Query 024937
Match_columns 260
No_of_seqs 186 out of 637
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 17:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nmla1 d.330.1.1 (A:2-101) En 14.7 82 0.006 21.8 3.8 25 176-200 24-48 (100)
2 d1di0a_ c.16.1.1 (A:) Lumazine 11.9 44 0.0032 24.7 1.7 47 107-157 49-95 (148)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 5.3 4E+02 0.029 17.1 5.3 15 141-155 68-82 (103)
4 d1c2ya_ c.16.1.1 (A:) Lumazine 4.6 1E+02 0.0075 22.7 0.7 32 107-140 59-90 (155)
5 d1oyja2 c.47.1.5 (A:2-85) Clas 4.2 1.4E+02 0.01 19.1 1.0 28 3-30 1-28 (84)
6 d2p7tc1 f.14.1.1 (C:86-119) Po 3.6 2.6E+02 0.019 14.8 1.8 15 141-155 4-18 (34)
7 d1kz1a_ c.16.1.1 (A:) Lumazine 3.4 1.7E+02 0.012 21.3 1.0 47 107-157 57-103 (150)
8 d1nqua_ c.16.1.1 (A:) Lumazine 3.2 1.6E+02 0.012 21.4 0.7 32 107-140 59-90 (154)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 2.8 7.5E+02 0.055 20.1 5.1 17 174-190 94-110 (472)
10 d1x58a1 a.4.1.1 (A:8-56) Hypot 2.8 2.1E+02 0.015 16.8 0.8 12 200-211 18-29 (49)
No 1
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.70 E-value=82 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCccc
Q 024937 176 GALVMDSFLGNLQEVIFTVNPDTTQ 200 (260)
Q Consensus 176 ~sL~~dg~~~~~qe~l~~~~~~~~~ 200 (260)
+..++||+...+.|++.+.+|....
T Consensus 24 v~~cmegiC~iYEe~Lk~~~p~~~~ 48 (100)
T d2nmla1 24 VNECMEGVCKMYEEHLKRMNPNSPS 48 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4678999999999999987764443
No 2
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=11.90 E-value=44 Score=24.72 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=32.8
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhcc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~ 157 (260)
+|+..+.+.|+.+.-.+..+|++++| +.+... |++=. ++-|+.=.++
T Consensus 49 iP~aa~~l~~~~~~daiI~lG~VIkG--eT~H~e-~I~~~-v~~gl~~v~l 95 (148)
T d1di0a_ 49 IPLHAKTLARTGRYAAIVGAAFVIDG--GIYDHD-FVATA-VINGMMQVQL 95 (148)
T ss_dssp HHHHHHHHHHTSCCSEEEEEEECCCC--SSBCCH-HHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHhhcccCeEEEEEEEecC--CchHHH-HHHHH-HHHHHHHHHH
Confidence 67788899999999999999999965 776664 43322 2334443333
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.32 E-value=4e+02 Score=17.11 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHh
Q 024937 141 EYVAALLLVFGLILF 155 (260)
Q Consensus 141 ~~~~v~lit~Gv~lf 155 (260)
|.++++.+..|+.++
T Consensus 68 r~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 68 RCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 4
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=4.55 E-value=1e+02 Score=22.72 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=25.3
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCch
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAH 140 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~ 140 (260)
+|+..+.+.|+.+.=.+..+|++++| +.+...
T Consensus 59 iP~~~~~l~~~~~~daiIaLG~VIkG--eT~H~e 90 (155)
T d1c2ya_ 59 LGVTAQALGKSGKYHAIVCLGAVVKG--DTSHYD 90 (155)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECCCC--SSTHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEcC--CchHHH
Confidence 45667888999999999999999965 665544
No 5
>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=4.17 E-value=1.4e+02 Score=19.07 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.2
Q ss_pred ccccceeEEeeecCCCchhHHHHHHHHH
Q 024937 3 HEEQARSLFGVSLSDRPRWQQFLICSSG 30 (260)
Q Consensus 3 ~~~~~~~~~g~~~~~~~~~~~l~~~~~g 30 (260)
.|++++++.|...+--.+..++++-.-|
T Consensus 1 a~~~~l~Ly~~~~Sp~~~rvr~~L~~kg 28 (84)
T d1oyja2 1 AEEKELVLLDFWVSPFGQRCRIAMAEKG 28 (84)
T ss_dssp CCSCCEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCCceEEEcCCCChHHHHHHHHHHHcC
Confidence 4788999999877755555665554444
No 6
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.62 E-value=2.6e+02 Score=14.85 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHh
Q 024937 141 EYVAALLLVFGLILF 155 (260)
Q Consensus 141 ~~~~v~lit~Gv~lf 155 (260)
+.++|..+.+|+.-+
T Consensus 4 rcvavvvmvagits~ 18 (34)
T d2p7tc1 4 RCVAVVVMVAGITSF 18 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeccchh
Confidence 456677777777543
No 7
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=3.41 E-value=1.7e+02 Score=21.28 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=30.2
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCchhhHHHHHHHHHHHHhcc
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~~~~~v~lit~Gv~lf~~ 157 (260)
||+-.+.+.|+.+.=.+..+|++++| +.+... +++= -++-|+.=.++
T Consensus 57 iP~~~~~~~~~~~~D~iIalG~VIkG--eT~H~e-~I~~-~v~~gl~~lsl 103 (150)
T d1kz1a_ 57 LPQGIRASIARNTYDAVIGIGVLIKG--STMHFE-YISE-AVVHGLMRVGL 103 (150)
T ss_dssp HHHHHHHHHHHSCCSEEEEEEEEECC--SSSHHH-HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccceEEEEEEEecC--cchHHH-HHHH-HHHHHHHHHhc
Confidence 44557778888899999999999965 655443 3332 23335544443
No 8
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=3.15 E-value=1.6e+02 Score=21.45 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=24.2
Q ss_pred cCchHHHHHhhccchheeehhhhccccccccCch
Q 024937 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAH 140 (260)
Q Consensus 107 Is~P~~il~KS~klipvMl~g~~l~g~~krY~~~ 140 (260)
+|+..+.+.|+.+.=.+..+|++++| +.+...
T Consensus 59 iP~~~~~l~~~~~~daiIaLG~VIkG--eT~H~e 90 (154)
T d1nqua_ 59 IPVAAGELARKEDIDAVIAIGVLIRG--ATPHFD 90 (154)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEEEECC--SSTHHH
T ss_pred hHHHHHHHHhhcCCCeEEEEEEEEeC--CchHHH
Confidence 55666778888888999999999965 555443
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.84 E-value=7.5e+02 Score=20.14 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHH
Q 024937 174 ISGALVMDSFLGNLQEV 190 (260)
Q Consensus 174 l~~sL~~dg~~~~~qe~ 190 (260)
+...++..+..|.+||.
T Consensus 94 I~~vv~~n~~i~~~qe~ 110 (472)
T d1wpga4 94 ILLILIANAIVGVWQER 110 (472)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhheeeeeeeEEeEEec
Confidence 34556788999999994
No 10
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.80 E-value=2.1e+02 Score=16.75 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=10.0
Q ss_pred ccccChHHHHhh
Q 024937 200 QVIKHPLQLAYE 211 (260)
Q Consensus 200 ~~~~~~~e~lf~ 211 (260)
+||.|||..|..
T Consensus 18 ~~G~~WNsILWs 29 (49)
T d1x58a1 18 TMGNHWNSILWS 29 (49)
T ss_dssp HHCSCHHHHHHH
T ss_pred Hhcchhhhhhhc
Confidence 689999988874
Done!