BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024936
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RPU|A Chain A, Crystal Structure Of Cirv P19 Bound To Sirna
pdb|1RPU|B Chain B, Crystal Structure Of Cirv P19 Bound To Sirna
Length = 172
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 92 DQKVGAFAPPQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIV------ 145
D G P ++P + T+ RL N +S + NPLGF +S GK+V
Sbjct: 20 DGGSGGITSPFKLPD----ESPSWTEWRLYNDETNSNQDNPLGFKESWGFGKVVFKRYLR 75
Query: 146 ---VAVDVDEVLGNFVSALNRFIADRY 169
+ VLG++ + A R+
Sbjct: 76 YDRTEASLHRVLGSWTGDSVNYAASRF 102
>pdb|1R9F|A Chain A, Crystal Structure Of P19 Complexed With 19-Bp Small
Interfering Rna
Length = 136
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 116 TDARLVNGRGSSERGNPLGFFDSHLHGKIV---------VAVDVDEVLGNFVSALNRFIA 166
T+ RL N +S + NPLGF +S GK+V + VLG++ + A
Sbjct: 18 TEWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAA 77
Query: 167 DRY 169
R+
Sbjct: 78 SRF 80
>pdb|2JDX|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase, Deletionmutant Atdeltam302
Length = 385
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 202 FKTPYFKTGIHPLPGAQKALHKLSRYCLGNML--------SRTIPLNGLRSIIRDYFRRS 253
+KTP F++ G A+ + +GN + SR RSII+DYF R
Sbjct: 116 YKTPDFEST-----GLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRG 170
Query: 254 TLATTLP 260
TT P
Sbjct: 171 AKWTTAP 177
>pdb|1JDX|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With L-Norvaline
pdb|5JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Glycine
pdb|6JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Gamma-Amino Butyric
Acid
pdb|7JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Delta-Amino Valeric
Acid
pdb|8JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With L-Alanine
pdb|9JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Alpha-Amino Butyric
Acid
Length = 386
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 202 FKTPYFKTGIHPLPGAQKALHKLSRYCLGNML--------SRTIPLNGLRSIIRDYFRRS 253
+KTP F++ G A+ + +GN + SR RSII+DYF R
Sbjct: 116 YKTPDFEST-----GLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRG 170
Query: 254 TLATTLP 260
TT P
Sbjct: 171 AKWTTAP 177
>pdb|1JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
pdb|2JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
pdb|3JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
Length = 423
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 202 FKTPYFKTGIHPLPGAQKALHKLSRYCLGNML--------SRTIPLNGLRSIIRDYFRRS 253
+KTP F++ G A+ + +GN + SR RSII+DYF R
Sbjct: 153 YKTPDFEST-----GLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRG 207
Query: 254 TLATTLP 260
TT P
Sbjct: 208 AKWTTAP 214
>pdb|4JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
Length = 423
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 202 FKTPYFKTGIHPLPGAQKALHKLSRYCLGNML--------SRTIPLNGLRSIIRDYFRRS 253
+KTP F++ G A+ + +GN + SR RSII+DYF R
Sbjct: 153 YKTPDFEST-----GLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRG 207
Query: 254 TLATTLP 260
TT P
Sbjct: 208 AKWTTAP 214
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 111 AAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYS 170
A E C V G++ GNPL S + GK++ ++ E+L + F+ +
Sbjct: 265 ATEECARVMTVGTHGTTYGGNPLA---SAVAGKVLELINTPEMLNGVKQRHDWFVERLNT 321
Query: 171 LNH 173
+NH
Sbjct: 322 INH 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,823,329
Number of Sequences: 62578
Number of extensions: 260559
Number of successful extensions: 555
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 8
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)