BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024938
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 148/241 (61%), Gaps = 14/241 (5%)
Query: 23 KWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQT-SSLDAD 81
KW S V E F+CNICLD +PV+TLCGHLYCWPCIYKW++ Q+ SS ++D
Sbjct: 23 KWK--SMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSD 80
Query: 82 EQQQNCPVCKANISVASLVPLYGRGGISSA-SDSKKPNLGEVVPSRPHPSALNTSVTSSS 140
+QQ CPVCKA +S +L+PLYGRGG S+ S+ K PNLG V+P RP PS
Sbjct: 81 QQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRP-PSPRCGGHFLLP 139
Query: 141 TSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLG 200
T+ + +Q L +Q Q+ P + GS+ + S GG AT + M+G
Sbjct: 140 TTDSNPSQLLQRRGYQQQSQTRQ-----PAYQGSYMSSPMLSPGG-ATANMLQ--HSMIG 191
Query: 201 GMTLERIFGGSTTSLFTYP-SQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLL 259
+ RIFG S+T+++TYP S +L +S++PR+RRQ + D+SL R+ FLFCC V CL+L
Sbjct: 192 EVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLIL 251
Query: 260 F 260
F
Sbjct: 252 F 252
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 146/253 (57%), Gaps = 31/253 (12%)
Query: 1 MEQNLF-EPETGYATEEDASLKQKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCG 59
ME N F + A + KQK + T+APT + F+CNICLD+A DPVVTLCG
Sbjct: 1 MEGNFFIRSDAQRAHDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCG 60
Query: 60 HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSAS---DSKK 116
HL+CWPCIYKWLHVQ SS+ D+ Q NCPVCK+NI++ SLVPLYGRG S +S K+
Sbjct: 61 HLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQ 120
Query: 117 PNLGEVVPSRPHPSALNTSVTSSST---STRHQTQQLHSDFFQSQAPAFHNPQYFPHHYG 173
L +P RP PSAL +TS+S+ S +HQT +P+FHN QY P +
Sbjct: 121 DALSTDIPRRPAPSALRNPITSASSLNPSLQHQT----------LSPSFHNHQYSPRGF- 169
Query: 174 SHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRR 233
S+ L +SF P++GM G + RIFG T ++ P QS +
Sbjct: 170 --TTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTI-AQPYQS----------Q 216
Query: 234 QEMELDKSLNRVS 246
+ M+ +KSLNRVS
Sbjct: 217 RMMQREKSLNRVS 229
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 20/241 (8%)
Query: 22 QKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQT-SSLDA 80
+K P + + D S F+CNICLDS Q+PVVTLCGHL+CWPCI+KWL VQ+ S+ D
Sbjct: 27 KKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDE 86
Query: 81 DEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSS 140
++ + CPVCK+ +S ++LVPLYGRG ++ + K VP RP + +S
Sbjct: 87 YQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSP 141
Query: 141 TSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLG 200
++ +D SQ F++PQ +Y ++S+SL A + +P+M M+G
Sbjct: 142 YAS--------TDLRLSQRVHFNSPQ--EGYYPVSGVMSSNSLSYSAVL---DPVMVMVG 188
Query: 201 GMTLERIFGGSTTSLFTYP-SQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLL 259
M R+FG F YP + +L ++ PR+RR+ M+ DKSL R+ F CC+VLCLLL
Sbjct: 189 EMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLL 248
Query: 260 F 260
F
Sbjct: 249 F 249
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 113/229 (49%), Gaps = 57/229 (24%)
Query: 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSS------LDADEQQQNCPVCK 91
G F+CNICLD +DPVVTLCGHL+CWPCI+KW + +S D + CPVCK
Sbjct: 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCK 75
Query: 92 ANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLH 151
+++S A+LVP+YGRG K P G VPSRP T R Q+L
Sbjct: 76 SDVSEATLVPIYGRG-------QKAPQSGSNVPSRP---------TGPVYDLRGVGQRLG 119
Query: 152 SDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGS 211
+SQ + P +P+MG++ M R+FG S
Sbjct: 120 EG--ESQRYMYRMP---------------------------DPVMGVVCEMVYRRLFGES 150
Query: 212 TTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF 260
++++ Y N R RR+ M+ ++SL+RV LFL C + +CL LF
Sbjct: 151 SSNMAPYRDM------NVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 25 SPTSAPTNVPEKDGSF-FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQ 83
+P+ PT+ KD S FECNICLD+A+D VV+LCGHL+CWPC+ +W LD
Sbjct: 7 APSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQW-------LDTRPN 59
Query: 84 QQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSAL 132
Q CPVCK+ I +VP+YGRGG SS K P + S P P +
Sbjct: 60 NQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKKVPPRPKGQRSEPPPQSF 108
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 14/94 (14%)
Query: 13 ATEEDASLKQKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLH 72
A EED + P G+ FECNICL++A++ VV++CGHLYCWPC+++WL
Sbjct: 4 AEEEDGGPE-------GPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLE 56
Query: 73 VQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 106
+ ++Q CPVCKA IS +VPLYGRG
Sbjct: 57 TRP-------ERQECPVCKAGISREKVVPLYGRG 83
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98
S FECNICLD+A+D V++LCGHL+CWPC+++WL + + +Q CPVCKA IS
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDK 87
Query: 99 LVPLYGRGGISSASDSKKPNLGEVVPSRPH 128
++PLYGRG +K P RP
Sbjct: 88 VIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98
S FECNICLD+A+D V++LCGHL+CWPC+++WL + + +Q CPVCKA IS
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDK 87
Query: 99 LVPLYGRGGISSASDSKKPNLGEVVPSRPH 128
++PLYGRG +K P RP
Sbjct: 88 VIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98
S FECNICLD+A+D V++LCGHL+CWPC+++WL + + +Q CPVCKA IS
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDK 87
Query: 99 LVPLYGRGGISSASDSKKPNLGEVVPSRPH 128
++PLYGRG +K P RP
Sbjct: 88 VIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98
S FECNICLD+A+D V++LCGHL+CWPC+++WL + + +Q CPVCKA IS
Sbjct: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDK 87
Query: 99 LVPLYGRGGISSASDSKKPNLGEVVPSRPH 128
++PLYGRG +K P RP
Sbjct: 88 VIPLYGRGSTGQQDPREK------TPPRPQ 111
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 13/88 (14%)
Query: 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100
FECNICLD+A+D V++LCGHL+CWPC+++WL + + +Q CPVCKA IS ++
Sbjct: 39 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVI 91
Query: 101 PLYGRGGISSASDSKKPNLGEVVPSRPH 128
PLYGRG +K P RP
Sbjct: 92 PLYGRGSTGQQDPREK------TPPRPQ 113
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 7/66 (10%)
Query: 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100
FECNICL++A++ VV++CGHLYCWPC+++WL + +Q CPVCKA IS +V
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPD-------RQECPVCKAGISREKVV 77
Query: 101 PLYGRG 106
PLYGRG
Sbjct: 78 PLYGRG 83
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 7/66 (10%)
Query: 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100
FECNICL++A++ VV++CGHLYCWPC+++WL + +Q CPVCKA IS +V
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPD-------RQECPVCKAGISREKVV 77
Query: 101 PLYGRG 106
PLYGRG
Sbjct: 78 PLYGRG 83
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
Query: 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98
S FECNICLD+++D V++LCGHL+CWPC+++WL + + +Q CPVCKA IS
Sbjct: 37 STFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDK 89
Query: 99 LVPLYGRGGISSASDSKKPNLGEVVPSRPH 128
++PLYGRG +K P RP
Sbjct: 90 VIPLYGRGSTGQQDPREK------TPPRPQ 113
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 42 ECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101
+C +CL+ T+CGHL+CW CI +W + ++ CPVC+ IS+ + VP
Sbjct: 321 KCTLCLEVRTHTTATICGHLFCWHCITEWCN----------NKEQCPVCRCPISIRTCVP 370
Query: 102 LYG 104
LY
Sbjct: 371 LYN 373
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 42 ECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101
+C +CL + Q P T CGH++CW CI +W + ++Q CP+C+ + +SLV
Sbjct: 326 KCTLCLSTRQHPTATPCGHVFCWSCIMEWCN----------EKQECPLCRTPNTHSSLVC 375
Query: 102 LY 103
LY
Sbjct: 376 LY 377
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102
C +CL +DP CGH++CW C+ W+ +++Q CP+C+A + + L+PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWV----------KERQECPLCRAKMRESQLLPL 294
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97
GS EC ICLDS PV+T C H++C PCI + +H +++ CP+C+ I
Sbjct: 749 GSDEECAICLDSLTFPVITHCAHVFCKPCICQVIH-------SEQPHAKCPLCRNEIHGD 801
Query: 98 SLV 100
+L+
Sbjct: 802 NLL 804
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96
D +F C IC +S +D + CGHL C C+ W H + Q CP C+ I
Sbjct: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHSDS---------QTCPFCRCEIKG 395
Query: 97 ASLVPLYGRGGISSASDS 114
V +Y G ++A DS
Sbjct: 396 WEAVSIYQFHGQATAEDS 413
>sp|Q5PPX5|RN170_XENLA E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2
SV=1
Length = 257
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102
C +CL A PV T CGHL+C CI + T L A NCP+C+ +++ L PL
Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGT-WLGAI----NCPICRQTVTL--LFPL 139
Query: 103 YGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHS 152
+G A + + G P +L + T RH +++ S
Sbjct: 140 FGATDQEDAQNILQEATGYNRRFSGQPRSLMDRIMDLPTLLRHAFREMFS 189
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97
GS EC ICLDS PV+T C H++C PCI + ++ CP+C+ +I
Sbjct: 755 GSDEECAICLDSLTVPVITHCAHVFCKPCI-------CQVIQNEQPHAKCPLCRNDIHED 807
Query: 98 SLV 100
+L+
Sbjct: 808 NLL 810
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97
GS EC ICLDS PV+T C H++C PCI + ++ CP+C+ +I
Sbjct: 752 GSDEECAICLDSLTVPVITHCAHVFCKPCI-------CQCIQNEQPHAKCPLCRNDIHGD 804
Query: 98 SLV 100
+L+
Sbjct: 805 NLL 807
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 29 APTNVPE--KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQN 86
A T +PE S C+IC D Q PV+T CGH +C CI ++L+ ++
Sbjct: 16 AGTTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLN----------KESR 65
Query: 87 CPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSA 131
CP+C A + L + G +++ + L E V P A
Sbjct: 66 CPLCLAELRQNMLQKEFLVGELAACYMELRARLLETVRIPPKKVA 110
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 25 SPTSAPTNVPEK-----------DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHV 73
+P S N P + DG+ EC ICL+SA DPV+T C H C C+
Sbjct: 1011 NPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRS 1070
Query: 74 QTSSLDADEQQQNCPVCKANISVASLV 100
+ L CP+C+ + L+
Sbjct: 1071 PSCGL--------CPICRTILKRTELI 1089
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102
C +CL+ + T CGHL+CW CI +W + +T CP+C+ LV L
Sbjct: 271 CTLCLEERRHSTATPCGHLFCWECITEWCNTKT----------ECPLCREKFPPQKLVYL 320
>sp|O74563|BRL2_SCHPO E3 ubiquitin-protein ligase brl2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl2 PE=1 SV=1
Length = 680
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 15 EEDASLKQKWSPTSAPTNVPEKD--GSFFECNIC-LDSAQDPVVTLCGHLYCWPCIYKWL 71
EE K+K T T+ E + +C++C + +D +++LCGH +C+ CI K +
Sbjct: 597 EEHEKEKRKLKDTGVSTSAEELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRI 656
Query: 72 HVQTSSLDADEQQQNCPVCKANISVASLVPLY 103
+Q+ CP+C + ++P++
Sbjct: 657 ET---------RQRRCPICGRGFGASDVIPIH 679
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI----SV 96
EC IC ++ Q P T CGH YC+ C+ WL ++ ++CP C+ + S
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWL----------KESKSCPTCRQKLYTQPSP 132
Query: 97 ASLVPLYGRGGISSASDSKKPNLG 120
A LV Y + +AS+S P +G
Sbjct: 133 AYLV--YEIMNVVAASNSGFPLVG 154
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 24 WSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQ 83
W PT P N+ E D S C IC + + PV+T C H +C CI ++L V +
Sbjct: 19 WEPTKLP-NLKELD-SLQRCYICKEFLKAPVITSCNHTFCSHCIREYLIVNS-------- 68
Query: 84 QQNCPVCKA 92
+CP+CKA
Sbjct: 69 --HCPLCKA 75
>sp|Q28DS3|RN170_XENTR E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170
PE=2 SV=1
Length = 257
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102
C +CL A PV T CGHL+C CI + S L A NCP+C+ +++ + PL
Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWR-YGSWLGAI----NCPICRQTVTL--IFPL 139
Query: 103 YGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHS 152
+ + + + +G P +L + T RH +++ S
Sbjct: 140 FQATEQEDSQNILREAIGYNRRFSGQPRSLMDRIMDLPTLLRHAFREMFS 189
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102
C +CL+ + P T CGHL+CW CI W + CP+C+ L+ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC----------SSKAECPLCREKFPPQKLIYL 322
>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1
SV=2
Length = 973
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 2 EQNLFEPETGYATEEDASLKQKWSPTSAPTNVPEKDGSFFE----------CNICLDSAQ 51
E++LF + A E+ + L++K T P NVP+ D E C C +
Sbjct: 871 EKDLFNFKR--AQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKK 928
Query: 52 DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92
D V+T C H++C+ C+ D +Q+ CP C A
Sbjct: 929 DAVLTKCFHVFCFECV---------KTRYDTRQRKCPKCNA 960
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102
C +CL+ + P T CGHL+CW CI W + CP+C+ L+ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC----------SSKAECPLCREKFPPQKLIYL 322
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP-------SQCPLCKNDITKRSL 73
>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1
SV=2
Length = 975
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 13 ATEEDASLKQKWSPTSAPTNVPEKDGSFFE----------CNICLDSAQDPVVTLCGHLY 62
A E+ + L++K T P NVP+ D E C C +D V+T C H++
Sbjct: 882 AQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVF 941
Query: 63 CWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92
C+ C+ D +Q+ CP C A
Sbjct: 942 CFECV---------KTRYDTRQRKCPKCNA 962
>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1
Length = 975
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 13 ATEEDASLKQKWSPTSAPTNVPEKDGSFFE----------CNICLDSAQDPVVTLCGHLY 62
A E+ + L++K T P NVP+ D E C C +D V+T C H++
Sbjct: 882 AQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVF 941
Query: 63 CWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92
C+ C+ D +Q+ CP C A
Sbjct: 942 CFECV---------KTRYDTRQRKCPKCNA 962
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 7 EPETGYATEEDASLKQKWSPTSAPTNVPEKDGSFFE---CNICLDSAQDPVVTLCGHLYC 63
E E A ++ + L+ +SA + ++ F E C C D ++ V+T C HL+C
Sbjct: 787 EEEMEIAKKKVSRLRSLIEGSSAIQKLRQELSEFKEILKCKACNDRPKEVVITKCYHLFC 846
Query: 64 WPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103
PC+ K +Q+ CP C A+ + P+Y
Sbjct: 847 NPCVQKL---------TGTRQKKCPTCSASFGPNDIKPIY 877
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP-------SQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP-------SQCPLCKNDITKRSL 73
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQ-TSSLDADEQQQNCPVCK 91
C+ICLD+ DPV CGH+YC+ C V L + E++ CP+C+
Sbjct: 217 CSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCR 266
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQ-TSSLDADEQQQNCPVCK 91
C+ICLD+ DPV CGH+YC+ C V L + E++ CP+C+
Sbjct: 217 CSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCR 266
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP-------SQCPLCKNDITKRSL 73
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGP-------SQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP-------SQCPLCKNDITKRSL 73
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99
EC ICL+ ++PV T C H++C C+ K L+ + CP+CK +I+ SL
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGP-------SQCPLCKNDITKRSL 73
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 20/92 (21%)
Query: 14 TEEDASLKQKWSPTSAPTNVPEK----------DGSFFECNICLDSAQDPVVTLCGHLYC 63
++ED + K S PT+ +K D S EC +C+ +PV T CGH +C
Sbjct: 387 SQEDTGMPNKASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFC 446
Query: 64 WPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95
C+ + L + CP+CK +S
Sbjct: 447 LKCLERCL----------DHNAKCPLCKDGLS 468
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101
C++CL+ ++PV+ CGH +C CI +W + E+ CPVC+ SL P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRW-------WEDLERDFPCPVCRKTSRYRSLRP 80
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101
C++CL+ ++PV+ CGH +C CI +W + E+ CPVC+ SL P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRW-------WEDLERDFPCPVCRKTSRYRSLRP 80
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101
C++CL+ ++PV+ CGH +C CI +W + E+ CPVC+ SL P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRW-------WEDLERDFPCPVCRKTSRYRSLRP 80
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101
C++CL+ ++PV+ CGH +C CI +W + E+ CPVC+ SL P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRW-------WEDLERDFPCPVCRKTSRYRSLRP 80
>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3
SV=2
Length = 259
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 21 KQKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDA 80
+Q + AP ++ + C ICL A PV T CGHL+C CI + S L A
Sbjct: 66 EQLQTEQDAPAAARQQFYTDMYCPICLHQASLPVETNCGHLFCGTCIVAYWRY-GSWLGA 124
Query: 81 DEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPS-RPHPSALNTSVTSS 139
+CP+C+ +++ L+P++G S S ++ + P ++ +
Sbjct: 125 ----ISCPICRQTVTL--LLPVFGENDQSQDVVSLHQDISDYNRRFSGQPRSIMERIMDL 178
Query: 140 STSTRHQTQQLHS 152
T RH +++ S
Sbjct: 179 PTLLRHAFREMFS 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,668,109
Number of Sequences: 539616
Number of extensions: 3719619
Number of successful extensions: 11837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 305
Number of HSP's that attempted gapping in prelim test: 11312
Number of HSP's gapped (non-prelim): 698
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)