% Similarity=0.506 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..+.++|||+|||+.+++++|+++|+.||.|..|.|..+ ..++|||||+|.+.++|+.|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999653 4468999999999999999999999999999999999998
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7543
No 39
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.6e-21 Score=127.87 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEE-Eec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~-~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.++++|||+|||+++++++|+++|+.||.|..+ .|. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 478999999999999999999999999999999 884 3577899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976543
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.8e-21 Score=126.78 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4789999999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=2.5e-21 Score=129.05 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
|+++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 689999999999999999999999999999999954 47789999999999999999999999999999999999997
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-21 Score=130.01 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC------CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (260)
+.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35889999999999999999999999999999999953 336789999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 024935 77 VELAHGGRG 85 (260)
Q Consensus 77 v~~~~~~~~ 85 (260)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999986554
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.8e-21 Score=129.72 Aligned_cols=82 Identities=34% Similarity=0.583 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5789999999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86554
No 44
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-21 Score=130.40 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC--ccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~ 79 (260)
..|+++|||+|||+ .+|+++|+++|++||.|.+|.|.. .+|||||+|.+.++|..|+..||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 36899999999999 999999999999999999999974 3689999999999999999998864 59999999999
Q ss_pred ccCCC
Q 024935 80 AHGGR 84 (260)
Q Consensus 80 ~~~~~ 84 (260)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98544
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=128.64 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86554
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=132.04 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC--CCccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~ 80 (260)
..|+++|||+|||+.+|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|+..|+ +..|.|++|.|.|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468899999999999999999999999999999999743 7999999999999999999887 46899999999999
Q ss_pred cCCCCC
Q 024935 81 HGGRGR 86 (260)
Q Consensus 81 ~~~~~~ 86 (260)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 865543
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=129.99 Aligned_cols=82 Identities=37% Similarity=0.579 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 5679999999999999999999999999999999954 4778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86544
No 48
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=127.80 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.+.++|||+|||+.+++++|+ ++|++||+|..|.|..+...+|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 357899999999999999999 9999999999999976544489999999999999999999999999999999999
Q ss_pred ccCCC
Q 024935 80 AHGGR 84 (260)
Q Consensus 80 ~~~~~ 84 (260)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97544
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=2.9e-21 Score=125.89 Aligned_cols=79 Identities=34% Similarity=0.608 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+.+++++|+++|++||+|..|.+. .++.++|||||+|.+.++|..|+..|||..+.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3588999999999999999999999999999999994 4567899999999999999999999999999999999999
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 50
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=127.17 Aligned_cols=82 Identities=24% Similarity=0.531 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999954 47789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986554
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=129.44 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCCcc-EEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcE---
Q 024935 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--- 74 (260)
+..++++|||+|||+++++++|+++|++||+|. .|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457899999999999999999999999999999 999943 5678899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 024935 75 -LRVELAHGGR 84 (260)
Q Consensus 75 -i~v~~~~~~~ 84 (260)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997654
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=127.57 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhC--CCCccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~ 80 (260)
..|+++|||+|||+.+++++|+++|++||.|..|.|..+ +|||||+|.+.++|..|+..| ++..+.|++|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 368899999999999999999999999999999998743 899999999999999999976 467899999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86554
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9e-21 Score=128.57 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 76543
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=129.62 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..+.++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35789999999999999999999999999999999944 56778999999999999999999999999999999999998
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6554
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=3.8e-21 Score=127.23 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999954 56788999999999999999999999999999999999997
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 56
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.9e-20 Score=136.50 Aligned_cols=135 Identities=16% Similarity=0.088 Sum_probs=97.5
Q ss_pred CCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCH
Q 024935 43 RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASW 122 (260)
Q Consensus 43 ~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~ 122 (260)
.++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||+|||+.+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 84 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSLKVDNLTYRTSP 84 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEEEEESCCTTCCH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEEEEeCCCCCCCH
Confidence 5789999999999999999988776443333333322111000000 0000011123345689999999999999
Q ss_pred HHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeecccC
Q 024935 123 QDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (260)
Q Consensus 123 ~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (260)
++|+++|++||.|..+.+..+. ..|||||+|.+.++|+.|+..|||..+.|+ .|.+....+
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~ 149 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----ELRVQMARY 149 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS----EEEEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEECCC
Confidence 9999999999999999998764 456999999999999999999999999995 445554443
No 57
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=1.1e-21 Score=131.12 Aligned_cols=84 Identities=29% Similarity=0.538 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEE
Q 024935 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (260)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (260)
|...++++|||+|||+++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999976677789999999999999999999999999999999
Q ss_pred EEEccCCC
Q 024935 77 VELAHGGR 84 (260)
Q Consensus 77 v~~~~~~~ 84 (260)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997643
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=126.11 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999943 5778899999999999999999999999999999999998
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=4.7e-21 Score=124.28 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
+.+|||+|||+++++++|+++|+.||+|..+.+. .++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999994 3577899999999999999999999999999999999999875
Q ss_pred C
Q 024935 83 G 83 (260)
Q Consensus 83 ~ 83 (260)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=127.00 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++++|||+|||+.+++++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|+.|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 357899999999999999999999999999999999543 4478999999999999999999999999999999999998
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6554
No 61
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.9e-20 Score=129.10 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5788999999999999999999999999999999943 5777899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024935 81 HGGRGR 86 (260)
Q Consensus 81 ~~~~~~ 86 (260)
......
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876544
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=127.97 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC----CCCCCceEEEEecChHHHHHHHHhC-CCCccCCcEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRV 77 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v 77 (260)
..++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 35789999999999999999999999999999999943 5678999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 024935 78 ELAHGGRG 85 (260)
Q Consensus 78 ~~~~~~~~ 85 (260)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-21 Score=129.62 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5689999999999999999999999999999999943 5678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.3e-21 Score=126.11 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5678999999999999999999999999999999954 3678999999999999999999999999999999999997
Q ss_pred c
Q 024935 81 H 81 (260)
Q Consensus 81 ~ 81 (260)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=7.7e-21 Score=131.06 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999943 5677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86554
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.2e-21 Score=127.59 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999943 56778999999999999999999999999999999999997
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 67
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=127.08 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC--CccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~ 81 (260)
.|+++|||+|||+.+++++|+++|++||.|..|.|.. .+|||||+|.+.++|.+|+..|++ ..|.|++|.|.|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5789999999999999999999999999999999864 389999999999999999998875 45999999999998
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6543
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.9e-20 Score=127.18 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCcc---CCcEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~i~ 76 (260)
..++++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999955 477899999999999999999999999988 899999
Q ss_pred EEEccCCCC
Q 024935 77 VELAHGGRG 85 (260)
Q Consensus 77 v~~~~~~~~ 85 (260)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999986543
No 69
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=127.02 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC-----cEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~i~v~ 78 (260)
.+.++|||+|||+++++++|+++|++||+|..|.|..+ |||||+|.+.++|++||..||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46789999999999999999999999999999999754 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 024935 79 LAHGGRG 85 (260)
Q Consensus 79 ~~~~~~~ 85 (260)
++.....
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987543
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=124.70 Aligned_cols=80 Identities=29% Similarity=0.591 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC---CC-CCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PR-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~---~~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..+++|||+|||+++++++|+++|+.||.|..+.+..+ +. ++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 46789999999999999999999999999999999543 23 789999999999999999999999999999999999
Q ss_pred ccCC
Q 024935 80 AHGG 83 (260)
Q Consensus 80 ~~~~ 83 (260)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9654
No 71
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=123.43 Aligned_cols=78 Identities=38% Similarity=0.649 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..++++|||+|||+++++++|+++|+.||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999997 56999999999999999999999999999999999976
Q ss_pred CCC
Q 024935 83 GRG 85 (260)
Q Consensus 83 ~~~ 85 (260)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=2.5e-20 Score=125.85 Aligned_cols=79 Identities=24% Similarity=0.496 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999997 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 024935 84 RGRS 87 (260)
Q Consensus 84 ~~~~ 87 (260)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 73
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=1e-20 Score=128.40 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
...++|||+|||+++++++|+++|+.|| +|..+.+.. ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999999853 35789999999999999999999999999999999999865
Q ss_pred C
Q 024935 83 G 83 (260)
Q Consensus 83 ~ 83 (260)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=123.27 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..++++|||+|||+++++++|+++|++||+|..|.+. +|||||+|.+.++|+.|+..||+..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 78999999999999999999999999999999999986
Q ss_pred CCC
Q 024935 83 GRG 85 (260)
Q Consensus 83 ~~~ 85 (260)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-21 Score=129.64 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC--CCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (260)
..|+++|||+|||++ +++++|+++|++||+|..|.|. .++|||||+|.+.++|..|+..|| +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 9999999999999999999996 358999999999999999999886 4669999999999
Q ss_pred ccCCC
Q 024935 80 AHGGR 84 (260)
Q Consensus 80 ~~~~~ 84 (260)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 97544
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7e-21 Score=129.34 Aligned_cols=80 Identities=28% Similarity=0.517 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4678899999999999999999999999999999953 4777999999999999999999999999999999999998
Q ss_pred cCC
Q 024935 81 HGG 83 (260)
Q Consensus 81 ~~~ 83 (260)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.5e-20 Score=127.55 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCC---cEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~i~v~ 78 (260)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999943 56778999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 024935 79 LAHGGRG 85 (260)
Q Consensus 79 ~~~~~~~ 85 (260)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986553
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=128.05 Aligned_cols=82 Identities=22% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCC------CCccCCcE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~------~~~~~g~~ 74 (260)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5688999999999999999999999999999999954 46789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 024935 75 LRVELAHGGRG 85 (260)
Q Consensus 75 i~v~~~~~~~~ 85 (260)
|.|.++.....
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.5e-21 Score=128.48 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+|||+|||+++|+++|+++|+.|| .|.++.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999943 67889999999999999999999999999999999999987
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=126.53 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC----CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
..+.++|||+|||+++++++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35789999999999999999999999999 999999543 677999999999999999999 799999999999999
Q ss_pred EccCCCC
Q 024935 79 LAHGGRG 85 (260)
Q Consensus 79 ~~~~~~~ 85 (260)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 81
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.7e-20 Score=126.53 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++||..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 36789999999999999999999999999999999954 477899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=126.33 Aligned_cols=80 Identities=28% Similarity=0.497 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
..++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35789999999999999999999999999999999943 4667899999999999999999999999999999999998
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 83
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=122.88 Aligned_cols=78 Identities=32% Similarity=0.567 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..++++|||+|||+++|+++|+++|+.||.|..|.+. ++||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3678999999999999999999999999999999997 56999999999999999999999999999999999986
Q ss_pred CCC
Q 024935 83 GRG 85 (260)
Q Consensus 83 ~~~ 85 (260)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=126.70 Aligned_cols=78 Identities=17% Similarity=0.360 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+.++|||+|||+++|+++|+++|++||+|.+|.|.. .+.++|||||+|.+.++|..|+. +++..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 4678999999999999999999999999999999954 37789999999999999999999 99999999999999876
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=124.75 Aligned_cols=78 Identities=26% Similarity=0.476 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC--CcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~ 81 (260)
.++++|||+|||+++++++|+++|++||+|..|.+... +|||||+|.+.++|++|+..||+..|. |+.|.|.|+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999999743 789999999999999999999999999 9999999997
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=127.19 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
..++++|||+|||+++++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999943 5667899999999999999999999999999999999998
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 87
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-21 Score=126.36 Aligned_cols=79 Identities=35% Similarity=0.574 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 5788999999999999999999999999999999953 4677899999999999999999999999999999999998
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=4.9e-21 Score=128.47 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=72.7
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCC-cE
Q 024935 5 ASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HR 74 (260)
Q Consensus 5 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~ 74 (260)
.+++|||+|||. ++++++|+++|++||.|..|.|. .++.++|||||+|.+.++|++|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 99999999999999999999994 357889999999999999999999999999999 99
Q ss_pred EEEEEccC
Q 024935 75 LRVELAHG 82 (260)
Q Consensus 75 i~v~~~~~ 82 (260)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999863
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=1.6e-20 Score=128.49 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999953 5778999999999999999999999999999999999998
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7543
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=9.5e-21 Score=132.83 Aligned_cols=82 Identities=35% Similarity=0.595 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999954 467899999999999999999999999999999999999
Q ss_pred ccCCC
Q 024935 80 AHGGR 84 (260)
Q Consensus 80 ~~~~~ 84 (260)
+....
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87543
No 91
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=125.87 Aligned_cols=79 Identities=29% Similarity=0.443 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccE--------EEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
..+.++|||+|||+++++++|+++|+.||.|.. +.+. .++.++|||||+|.+.++|+.|+..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357899999999999999999999999999999 8884 35778999999999999999999999999999
Q ss_pred CcEEEEEEcc
Q 024935 72 GHRLRVELAH 81 (260)
Q Consensus 72 g~~i~v~~~~ 81 (260)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999873
No 92
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=126.15 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc-----CCcE
Q 024935 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (260)
Q Consensus 2 ~~~~~~~l~v--~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-----~g~~ 74 (260)
+..|+++||| +||++++++++|+++|++||+|..|.|.. .+|||||+|.+.++|++|+..|||..| .|.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 77999999999999999999999998863 479999999999999999999999988 6889
Q ss_pred EEEEEccCCC
Q 024935 75 LRVELAHGGR 84 (260)
Q Consensus 75 i~v~~~~~~~ 84 (260)
|.|.|+....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 93
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=127.29 Aligned_cols=82 Identities=28% Similarity=0.470 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCcc--------EEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~--------~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
.++++|||+|||+.+++++|+++|+.||.|. .|.|. .++.++|||||+|.+.++|++||..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999999 68884 357789999999999999999999999999999
Q ss_pred cEEEEEEccCCCC
Q 024935 73 HRLRVELAHGGRG 85 (260)
Q Consensus 73 ~~i~v~~~~~~~~ 85 (260)
+.|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999986543
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1.7e-20 Score=127.71 Aligned_cols=78 Identities=26% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec--CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++++|||+|||+.+++++|+++|+.||.|..|.|. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 468999999999999999999999999999999994 367778999999999999999999999999999999999975
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=125.77 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHHhhcCCccEEEec-CCCCCCceEEEEecChHHHHHHHHhCCCCccCCc-EE
Q 024935 4 RASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RL 75 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~------t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i 75 (260)
..+++|||+|||+.+ |+++|+++|++||.|..|.|. .++.++|||||+|.+.++|..|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 789999999999999999995 4678899999999999999999999999999999 99
Q ss_pred EEEEccCC
Q 024935 76 RVELAHGG 83 (260)
Q Consensus 76 ~v~~~~~~ 83 (260)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998643
No 96
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.2e-20 Score=130.96 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+|+++|+++|+.||.|..|.|. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 467899999999999999999999999999999994 35778999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024935 81 HGGRGR 86 (260)
Q Consensus 81 ~~~~~~ 86 (260)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 865543
No 97
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=123.97 Aligned_cols=78 Identities=35% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.+.. .+|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5678999999999999999999999999999999973 4799999999999999999999999999999999999764
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 98
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=127.88 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCc----cEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v----~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.++++|||+|||+++|+++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999999 455554 788899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986554
No 99
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=3.2e-20 Score=121.96 Aligned_cols=78 Identities=23% Similarity=0.494 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||+++++++|+++|+.||.|..+.+. .++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 46899999999999999999999999999999994 36788999999999999999999 799999999999999987
Q ss_pred CC
Q 024935 82 GG 83 (260)
Q Consensus 82 ~~ 83 (260)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 100
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=3.3e-20 Score=125.30 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..+.++|||+|||+.+++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|++|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 99999953 4678999999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=125.86 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhh-cCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCc-cCCcEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~ 78 (260)
..++++|||+|||+++|+++|+++|+. ||.|..|.|.. ++.++|||||+|.+.++|..|+..||+.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 457899999999999999999999999 99999999943 67789999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 024935 79 LAHGGRG 85 (260)
Q Consensus 79 ~~~~~~~ 85 (260)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9975443
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=121.77 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhcCCccEEEec-CCCCCCceEEEEecChHHHHHHHHhCCCCccCCc-EEEE
Q 024935 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (260)
Q Consensus 6 ~~~l~v~nl~~~~------t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 77 (260)
+++|||+|||+.+ ++++|+++|++||+|..|.+. .++.++|||||+|.+.++|+.|+..|||..|.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999995 4678899999999999999999999999999999 8876
No 103
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.8e-20 Score=129.78 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999953 477899999999999999999999999999999999998
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=127.00 Aligned_cols=79 Identities=25% Similarity=0.506 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.++++|||+|||.++++++|+++|+.||+|..|.+.. .+.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999954 345799999999999999999999999999999999999865
No 105
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=127.59 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+.+++++|+++|+.||+|..|.+. .++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3578899999999999999999999999999999994 3567789999999999999999999999999999999999
Q ss_pred ccC
Q 024935 80 AHG 82 (260)
Q Consensus 80 ~~~ 82 (260)
+..
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 864
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=125.75 Aligned_cols=79 Identities=23% Similarity=0.445 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.+.++|||+|||+.+++++|+++|+.||.|..|.|..+ +|||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999754 899999999999999999999999999999999999865
Q ss_pred CC
Q 024935 84 RG 85 (260)
Q Consensus 84 ~~ 85 (260)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=124.15 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCC-ccEEEec-C---CCCCCceEEEEecChHHHHHHHHhCC--CCccCCcEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-v~~~~~~-~---~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i 75 (260)
+.++++|||+|||+.+++++|+++|..||. |..|.+. . ++.++|||||+|.+.++|..|+..|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999986 3 35789999999999999999999996 599999999
Q ss_pred EEEEccCCCC
Q 024935 76 RVELAHGGRG 85 (260)
Q Consensus 76 ~v~~~~~~~~ 85 (260)
.|.|+.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986554
No 108
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=8.9e-20 Score=127.39 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4678999999999999999999999999999999944 57789999999999999999999999999999999999998
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6544
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-20 Score=127.43 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
+++++|||+|||+.+++++|+++|++||.|..|.|. ..+|||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 457899999999999999999999999999999986 36789999999999999999999999999999999999764
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=130.70 Aligned_cols=83 Identities=34% Similarity=0.665 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999943 4677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024935 81 HGGRGR 86 (260)
Q Consensus 81 ~~~~~~ 86 (260)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 875543
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=5e-20 Score=122.75 Aligned_cols=75 Identities=27% Similarity=0.550 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++++|||+|||+ ++++++|+++|+.||.|..|.+. +|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 35789999999998 99999999999999999999995 8999999999999999999999999999999999986
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=4.3e-20 Score=120.77 Aligned_cols=77 Identities=23% Similarity=0.510 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..+.++|||+|||+.+++++|+++|++||+|..|.+. .++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3578999999999999999999999999999999994 357789999999999999999997 688899999999987
Q ss_pred c
Q 024935 80 A 80 (260)
Q Consensus 80 ~ 80 (260)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=3.6e-20 Score=130.97 Aligned_cols=83 Identities=35% Similarity=0.560 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3567899999999999999999999999999999953 5788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024935 81 HGGRGR 86 (260)
Q Consensus 81 ~~~~~~ 86 (260)
....+.
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-20 Score=123.75 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..++++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36889999999998 99999999999999999999996 7999999999999999999999999999999999997
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=124.16 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+++++++|+++|++||.|. +....++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999872 222346788999999999999999999999999999999999999865
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=126.75 Aligned_cols=81 Identities=33% Similarity=0.693 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||.|..|.+. .++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999994 35677999999999999999999999999999999999998
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7543
No 117
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-20 Score=129.31 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhhcCCccEEEecCCC------CCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
.+.++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999995432 45699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 024935 75 LRVELAHGGR 84 (260)
Q Consensus 75 i~v~~~~~~~ 84 (260)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997644
No 118
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=3e-20 Score=118.01 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+. ||+..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999943 57789999999999999999998 9999999999999875
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=120.42 Aligned_cols=76 Identities=30% Similarity=0.518 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhC-CCCccCCcEEEEEEcc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~ 81 (260)
..++++|||+|||+.+++++|+++|++||.|..|.+.. ++|||||+|.+.++|..|+..| +|..+.|+.|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35778999999999999999999999999999999974 4799999999999999999988 9999999999999974
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=122.49 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCC-ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC-CccCCcEEEEEEc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~ 80 (260)
+.++++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|+.|+..||| ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666663 489999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 76543
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=1e-19 Score=123.97 Aligned_cols=80 Identities=15% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5789999999999999999999999999999999954 4788999999999999999999965 59999999999999
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7644
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=4.8e-20 Score=125.25 Aligned_cols=76 Identities=33% Similarity=0.586 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+++++++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 799999999999999999999999999999999998764
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 123
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=125.93 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..+.++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999943 567789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876553
No 124
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=121.75 Aligned_cols=76 Identities=30% Similarity=0.462 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc--CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++++|||+|||+++++++|+++|+.| |.|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999886 7899999999999999999999999999999999997
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 125
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=123.14 Aligned_cols=79 Identities=28% Similarity=0.484 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
..+++|||+|||+++++++|+++|+.||.|. +.+. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3478999999999999999999999999996 5553 3467899999999999999999999999999999999999764
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=4.6e-20 Score=133.44 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++|||+|||+++|+++|+++|+.|| .|..|.|. .++.++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999994 4688899999999999999999999999999999999999
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-20 Score=124.64 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe---cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+++++|+++|..||.|..+.+ ..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45688999999999999999999999999986655 346778999999999999999999999999999999999998
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 128
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=9.1e-20 Score=132.54 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++||..||+..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999943 4667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=8.7e-20 Score=124.69 Aligned_cols=76 Identities=30% Similarity=0.628 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 5 ~~~~l~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
++++|||+|||+. +++++|+++|++||+|..|.+ ++|||||+|.+.++|+.|+..||+..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999754
Q ss_pred CC
Q 024935 84 RG 85 (260)
Q Consensus 84 ~~ 85 (260)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.4e-19 Score=131.94 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999954 5789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
....+
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87554
No 131
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-21 Score=124.14 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
+.++++|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35889999999999999999999999999999999953 577899999999999999999999999999999988766
Q ss_pred c
Q 024935 80 A 80 (260)
Q Consensus 80 ~ 80 (260)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=129.88 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccE--EEecC---CCCCCceEEEEecChHHHHHHHHhCCCC----ccCCc
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGH 73 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~--~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~ 73 (260)
+.++++|||+|||+++|+++|+++|++||.|.. |.|.. ++.++|||||+|.+. +|..|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999966 88843 678899999999999 999999999999 99999
Q ss_pred EEEEEEccCCC
Q 024935 74 RLRVELAHGGR 84 (260)
Q Consensus 74 ~i~v~~~~~~~ 84 (260)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=1.8e-20 Score=124.68 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|++||.|..+.+. .++.++|||||+|.++++|++|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999877663 45678899999999999999999999999999999999987
Q ss_pred c
Q 024935 81 H 81 (260)
Q Consensus 81 ~ 81 (260)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 134
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.9e-20 Score=124.01 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..+++|||+|||.++++++|+++|+.||.|..+.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 346899999999999999999999999999999997 4689999999999999999999999999999999999864
No 135
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.5e-20 Score=117.81 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999954 47789999999999999999999998 9999999999986
No 136
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=2.5e-20 Score=122.69 Aligned_cols=77 Identities=34% Similarity=0.622 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.+ |..|+..|||..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999954 4778999999999999 99999999999999999999999764
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 137
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=8.8e-20 Score=125.50 Aligned_cols=79 Identities=54% Similarity=0.979 Sum_probs=66.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee-eEEeeec
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVRE 184 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~-~~~~~~~ 184 (260)
...++|||+|||..+++++|+++|.+||.|..|.++.+ +||||+|.+.++|+.|++.||+.++.|+.+. .++.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45689999999999999999999999999999999876 8999999999999999999999999997643 3455555
Q ss_pred ccC
Q 024935 185 YDH 187 (260)
Q Consensus 185 ~~~ 187 (260)
..+
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 433
No 138
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=123.88 Aligned_cols=77 Identities=27% Similarity=0.540 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC----CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.+.++|||+|||+++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999943 5778999999999999999999 7999999999999999
Q ss_pred ccC
Q 024935 80 AHG 82 (260)
Q Consensus 80 ~~~ 82 (260)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 139
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=124.88 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||+++++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|+.||.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999954 477899999999999999999996 9999999999999997
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.3e-20 Score=125.39 Aligned_cols=77 Identities=30% Similarity=0.484 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|| .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 357999999999999999999999999999999954 4678999999999999999999 799999999999999986
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 141
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-20 Score=123.44 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567899999999999999999999999999888 566778999999999999999999999999999999999998754
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=118.58 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+.++|||+|||+++++++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 999999954 56778999999999999999999 99999999999999997
Q ss_pred CC
Q 024935 82 GG 83 (260)
Q Consensus 82 ~~ 83 (260)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 143
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=115.12 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=67.5
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHHhhc-CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 4 ~~~~~-l~v~nl~~~~t~~~----l~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
.|+.| |||+|||.++++++ |.++|++| |+|.+| ++ |+|||+|.+.++|..|++.|||..|.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 47787 89999999999998 55899999 599998 33 99999999999999999999999999999999
Q ss_pred EEccCCCC
Q 024935 78 ELAHGGRG 85 (260)
Q Consensus 78 ~~~~~~~~ 85 (260)
.|++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99986553
No 144
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=120.51 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++++|||+|||+.+++++|+++|..||+|..|.|.. ++.++|||||+|.+.++|++|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 35789999999999999999999999999999999943 47789999999999999999999 47789999999999
Q ss_pred ccCCCC
Q 024935 80 AHGGRG 85 (260)
Q Consensus 80 ~~~~~~ 85 (260)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 986544
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=131.35 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccE--------EEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
..++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999999876 455567889999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 024935 75 LRVELAHGGR 84 (260)
Q Consensus 75 i~v~~~~~~~ 84 (260)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997644
No 146
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=1.4e-19 Score=118.43 Aligned_cols=78 Identities=32% Similarity=0.421 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
++++++|||+|||+++++++|+++|++| +|..+.+. .++|||||+|.+.++|+.|+..|||..+.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999985 6789999999999999999999999999999999999865
Q ss_pred CC
Q 024935 83 GR 84 (260)
Q Consensus 83 ~~ 84 (260)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 147
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=124.52 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCc-cEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v-~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 567899999999999999999999999999 8888843 577899999999999999999996 999999999999998
Q ss_pred cC
Q 024935 81 HG 82 (260)
Q Consensus 81 ~~ 82 (260)
..
T Consensus 92 ~~ 93 (114)
T 2cpy_A 92 TL 93 (114)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 148
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.2e-19 Score=126.75 Aligned_cols=79 Identities=28% Similarity=0.510 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||+++|+++|+++|+.||+|..|.+. .++.++|||||+|.+.++|+.|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999999999994 46788999999999999999999 699999999999999997
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 149
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=122.18 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..++++|||+|||+++++++|+++|+.|+.|.-+....++.++|||||+|.+.++|++||..||+..|.|+.|.|.++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 36789999999999999999999999886554444345678899999999999999999999999999999999999976
Q ss_pred CC
Q 024935 83 GR 84 (260)
Q Consensus 83 ~~ 84 (260)
..
T Consensus 92 ~~ 93 (102)
T 2fc8_A 92 KG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 150
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=120.52 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccE-EEec--CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~-~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+|+++|+++|+.||.|.. |.|. .++.++|||||+|.++++|++||.. |+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46789999999999999999999999999987 7774 3678899999999999999999996 999999999999998
Q ss_pred cCC
Q 024935 81 HGG 83 (260)
Q Consensus 81 ~~~ 83 (260)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 643
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=9.6e-20 Score=133.56 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|.++|+.||+|..|.|. .++.++|||||+|.+.++|+.||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467789999999999999999999999999999994 36778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 76543
No 152
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=128.31 Aligned_cols=77 Identities=35% Similarity=0.640 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4778999999999999999999999999999999999875
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=1.3e-19 Score=114.96 Aligned_cols=72 Identities=19% Similarity=0.496 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.++++|+.|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999954 47789999999999999999999 5999999999999875
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-20 Score=124.20 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEe--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46889999999999999999999999999888222 2357889999999999999999999 99999999999999997
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.5e-19 Score=129.33 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46789999999999999999999999999999999754 6899999999999999999999999999999999998753
No 156
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=120.33 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec--CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+.++|||+|||+++|+++|+++|+.||. +.|.|. .++.++|||||+|.++++|++||. +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 56789999999999999999999999995 488884 367789999999999999999996 89999999999999987
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 157
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=3.1e-19 Score=125.64 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC---ccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 88998843 47789999999999999999999 99999999999998
Q ss_pred Ecc
Q 024935 79 LAH 81 (260)
Q Consensus 79 ~~~ 81 (260)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 873
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.3e-19 Score=116.99 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57789999996 89999999999999999999995 56899999999999999999999999999999999999765
Q ss_pred CC
Q 024935 84 RG 85 (260)
Q Consensus 84 ~~ 85 (260)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=2.8e-19 Score=122.94 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE-----EEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-----LRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-----i~v~ 78 (260)
+..++|||+|||+++++++|+++|++||+|..|.|..+ |||||+|.+.++|++||..|||..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999754 89999999999999999999999999998 7777
Q ss_pred EccCC
Q 024935 79 LAHGG 83 (260)
Q Consensus 79 ~~~~~ 83 (260)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76653
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.7e-19 Score=124.55 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC---ccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999999 89999843 47789999999999999999999 99999999999999
Q ss_pred Ecc
Q 024935 79 LAH 81 (260)
Q Consensus 79 ~~~ 81 (260)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 885
No 161
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=123.10 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCcc--------CCc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--------~g~ 73 (260)
.+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4678999999999999999999999999999999944 567789999999999999999999999999 578
Q ss_pred EEEEEEccC
Q 024935 74 RLRVELAHG 82 (260)
Q Consensus 74 ~i~v~~~~~ 82 (260)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=5.4e-19 Score=130.57 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999954 47789999999999999999999999999999999999987
Q ss_pred CC
Q 024935 82 GG 83 (260)
Q Consensus 82 ~~ 83 (260)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 163
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=126.48 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEE-Ee--cCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~-~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+++|+++|+++|..||.|..+ .+ ..++.++|||||+|.+.++|++||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999763 33 3567889999999999999999999 9999999999999998
Q ss_pred c
Q 024935 81 H 81 (260)
Q Consensus 81 ~ 81 (260)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=117.03 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
...++|||+|||+++++++|+++|+.||+|..|.+... ... ||||+|.+.++|++|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 56789999999999999999999999999999833221 112 99999999999999999 9999999999999988654
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=117.39 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEE-ecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
..+++|||+|||+++++++|+++|+.||.|..|. +..+. ..+.|||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 64432 345599999999999999999999999999999999976
Q ss_pred C
Q 024935 83 G 83 (260)
Q Consensus 83 ~ 83 (260)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 166
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.6e-19 Score=137.01 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G--~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++|||+|||+++|+++|+++|+.|| .|..|.|. .++.++|||||+|.+.++|++||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999994 3678899999999999999999999999999999999999
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1.9e-18 Score=124.03 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=69.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEEEccCCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 84 (260)
.+|||+||++.+|+++|+++|++||+|..|.|.. ..++|||||+|.+.++|+.|+..|||..|.| +.|.|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3478999999999999999999999999999843 2357899999999999999999999999965 999999998754
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=118.11 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
..+|||+|||+++|+++|+++|+.| .|..|.|.. ++.++|||||+|.++++|++||. ||+..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999954 47789999999999999999995 99999999999998875
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=120.51 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC---ccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++||. ||+..+.|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 56789999999999999999999999998 89999954 37789999999999999999999 99999999999999
Q ss_pred Ecc
Q 024935 79 LAH 81 (260)
Q Consensus 79 ~~~ 81 (260)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
No 170
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-17 Score=113.41 Aligned_cols=82 Identities=55% Similarity=0.961 Sum_probs=70.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce-eeEEe
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS-RAYVR 181 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~-~~~~~ 181 (260)
++....++|||+|||..+++++|+++|.+||.|..|.++.+ +||||+|.+.++|+.|++.||+..+.|+.. ...|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34456789999999999999999999999999999999887 799999999999999999999999998332 24566
Q ss_pred eecccC
Q 024935 182 VREYDH 187 (260)
Q Consensus 182 ~~~~~~ 187 (260)
+....+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 665544
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=114.03 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
+.++++|||+|||+++++++|+++|+.||+|..|.|..+ ++|||||+|.+.++|++|+. ....+.|..|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 457899999999999999999999999999999999654 78999999999999976533 13456899999999876
Q ss_pred CCC
Q 024935 83 GRG 85 (260)
Q Consensus 83 ~~~ 85 (260)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=122.88 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCc----cEEEec--CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v----~~~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|. .++.++|||||+|.+.++|++||.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999975 678884 4678899999999999999999994 999999999999
Q ss_pred EEcc
Q 024935 78 ELAH 81 (260)
Q Consensus 78 ~~~~ 81 (260)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8763
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=1.3e-18 Score=113.64 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhc----C-------CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
++++++|||+|||+++++++|+++|+.| | +|..+.+.. .+|||||+|.+.++|.+|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 899999863 3899999999999999999 89999999
Q ss_pred CcEEEEEE
Q 024935 72 GHRLRVEL 79 (260)
Q Consensus 72 g~~i~v~~ 79 (260)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999864
No 174
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=5.5e-19 Score=124.71 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.+.++|||+|||+++|+++|+++|++|| |..|.|.. ++.++|||||+|.++++|++|| .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4567999999999999999999999999 77999843 4778999999999999999999 599999999999999887
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=3.3e-18 Score=118.34 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCce-EEEEecChHHHHHHHHhCCCCccCC--cEEEEEEccCCC
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 84 (260)
.|||+||++.+|+++|.++|++||+|..|.+.. ..+|+ |||+|.+.++|+.|+..|||..|.| +.|+|+|++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 356999999999999999999999999998853 23677 9999999999999999999999988 899999998654
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=1.6e-18 Score=113.37 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=62.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCc--cCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~~ 81 (260)
.+.++|||+|||+++|+++|+++|++||+|.+|.|..+ ++|||||+|.+.++|++ |++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999753 79999999999999984 34444 569999999987
Q ss_pred CC
Q 024935 82 GG 83 (260)
Q Consensus 82 ~~ 83 (260)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 53
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.9e-18 Score=118.22 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCce--EEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCce-EEEEecChHHHHHHHHhCCCCccCC--cEEEEEE
Q 024935 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (260)
Q Consensus 5 ~~~~--l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (260)
|+++ |||+||++.+|+++|.++|++||+|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 568999999999999999999999999999532 386 9999999999999999999999987 6999999
Q ss_pred ccCCC
Q 024935 80 AHGGR 84 (260)
Q Consensus 80 ~~~~~ 84 (260)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 178
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-20 Score=127.02 Aligned_cols=81 Identities=28% Similarity=0.431 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccE--------EEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
.++++|||+|||+.+++++|+++|+.||.|.. |.+.. ++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 57899999999999999999999999999998 77743 47789999999999999999999999999999
Q ss_pred cEEEEEEccCCC
Q 024935 73 HRLRVELAHGGR 84 (260)
Q Consensus 73 ~~i~v~~~~~~~ 84 (260)
+.|.|.++....
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999997654
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2.2e-18 Score=119.34 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCcc--EEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~--~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++||. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 356899999999999999999999999 577 888853 47789999999999999999999 588999999999988
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=4.7e-18 Score=117.63 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++++|||+|| ++|+++|+++|+.||+|..|.+. .++|||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 47799999996 69999999999999999999996 57899999999999999999999999999999999999764
Q ss_pred C
Q 024935 84 R 84 (260)
Q Consensus 84 ~ 84 (260)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=4e-18 Score=114.68 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCC-----CCCHHHHHHHHhhcCCccEEEecCC----CCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 2 ~~~~~~~l~v~nl~~-----~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
+..|+++|+|.||.. .-++++|+++|++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457999999999963 2378999999999999999999543 5779999999999999999999999999999
Q ss_pred cEEEEEEcc
Q 024935 73 HRLRVELAH 81 (260)
Q Consensus 73 ~~i~v~~~~ 81 (260)
+.|.|.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999985
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=114.12 Aligned_cols=74 Identities=34% Similarity=0.547 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCC------CCCCceEEEEecChHHHHHHHHhCCCCccCCcEEE
Q 024935 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (260)
..++++|||+|||+++|+++|+++|++||+|. +.+..+ +.++|||||+|.+.++|++||..|++ ++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 35789999999999999999999999999999 766432 57899999999999999999998832 5555555
Q ss_pred EEE
Q 024935 77 VEL 79 (260)
Q Consensus 77 v~~ 79 (260)
+..
T Consensus 82 ~~~ 84 (114)
T 2dnl_A 82 CVS 84 (114)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.4e-18 Score=117.03 Aligned_cols=79 Identities=23% Similarity=0.498 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
.++++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3578999999999999999999999999999999944 56778999999999999999999 9999999999999987
Q ss_pred CCC
Q 024935 82 GGR 84 (260)
Q Consensus 82 ~~~ 84 (260)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 184
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.4e-18 Score=115.46 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=67.1
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecC----hHH----HHHHHH--hCCCCc
Q 024935 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (260)
Q Consensus 7 ~~l~v~nl----~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 69 (260)
++|||+|| |+.+++++|+++|+.||+|.+|.+. .|+.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999994 468889999999996 433 788888 799999
Q ss_pred cCCcEEEEEEccC
Q 024935 70 FDGHRLRVELAHG 82 (260)
Q Consensus 70 ~~g~~i~v~~~~~ 82 (260)
|+|+.|.|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998643
No 185
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=2.2e-17 Score=120.99 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=67.6
Q ss_pred EEecChHHHHHHHHhCCCCccC--CcEEEEEEccCCCCCCCCCCCC--CCCCCCCCCCCCCCcceEEecCCCCCCCHHHH
Q 024935 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRHS--SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (260)
Q Consensus 50 V~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l 125 (260)
.+|.+.++|+.|+..|++.... |+.+.+.+........ ..... ........+....+.++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS-YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC-ccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 7899999999999999987665 6666665533211100 00000 00001111233456789999999999999999
Q ss_pred HHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 126 KDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 126 ~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
.++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+..||+..|.|+.+...+
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 99999999999999998754 36999999999999999999999999996544433
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.4e-17 Score=127.45 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999943 5677999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024935 81 HGGRG 85 (260)
Q Consensus 81 ~~~~~ 85 (260)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 86543
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=7.2e-18 Score=128.86 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC-CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
+.++|||+|||+.+|+++|+++|+.||.|..|.|.. .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999999999999999999999999999954 345789999999999999999999999999999999999864
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=111.69 Aligned_cols=80 Identities=24% Similarity=0.389 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCC-----------HHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 4 RASRTLYVGNLPGDIR-----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t-----------~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
.++++|+|.||..... +++|+++|++||+|..|.| .+..++|||||+|.+.++|+.|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5789999999954432 6899999999999999977 444589999999999999999999999999999
Q ss_pred cEEEEEEccCCC
Q 024935 73 HRLRVELAHGGR 84 (260)
Q Consensus 73 ~~i~v~~~~~~~ 84 (260)
++|.|.++.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999987644
No 189
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=122.30 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec---CCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.++++|||+|||+.+++++|.++|+.||.|..+.+. .++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 467899999999999999999999999999999994 45778999999999999999999999999999999999998
Q ss_pred c
Q 024935 81 H 81 (260)
Q Consensus 81 ~ 81 (260)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=8.8e-18 Score=128.55 Aligned_cols=78 Identities=27% Similarity=0.433 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCcc----
Q 024935 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~---------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---- 70 (260)
.++++|||+||+..+ ++++|+++|++||+|.+|.|. .++|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 799999999999999999997 3589999999999999999999999999
Q ss_pred --------CCcEEEEEEccCCC
Q 024935 71 --------DGHRLRVELAHGGR 84 (260)
Q Consensus 71 --------~g~~i~v~~~~~~~ 84 (260)
.|+.|.|.|+....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 191
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=2.1e-17 Score=116.78 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=67.9
Q ss_pred ceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHH
Q 024935 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (260)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l 125 (260)
-++|++|.+...+..|+..++|....|..- +.+ ...++......+|||+|||..+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-------------------~~~~~~~~~~~~l~V~nLp~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-------------------GRPPPDVEGMTSLKVDNLTYRTSPDTL 64 (135)
T ss_dssp -------------------------------CCS-------------------CCSCSSGGGCCCEEEECCCSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-------------------CCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 477888888888889999888866655421 111 111233445689999999999999999
Q ss_pred HHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 126 KDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 126 ~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
+++|++||.|..+.+..+. ..+||||+|.+.++|+.|+..||+..+.|+.+...
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 9999999999999998764 35699999999999999999999999999654443
No 192
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=107.65 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=66.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeEEee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
.+++|||+|||..+++++|+++|++||.|..+.+..+... |||||+|.+.++|+.|++.|||..+.|+ .|.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr----~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK----TIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE----ECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE----EEEE
Confidence 4578999999999999999999999999999999987543 5999999999999999999999999995 4444
Q ss_pred eccc
Q 024935 183 REYD 186 (260)
Q Consensus 183 ~~~~ 186 (260)
...+
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 4443
No 193
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.8e-17 Score=121.73 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
++++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467899999999999999999999999999999953 57889999999999999999999 89999999999999986
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=4.3e-17 Score=110.50 Aligned_cols=76 Identities=30% Similarity=0.559 Sum_probs=67.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
...++|||+|||+.+++++|+++|.+|| .|..+.+......|||||+|.+.++|+.|++.|||.++.|+ .|.+..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr----~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS----VITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE----EEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEE
Confidence 3568999999999999999999999999 89999997666788999999999999999999999999995 555554
Q ss_pred c
Q 024935 185 Y 185 (260)
Q Consensus 185 ~ 185 (260)
.
T Consensus 102 a 102 (111)
T 2jvr_A 102 D 102 (111)
T ss_dssp S
T ss_pred C
Confidence 4
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=2e-17 Score=122.12 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
+.++|||+|||+.+++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999943 5677899999999999999999999999999999999987
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=3.4e-17 Score=123.65 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (260)
.+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999943 5777999999999999999999999999999999999999
Q ss_pred cCCC
Q 024935 81 HGGR 84 (260)
Q Consensus 81 ~~~~ 84 (260)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=2.1e-17 Score=122.34 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccC
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (260)
.++++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 356899999999999999999999999999887 66788999999999999999999999999999999999999864
No 198
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-16 Score=106.99 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
....+|||+|||..+++++|+++|++||.|..|.+..+. ..+||||+|.+.++|+.|++.||+..+.|+.+...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345799999999999999999999999999999999875 34799999999999999999999999999654443
No 199
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=5.3e-17 Score=120.13 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccC---CcEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~ 79 (260)
+.++|||+|||+.+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 578999999999999999999999999999999943 4667899999999999999999999998776 49999999
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 200
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.8e-16 Score=110.82 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
.....++|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|+.|++.||+..+.|..+...
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 344568999999999999999999999999999999987642 5699999999999999999999999999766554
Q ss_pred Eee
Q 024935 180 VRV 182 (260)
Q Consensus 180 ~~~ 182 (260)
+..
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 443
No 201
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=7.1e-17 Score=118.65 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCC--cEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 78 (260)
.++++|||+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999943 56778999999999999999999999999988 999998
Q ss_pred Ec
Q 024935 79 LA 80 (260)
Q Consensus 79 ~~ 80 (260)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=8e-17 Score=121.40 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999953 577899999999999999999995 8999999999999997
Q ss_pred CCCC
Q 024935 82 GGRG 85 (260)
Q Consensus 82 ~~~~ 85 (260)
....
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 6554
No 203
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=2.6e-16 Score=100.02 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=63.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
..-|+|+||++.+++++|+++|.+||+|..+.+.. +.|||||+|.+.++|..|++.||+..+.|+.+...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 46799999999999999999999999999999876 67899999999999999999999999999655443
No 204
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-15 Score=103.29 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+ .|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY----RLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe----EEE
Confidence 3445678999999999999999999999999999999976643 67999999999999999999999999994 555
Q ss_pred eecccCC
Q 024935 182 VREYDHR 188 (260)
Q Consensus 182 ~~~~~~~ 188 (260)
+....+.
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 5555443
No 205
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-16 Score=103.70 Aligned_cols=77 Identities=8% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC--ccccccceeeEEee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVRV 182 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~--~~~~g~~~~~~~~~ 182 (260)
..+..+|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|++.++|+.|+..|++ ..+.| ..|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345689999999999999999999999999999999875 68999999999999999998864 68888 45555
Q ss_pred ecccC
Q 024935 183 REYDH 187 (260)
Q Consensus 183 ~~~~~ 187 (260)
.....
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 55443
No 206
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.3e-16 Score=119.51 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=69.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCC
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (260)
.++|||+|||+.+|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..+ +..|.|+.|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47899999999999999999999999999999943 4678899999999999999999855 56999999999997653
No 207
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=1.3e-16 Score=116.97 Aligned_cols=76 Identities=32% Similarity=0.607 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---CCCCCceEEEEecChHHHHHHHHhCCCCccCCcE--EEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--LRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--i~v~~ 79 (260)
+.++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568899999999999999999999999999999943 5667899999999999999999999999999964 88887
Q ss_pred c
Q 024935 80 A 80 (260)
Q Consensus 80 ~ 80 (260)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 208
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=1.2e-16 Score=107.40 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.3
Q ss_pred CCCCceEEEcCC--CCCCC--------HHHHHHHHhhcCCccEEEecCC-----CCCCceEEEEecChHHHHHHHHhCCC
Q 024935 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 3 ~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
+.|+++|.|.|+ |..+. +++|+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 43443 3689999999999999999653 35789999999999999999999999
Q ss_pred CccCCcEEEEEEcc
Q 024935 68 YDFDGHRLRVELAH 81 (260)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (260)
..|.|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999975
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.7e-16 Score=125.28 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC-CcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (260)
.++++|||+|||..+++++|+++|+.||.|..|.+.... +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999997432 589999999999999999999999999 9999999985
No 210
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=4.3e-16 Score=106.98 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=63.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC--CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.++|||+|||+.+++++|.++|++||.|..|.++.+.. .|||||+|.+.++|+.|+..||+..+.|+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 46899999999999999999999999999999988754 36999999999999999999999999995443
No 211
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.1e-16 Score=103.33 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+...+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3445678999999999999999999999999999999987643 479999999999999999999999999965443
No 212
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=119.02 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC-CcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (260)
.|+++|||+|||..+++++|+++|+.|| .|..+.+..+ .+|||||+|.+.++|..|+..|||..+. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999543 3799999999999999999999999999 9999999986
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 213
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-15 Score=101.61 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=68.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+..+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.|+.+...
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999998864 34699999999999999999999999999665444
Q ss_pred Ee
Q 024935 180 VR 181 (260)
Q Consensus 180 ~~ 181 (260)
+.
T Consensus 88 ~a 89 (102)
T 1x5s_A 88 QA 89 (102)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 214
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-15 Score=100.83 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=69.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC--CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|+..||+..+.|+ .+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK----EVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE----EEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC----eEE
Confidence 345668999999999999999999999999999999988643 47999999999999999999999999994 555
Q ss_pred eecccC
Q 024935 182 VREYDH 187 (260)
Q Consensus 182 ~~~~~~ 187 (260)
+....+
T Consensus 87 V~~a~~ 92 (103)
T 2cqi_A 87 VNWATT 92 (103)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 554444
No 215
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8.3e-16 Score=103.51 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=67.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC--CCCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
......++|||+|||..+++++|+++|.+||.|..+.+..+ ...+||||+|.+.++|+.|+..||+..+.|+.+...
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456789999999999999999999999999999999987 334699999999999999999999999999654443
No 216
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-15 Score=100.92 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=69.6
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC--CCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
.......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|+..||+..+.|+ .|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR----KI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE----EC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE----EE
Confidence 3445668999999999999999999999999999999987743 57999999999999999999999999995 44
Q ss_pred eeecccC
Q 024935 181 RVREYDH 187 (260)
Q Consensus 181 ~~~~~~~ 187 (260)
.+....+
T Consensus 86 ~v~~a~~ 92 (103)
T 2cq3_A 86 EVNNATA 92 (103)
T ss_dssp EEEECCS
T ss_pred EEEEccc
Confidence 5544443
No 217
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-15 Score=99.45 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=65.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
..+..+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|+..||+..+.|+. +.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~----l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN----INVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCB----CEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcE----EEEEE
Confidence 3456899999999999999999999999999999998 569999999999999999999999999954 44454
Q ss_pred ccC
Q 024935 185 YDH 187 (260)
Q Consensus 185 ~~~ 187 (260)
..+
T Consensus 77 a~~ 79 (90)
T 2dnq_A 77 SKN 79 (90)
T ss_dssp SSC
T ss_pred CCC
Confidence 443
No 218
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=8.2e-16 Score=104.45 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=66.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|+.|++.|||..+.|+.+...+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457999999999999999999999999999999998865 35999999999999999999999999996554443
No 219
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=100.65 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=65.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 457999999999999999999999999999999988753 469999999999999999999999999965443
No 220
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=2.1e-16 Score=119.70 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCc--cEEEecCC-CCCCceEEEEecChHHHHHHHHhCCCCccCCc----EEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLR 76 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v--~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~----~i~ 76 (260)
.|+++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|+|||+|.+.++|..||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 367899999999999999999999999999 89988544 45569999999999999999999999999876 677
Q ss_pred EEEc
Q 024935 77 VELA 80 (260)
Q Consensus 77 v~~~ 80 (260)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7664
No 221
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-15 Score=100.92 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..||+..+.|+ .+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR----MLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC----EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc----EEE
Confidence 456899999999999999999999999999999998775 347999999999999999999999999995 455
Q ss_pred eecccCC
Q 024935 182 VREYDHR 188 (260)
Q Consensus 182 ~~~~~~~ 188 (260)
+....+.
T Consensus 82 V~~a~~~ 88 (99)
T 1whw_A 82 VLPSTIK 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 5544443
No 222
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=5.9e-15 Score=101.39 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|+..||+..+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---- 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 3445678999999999999999999999999999999998753 35999999999999999999999999995
Q ss_pred EEeeecccC
Q 024935 179 YVRVREYDH 187 (260)
Q Consensus 179 ~~~~~~~~~ 187 (260)
.|.+....+
T Consensus 86 ~l~V~~a~~ 94 (115)
T 2dgo_A 86 QIRTNWATR 94 (115)
T ss_dssp ECEEEESSC
T ss_pred EEEEEEccC
Confidence 444444433
No 223
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=100.77 Aligned_cols=74 Identities=14% Similarity=0.290 Sum_probs=65.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
...+..+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|+.|++ ||+..+.|+.+..
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 34566899999999999999999999999999999998764 35799999999999999999 9999999965443
No 224
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=5.6e-16 Score=119.69 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC-CcEEEEEEcc
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (260)
.++++|||+|||+.+++++|+++|+.|| .|..|.+... .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3578999999999999999999999999 9999999542 4789999999999999999999999999 9999999987
Q ss_pred C
Q 024935 82 G 82 (260)
Q Consensus 82 ~ 82 (260)
+
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 4
No 225
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=101.90 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=63.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
++|||+|||..+++++|+++|++||.|..+.+..+ ..+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 47999999999999999999999999999999988 7789999999999999999999999999965433
No 226
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=100.04 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
......+|||+|||..+++++|+++|.+||.|. +.++.+...+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345568999999999999999999999999997 67777778899999999999999999999999999965443
No 227
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=4e-15 Score=100.11 Aligned_cols=74 Identities=8% Similarity=0.179 Sum_probs=64.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeecc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (260)
.+..+|||+|||..+++++|+++|.+||.|..+.+.. +||||+|.+.++|+.|+..||+..+.|+ .+.+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEGE----NIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETTE----EEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCCC----EEEEEEc
Confidence 3557999999999999999999999999999999874 4999999999999999999999999995 4455444
Q ss_pred cC
Q 024935 186 DH 187 (260)
Q Consensus 186 ~~ 187 (260)
.+
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 228
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1.5e-15 Score=103.46 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCcceEEecCCCCC-CCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+|||+|||.. +++++|+++|.+||.|..|.+ ..+||||+|.+.++|+.|+..||+..+.|+.+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34579999999999 999999999999999999998 467999999999999999999999999995443
No 229
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-15 Score=100.93 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=69.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+..+|||+|||..+++++|.++|.+||.|..|.+..+.. .+||||+|.+.++|+.|+..||+..+.|+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL----I 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE----E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc----E
Confidence 445678999999999999999999999999999999998753 35999999999999999999999999995 4
Q ss_pred EeeecccCC
Q 024935 180 VRVREYDHR 188 (260)
Q Consensus 180 ~~~~~~~~~ 188 (260)
|.+....+.
T Consensus 87 l~v~~a~~~ 95 (103)
T 2cq0_A 87 LNVEWAKPS 95 (103)
T ss_dssp CEEEESSCC
T ss_pred EEEEECCCC
Confidence 555544443
No 230
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-15 Score=97.90 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=67.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
......+|||+|||..+++++|+++|++||.|..+.+..+ ||||+|.+.++|+.|+..||+..+.|+ .+.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGK----RMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTE----EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCc----EEEEE
Confidence 3456689999999999999999999999999999999855 999999999999999999999999994 55555
Q ss_pred cccCC
Q 024935 184 EYDHR 188 (260)
Q Consensus 184 ~~~~~ 188 (260)
...+.
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 55443
No 231
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=99.61 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=64.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC-----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.++|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..|||..+.|+.+..
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 4789999999999999999999999999999998775 5679999999999999999999999999965443
No 232
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-15 Score=99.40 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCcceEEecCCCCCCCHHHHH----HHHHhcCCccEEEEEeCCC-CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~-~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
....++|||+|||..+++++|+ ++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+ .
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr----~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSK----K 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTE----E
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCe----E
Confidence 3456899999999999999999 9999999999999986643 57999999999999999999999999995 5
Q ss_pred EeeecccC
Q 024935 180 VRVREYDH 187 (260)
Q Consensus 180 ~~~~~~~~ 187 (260)
+.+....+
T Consensus 82 l~V~~a~~ 89 (96)
T 2dgx_A 82 ILVSLATG 89 (96)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 55554433
No 233
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=9.9e-15 Score=100.25 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
.....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|+.|++.||+..+.|+ .
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK----R 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE----E
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE----E
Confidence 3345689999999999999999999999999999999987643 5999999999999999999999999994 5
Q ss_pred EeeecccCC
Q 024935 180 VRVREYDHR 188 (260)
Q Consensus 180 ~~~~~~~~~ 188 (260)
|.+....+.
T Consensus 97 l~V~~a~~~ 105 (115)
T 2cpz_A 97 LKVQLKRSK 105 (115)
T ss_dssp CEEECCCCS
T ss_pred EEEEEcCCC
Confidence 555555443
No 234
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-15 Score=101.22 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=69.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|+.|++.||+..+.|+ .+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR----TI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc----EE
Confidence 3456899999999999999999999999999999998763 357999999999999999999999999994 55
Q ss_pred eeecccCC
Q 024935 181 RVREYDHR 188 (260)
Q Consensus 181 ~~~~~~~~ 188 (260)
.+....+.
T Consensus 85 ~V~~a~~~ 92 (102)
T 2cqb_A 85 RVNLAKPM 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 55555443
No 235
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.5e-15 Score=100.81 Aligned_cols=76 Identities=25% Similarity=0.262 Sum_probs=66.9
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
....+..+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999999999999998875 3469999999999999999999999999954433
No 236
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=100.31 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=67.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-------CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
+..+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+ .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH----K 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe----E
Confidence 457899999999999999999999999999999987644 36999999999999999999999999994 5
Q ss_pred EeeecccC
Q 024935 180 VRVREYDH 187 (260)
Q Consensus 180 ~~~~~~~~ 187 (260)
+.+....+
T Consensus 80 l~V~~a~~ 87 (98)
T 2cpf_A 80 LEVRISER 87 (98)
T ss_dssp CEEECSSC
T ss_pred EEEEEccC
Confidence 55555443
No 237
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=101.84 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=62.3
Q ss_pred CCCcceEEecCCCC-CCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCc--ccccccee
Q 024935 105 RRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSR 177 (260)
Q Consensus 105 ~~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~--~~~g~~~~ 177 (260)
..+..+|||+|||+ .+++++|.++|.+||.|..+.++.+ .+||||+|++.++|..|++.||+. .+.|+.+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999865 469999999999999999999865 48885443
No 238
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=99.20 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcc--ccccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNAF 175 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~--~~g~~ 175 (260)
..++.+|||+|||..+++++|.++|.+||.|..+.++. .+++|||+|++.++|..|+..|++.. +.|+.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34668999999999999999999999999999998875 46799999999999999999999876 66843
No 239
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-15 Score=101.36 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeecc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (260)
...++|||+|||..+++++|+++|.+||.|..|.+..+ .+||||+|.+.++|+.|+..||+..+.|+ .+.+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGH----VVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTE----ECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCc----EEEEEec
Confidence 45689999999999999999999999999999999876 67999999999999999999999999994 4555544
Q ss_pred cCC
Q 024935 186 DHR 188 (260)
Q Consensus 186 ~~~ 188 (260)
.+.
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 240
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-15 Score=101.12 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=69.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcC------Cccccc
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD------DSEFRN 173 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~------~~~~~g 173 (260)
...+..+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|+.|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34566899999999999999999999999999999998774 35799999999999999999999 999999
Q ss_pred cceeeEEeeecccCC
Q 024935 174 AFSRAYVRVREYDHR 188 (260)
Q Consensus 174 ~~~~~~~~~~~~~~~ 188 (260)
+ .+.+....+.
T Consensus 91 ~----~l~v~~a~~~ 101 (111)
T 1x4h_A 91 R----QLKVDLAVTR 101 (111)
T ss_dssp C----EEEEECCCCC
T ss_pred E----EEEEEECCCC
Confidence 5 5555555443
No 241
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=100.72 Aligned_cols=79 Identities=19% Similarity=0.392 Sum_probs=67.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC-----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.+..+..+|||+|||..+++++|+++|..|| |..|.++.+.. .+||||+|.+.++|+.|+ .||+..+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--- 84 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK--- 84 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE---
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc---
Confidence 3445668999999999999999999999999 99999987754 469999999999999999 9999999995
Q ss_pred eEEeeecccC
Q 024935 178 AYVRVREYDH 187 (260)
Q Consensus 178 ~~~~~~~~~~ 187 (260)
.+.+....+
T Consensus 85 -~l~V~~a~~ 93 (104)
T 1wi8_A 85 -RIRVDVADQ 93 (104)
T ss_dssp -ECEEEECCC
T ss_pred -EEEEEEccC
Confidence 445554443
No 242
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-15 Score=100.73 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=66.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC-----CCCEEEEEEcChhHHHHHHHHc-CCccccccce
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~~v~f~~~~~a~~a~~~l-~~~~~~g~~~ 176 (260)
.......+|||+|||..+++++|+++|.+||.|..|.++.+. ..+||||+|.+.++|+.|+..| |+..+.|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 344567899999999999999999999999999999998762 3579999999999999999999 9999999654
Q ss_pred ee
Q 024935 177 RA 178 (260)
Q Consensus 177 ~~ 178 (260)
..
T Consensus 90 ~v 91 (107)
T 2cph_A 90 VL 91 (107)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 243
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-14 Score=99.77 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC---CEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..||+..+.|+.+...
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3455789999999999999999999999999999999987643 599999999999999999999999999554433
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=4e-15 Score=100.68 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccc---cccce
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEF---RNAFS 176 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~---~g~~~ 176 (260)
......+|||+|||..+++++|+++|.+||.|..|.++.+. ..+||||+|.+.++|+.|+..||+..+ .|+.+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34566899999999999999999999999999999998864 357999999999999999999999987 67443
No 245
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=99.31 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+.+..
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4455678999999999999999999999999999999987644 469999999999999999999999999955443
No 246
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-15 Score=99.04 Aligned_cols=83 Identities=7% Similarity=0.106 Sum_probs=71.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCcc-EEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
.+..+|||+|||..+++++|+++|.+||.|. .+.+..+... +||||+|.+.++|+.|+..||+..+.|......+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999987543 6999999999999999999999999997754446
Q ss_pred eeecccCC
Q 024935 181 RVREYDHR 188 (260)
Q Consensus 181 ~~~~~~~~ 188 (260)
.+....+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 66655443
No 247
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4e-15 Score=97.55 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=65.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
.....+|||+|||..+++++|+++|++||.|..+.+..+ ||||+|.+.++|+.|+..||+..+.|+ .+.+..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGK----RINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTE----ECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCc----EEEEEE
Confidence 345679999999999999999999999999999999854 999999999999999999999999995 445554
Q ss_pred ccC
Q 024935 185 YDH 187 (260)
Q Consensus 185 ~~~ 187 (260)
..+
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 248
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-15 Score=100.57 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=67.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
.....+|||+|||..+++++|.++|++||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+....
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999998765 36999999999999999999999999996655443
No 249
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=3.6e-15 Score=98.19 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=65.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC--CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456899999999999999999999999999999998753 3469999999999999999999999999965443
No 250
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.62 E-value=8.9e-16 Score=123.66 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.4
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccC---Cc--E
Q 024935 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (260)
Q Consensus 2 ~~~~~~~l~v~n--l~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~--~ 74 (260)
++.|+++|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 468999999999 578999999999999999999988853 5899999999999999999999998873 45 5
Q ss_pred EEEEEcc
Q 024935 75 LRVELAH 81 (260)
Q Consensus 75 i~v~~~~ 81 (260)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777764
No 251
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.2e-15 Score=97.90 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcC--Cccccccce
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFS 176 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~--~~~~~g~~~ 176 (260)
...+..+|||+|||..+++++|+++|.+||.|..+.++.+ .+||||+|++.++|+.|++.|+ +..+.|+.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 3456689999999999999999999999999999988765 6899999999999999999874 667888543
No 252
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-15 Score=99.77 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=63.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccc--cccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~--g~~~~ 177 (260)
.+..+|||+|||..+++++|+++|++||.|..+.+..+ .+||||+|.+.++|+.|++.||+..+. |+.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 45689999999999999999999999999999998865 679999999999999999999999999 75443
No 253
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-15 Score=99.00 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=63.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEE-EEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
+.++|||+|||..+++++|.++|.+||.|..+ .++.+. ..+||||+|.+.++|+.|+..||+..+.|+.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45799999999999999999999999999999 888763 346999999999999999999999999995443
No 254
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-15 Score=97.74 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=64.6
Q ss_pred CCceEEEcCCC-------CCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 5 ASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 5 ~~~~l~v~nl~-------~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
..+.|.|.-.. ..+++++|+++|++||+|..|.|. +.++|||||+|.+.++|+.|+..+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45677776654 458999999999999999999997 46799999999999999999997555 67999999
Q ss_pred EEccCCC
Q 024935 78 ELAHGGR 84 (260)
Q Consensus 78 ~~~~~~~ 84 (260)
.|+....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9987654
No 255
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.6e-15 Score=98.97 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=65.0
Q ss_pred CCCcceEEecCCCC-CCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEee
Q 024935 105 RRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 105 ~~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
..+..+|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|+.|+..||+..+.|+.+...+..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 34568999999998 99999999999999999999985 5699999999999999999999999999766554443
No 256
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=3.2e-15 Score=101.32 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
.....++|||+|||..+++++|.++|.+||.|..+.+. .+||||+|.+.++|+.|+..|||..+.|+ .+.+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQ----PLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTE----ECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEE
Confidence 34566899999999999999999999999999999998 67999999999999999999999999994 55555
Q ss_pred cccC
Q 024935 184 EYDH 187 (260)
Q Consensus 184 ~~~~ 187 (260)
...+
T Consensus 99 ~a~~ 102 (108)
T 2jvo_A 99 YSKL 102 (108)
T ss_dssp SCSC
T ss_pred EecC
Confidence 5444
No 257
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.6e-15 Score=96.99 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|+.|+..||+..+.|+.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44556789999999999999999999999999999999987543 599999999999999999999999999543
No 258
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=3.3e-15 Score=96.89 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456899999999999999999999999999999997763 3469999999999999999999999999965443
No 259
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=8e-15 Score=99.03 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 4568999999999999999999999999999999998764 3699999999999999999999999987
No 260
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=101.73 Aligned_cols=72 Identities=7% Similarity=0.053 Sum_probs=63.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC--ccccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~--~~~~g~~~~~ 178 (260)
..+..+|||+|||+.+++++|+++|++||.|..+.++.+ .+||||+|++.++|+.|++.|++ ..+.|+.+..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346689999999999999999999999999999999876 57999999999999999999874 5788865433
No 261
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-14 Score=97.89 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=67.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.+..+..+|||+|||..+++++|+++|.+|| |..|.++.+.. .+||||+|.+.++|+.|+ .||+..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---- 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR---- 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE----
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe----
Confidence 3445678999999999999999999999997 99999998864 359999999999999999 8999999995
Q ss_pred EEeeecccC
Q 024935 179 YVRVREYDH 187 (260)
Q Consensus 179 ~~~~~~~~~ 187 (260)
.|.+....+
T Consensus 84 ~l~V~~a~~ 92 (103)
T 2dng_A 84 SLRVDIAEG 92 (103)
T ss_dssp ECEEEECCC
T ss_pred EEEEEEecC
Confidence 445554443
No 262
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=97.99 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=65.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHh-cCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCcc-cccccee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSE-FRNAFSR 177 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~-~~g~~~~ 177 (260)
...+.++|||+|||..+++++|.++|.+ ||.|..+.++.+.. .+||||+|.+.++|..|+..||+.. +.|+.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456689999999999999999999999 99999999998753 3599999999999999999999999 9995443
No 263
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=5.2e-15 Score=96.37 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.+..+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3457999999999999999999999999999999998753 359999999999999999999999999954443
No 264
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=3.4e-15 Score=101.21 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=68.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+...
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4456678999999999999999999999999999999998753 3599999999999999999999999999655443
No 265
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=4e-15 Score=98.79 Aligned_cols=70 Identities=13% Similarity=0.266 Sum_probs=63.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
..+|||+|||..+++++|.++|++||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..+.|+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 46899999999999999999999999999999987743 57999999999999999999999999995433
No 266
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-14 Score=99.80 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCc----cEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..+..+|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999998 6677776667789999999999999999999999999965443
No 267
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=6e-15 Score=97.75 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=66.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3445678999999999999999999999999999999998764 35999999999999999999999999995443
No 268
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-14 Score=101.68 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=69.8
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.......+|||+|||..+++++|.++|..||.|..|.+..+.. .+||||+|.+.++|..|+..||+..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---- 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 3445668999999999999999999999999999999998764 46999999999999999999999999995
Q ss_pred EEeeecccC
Q 024935 179 YVRVREYDH 187 (260)
Q Consensus 179 ~~~~~~~~~ 187 (260)
.|.+.....
T Consensus 113 ~l~v~~a~~ 121 (139)
T 1u6f_A 113 RLKVALAAS 121 (139)
T ss_dssp EEEEEESSC
T ss_pred EEEEEECCC
Confidence 455554443
No 269
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=6.8e-15 Score=94.94 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=62.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.|+.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 74 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 74 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 5899999999999999999999999999999988754 35999999999999999999999999995443
No 270
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.1e-15 Score=98.02 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=62.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCc--cccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~--~~~g~~~~~ 178 (260)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+ ++||||+|++.++|..|++.|++. .+.|+.+..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999988764 679999999999999999998764 488865443
No 271
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-14 Score=96.25 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=68.3
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+ .+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN----IIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE----EEE
Confidence 34568999999999999999999999999999999998763 26999999999999999999999999995 455
Q ss_pred eecccC
Q 024935 182 VREYDH 187 (260)
Q Consensus 182 ~~~~~~ 187 (260)
+....+
T Consensus 90 v~~a~~ 95 (100)
T 2do4_A 90 VAISNS 95 (100)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 554443
No 272
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=96.80 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=67.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccE--------EEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcc
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE 170 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~ 170 (260)
.+..+.++|||+|||..+++++|+++|++||.|.. +.+..+.. .|||||+|.+.++|+.|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44556789999999999999999999999999999 99988754 3599999999999999999999999
Q ss_pred ccccceee
Q 024935 171 FRNAFSRA 178 (260)
Q Consensus 171 ~~g~~~~~ 178 (260)
+.|+.+..
T Consensus 88 ~~g~~l~V 95 (99)
T 2la6_A 88 FSGNPIKV 95 (99)
T ss_dssp SSSSBCEE
T ss_pred eCCcEEEE
Confidence 99976544
No 273
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=97.30 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|++.||+..+.|+.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 345689999999999999999999999999999998854 679999999999999999999999999965443
No 274
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=4.6e-15 Score=103.77 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=66.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+..+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|+.|+..||+..+.|+.+.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999998764 457999999999999999999999999995443
No 275
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=98.10 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCC-ccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC-ccccccceeeEEeee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRVR 183 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~-~~~~g~~~~~~~~~~ 183 (260)
....+|||+|||..+++++|+++|.+||. |..+.+. ..+||||+|.+.++|+.|+..||+ ..+.|+ .+.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~----~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGK----IMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTE----ECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCE----EEEEE
Confidence 34579999999999999999999999999 5555553 357999999999999999999999 999994 45555
Q ss_pred cccCC
Q 024935 184 EYDHR 188 (260)
Q Consensus 184 ~~~~~ 188 (260)
...+.
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 54443
No 276
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.3e-14 Score=100.10 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
......++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+.+..
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999987643 579999999999999999999999999965443
No 277
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=2.8e-14 Score=99.36 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
......++|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..||+..+.|+.+...
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 455677899999999999999999999999999999998875 45799999999999999999999999999655444
Q ss_pred E
Q 024935 180 V 180 (260)
Q Consensus 180 ~ 180 (260)
+
T Consensus 110 ~ 110 (124)
T 2kt5_A 110 L 110 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 278
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=2.5e-16 Score=105.79 Aligned_cols=69 Identities=23% Similarity=0.443 Sum_probs=58.7
Q ss_pred cCCCCCCCHHHHHHHH------------hhcCCccEEEecC--CCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEE
Q 024935 12 GNLPGDIREREVEDLF------------YKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (260)
Q Consensus 12 ~nl~~~~t~~~l~~~F------------~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (260)
.||++.+++++|+++| ++||+|..|.|.. ++.++|||||+|.++++|.+|+..|||..|.|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444455677666666 9999999999954 3567999999999999999999999999999999999
Q ss_pred EEc
Q 024935 78 ELA 80 (260)
Q Consensus 78 ~~~ 80 (260)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 279
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.7e-15 Score=98.34 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=67.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
....+|||+|||..+++++|.++|++||.|..|.++.+. ..|||||+|.+.++|+.|+. +++..+.|+.+......
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 455799999999999999999999999999999999865 45799999999999999999 99999999876655443
No 280
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=9.4e-15 Score=94.70 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=64.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHc-CCcccccccee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSR 177 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l-~~~~~~g~~~~ 177 (260)
......+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|+..| ++..+.|+.+.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 3456689999999999999999999999999999999874 579999999999999999999 99999995443
No 281
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=8.8e-15 Score=99.67 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
......+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.|+.+..
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345668999999999999999999999999999999987643 479999999999999999999999999954433
No 282
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=98.46 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=64.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..||+..+.|+.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 3457999999999999999999999999999999987743 5799999999999999999999999998544
No 283
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-14 Score=95.12 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhc--CCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (260)
..+..+|||+|||..+++++|+++|.+| |.|..+.+. .+||||+|.+.++|+.|+..||+..+.| ..+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3456899999999999999999999999 889888775 4599999999999999999999999999 45666
Q ss_pred ecccCC
Q 024935 183 REYDHR 188 (260)
Q Consensus 183 ~~~~~~ 188 (260)
....+.
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 655443
No 284
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.4e-15 Score=100.45 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCCcceEEecCCCCCCCHHHHH---HHHHhcCCccEEEEEeCCC-------CCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~-------~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
.....+|||+|||+.+++++|. ++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999999987653 26999999999999999999999999994
Q ss_pred ceeeEEeeecccCC
Q 024935 175 FSRAYVRVREYDHR 188 (260)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (260)
.|.+....++
T Consensus 92 ----~l~V~~a~~k 101 (111)
T 2cpi_A 92 ----TLKASLGTTK 101 (111)
T ss_dssp ----EEEEESCCCC
T ss_pred ----EEEEEecccc
Confidence 5555555443
No 285
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=1.4e-14 Score=105.11 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=65.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.+..+|||+|||..+++++|+++|.+||.|..|.++.+... +||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45689999999999999999999999999999999988643 59999999999999999999999999954433
No 286
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-14 Score=96.12 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.......+|||+|||..+++++|+++|.+||.|..|.++.+... +||||+|.+.++|+.|+.. ++..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 34456789999999999999999999999999999999987543 5999999999999999999 9999999 4
Q ss_pred EEeeecccCC
Q 024935 179 YVRVREYDHR 188 (260)
Q Consensus 179 ~~~~~~~~~~ 188 (260)
.+.+....+.
T Consensus 86 ~l~V~~a~~~ 95 (105)
T 2dh8_A 86 NIDPKPCTPR 95 (105)
T ss_dssp EEBCCCSCCS
T ss_pred EEEEEEccCC
Confidence 5666655443
No 287
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1e-14 Score=97.80 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=62.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
...++|||+|||..+++++|+++|.+||.|..+.+. ...+||||+|.+.++|..|+..||+..+.|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 346799999999999999999999999999999988 45689999999999999999999999999943
No 288
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-14 Score=97.83 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.......+|||.|||..+++++|+++|.+||.|..|.++.+. ..+||||+|.+.++|+.|+..+++ .+.|+.+..
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 344567899999999999999999999999999999998764 346999999999999999999998 888854443
Q ss_pred EE
Q 024935 179 YV 180 (260)
Q Consensus 179 ~~ 180 (260)
.+
T Consensus 91 ~~ 92 (116)
T 2cqd_A 91 NL 92 (116)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 289
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.59 E-value=6.9e-15 Score=99.96 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCCCceEEEcCCCC--CC--------CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 3 SRASRTLYVGNLPG--DI--------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 3 ~~~~~~l~v~nl~~--~~--------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
.-|+++|.|.|+-. .. -+++|+++|++||.|.+|.|..+. ++|+|||+|.+.++|.+|+..|||..|+|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35789999999933 21 245789999999999999995443 58999999999999999999999999999
Q ss_pred cEEEEEEcc
Q 024935 73 HRLRVELAH 81 (260)
Q Consensus 73 ~~i~v~~~~ 81 (260)
+.|.|.|+.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999985
No 290
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=2.5e-15 Score=102.85 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCC--CC---CHHHHHHHHhhcCCccEEEecCC-------CCCCceEEEEecChHHHHHHHHhCCCCccC
Q 024935 4 RASRTLYVGNLPG--DI---REREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (260)
Q Consensus 4 ~~~~~l~v~nl~~--~~---t~~~l~~~F~~~G~v~~~~~~~~-------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (260)
.|+++|+|.|+-. .+ -+++|++.|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4899999999942 22 36899999999999999999432 345699999999999999999999999999
Q ss_pred CcEEEEEEcc
Q 024935 72 GHRLRVELAH 81 (260)
Q Consensus 72 g~~i~v~~~~ 81 (260)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 291
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.4e-15 Score=99.50 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=66.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC--CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
......+|||+|||..+++++|+++|++||.|..+.+..+. ..+||||+|.+.++|+.|+..|||..+.|+.+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34566899999999999999999999999999999998764 357999999999999999999999999995443
No 292
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=97.72 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=63.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcC-CccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcC-CccccccceeeEEee
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD-DSEFRNAFSRAYVRV 182 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~-~~~~~g~~~~~~~~~ 182 (260)
.+|||+|||+.+++++|+++|++|| .|..|.++.+. ..|||||+|.+.++|+.|++.++ +..+.|+ .+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr----~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ----KVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE----EEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE----EEEE
Confidence 5899999999999999999999999 89999988764 45799999999999999999874 5678884 5555
Q ss_pred ecccC
Q 024935 183 REYDH 187 (260)
Q Consensus 183 ~~~~~ 187 (260)
....+
T Consensus 78 ~~a~~ 82 (91)
T 2lxi_A 78 HYSDP 82 (91)
T ss_dssp ECCCS
T ss_pred EEcCC
Confidence 55444
No 293
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=1.2e-14 Score=104.30 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=67.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeeccc
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (260)
....|||+||++.+++++|.++|++||.|..|.++....++||||+|.+.++|+.|++.|||..|.|.. +.|.+...+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEEEEec
Confidence 446799999999999999999999999999999987777789999999999999999999999996521 344555444
Q ss_pred C
Q 024935 187 H 187 (260)
Q Consensus 187 ~ 187 (260)
+
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 3
No 294
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-14 Score=98.45 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=68.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCcc--------EEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
......+|||+|||..+++++|+++|.+||.|. .+.++.+.. .+||||+|.+.++|+.|+..||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345668999999999999999999999999998 688887743 46999999999999999999999999
Q ss_pred cccceeeEEeeecccCC
Q 024935 172 RNAFSRAYVRVREYDHR 188 (260)
Q Consensus 172 ~g~~~~~~~~~~~~~~~ 188 (260)
.|+ .|.+....+.
T Consensus 91 ~g~----~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGS----KLKVSLARKK 103 (113)
T ss_dssp TTE----ECEEECSSCC
T ss_pred CCC----EEEEEECCCC
Confidence 994 5555554443
No 295
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=96.19 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=67.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEE-EEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
.....+|||+|||+.+++++|+++|.+||.|..+ .++.+...+.|||+|.+.++|+.|+..||+..+.|+.+...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 58888777789999999999999999999999999655443
No 296
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=97.20 Aligned_cols=71 Identities=7% Similarity=0.106 Sum_probs=61.3
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCC--ccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcc----cccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSE----FRNA 174 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~----~~g~ 174 (260)
.....+|||+|||+.+|+++|.++|++||. +..|.++.++ +.|||||+|.+.++|+.|++.||+.. ++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345579999999999999999999999995 6788888764 34699999999999999999999974 7774
Q ss_pred c
Q 024935 175 F 175 (260)
Q Consensus 175 ~ 175 (260)
.
T Consensus 86 ~ 86 (95)
T 2lkz_A 86 T 86 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 297
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.5e-15 Score=98.42 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=63.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
...+..+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|+.|+..||+..+.|+ .|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR----AIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE----EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe----EEEEE
Confidence 34467899999999999999999999999987322211223457999999999999999999999999995 45555
Q ss_pred cccC
Q 024935 184 EYDH 187 (260)
Q Consensus 184 ~~~~ 187 (260)
...+
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 4444
No 298
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=97.80 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
....+..+|||+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.++|+.|+..|||..+.|+.+..
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999988754 359999999999999999999999999965443
No 299
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=1.4e-14 Score=96.15 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=62.8
Q ss_pred CCCCCcceEEecCCCC-CCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 103 VSRRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+..+|||+|||. .+++++|.++|++||.|..+.+. .+||||+|.+.++|+.|+..|||..+.|+.+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999998 99999999999999999999984 67999999999999999999999999995443
No 300
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-15 Score=100.77 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=64.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
...++|||+|||..+++++|+++|.+||.|..|.+.. ..+||||+|.+.++|+.|+..||+..+.|+.+...+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999888764 567999999999999999999999999997665444
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=100.52 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCCcceEEecCCCCCCCHHHHH----HHHHhcCCccEEEEEeC-CCCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
..+..+|||+|||+.+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|..|+..|||..+.|+.+...
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3456799999999999998876 68999999999888653 456899999999999999999999999999655443
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=97.75 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=63.8
Q ss_pred CCCcceEEecCCCCC-CCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC--ccccccceeeEE
Q 024935 105 RRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYV 180 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~--~~~~g~~~~~~~ 180 (260)
..+..+|||+|||.. +++++|+++|.+||.|..+.+.. ..+||||+|++.++|+.|+..|++ ..+.|+.+...+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456789999999998 99999999999999999999974 467999999999999999998864 568886554443
No 303
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=4.7e-15 Score=95.18 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=59.9
Q ss_pred ceEEecCCCCCC------CHHHHHHHHHhcCCccEEEEEeC--CCCCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 109 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 109 ~~~~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
++|||+|||..+ ++++|+++|++||.|..+.+... ...|||||+|.+.++|+.|+..|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 67999999999999999988743 3457999999999999999999999999996
No 304
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=2e-15 Score=106.46 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=61.9
Q ss_pred ceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHH
Q 024935 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (260)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l 125 (260)
++||.+|..++.+..++..+... +.|...--... ............+|||.|||+.+++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g-----------------~~~~~~~~~~~~~lfV~nLp~~~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG-----------------DSEFTVQSTTGHCVHMRGLPYKATENDI 63 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC-----------------CcccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 67888888888877777654433 22221110000 0001123345579999999999999999
Q ss_pred HHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 126 KDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 126 ~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+++|++|| ++.|.++.+.. .+||||+|.+.++|+.|+ .+|+..+.|+.+..
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred HHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 99999999 77898887643 469999999999999999 79999999965443
No 305
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=5.9e-15 Score=96.70 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=60.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcC--CccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.+|||+|||..+++++|+++|++|| .|..+.++.+.. .|||||+|.+.++|+.|++.|||..+.|+.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE
Confidence 4799999999999999999999999 999999998753 35999999999999999999999999996543
No 306
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=100.82 Aligned_cols=73 Identities=5% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccE--EEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCc----ccccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDS----EFRNA 174 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~----~~~g~ 174 (260)
.....+|||+|||..+++++|+++|.+||.|.. |.++.+. ..|||||+|.+. +|..|+..||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356689999999999999999999999999966 8998776 347999999999 999999999999 99996
Q ss_pred ceee
Q 024935 175 FSRA 178 (260)
Q Consensus 175 ~~~~ 178 (260)
.+..
T Consensus 99 ~l~V 102 (131)
T 2m2b_A 99 TINV 102 (131)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 5443
No 307
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=2.3e-14 Score=98.37 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC-CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.+..+|||+|||..+++++|.++|+.||.|..+.+..+. ..+||||+|.+.++|..|+..|||..+.|+.+...+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456799999999999999999999999999999998764 3579999999999999999999999999976554443
No 308
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-14 Score=97.55 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=68.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
....+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+.. ++..+.| ..|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 4568999999999999999999999999999999998743 46999999999999999998 9999999 4566
Q ss_pred eecccCC
Q 024935 182 VREYDHR 188 (260)
Q Consensus 182 ~~~~~~~ 188 (260)
+....+.
T Consensus 100 V~~a~~~ 106 (116)
T 1x4b_A 100 PKRAVAR 106 (116)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 6655544
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=9.9e-14 Score=95.50 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=64.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCE-EEEEEcChhHHHHHHHHcCCccccccceeeEEeeecc
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (260)
....|||+||++.+++++|.++|++||.|..|.++.. .|| |||+|.+.++|..|++.|||..|.|.. +.|.+...
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~A 99 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYA 99 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEe
Confidence 3456789999999999999999999999999999764 375 999999999999999999999998732 34555555
Q ss_pred cC
Q 024935 186 DH 187 (260)
Q Consensus 186 ~~ 187 (260)
++
T Consensus 100 k~ 101 (124)
T 2e5i_A 100 RP 101 (124)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 310
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=7.6e-15 Score=98.10 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=66.3
Q ss_pred CcceEEecCCCC------CCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccc-cc
Q 024935 107 SEYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 175 (260)
Q Consensus 107 ~~~~~~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g-~~ 175 (260)
..++|||+|||. .+++++|.++|++||.|..+.++.+.. .|||||+|.+.++|+.|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 999999999999999999999988764 4699999999999999999999999998 76
Q ss_pred eeeEE
Q 024935 176 SRAYV 180 (260)
Q Consensus 176 ~~~~~ 180 (260)
+....
T Consensus 85 l~V~~ 89 (100)
T 3ns6_A 85 LFLYT 89 (100)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 65443
No 311
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-14 Score=95.85 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34568999999999999999999999999998776665533 369999999999999999999999999954443
No 312
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=2.2e-14 Score=93.32 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=63.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++ +++..+.|+.+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 34568999999999999999999999999999999998754 3599999999999999996 578888885443
No 313
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=1.2e-14 Score=102.07 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=65.8
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCC---ccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
+.....++|||+|||+.+++++|+++|++||. |..|.++.+.. .|||||+|.+.++|+.|++ ||+..+.|+.+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 44456789999999999999999999999999 88999988755 3599999999999999999 99999999654
Q ss_pred ee
Q 024935 177 RA 178 (260)
Q Consensus 177 ~~ 178 (260)
..
T Consensus 118 ~V 119 (136)
T 2hgl_A 118 EV 119 (136)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 314
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.5e-14 Score=92.25 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
..+.++|||+|| .+++++|+++|.+||.|..|.+. ...+||||+|.+.++|+.|+..||+..+.| ..+.+..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345689999996 89999999999999999999884 566799999999999999999999999998 4556665
Q ss_pred ccCC
Q 024935 185 YDHR 188 (260)
Q Consensus 185 ~~~~ 188 (260)
..+.
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5444
No 315
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=7.3e-15 Score=115.64 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEec--CCCCCCceEEEEecChHHHHHHHHhCCC-CccC---CcEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~---g~~i~v 77 (260)
.++++|||+|||+.+|+++|+++|+.||.|..|.+. .++.++|||||+|.+.++|..|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 467899999999999999999999999999999994 3577899999999999999999999955 4444 999999
Q ss_pred EEccCC
Q 024935 78 ELAHGG 83 (260)
Q Consensus 78 ~~~~~~ 83 (260)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-14 Score=92.45 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=58.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
...+|||+|||..+++++|+++|.+||.|..| +.....+.||||+|.+.++|+.|+. ||+..+.|+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 34699999999999999999999999999987 3322222299999999999999999 99999999543
No 317
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-14 Score=92.30 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=63.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
......+|||+|||..+++++|+++|..| .|..+.++.+.. .+||||+|.+.++|+.|+. ||+..+.|+.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 33456899999999999999999999999 999999998743 3599999999999999999 99999999543
No 318
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=96.89 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=65.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
....+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+.+...
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3457999999999999999999999999999999998754 3699999999999999999999999999655443
No 319
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=91.97 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=62.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
++|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|+.|+..++ ..+.|+.+...
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEE
Confidence 3699999999999999999999999999999987753 4699999999999999999999 99999765443
No 320
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=1.1e-14 Score=96.56 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
++..+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.||+..+.|+.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 3458999999999999999999999999998777776543 36999999999999999999999999995443
No 321
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=5.2e-14 Score=100.13 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.|+.+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445577899999999999999999999999999999998763 357999999999999999999999999995443
No 322
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-14 Score=93.88 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
......+|||.|||+.+++++|+++|.+|| ++.|.++.+.. .+||||+|.+.++|+.|+. +|+..+.|+.+...
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 445668999999999999999999999999 55899988763 3599999999999999995 79999999755443
No 323
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=96.74 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=61.3
Q ss_pred CcceEEecCCCCCC------CHHHHHHHHHhcCCccEEEEEeC--CCCCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 107 SEYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 107 ~~~~~~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
..++|||+|||..+ ++++|.++|++||.|..+.+... ...|||||+|.+.++|+.|+..|||..+.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45799999999999 78999999999999999988832 2357999999999999999999999999995
No 324
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=5.9e-14 Score=91.73 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=64.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
..+|||+|||..+++++|+++|++||.|..+.+..+. ..+||||+|.+.++|+.|+ .||+..+.|+ .+.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~----~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR----QIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE----ECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc----EEEEE
Confidence 4689999999999999999999999999999998774 3469999999999999999 9999999995 44554
Q ss_pred ccc
Q 024935 184 EYD 186 (260)
Q Consensus 184 ~~~ 186 (260)
..+
T Consensus 81 ~a~ 83 (89)
T 3ucg_A 81 PKR 83 (89)
T ss_dssp ETT
T ss_pred Ecc
Confidence 443
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1.1e-13 Score=102.07 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
....+.++|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|+.|++.||+..+.|+.+...
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999998764 34799999999999999999999999999776655
Q ss_pred Eee
Q 024935 180 VRV 182 (260)
Q Consensus 180 ~~~ 182 (260)
+..
T Consensus 163 ~a~ 165 (177)
T 2f3j_A 163 LVA 165 (177)
T ss_dssp EES
T ss_pred Eec
Confidence 543
No 326
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-13 Score=91.34 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=65.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+..+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+.. +..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCC----eE
Confidence 345668999999999999999999999999999999998754 35999999999999999994 667888 45
Q ss_pred EeeecccC
Q 024935 180 VRVREYDH 187 (260)
Q Consensus 180 ~~~~~~~~ 187 (260)
+.+....+
T Consensus 85 l~v~~a~~ 92 (103)
T 2cqg_A 85 CDCKLPNS 92 (103)
T ss_dssp EEEECCCT
T ss_pred EEEEecCC
Confidence 55555444
No 327
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.9e-14 Score=97.08 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=63.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+|||+|||..+++++|+++|..||.|..|.++.+.. .+||||+|.+.++|+.|+ .||+..+.|+.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence 4557999999999999999999999999999999987653 469999999999999999 9999999995443
No 328
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=101.86 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=64.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcC--CccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+|||+|||..+++++|+++|..|| .|..|.++.+... |||||+|.+.++|+.|+..|||..+.|+.+...
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999999999 9999999988543 599999999999999999999999999655443
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=97.07 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=58.1
Q ss_pred CCcceEEe--cCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 106 RSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 106 ~~~~~~~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
.+..+||| +||+..+++++|+++|++||.|..+.+.. ..+||||+|.+.++|++|++.|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45678999 77999999999999999999999888764 467999999999999999999999987
No 330
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=94.90 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccE-EEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+......+|||+|||..+++++|+++|.+||.|.. +.+..+. ..|||||+|.+.++|+.|+.. |+..+.|+.+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34456689999999999999999999999999987 7776653 347999999999999999998 999999975544
No 331
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=97.05 Aligned_cols=73 Identities=16% Similarity=0.345 Sum_probs=61.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC-----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
.....++|||+|||..+++++|+++|+.|| |..+.+..+. ..|||||+|.+.++|..|+ .||+..+.|+.+..
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345668999999999999999999999999 9999998765 3579999999999999999 89999999965443
No 332
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=2.1e-14 Score=90.75 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=60.6
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|+.|++ ||+..+.|+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 489999999999999999999999999999987653 4699999999999999998 999999996554
No 333
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=95.04 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
..+..+|||+|||..+++++|+++|.+||.|..+ .......|||||+|.+.++|+.|+..||+..+.|+ .+.+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----SVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE----EEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEE
Confidence 3466899999999999999999999999998877 33334457999999999999999999999999995 455554
Q ss_pred ccC
Q 024935 185 YDH 187 (260)
Q Consensus 185 ~~~ 187 (260)
..+
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 433
No 334
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-14 Score=90.08 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=55.9
Q ss_pred cceEEecCCCCCCCHHH----HHHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 108 EYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.+.|||.|||..+++++ |.++|.+|| +|+.| .+|+|||.|.+.++|+.|++.|||.++.|+.++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 34599999999999888 558999995 99888 248999999999999999999999999996443
No 335
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=5.5e-14 Score=95.42 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=63.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
....+|||+|||..+++++|+++|..||.|..|.+..+.. .|||||+|.+.++|..|+..++ ..+.|+ .+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~----~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK----TID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTE----EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCE----EEE
Confidence 4568999999999999999999999999999999988753 4799999999999999999874 888884 445
Q ss_pred eecccC
Q 024935 182 VREYDH 187 (260)
Q Consensus 182 ~~~~~~ 187 (260)
+....+
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 544433
No 336
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=4.9e-14 Score=97.07 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=66.0
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCC---ccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
......++|||+|||..+++++|+++|..||. |..|.+..+.. .|||||+|.+.++|+.|+. +|+..+.|+.+
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34456689999999999999999999999999 88999987755 3599999999999999999 99999999655
Q ss_pred eeE
Q 024935 177 RAY 179 (260)
Q Consensus 177 ~~~ 179 (260)
...
T Consensus 91 ~V~ 93 (118)
T 2db1_A 91 EVF 93 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 337
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=2.1e-14 Score=95.48 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=63.5
Q ss_pred CCCcceEEecCCCCCCCHHHHH----HHHHhcCCccEEEEEeC-CCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
..+..+|||+|||..+++++|. ++|.+||.|..+.+... ...+||||+|.+.++|+.|+..|||..+.|+.+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3466899999999999999999 99999999999988743 3457999999999999999999999999995433
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=5.7e-14 Score=97.08 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCE-EEEEEcChhHHHHHHHHcCCccccccceeeEEeeec
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (260)
..-..|||+||++.+++++|.++|++||.|..|.++... +++ |||+|.+.++|+.|++.|||..+.|.. +.+++..
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~--~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTE--EEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCC--cEEEEEe
Confidence 344678899999999999999999999999999888765 455 999999999999999999999998832 3455555
Q ss_pred ccC
Q 024935 185 YDH 187 (260)
Q Consensus 185 ~~~ 187 (260)
.+.
T Consensus 103 ak~ 105 (130)
T 3zzy_A 103 SKL 105 (130)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 339
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.2e-14 Score=95.09 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=62.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.....+|||+|||..+++++|+++|..| .|..|.++.+.. .|||||+|.+.++|+.|+ .+|+..++|+.+.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3456799999999999999999999999 899999987643 579999999999999999 6999999996443
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=5.9e-14 Score=91.30 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhc----C-------CccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
.+..+|||+|||..+++++|+++|.+| | .|..+.+..+ .+||||+|.+.++|+.|+ .||+..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 356799999999999999999999999 8 8888888755 679999999999999999 9999999996
Q ss_pred ce
Q 024935 175 FS 176 (260)
Q Consensus 175 ~~ 176 (260)
.+
T Consensus 81 ~l 82 (87)
T 2hzc_A 81 SL 82 (87)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 341
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.1e-14 Score=94.70 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=62.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCC-ccEEEEE-eC----CCCCEEEEEEcChhHHHHHHHHcC--Cccccccceee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RD----GSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRA 178 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~----~~~~~~~v~f~~~~~a~~a~~~l~--~~~~~g~~~~~ 178 (260)
+.++|||+|||..+++++|.++|.+||. |..+.++ .+ ...+||||+|.+.++|+.|+..|| +..+.|+.+..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999887 44 345799999999999999999996 58999965443
No 342
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=8.8e-14 Score=96.79 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=62.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+ .||+..+.|+.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 457999999999999999999999999999999987643 469999999999999999 899999999543
No 343
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-13 Score=92.78 Aligned_cols=71 Identities=17% Similarity=0.315 Sum_probs=64.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
....++|||+|||..+++++|+++|..||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.+..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 34568999999999999999999999999999999998753 359999999999999999999999997654
No 344
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=2.1e-14 Score=94.11 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=63.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
.+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.+ |+.|+..|||..+.|+.+....
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 4799999999999999999999999999999987643 569999999999 9999999999999997665544
No 345
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=96.04 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=65.1
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCc-cEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
.....+|||+|||..+++++|+++|..||.| ..|.++.+. ..+||||+|.+.++|+.|+.. |+..+.|+.+....
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 889988765 346999999999999999997 99999996554433
No 346
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-13 Score=90.95 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=63.6
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC----CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
....+..+|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|+.|+..||+..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 82 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN---- 82 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE----
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 3445678999999999999999999999774 556665543 36999999999999999999999999995
Q ss_pred EEeeecccCC
Q 024935 179 YVRVREYDHR 188 (260)
Q Consensus 179 ~~~~~~~~~~ 188 (260)
.|.+....+.
T Consensus 83 ~l~V~~a~~~ 92 (102)
T 2fc8_A 83 KVTLDWAKPK 92 (102)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 5555555443
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=5.5e-14 Score=95.12 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=65.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCC---ccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
.....++|||+|||+.+++++|+++|..||. |..|.+..+.. .|||||+|.+.++|+.|+. +|+..++|+.+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3446689999999999999999999999888 88999987654 4699999999999999999 999999997654
Q ss_pred eE
Q 024935 178 AY 179 (260)
Q Consensus 178 ~~ 179 (260)
..
T Consensus 86 V~ 87 (107)
T 2lmi_A 86 VY 87 (107)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 348
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=96.31 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=63.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEe-CC---CCCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
+....++|||+|||+.+++++|.++|..||.|..+.++. .. ..|||||+|.+.++|+.|+. ||+..+.|+.+...
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345668999999999999999999999999998744443 32 24699999999999999999 99999999766554
Q ss_pred Ee
Q 024935 180 VR 181 (260)
Q Consensus 180 ~~ 181 (260)
..
T Consensus 100 ~a 101 (124)
T 1wel_A 100 PI 101 (124)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=3.9e-14 Score=92.36 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=61.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
...+|||+|||..+++++|+++|.+| .|..+.+. ...+||||+|.+.++|+.|++.||+..+.|+.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 34789999999999999999999999 99999885 5678999999999999999999999999995443
No 350
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.49 E-value=6.6e-14 Score=88.38 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=60.3
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+|||+|||..+++++|+++|++||.|..+.+..+. ..+||||+|.+.++|+.|+.. ++..+.|+.+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 48999999999999999999999999999998764 357999999999999999995 888899865543
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=1.3e-13 Score=106.03 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=66.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcC--CccEEEEEeCCCC----CEEEEEEcChhHHHHHHHHcCCccccccceeeEE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (260)
..++|||+||+..+++++|+++|.+|| .|..|.|+.+... +||||+|.+.++|+.||+.||+..|.|+.+.+.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999988543 5999999999999999999999999997665554
Q ss_pred e
Q 024935 181 R 181 (260)
Q Consensus 181 ~ 181 (260)
.
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 352
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=91.72 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=59.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEE----eCCCCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~----~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+|||+|||..+++++|+++|.+||.|.. .++ .....+||||+|.+.++|+.|++ ||+..+.|+.+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 35689999999999999999999999998866 222 23456899999999999999999 999999995443
No 353
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=1.8e-13 Score=89.18 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEeee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (260)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|+. +++..+.+.. ..+.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g--~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKG--ISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETT--EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCC--EEEEEE
Confidence 3456689999999999999999999999999999999875 67899999999999983 5666554221 344444
Q ss_pred ccc
Q 024935 184 EYD 186 (260)
Q Consensus 184 ~~~ 186 (260)
...
T Consensus 80 ~a~ 82 (89)
T 3d2w_A 80 NAE 82 (89)
T ss_dssp ECC
T ss_pred EcC
Confidence 443
No 354
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=97.01 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccE--------EEEE-eCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
.+.++|||+|||..+++++|.++|.+||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~-- 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK-- 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc--
Confidence 45679999999999999999999999998875 3333 345567999999999999999999999999995
Q ss_pred eeEEeeecccC
Q 024935 177 RAYVRVREYDH 187 (260)
Q Consensus 177 ~~~~~~~~~~~ 187 (260)
.|.+...+.
T Consensus 121 --~l~V~~a~~ 129 (143)
T 3egn_A 121 --PMVVQFARS 129 (143)
T ss_dssp --ECEEEECCC
T ss_pred --EEEEEECCC
Confidence 444444433
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=3e-13 Score=93.34 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..+.++|||+|| .+++++|+++|++||.|..|.+. ...+||||+|.+.++|+.|+..||+..+.|+.+..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345689999996 69999999999999999999986 56679999999999999999999999999965443
No 356
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=94.00 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=61.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCc----cEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+|||+|||+.+++++|+++|++||.| ..|.++.+.. .|||||+|.+.++|+.|+.. |+..+.|+.+.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456799999999999999999999999975 6788887643 36999999999999999996 99999986443
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=89.29 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=58.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc--cccceeeEEeeec
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 184 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~--~g~~~~~~~~~~~ 184 (260)
...+|||+|||..+++++|+++|++||.|..+.+..+ ..+||||+|.+.++|+.| ++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 4579999999999999999999999999999999866 678999999999999753 44444 44 4555555
Q ss_pred ccCC
Q 024935 185 YDHR 188 (260)
Q Consensus 185 ~~~~ 188 (260)
..+.
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5443
No 358
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=4.2e-13 Score=92.74 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHhcCCcc--EEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
......+|||+|||+.+++++|+++|++| .|. .|.++.+.. .|||||+|.+.++|+.|+.. ++..+.|+.+..
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 33456789999999999999999999999 677 788876643 57999999999999999985 779999976544
Q ss_pred E
Q 024935 179 Y 179 (260)
Q Consensus 179 ~ 179 (260)
.
T Consensus 116 ~ 116 (126)
T 2hgm_A 116 F 116 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 359
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=99.90 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=63.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccE--------EEEEeCC----CCCEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
.+..+|||+|||..+++++|+++|.+||.|.. +.++.+. ..+||||+|.+.++|+.|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999988 7787663 34699999999999999999999999999
Q ss_pred cce
Q 024935 174 AFS 176 (260)
Q Consensus 174 ~~~ 176 (260)
+.+
T Consensus 85 ~~l 87 (116)
T 2lcw_A 85 NPI 87 (116)
Confidence 543
No 360
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=7.1e-13 Score=88.85 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=62.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
....+|||+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.++|+.|+. ++..+.|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 4568999999999999999999999999999999998763 2699999999999999999 78888885544
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.2e-13 Score=91.84 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=53.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeC-------CCCCEEEEEEcChhHHHHHHHHc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-------GSGTTGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~~~~~~~v~f~~~~~a~~a~~~l 166 (260)
....+|||+|||..+++++|+++|++||.|. +.++.+ ...|||||+|.+.++|+.|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3457899999999999999999999999999 666654 33579999999999999999998
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=9.9e-13 Score=89.32 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=61.7
Q ss_pred ceEEecCC----CCCCCHHHHHHHHHhcCCccEEEEEeCCCC----CEEEEEEcC----hhH----HHHHHH--HcCCcc
Q 024935 109 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTN----YDD----MKHAIK--KLDDSE 170 (260)
Q Consensus 109 ~~~~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~~v~f~~----~~~----a~~a~~--~l~~~~ 170 (260)
..|||+|| |+.+++.+|+++|+.||+|..+.++.++.+ |||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999877 499999996 434 889988 789999
Q ss_pred ccccceeeEE
Q 024935 171 FRNAFSRAYV 180 (260)
Q Consensus 171 ~~g~~~~~~~ 180 (260)
+.|+.++..+
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 9996554443
No 363
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-12 Score=88.28 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecC-hHHHHHHHHhCC--CCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (260)
.+.+.|||+||++. ++.++|+++|+.||+|..|.+.... ..|||.|.+ +++|..|+..|| +..|.|..+++..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46789999999999 9999999999999999999996543 379999999 799999999995 7889999888876
Q ss_pred cc
Q 024935 80 AH 81 (260)
Q Consensus 80 ~~ 81 (260)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=2.4e-12 Score=86.28 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=63.3
Q ss_pred CCcceEEecCCCC-----CCCHHHHHHHHHhcCCccEEEEEeCC-----CCCEEEEEEcChhHHHHHHHHcCCccccccc
Q 024935 106 RSEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (260)
Q Consensus 106 ~~~~~~~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~ 175 (260)
.+..+|+|.|+.. ..++++|+++|++||.|..+.++.++ ..|+|||+|.+.++|..|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3557899999863 23789999999999999999998763 3579999999999999999999999999976
Q ss_pred eeeEEe
Q 024935 176 SRAYVR 181 (260)
Q Consensus 176 ~~~~~~ 181 (260)
+.+.+.
T Consensus 86 i~v~~a 91 (105)
T 2pe8_A 86 VKACFY 91 (105)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 655443
No 365
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=82.42 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=64.3
Q ss_pred CCCCceEEEcCCC----CCCCH----HHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 3 SRASRTLYVGNLP----GDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 3 ~~~~~~l~v~nl~----~~~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
+-|.-||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3567788887766 24444 67999999999999999974 459999999999999999 9999999999
Q ss_pred EEEEEccCCC
Q 024935 75 LRVELAHGGR 84 (260)
Q Consensus 75 i~v~~~~~~~ 84 (260)
|+|+++.+..
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999987654
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.1e-12 Score=85.06 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=62.4
Q ss_pred CCCcceEEecCCCCCCC-----------HHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 105 RRSEYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
..+..+|+|.||..... +++|+++|.+||.|..|.+......|||||+|.+.++|+.|+..|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567899999944432 5799999999999999977555567899999999999999999999999999
Q ss_pred cceeeEE
Q 024935 174 AFSRAYV 180 (260)
Q Consensus 174 ~~~~~~~ 180 (260)
+.+...+
T Consensus 92 r~l~v~~ 98 (112)
T 2dit_A 92 RQITAQA 98 (112)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 6544433
No 367
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=6.5e-12 Score=93.91 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=62.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC---CCEEEEEEcChhHHHHHHHHcCCccccccceeeE
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (260)
...+|||+|||..+++++|+++|++||.|..|.+..+.. .|||||+|.+.++|+.|+..++ ..+.|+.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEE
Confidence 357899999999999999999999999999999988654 3699999999999999998665 48888655433
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.7e-12 Score=98.25 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCCcceEEecCCCCCC---------CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 105 RRSEYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 105 ~~~~~~~~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
.....+|||+||+..+ ++++|.++|++||.|..|.++.. .+||||+|.+.++|+.|+..|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999998 79999999999999999999864 67999999999999999999999999
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=2.3e-11 Score=82.53 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=61.7
Q ss_pred CcceEEecCCCCCC----------CHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 107 SEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 107 ~~~~~~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
+...|.+.|+=... .+++|+++|++||.|..+.+..+...|+|||+|.+.++|+.|+..|||.+++|+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44567777753221 24678999999999999999888778999999999999999999999999999877
Q ss_pred eeEEe
Q 024935 177 RAYVR 181 (260)
Q Consensus 177 ~~~~~ 181 (260)
.+.+.
T Consensus 86 ~v~~~ 90 (114)
T 3s6e_A 86 TAAYV 90 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65554
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.27 E-value=1.4e-11 Score=82.66 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=61.2
Q ss_pred CcceEEecCC--CCCCC--------HHHHHHHHHhcCCccEEEEEeCC------CCCEEEEEEcChhHHHHHHHHcCCcc
Q 024935 107 SEYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 170 (260)
Q Consensus 107 ~~~~~~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~------~~~~~~v~f~~~~~a~~a~~~l~~~~ 170 (260)
+...|.|.|+ |..+. +++|+++|++||.|..+.|+.+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467888887 22332 47899999999999999998764 35799999999999999999999999
Q ss_pred ccccceeeEEe
Q 024935 171 FRNAFSRAYVR 181 (260)
Q Consensus 171 ~~g~~~~~~~~ 181 (260)
++|+.+.+...
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99977665443
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=9.7e-12 Score=100.23 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCcceEEecC--CCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccc
Q 024935 105 RRSEYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (260)
Q Consensus 105 ~~~~~~~~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 172 (260)
..+..+|||+| |+..+++++|+++|++||+|..+.+.. .++||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45667999999 578899999999999999998877654 5689999999999999999999999884
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=2.9e-11 Score=82.62 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=62.1
Q ss_pred CcceEEecCCCCC--C---CHHHHHHHHHhcCCccEEEEEeCCC--------CCEEEEEEcChhHHHHHHHHcCCccccc
Q 024935 107 SEYRVLVTGLPSS--A---SWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (260)
Q Consensus 107 ~~~~~~v~nl~~~--~---~~~~l~~~f~~~g~v~~~~~~~~~~--------~~~~~v~f~~~~~a~~a~~~l~~~~~~g 173 (260)
+..+|+|.|+-.. + .+++|+++|++||.|..+.|+.+.. .|++||+|.+.++|..|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568888887321 2 3689999999999999999987743 2799999999999999999999999999
Q ss_pred cceeeEEe
Q 024935 174 AFSRAYVR 181 (260)
Q Consensus 174 ~~~~~~~~ 181 (260)
+.+.+.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 87765544
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.2e-11 Score=78.99 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCCCceEEEcCCCCC-----CCH----HHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 3 SRASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 3 ~~~~~~l~v~nl~~~-----~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
+-|.-||+|.-++.. +-+ .+|.+.|..||+|..+++..+ -+||+|.+.++|.+||. |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 357789999888743 333 568999999999999999743 39999999999999999 999999999
Q ss_pred EEEEEEc
Q 024935 74 RLRVELA 80 (260)
Q Consensus 74 ~i~v~~~ 80 (260)
.|+|.+-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999864
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=7.2e-12 Score=83.89 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=54.5
Q ss_pred ecCCCCCCCHHHHHHHH------------HhcCCccEEEEEeCC---CCCEEEEEEcChhHHHHHHHHcCCcccccccee
Q 024935 113 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (260)
Q Consensus 113 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (260)
+.||+..+++++|.++| ++||.|..+.+..+. ..|||||+|.+.++|+.|+..|||..+.|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777666655 999999999998775 357999999999999999999999999997654
Q ss_pred e
Q 024935 178 A 178 (260)
Q Consensus 178 ~ 178 (260)
+
T Consensus 100 v 100 (104)
T 1jmt_A 100 A 100 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-10 Score=78.88 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=64.6
Q ss_pred CCCCCcceEEecCCCCC-CCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcC-hhHHHHHHHHcC--Cccccccceee
Q 024935 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKLD--DSEFRNAFSRA 178 (260)
Q Consensus 103 ~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~-~~~a~~a~~~l~--~~~~~g~~~~~ 178 (260)
....+++.|+|+||+.. ++.++|+++|++||.|.+|.+..+.. .|||.|.+ .++|..|+..|| +..|.|..+..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 34567899999999999 99999999999999999999988766 69999999 899999999994 67788754444
Q ss_pred E
Q 024935 179 Y 179 (260)
Q Consensus 179 ~ 179 (260)
.
T Consensus 91 e 91 (121)
T 1owx_A 91 E 91 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6e-10 Score=73.65 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 117 ~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
+..+++++|+++|.+||.|..|.++ ....|||||+|.+.++|+.|+..+++ +.|+
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~ 80 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDN 80 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSS
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCC
Confidence 3568999999999999999999988 45678999999999999999998655 4454
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=4.9e-10 Score=85.81 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=63.0
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHHhhcCCccEEEecC-------CCCCCceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 6 SRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 6 ~~~l~v~nl~~-----~~t~~~l~~~F~~~G~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
+..+.+.|+-. .-.+++|.+.|++||.|..+.+.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555522 245678999999999999999942 236789999999999999999999999999999
Q ss_pred EEEEEEcc
Q 024935 74 RLRVELAH 81 (260)
Q Consensus 74 ~i~v~~~~ 81 (260)
.|.|.++.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.4e-09 Score=67.38 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=56.1
Q ss_pred CcceEEecCCC----CCCCH----HHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 107 SEYRVLVTGLP----SSASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 107 ~~~~~~v~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
+..+|+|.-++ ..+-. .+|.+.|.+||.|..+.+..+. +||+|.+.++|..|+. |||.++.|+.++.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 44566666554 23333 6799999999999999998874 8999999999999998 9999999966555
Q ss_pred EEee
Q 024935 179 YVRV 182 (260)
Q Consensus 179 ~~~~ 182 (260)
.+..
T Consensus 81 ~lkt 84 (91)
T 2dnr_A 81 ALKS 84 (91)
T ss_dssp EECC
T ss_pred EeCC
Confidence 4443
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.7e-08 Score=64.76 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc-----CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEE
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (260)
.++|-|-|||..+++..|+.|++++ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|++|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 6889999999999999999999999 99999999643 4579999999999999988899999999999985
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.9e-08 Score=64.20 Aligned_cols=67 Identities=9% Similarity=0.158 Sum_probs=55.2
Q ss_pred CCcceEEecCCCCC-----CCH----HHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccce
Q 024935 106 RSEYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (260)
Q Consensus 106 ~~~~~~~v~nl~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (260)
++..+|+|.-++.. +-. .+|.+.|.+||+|..+.+..+. +||+|.+.++|..|+. |||.++.|+.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 45568888877642 322 5689999999999999999885 9999999999999999 99999999544
Q ss_pred e
Q 024935 177 R 177 (260)
Q Consensus 177 ~ 177 (260)
+
T Consensus 88 ~ 88 (95)
T 1ufw_A 88 K 88 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.9e-07 Score=60.41 Aligned_cols=88 Identities=23% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-----CCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..++|.|.|||+.+.++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|+..|. .....|.+..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 45789999999999999999999972 6899888862 689999999999999998 446888899999977
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCC
Q 024935 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (260)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~ 121 (260)
..... ...+++.+|++.++
T Consensus 81 ~~~~~-----------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPRA-----------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCCCC-----------------------CCCCCCCSCCCCCC
T ss_pred CCCCC-----------------------cceEeeecCCCCCC
Confidence 54322 24677888887764
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=2.2e-07 Score=60.38 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 5 ASRTLYVGNLPGDI-R----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 5 ~~~~l~v~nl~~~~-t----~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
-.++|+|+||+..+ . .+.++++|..|+++....+.. +=.-..|.|.++++|.+|-..||+..|.|..|+|.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk---SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK---SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET---TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC---cceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 46789999998865 3 257799999999999888852 334679999999999999999999999999999999
Q ss_pred ccC
Q 024935 80 AHG 82 (260)
Q Consensus 80 ~~~ 82 (260)
+..
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 873
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.9e-07 Score=71.25 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhcCCccEEEEEeCCC--------CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 121 SWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 121 ~~~~l~~~f~~~g~v~~~~~~~~~~--------~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.+++|.+.|.+||.|..+.+..+.. .|++||+|.+.++|++|+..|||..++|+.+.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 5688999999999999999986533 369999999999999999999999999988765544
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.2e-06 Score=54.58 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=60.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhc-----CCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
..+|-+-|||..++...|+.++.++ |.+..+.+..+.. -|+|+|.+...|-+|.-.|+|.+|.|+.+++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4678888999999999999999999 9888888776654 5899999999999999999999999966544
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.29 E-value=4.5e-06 Score=53.36 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=59.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---C--CCCCceEEEEecChHHHHHHHHhCCCCccCCc-----EEE
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RLR 76 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-----~i~ 76 (260)
++|.|++||+.+|++++.+.+..+..+....+.. + .....-|||.|.+.+++......++|..|.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998776666621 1 23346899999999999999999999887432 334
Q ss_pred EEEccC
Q 024935 77 VELAHG 82 (260)
Q Consensus 77 v~~~~~ 82 (260)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 555543
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.15 E-value=7e-06 Score=52.38 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=44.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
..++| ++|+.+.-.||.++|+.||.|.--.|.. ..|||.|.+++.|..|+.++.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999655444442 389999999999999999763
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=2e-05 Score=52.76 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=58.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC-cEEEEEEc
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~~ 80 (260)
.+-|.|.+.|+.. ...|...|++||+|.+.... ....+..|.|.+..+|++||. .||..|.| ..|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5678899999885 67888999999999998872 345799999999999999999 89999985 55666554
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.98 E-value=9e-06 Score=52.06 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
..++| ++|+.+.-.||.++|+.||.|.--+|. -..|||.|.+++.|..|+.++.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 34566 999999999999999999944333333 2389999999999999999764
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.84 E-value=4.5e-05 Score=48.99 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=55.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecC---C--CCCCceEEEEecChHHHHHHHHhCCCCccCCc-----E
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----R 74 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~---~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-----~ 74 (260)
.+-+|.|+.||+.+|++++.+.+..+-++....+.. + .....-|||.|.+.+++......++|..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356799999999999999888887665543222211 1 12235799999999999999999999877432 4
Q ss_pred EEEEEcc
Q 024935 75 LRVELAH 81 (260)
Q Consensus 75 i~v~~~~ 81 (260)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4556654
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.72 E-value=0.00031 Score=44.82 Aligned_cols=70 Identities=14% Similarity=0.355 Sum_probs=57.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCC------CEEEEEEcChhHHHHHHHHcCCccccccceee
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (260)
++|.|.+||+.+|++++.+.+.....+........... .-|||.|.+.+++..-.+.++|..+.+.....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 47899999999999999999999887766665544321 26999999999999999999999887765443
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00015 Score=47.09 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=58.0
Q ss_pred cceEEecCCCCCC-C----HHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 108 EYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 108 ~~~~~v~nl~~~~-~----~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
.++|+|.||+..+ . ++.++++|..|+++........-. -..|.|.++++|..|...||+..+.|..++++..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 3689999998765 2 367889999999988877665533 4689999999999999999999999976655543
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.63 E-value=0.0003 Score=44.90 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=44.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcC
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 167 (260)
..++| ++|+.+...+|.++|+.||.|. |..+.+. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999543 4444443 79999999999999999764
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.54 E-value=0.00017 Score=48.85 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccEEE-ecC---------------CC-CCCceEEEEecChHHHHHHHHhCCC
Q 024935 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKI---------------PP-RPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~-~~~---------------~~-~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
...-|.|-+.|+..+ ..|.+.|++||.|.+-. +.. .. ...++..|+|.++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 345677888866654 67788999999987722 111 10 135678999999999999999 899
Q ss_pred CccCCcEEEEEEc
Q 024935 68 YDFDGHRLRVELA 80 (260)
Q Consensus 68 ~~~~g~~i~v~~~ 80 (260)
..|.|.-|=|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987776654
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.45 E-value=0.00034 Score=44.82 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=43.8
Q ss_pred eEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcC
Q 024935 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (260)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 167 (260)
.++| ++|+.+...+|.++|+.|| -..|..+.+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 3344555544 79999999999999999765
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.00086 Score=44.83 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=53.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCcccccc
Q 024935 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (260)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~g~ 174 (260)
...+-|.|-+.|+. ....|..+|++||.|+.... .....+..|.|.+..+|++|+. .||..++|.
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 34567888899888 47788899999999998776 3344589999999999999999 599888763
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0027 Score=41.05 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=46.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHh---c--CCccEEEEEeCCCCCEEEEEEcChhHHHHHHHH
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRR---A--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 165 (260)
...+|.|.|||+.+.++.|.-+|+. - |.|..+.... .-|+|+|.+.+.|+..+++
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 3468999999999999999999987 2 3677777655 4789999999999999985
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.10 E-value=0.00033 Score=58.57 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=42.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 6 ~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.++|||. .|..+++.+|.++|++||+|.++.+..+. .-||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 4789996 79999999999999999999999996432 3699999999999998876
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.87 E-value=0.0016 Score=41.77 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=53.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCC------CCEEEEEEcChhHHHHHHHHcCCccccccceeeEEe
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~------~~~~~v~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (260)
...|.|..||+.+|++++.+.+...-.+.......... -.-|||.|.+.++...-.+.++|..+-+........
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 35799999999999999988887655432222111110 125899999999999999999999987765544433
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.36 E-value=0.005 Score=41.75 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=51.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccE-EEEEe--------------CC---CCCEEEEEEcChhHHHHHHHHcCCc
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFR--------------DG---SGTTGIVDYTNYDDMKHAIKKLDDS 169 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~--------------~~---~~~~~~v~f~~~~~a~~a~~~l~~~ 169 (260)
..-|.|-+.|+. ....|-+.|++||.|+. ..... .+ ...+..|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 356777888665 56667789999999876 21110 01 23478999999999999999 7999
Q ss_pred cccccceeeEE
Q 024935 170 EFRNAFSRAYV 180 (260)
Q Consensus 170 ~~~g~~~~~~~ 180 (260)
.+.|..+++..
T Consensus 85 ii~G~mIGV~P 95 (132)
T 3p3d_A 85 VFNGVLLGVIP 95 (132)
T ss_dssp EETTEECEEEE
T ss_pred EeCcEEEEEEE
Confidence 99986555543
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.38 E-value=0.013 Score=49.13 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=41.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHH
Q 024935 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 165 (260)
..|+|. .|..+++.+|.+.|++||.|..+.+..+ .+.||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 468887 6888999999999999999999998864 345999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.88 E-value=0.06 Score=45.93 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
..++|+ +|+.+...+|.++|+.||.|.-.++. ...|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 467776 99999999999999999965433333 3479999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=91.45 E-value=0.66 Score=28.08 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=44.4
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhhcCC-----ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEEcc
Q 024935 8 TLYVGNL-PGDIREREVEDLFYKYGP-----IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (260)
Q Consensus 8 ~l~v~nl-~~~~t~~~l~~~F~~~G~-----v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (260)
+|||..= -..+.+.+|..++..-+. |-.|.+. -.|.||+-.. +.|..++..|++..+.|+.+.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666322 234788888888876653 4455554 4599999886 66888999999999999999887653
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.29 E-value=1.7 Score=36.98 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCC
Q 024935 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (260)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~ 168 (260)
...++|+ +|..+...+|.+.|+.||.+ .|..+.+. .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 3456665 89999999999999999953 34433332 699999999999999998753
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=79.16 E-value=3.1 Score=29.63 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=39.4
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hhcCCccEEEecCCCCCCceEEEEecChHH-HHHHHH
Q 024935 8 TLYVGNLPG-D--------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEARD-AEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~-~--------~t~~~l~~~F--~~~G~v~~~~~~~~~~~~g~afV~f~~~~~-a~~a~~ 63 (260)
++.|-|+|. . ....+|.+.| ..|.++.-..+.....+.|+|.|+|...-. -..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456779887 2 4457899977 999988876665555678999999985433 333444
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.71 E-value=12 Score=23.22 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=46.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHhcCCccEEEEEeCCCCCEEEEEEcChhHHHHHHHHc
Q 024935 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l 166 (260)
.++.+.|-|+|..+-..++.-.....|---+|..+.. .|.|.|.+.++..-|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 4577888999999988888888888887777776644 6899999999999999886
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.96 E-value=16 Score=22.64 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=51.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcEEEEEE
Q 024935 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (260)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (260)
..+|-|-|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++-..|+..|-+. +..++.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 356778889999998888887777788865666665 578999999999988888764332 234555544
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=66.59 E-value=0.82 Score=31.90 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHHHHhhcCCccEEEecCCCCCCceEEEEec
Q 024935 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (260)
+|+.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4666778888888877654 899999976
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=65.02 E-value=23 Score=22.17 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=25.2
Q ss_pred ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCC
Q 024935 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (260)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (260)
|..+.+. ..-+||.||++...++...++..+.|
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCC
Confidence 4455443 24689999999999999999987765
No 409
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.29 E-value=6.1 Score=22.98 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.6
Q ss_pred CCccEEEecCCCCCCceEEEEecCh
Q 024935 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (260)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (260)
|.|+.|... ++.|||.|.+-
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETTT
T ss_pred eEEEEEecC-----CcEEEEEEccC
Confidence 555555433 67999999873
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.78 E-value=38 Score=20.92 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCc--cEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v--~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
..|+-.+...++..||++.++.+=.| ..|.........--|||.+....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34556788899999999988865434 444443333344579999998888777554
No 411
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=49.21 E-value=8 Score=23.16 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.3
Q ss_pred CCccEEEecCCCCCCceEEEEecCh
Q 024935 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (260)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (260)
|.|+.|... .+.|||.|.+.
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEeccC-----CCEEEEEEcCC
Confidence 455554433 67899999874
No 412
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=46.21 E-value=36 Score=22.31 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=20.0
Q ss_pred CCceEEEEecChH-----HHHHHHHhCCC
Q 024935 44 PPGYAFVEFEEAR-----DAEDAIRGRDG 67 (260)
Q Consensus 44 ~~g~afV~f~~~~-----~a~~a~~~l~~ 67 (260)
-+||.||++...+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6899999999877 77788887776
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=44.66 E-value=46 Score=20.50 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=37.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 8 TLYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
..|+-.++..++..||++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 34566788999999999988854 4 44444443333334579999988777665544
No 414
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=44.65 E-value=11 Score=22.00 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.7
Q ss_pred CCceEEEEecCh
Q 024935 44 PPGYAFVEFEEA 55 (260)
Q Consensus 44 ~~g~afV~f~~~ 55 (260)
..|.|+|.|.+-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 378999999873
No 415
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.10 E-value=5.1 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=9.5
Q ss_pred CCceEEEEecCh
Q 024935 44 PPGYAFVEFEEA 55 (260)
Q Consensus 44 ~~g~afV~f~~~ 55 (260)
.+..|||.|.+-
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 367899999873
No 416
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=38.72 E-value=45 Score=24.01 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=31.3
Q ss_pred EEcCCCCCCCHHHHH--------HHHhhcCCccEEEecCCCCCCceEEEEecCh
Q 024935 10 YVGNLPGDIREREVE--------DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (260)
Q Consensus 10 ~v~nl~~~~t~~~l~--------~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (260)
|+-.||..++.++-. ++|..+|-|.++-|..++.....|.|.|...
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 444899999987644 4556678888888865444445777777653
No 417
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.30 E-value=70 Score=19.74 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=38.7
Q ss_pred ecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHHc
Q 024935 113 VTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (260)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~l 166 (260)
+-.++..++..+|++.++. |+ .|..+.....+.+. -|+|.+..-.+|.+...++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3344778899999999876 45 56667666655443 6999999888887766543
No 418
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=37.53 E-value=37 Score=21.70 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.8
Q ss_pred CCHHHHHHHHhhcCCccEEEec
Q 024935 18 IREREVEDLFYKYGPIAHIDLK 39 (260)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~ 39 (260)
.+++.|.++|+.+|+|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4677899999999999988886
No 419
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=35.33 E-value=19 Score=20.35 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.1
Q ss_pred CCccEEEecCCCCCCceEEEEecCh
Q 024935 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (260)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (260)
|.|+.|... ...|+|.|.+.
T Consensus 22 GtI~~V~~~-----~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSA-----REVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEEecC-----CCEEEEEEcCC
Confidence 455555332 56899999874
No 420
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.00 E-value=47 Score=27.54 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=41.7
Q ss_pred eEEEcCCCCCC----CHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCcE
Q 024935 8 TLYVGNLPGDI----REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (260)
Q Consensus 8 ~l~v~nl~~~~----t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (260)
--+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.+..++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 34788876422 235678888899999888873 245677889999999887 3555555443
No 421
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=33.75 E-value=37 Score=23.39 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=26.5
Q ss_pred ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCC
Q 024935 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (260)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (260)
|..+.+.. .-+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 55665542 36899999999999999999877763
No 422
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.69 E-value=68 Score=18.23 Aligned_cols=54 Identities=9% Similarity=-0.000 Sum_probs=40.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHh
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (260)
.++.|.++.-..=...|...+.. ..|..+.+.. ..+-+.|+|.+.+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~---~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL---NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS---SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc---cCCEEEEEECCHHHHHHHHHH
Confidence 46888898877777888999988 8888888852 245778888866666677764
No 423
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.32 E-value=47 Score=21.44 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=27.5
Q ss_pred CccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCc
Q 024935 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (260)
Q Consensus 32 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 69 (260)
.|.++... ...+||-|||=..+.++..|+..+.+..
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 36666553 3469999999999999999998776543
No 424
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=32.93 E-value=33 Score=28.21 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=36.6
Q ss_pred EEcCCCC---CCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCCc
Q 024935 10 YVGNLPG---DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (260)
Q Consensus 10 ~v~nl~~---~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (260)
+|||+.. .-....+.++..+||+|..+.+- +.-+|...+++.+..++. -++..+.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~~r 79 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTADR 79 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSCBC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhcCC
Confidence 4677642 22345578889999999888773 233566778888888875 344444433
No 425
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.64 E-value=34 Score=26.29 Aligned_cols=48 Identities=29% Similarity=0.292 Sum_probs=32.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 69 (260)
.-+.|+|||++++..-|..++.. +.+..+ |-+...|-|+..+. -.|..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~-------------~lm~QkEva~Rl~A-~pg~k 158 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL-------------VFLVQKEVAERMTA-RPKTP 158 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE-------------EEEEEHHHHHHHTC-CTTST
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE-------------EEEeeeeeeeeccc-CCCCC
Confidence 45789999999999999999976 443322 22333566666554 44543
No 426
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.22 E-value=32 Score=21.73 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=15.7
Q ss_pred EEcCCCCCCCHHHHHHHH-hhcC
Q 024935 10 YVGNLPGDIREREVEDLF-YKYG 31 (260)
Q Consensus 10 ~v~nl~~~~t~~~l~~~F-~~~G 31 (260)
+|.+|.+.+|..||...+ ...|
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~~~G 42 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQAIG 42 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHHHHS
T ss_pred EEECCCCCCcHHHHHHHHHhccC
Confidence 455788899999988854 4434
No 427
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.76 E-value=1.3e+02 Score=20.57 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=38.7
Q ss_pred EEecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHH
Q 024935 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~ 165 (260)
.++-.++..++..+|++.++. |+ .|..|..+.-+.+. -|||.+..-.+|.+....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 444456778899999998876 45 56666666555443 699999887777776554
No 428
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.75 E-value=82 Score=21.92 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.|+-.++..++..||++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 4566788899999999988854 4 44445443322334579999988777666554
No 429
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=30.04 E-value=79 Score=21.81 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.|+--+....+..||++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 4555678899999999888765 3 34444443333334579999988777766543
No 430
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=29.34 E-value=41 Score=20.49 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 024935 12 GNLPGDIREREVEDLFYKYG 31 (260)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G 31 (260)
|.|+..+|+++|.+++....
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999999874
No 431
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=29.13 E-value=1.4e+02 Score=20.56 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=38.6
Q ss_pred EEecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHH
Q 024935 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~ 165 (260)
.++-.++..++..+|++.++. |+ .|..|..+..+.+. -|||.+..-.+|.+....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 344445778899999998876 45 56666666555443 699999887777776554
No 432
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=28.65 E-value=1.5e+02 Score=20.55 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=37.9
Q ss_pred EEecCCCCCCCHHHHHHHHHh-cC-CccEEEEEeCCCCC-EEEEEEcChhHHHHHHHH
Q 024935 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (260)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~ 165 (260)
.++-.++..++..+|++.++. |+ .|..|..+..+.+. -|||.+..-.+|.+....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 344445778888899888875 45 56666666555443 699999888777765543
No 433
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=28.48 E-value=22 Score=21.17 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCccE
Q 024935 20 EREVEDLFYKYGPIAH 35 (260)
Q Consensus 20 ~~~l~~~F~~~G~v~~ 35 (260)
-=||.+++.+||.|+.
T Consensus 5 lYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 5 FYDVQQLLKTFGHIVY 20 (72)
T ss_dssp HHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHCCEEEE
Confidence 3478899999997654
No 434
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.44 E-value=81 Score=21.55 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.|+-.+....+..||++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 4555678899999999888765 3 34444443333334579999988777766543
No 435
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.32 E-value=21 Score=27.63 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=21.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCc
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v 33 (260)
..+.|+|||++++..-|..++.....+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~ 141 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVV 141 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCc
Confidence 457899999999999999998754333
No 436
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.31 E-value=1.3e+02 Score=19.99 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=29.6
Q ss_pred CHHHHHHHHHhcC-CccEEEEEeCCCCCEEEEEEcChhHHHHHHHHcCCccc
Q 024935 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (260)
Q Consensus 121 ~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~ 171 (260)
....+.+.+...| .|..+..........+.+.+++.+.|.++++. .|..+
T Consensus 85 vla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 4456666676666 45444443222234566788888888888875 44443
No 437
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=28.31 E-value=22 Score=21.21 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.4
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 38899998654
No 438
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=28.06 E-value=36 Score=14.93 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcC
Q 024935 20 EREVEDLFYKYG 31 (260)
Q Consensus 20 ~~~l~~~F~~~G 31 (260)
-.+++.+|.+.|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 457888998876
No 439
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=26.89 E-value=77 Score=25.98 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=35.6
Q ss_pred EEcCCCCC---CCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 10 YVGNLPGD---IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 10 ~v~nl~~~---~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
+|||+..- -....+.++..+||+|..+.+- +.-+|...+++.+..++.
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHH
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHh
Confidence 46776432 2345688889999999887763 356788899999999987
No 440
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=26.20 E-value=70 Score=22.15 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-C-CccEEEecCCCCCCceEEEEecChHHHHHHHH
Q 024935 9 LYVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (260)
Q Consensus 9 l~v~nl~~~~t~~~l~~~F~~~-G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (260)
.|+-.+....+..||++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 4555678888989998887754 3 34444443333344579999998877776544
No 441
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=26.12 E-value=26 Score=20.93 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=19.2
Q ss_pred CCceEEEEecChHHHHHHHHhCC-C----CccCCcEEEEEEcc
Q 024935 44 PPGYAFVEFEEARDAEDAIRGRD-G----YDFDGHRLRVELAH 81 (260)
Q Consensus 44 ~~g~afV~f~~~~~a~~a~~~l~-~----~~~~g~~i~v~~~~ 81 (260)
.+||+||+-.+-+++---+..+. + ..-.|..+......
T Consensus 11 ~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 11 AKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTP 53 (74)
T ss_dssp TTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEEC
T ss_pred CCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEE
Confidence 48999998665322221122233 1 22346666665543
No 442
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.46 E-value=50 Score=24.86 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYG 31 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G 31 (260)
..+.|+|||++++..-|..++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 3478999999999999999987543
No 443
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=24.79 E-value=48 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.3
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 024935 12 GNLPGDIREREVEDLFYKYG 31 (260)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G 31 (260)
|.|+..+++++|.+++....
T Consensus 48 Gqi~~ki~e~~L~~lL~~i~ 67 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGIA 67 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHh
Confidence 67889999999999998763
No 444
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=24.73 E-value=95 Score=17.07 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=37.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecC---hHHHHHHHH
Q 024935 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIR 63 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~---~~~a~~a~~ 63 (260)
.++.|.++.-..-...|...+.....|..+.+.. ..+-+.|+|.. .+....++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNF---ALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEET---TTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe---cCCEEEEEECCCCCHHHHHHHHH
Confidence 3577888877666778899999887888888853 24577888843 334445555
No 445
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=24.32 E-value=29 Score=20.14 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.3
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 38999998543
No 446
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=23.99 E-value=30 Score=19.97 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=8.4
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 38999998553
No 447
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.92 E-value=41 Score=29.61 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHh----hcCCccEEEecCC--CCCCceEEEEecChHHHHHHHHhCC
Q 024935 13 NLPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (260)
Q Consensus 13 nl~~~~t~~~l~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~ 66 (260)
..+++.+--+|..+|- .+|-|..+.|... .....++++.|.+.++|..|+..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 3455555557888883 7889999988432 3335678899999999999887653
No 448
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.51 E-value=62 Score=16.28 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHhhc
Q 024935 16 GDIREREVEDLFYKY 30 (260)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (260)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999865
No 449
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=23.16 E-value=32 Score=20.40 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=8.3
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 38999998554
No 450
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.08 E-value=85 Score=21.19 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=30.2
Q ss_pred EcCCCCCCCHHHHHHHHh-hcC--CccEEEe-c------------CCCCCCceEEEEecC
Q 024935 11 VGNLPGDIREREVEDLFY-KYG--PIAHIDL-K------------IPPRPPGYAFVEFEE 54 (260)
Q Consensus 11 v~nl~~~~t~~~l~~~F~-~~G--~v~~~~~-~------------~~~~~~g~afV~f~~ 54 (260)
|-.+..-++++++++++. .++ .|..+.+ . ......+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 566777899999999995 444 5666665 1 113456788888876
No 451
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=22.97 E-value=1.1e+02 Score=19.50 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCccEEEecCCCC-CCceEEEEecC
Q 024935 21 REVEDLFYKYGPIAHIDLKIPPR-PPGYAFVEFEE 54 (260)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~-~~g~afV~f~~ 54 (260)
.+|.+.+...| |.+..|...+. +.-|++++..+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 35777888888 66666644332 34588999877
No 452
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.24 E-value=33 Score=21.38 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=7.7
Q ss_pred CCCceEEEEe
Q 024935 43 RPPGYAFVEF 52 (260)
Q Consensus 43 ~~~g~afV~f 52 (260)
..+||+||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 3489999974
No 453
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=22.12 E-value=60 Score=26.10 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=33.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
.++|+|||++++..-|..++..+..-..+ ... .-...|.|-..|.|+..+. -.|....|
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~~~~~~~l--~~~---~~~~m~lmvQkEvA~Rl~A-~PGsk~yg 202 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSCIGNKNWL--YRF---GKVKMLLWMPSTTARKLLA-RPGMHSRS 202 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHTCGG--GGG---SEEEEEEEEEHHHHHHHHC-CTTSTTCC
T ss_pred eEEEEECCCchHHHHHHHHHHhccccccc--ccc---CcceEEEEeEHHHHHHhcC-CCCCcccc
Confidence 47899999999999888888753200000 000 0012334455677777665 44544443
No 454
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.05 E-value=59 Score=24.56 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh
Q 024935 7 RTLYVGNLPGDIREREVEDLFYK 29 (260)
Q Consensus 7 ~~l~v~nl~~~~t~~~l~~~F~~ 29 (260)
..+.|+|||++++..-|..++..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~ 113 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSY 113 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTT
T ss_pred ceEEEECCCCCccHHHHHHHHhc
Confidence 35789999999999988888864
No 455
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.77 E-value=35 Score=19.68 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=8.6
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+-.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 38999999654
No 456
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.63 E-value=41 Score=28.60 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=27.7
Q ss_pred HHHHHH--hhcCCccEEEecCCCC--CCceEEEEecChHHHHHHH
Q 024935 22 EVEDLF--YKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAEDAI 62 (260)
Q Consensus 22 ~l~~~F--~~~G~v~~~~~~~~~~--~~g~afV~f~~~~~a~~a~ 62 (260)
+|..+| +.+|-|..+.+..... ....+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 356666 3789999999843322 2346788999888876644
No 457
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=21.55 E-value=1.7e+02 Score=24.04 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=33.4
Q ss_pred EEEcCCCCC--CCHHHHHHHHhhcCCccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCccCC
Q 024935 9 LYVGNLPGD--IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (260)
Q Consensus 9 l~v~nl~~~--~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (260)
-+|||+..- -....+.++..+||+|..+.+- +.-+|...+++.+..++. -++..+.+
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~dp~~i~~il~-~~~~~f~~ 76 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG------SCPIVVLNGERAIHQALV-QQGSAFAD 76 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTSCB
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHH-hCcHhhCC
Confidence 457777432 2345678888999999888763 355777889999888885 23344433
No 458
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.29 E-value=26 Score=26.61 Aligned_cols=26 Identities=35% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCc
Q 024935 8 TLYVGNLPGDIREREVEDLFYKYGPI 33 (260)
Q Consensus 8 ~l~v~nl~~~~t~~~l~~~F~~~G~v 33 (260)
-..|+|||++++..-|..++...+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~ 123 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCI 123 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCCh
Confidence 34899999999999999999865443
No 459
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.14 E-value=66 Score=14.35 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=9.9
Q ss_pred CHHHHHHHHhhc
Q 024935 19 REREVEDLFYKY 30 (260)
Q Consensus 19 t~~~l~~~F~~~ 30 (260)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 578899988877
No 460
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=20.79 E-value=76 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=27.1
Q ss_pred ccEEEecCCCCCCceEEEEecChHHHHHHHHhCCCCc
Q 024935 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (260)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 69 (260)
|.++... ...+||-|||=..+.++..|+..+.+..
T Consensus 139 I~Si~~~--d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSIFQR--DNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEEECC--TTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEEEec--CCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 5555443 2468999999999999999999887753
No 461
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.23 E-value=39 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.6
Q ss_pred CCceEEEEecC
Q 024935 44 PPGYAFVEFEE 54 (260)
Q Consensus 44 ~~g~afV~f~~ 54 (260)
.+||+||+-.+
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 48999999654
No 462
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=20.03 E-value=51 Score=19.29 Aligned_cols=13 Identities=8% Similarity=0.365 Sum_probs=9.7
Q ss_pred CCceEEEEecChH
Q 024935 44 PPGYAFVEFEEAR 56 (260)
Q Consensus 44 ~~g~afV~f~~~~ 56 (260)
.+..|||.|.+..
T Consensus 40 ~~~~ClV~FeD~S 52 (69)
T 2xk0_A 40 TSDQYLIRFDDQS 52 (69)
T ss_dssp CSSCEEEEETTCC
T ss_pred CCceEEEEecCCc
Confidence 3678999998743
Done!