Query 024937
Match_columns 260
No_of_seqs 186 out of 637
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 96.5 0.0043 1.5E-07 47.9 5.9 72 86-159 33-105 (110)
2 2i68_A Protein EMRE; transmemb 96.0 0.0032 1.1E-07 50.8 2.8 72 87-160 34-106 (137)
3 2nml_A Enhancer of rudimentary 9.2 2.4E+02 0.0083 21.1 3.1 23 176-198 25-47 (104)
4 3ixz_B Potassium-transporting 6.9 3.4E+02 0.012 23.9 3.5 33 6-42 25-64 (290)
5 3arc_T Photosystem II reaction 4.6 4.3E+02 0.015 15.6 1.8 18 141-158 5-22 (32)
6 2obx_A DMRL synthase 1, 6,7-di 4.3 2.9E+02 0.0098 22.1 1.2 48 107-158 58-105 (157)
7 1di0_A Lumazine synthase; tran 4.3 3E+02 0.01 22.0 1.3 48 107-158 57-104 (158)
8 1rvv_A Riboflavin synthase; tr 3.7 3.2E+02 0.011 21.7 1.0 47 107-157 59-105 (154)
9 3nq4_A 6,7-dimethyl-8-ribityll 3.6 3.3E+02 0.011 21.8 1.0 48 107-158 60-107 (156)
10 1kz1_A 6,7-dimethyl-8-ribityll 3.5 3.4E+02 0.012 21.7 1.0 47 107-157 65-111 (159)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.52 E-value=0.0043 Score=47.86 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhccCchHHHHH-hhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhcccC
Q 024937 86 YVKLSAVLMGSHGLTKGSLAFLNYPAQIMF-KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (260)
Q Consensus 86 y~~~s~~~~~~~~~~N~AL~yIs~P~~il~-KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~~~ 159 (260)
+......+..+..+-+.|++++|...---. .+..++-+.++|+++ ++++-+..|++.+.+|.+|+++....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344456677888888999999998887555 999999999999999 889999999999999999999887755
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.03 E-value=0.0032 Score=50.78 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhHHHhhccCchHHHHH-hhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhcccCC
Q 024937 87 VKLSAVLMGSHGLTKGSLAFLNYPAQIMF-KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADA 160 (260)
Q Consensus 87 ~~~s~~~~~~~~~~N~AL~yIs~P~~il~-KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~~~~ 160 (260)
+...+.+..+..+-+.++++++...--.. .+..++.+.++|+++ ++++-++.|++.+++|.+|+++....+.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44456778888899999999998865555 999999999999999 8899999999999999999999887553
No 3
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=9.19 E-value=2.4e+02 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCc
Q 024937 176 GALVMDSFLGNLQEVIFTVNPDT 198 (260)
Q Consensus 176 ~sL~~dg~~~~~qe~l~~~~~~~ 198 (260)
+..++||+...+.|++.+.+|..
T Consensus 25 v~~~megiC~iYE~~LK~~nP~~ 47 (104)
T 2nml_A 25 VNECMEGVCKMYEEHLKRMNPNS 47 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 46789999999999999877643
No 4
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=6.88 E-value=3.4e+02 Score=23.88 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=21.5
Q ss_pred cceeEEeeecCCCchhHHHHH-------HHHHHHHHHhHHHHHh
Q 024937 6 QARSLFGVSLSDRPRWQQFLI-------CSSGFFFGYLVNGICE 42 (260)
Q Consensus 6 ~~~~~~g~~~~~~~~~~~l~~-------~~~gIf~~~~~~g~~q 42 (260)
....++|..-+ +|.++++ +.+|+|+.| .|+.+|
T Consensus 25 ~t~~~lGRT~~---sW~~IllFYliFY~~LaglFa~~-m~v~l~ 64 (290)
T 3ixz_B 25 DTGQMLGRTLS---RWVWISLYYVAFYVVMSGIFALC-IYVLMR 64 (290)
T ss_pred CCCceeCcchh---hHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34567776665 7776544 667888865 666665
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.57 E-value=4.3e+02 Score=15.59 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHhccc
Q 024937 141 EYVAALLLVFGLILFTMA 158 (260)
Q Consensus 141 ~~~~v~lit~Gv~lf~~~ 158 (260)
-|...+..|+|++.|+..
T Consensus 5 vYt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 5 TYVFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 366777888888877653
No 6
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=4.34 E-value=2.9e+02 Score=22.10 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=34.5
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhccc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~~ 158 (260)
||+-.+-+.|+.+-=.++.+|++++| ..|... |+ .--++-|+.-..+.
T Consensus 58 iP~aa~~la~~~~yDavIaLG~VIrG--~T~Hfd-~V-a~~vs~Gl~~v~L~ 105 (157)
T 2obx_A 58 IPLHARTLAETGRYGAVLGTAFVVNG--GIYRHE-FV-ASAVIDGMMNVQLS 105 (157)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEECCCC--SSBCCH-HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeeccccC--CCcHHH-HH-HHHHHHHHHHHHhh
Confidence 56667889999999999999999965 666554 43 33445576666553
No 7
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=4.27 E-value=3e+02 Score=22.01 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=34.5
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhccc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~~ 158 (260)
||+-.+-+.|+.+-=.++.+|++++| ..|... |+ .--++-|+.-..+.
T Consensus 57 iP~aa~~la~~~~yDavIaLG~VIrG--~T~Hfd-~V-a~~vs~Gl~~v~L~ 104 (158)
T 1di0_A 57 IPLHAKTLARTGRYAAIVGAAFVIDG--GIYDHD-FV-ATAVINGMMQVQLE 104 (158)
T ss_dssp HHHHHHHHHHTSCCSEEEEEEECCCC--SSBCCH-HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeeccccC--CCcHHH-HH-HHHHHHHHHHHHhh
Confidence 56667889999999999999999965 666554 43 33445576666553
No 8
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=3.70 E-value=3.2e+02 Score=21.72 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=33.5
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhcc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~ 157 (260)
+|+-.+-+.|+.+-=.++.+|++++| ..|.. +|++ --++-|+.-..+
T Consensus 59 iP~aa~~la~~~~yDavIaLG~VIrG--~T~Hf-d~V~-~~vs~Gl~~v~l 105 (154)
T 1rvv_A 59 IPFAAKKMAETKKYDAIITLGTVIRG--ATTHY-DYVC-NEAAKGIAQAAN 105 (154)
T ss_dssp HHHHHHHHHHTSCCSEEEEEEEEECC--SSSHH-HHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeeeeecC--CchHH-HHHH-HHHHHHHHHHHh
Confidence 56667888999999999999999965 55544 4433 344557665555
No 9
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=3.62 E-value=3.3e+02 Score=21.78 Aligned_cols=48 Identities=29% Similarity=0.284 Sum_probs=33.8
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhccc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~~ 158 (260)
+|+-.+-+.|+.+-=.++.+|++++| ..|.. +|++- -++-|+.=..+.
T Consensus 60 iP~aa~~la~~~~yDavIaLG~VIrG--~T~Hf-d~Va~-~v~~Gl~~v~L~ 107 (156)
T 3nq4_A 60 LPLATEALAKSGKYDAVVALGTVIRG--GTAHF-EYVAG-GASNGLASVAQD 107 (156)
T ss_dssp HHHHHHHHHHHCSCSEEEEEEEEECC--SSTHH-HHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeeeeecC--CchHH-HHHHH-HHHHHHHHHHhc
Confidence 56667888899999999999999965 55543 44443 344476655553
No 10
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=3.55 E-value=3.4e+02 Score=21.74 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=33.4
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhcc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~ 157 (260)
||+-.+-+.|+.+-=.++.+|++++| ..|.. +|++ --++-|+.=..+
T Consensus 65 iP~aa~~la~~~~yDavIaLG~VIrG--~T~Hf-d~Va-~~v~~Gl~~v~L 111 (159)
T 1kz1_A 65 LPQGIRASIARNTYDAVIGIGVLIKG--STMHF-EYIS-EAVVHGLMRVGL 111 (159)
T ss_dssp HHHHHHHHHHHSCCSEEEEEEEEECC--SSSHH-HHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecccccC--CchHH-HHHH-HHHHHHHHHHHh
Confidence 55667889999999999999999965 55544 4443 334456665555
Done!