Query 024938
Match_columns 260
No_of_seqs 245 out of 1603
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03208 E3 ubiquitin-protein 100.0 4.5E-50 9.6E-55 341.9 14.2 173 36-260 14-193 (193)
2 KOG0823 Predicted E3 ubiquitin 100.0 1.7E-37 3.7E-42 269.1 9.7 187 36-260 43-230 (230)
3 PF15227 zf-C3HC4_4: zinc fing 99.3 3.4E-12 7.4E-17 84.1 2.8 42 43-90 1-42 (42)
4 KOG0317 Predicted E3 ubiquitin 99.2 4.3E-12 9.3E-17 113.9 3.5 56 37-102 236-291 (293)
5 smart00504 Ubox Modified RING 99.2 1.6E-11 3.5E-16 86.7 4.2 55 40-104 1-55 (63)
6 KOG0320 Predicted E3 ubiquitin 99.1 2.2E-11 4.9E-16 102.5 3.2 59 36-104 127-187 (187)
7 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.3E-11 9.4E-16 77.3 2.4 38 43-90 1-39 (39)
8 KOG2164 Predicted E3 ubiquitin 99.1 4.5E-11 9.7E-16 114.5 2.6 81 17-107 168-248 (513)
9 TIGR00599 rad18 DNA repair pro 99.0 1.2E-10 2.6E-15 110.4 3.5 71 21-103 9-79 (397)
10 PF13639 zf-RING_2: Ring finge 99.0 9E-11 2E-15 77.6 1.8 40 42-91 2-44 (44)
11 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.7E-10 3.7E-15 78.4 2.8 47 39-95 1-48 (50)
12 PHA02929 N1R/p28-like protein; 99.0 2.2E-10 4.7E-15 101.9 4.0 50 36-95 170-227 (238)
13 PF04564 U-box: U-box domain; 99.0 2.2E-10 4.9E-15 84.0 2.9 58 38-104 2-59 (73)
14 PF00097 zf-C3HC4: Zinc finger 98.9 9.6E-10 2.1E-14 71.3 3.1 40 43-90 1-41 (41)
15 cd00162 RING RING-finger (Real 98.8 2.9E-09 6.2E-14 68.9 3.5 44 42-94 1-45 (45)
16 PHA02926 zinc finger-like prot 98.8 3.3E-09 7.2E-14 92.6 3.5 57 36-96 166-231 (242)
17 COG5574 PEX10 RING-finger-cont 98.8 3E-09 6.4E-14 94.7 2.6 53 38-99 213-266 (271)
18 PF13445 zf-RING_UBOX: RING-ty 98.8 4.3E-09 9.4E-14 69.6 2.5 31 43-74 1-35 (43)
19 KOG4628 Predicted E3 ubiquitin 98.7 2.2E-08 4.8E-13 93.2 7.1 47 41-96 230-279 (348)
20 smart00184 RING Ring finger. E 98.7 1.1E-08 2.4E-13 63.9 3.4 39 43-90 1-39 (39)
21 KOG0287 Postreplication repair 98.7 2.8E-09 6.1E-14 97.7 0.3 59 36-104 19-77 (442)
22 COG5243 HRD1 HRD ubiquitin lig 98.6 4.5E-08 9.8E-13 90.9 5.7 53 35-97 282-347 (491)
23 PF14634 zf-RING_5: zinc-RING 98.6 2.7E-08 5.8E-13 65.9 2.6 41 42-92 1-44 (44)
24 PF12678 zf-rbx1: RING-H2 zinc 98.6 4.5E-08 9.9E-13 71.9 3.0 40 42-91 21-73 (73)
25 COG5432 RAD18 RING-finger-cont 98.5 2.8E-08 6.1E-13 89.6 1.7 55 36-100 21-75 (391)
26 KOG2177 Predicted E3 ubiquitin 98.4 6.9E-08 1.5E-12 84.9 1.2 47 35-91 8-54 (386)
27 KOG0978 E3 ubiquitin ligase in 98.4 6.3E-08 1.4E-12 96.9 0.6 59 36-103 639-697 (698)
28 PF14835 zf-RING_6: zf-RING of 98.4 8.5E-08 1.8E-12 68.2 1.1 54 38-103 5-59 (65)
29 KOG0802 E3 ubiquitin ligase [P 98.3 4E-07 8.7E-12 90.2 3.0 51 37-97 288-343 (543)
30 COG5540 RING-finger-containing 98.3 4.9E-07 1.1E-11 82.1 3.1 48 39-95 322-372 (374)
31 PF12861 zf-Apc11: Anaphase-pr 98.2 1.7E-06 3.7E-11 65.1 3.6 50 40-96 21-83 (85)
32 TIGR00570 cdk7 CDK-activating 98.0 3.8E-06 8.2E-11 77.3 3.8 52 40-100 3-59 (309)
33 KOG4159 Predicted E3 ubiquitin 98.0 3.1E-06 6.7E-11 80.6 2.5 50 36-95 80-129 (398)
34 KOG0824 Predicted E3 ubiquitin 98.0 2.9E-06 6.2E-11 77.1 1.7 49 40-97 7-55 (324)
35 KOG1785 Tyrosine kinase negati 97.9 5.8E-06 1.3E-10 77.7 3.0 57 39-103 368-424 (563)
36 KOG0311 Predicted E3 ubiquitin 97.8 1.8E-06 4E-11 79.9 -2.7 51 36-95 39-90 (381)
37 COG5152 Uncharacterized conser 97.8 9.6E-06 2.1E-10 69.9 1.6 47 38-94 194-240 (259)
38 KOG2879 Predicted E3 ubiquitin 97.7 4.6E-05 1E-09 68.6 4.8 68 20-95 217-287 (298)
39 PF11793 FANCL_C: FANCL C-term 97.7 1.7E-05 3.7E-10 57.7 1.4 56 40-96 2-67 (70)
40 KOG4265 Predicted E3 ubiquitin 97.6 6.3E-05 1.4E-09 70.0 4.5 49 38-96 288-337 (349)
41 PF11789 zf-Nse: Zinc-finger o 97.6 3.8E-05 8.1E-10 53.8 2.3 45 37-89 8-53 (57)
42 KOG4172 Predicted E3 ubiquitin 97.6 1.3E-05 2.7E-10 55.3 -0.2 46 41-95 8-54 (62)
43 KOG1645 RING-finger-containing 97.6 2.8E-05 6.1E-10 73.3 1.8 59 39-105 3-66 (463)
44 KOG0297 TNF receptor-associate 97.5 4.3E-05 9.4E-10 72.9 2.2 55 37-101 18-73 (391)
45 KOG0804 Cytoplasmic Zn-finger 97.4 7.2E-05 1.6E-09 71.4 2.4 47 37-95 172-222 (493)
46 KOG1002 Nucleotide excision re 97.4 6.7E-05 1.4E-09 72.9 1.9 58 35-97 531-588 (791)
47 smart00744 RINGv The RING-vari 97.4 0.00017 3.7E-09 48.9 3.0 42 42-91 1-49 (49)
48 KOG0828 Predicted E3 ubiquitin 97.3 8.7E-05 1.9E-09 71.6 1.8 50 37-95 568-634 (636)
49 KOG1813 Predicted E3 ubiquitin 97.3 8E-05 1.7E-09 67.7 1.5 47 39-95 240-286 (313)
50 KOG1734 Predicted RING-contain 97.3 8.3E-05 1.8E-09 66.9 0.7 59 36-102 220-288 (328)
51 COG5222 Uncharacterized conser 97.2 6.1E-05 1.3E-09 68.6 -0.7 54 41-103 275-330 (427)
52 KOG1039 Predicted E3 ubiquitin 97.1 0.00025 5.5E-09 66.4 2.6 55 38-95 159-221 (344)
53 KOG2660 Locus-specific chromos 97.1 0.00013 2.9E-09 67.2 0.5 53 35-97 10-63 (331)
54 COG5194 APC11 Component of SCF 97.1 0.00038 8.2E-09 51.7 2.7 30 57-96 53-82 (88)
55 COG5219 Uncharacterized conser 97.1 0.00013 2.9E-09 74.9 0.5 52 36-95 1465-1523(1525)
56 KOG1493 Anaphase-promoting com 97.1 0.00011 2.3E-09 54.1 -0.3 32 57-95 50-81 (84)
57 PF07800 DUF1644: Protein of u 97.0 0.00083 1.8E-08 56.1 4.1 63 39-101 1-97 (162)
58 KOG3039 Uncharacterized conser 97.0 0.00072 1.6E-08 60.2 3.7 62 39-110 220-285 (303)
59 KOG4275 Predicted E3 ubiquitin 97.0 0.00016 3.6E-09 65.6 -0.4 42 40-95 300-342 (350)
60 KOG4692 Predicted E3 ubiquitin 97.0 0.00066 1.4E-08 63.3 3.5 51 36-96 418-468 (489)
61 KOG0825 PHD Zn-finger protein 97.0 0.00025 5.4E-09 71.7 0.7 72 18-99 97-175 (1134)
62 KOG1571 Predicted E3 ubiquitin 96.8 0.00068 1.5E-08 63.3 2.6 47 36-95 301-347 (355)
63 KOG3970 Predicted E3 ubiquitin 96.7 0.0068 1.5E-07 53.5 7.6 52 42-95 52-105 (299)
64 KOG0826 Predicted E3 ubiquitin 96.6 0.0013 2.8E-08 60.8 2.3 57 38-104 298-355 (357)
65 KOG0827 Predicted E3 ubiquitin 96.4 0.0017 3.8E-08 61.1 2.2 52 41-99 5-60 (465)
66 KOG1001 Helicase-like transcri 96.2 0.0013 2.9E-08 66.8 0.5 52 41-101 455-506 (674)
67 KOG4367 Predicted Zn-finger pr 96.1 0.011 2.4E-07 56.7 5.9 39 37-75 1-39 (699)
68 PF14447 Prok-RING_4: Prokaryo 96.0 0.0034 7.3E-08 43.5 1.4 48 39-98 6-53 (55)
69 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.012 2.6E-07 53.2 4.7 61 36-107 109-173 (260)
70 KOG2930 SCF ubiquitin ligase, 95.6 0.0066 1.4E-07 47.2 1.7 27 57-93 80-106 (114)
71 KOG4739 Uncharacterized protei 95.5 0.0053 1.2E-07 54.5 1.2 51 40-102 3-55 (233)
72 PF05290 Baculo_IE-1: Baculovi 95.4 0.011 2.4E-07 48.1 2.6 52 39-97 79-134 (140)
73 KOG1814 Predicted E3 ubiquitin 95.4 0.0036 7.9E-08 59.4 -0.5 78 21-100 165-247 (445)
74 KOG2817 Predicted E3 ubiquitin 95.0 0.026 5.6E-07 53.5 4.1 71 24-101 313-391 (394)
75 KOG4185 Predicted E3 ubiquitin 94.7 0.02 4.3E-07 52.2 2.3 46 40-94 3-54 (296)
76 PF14570 zf-RING_4: RING/Ubox 94.6 0.022 4.8E-07 38.5 1.7 43 43-94 1-47 (48)
77 KOG1941 Acetylcholine receptor 94.5 0.02 4.4E-07 54.3 2.0 48 39-94 364-415 (518)
78 COG5236 Uncharacterized conser 94.3 0.044 9.5E-07 51.3 3.7 52 35-94 56-107 (493)
79 KOG3002 Zn finger protein [Gen 93.9 0.038 8.3E-07 51.1 2.4 47 36-95 44-91 (299)
80 PHA03096 p28-like protein; Pro 93.7 0.034 7.3E-07 51.1 1.8 50 41-94 179-236 (284)
81 KOG4445 Uncharacterized conser 93.6 0.028 6.1E-07 51.6 1.1 60 36-96 111-187 (368)
82 KOG3161 Predicted E3 ubiquitin 93.5 0.021 4.5E-07 57.2 0.0 37 36-72 7-47 (861)
83 PF05883 Baculo_RING: Baculovi 93.4 0.027 5.8E-07 46.0 0.5 34 40-73 26-68 (134)
84 KOG0298 DEAD box-containing he 93.2 0.024 5.1E-07 60.6 -0.3 48 36-93 1149-1197(1394)
85 KOG3800 Predicted E3 ubiquitin 92.9 0.071 1.5E-06 48.7 2.5 46 42-96 2-52 (300)
86 KOG3039 Uncharacterized conser 92.8 0.092 2E-06 47.1 2.9 40 35-74 38-77 (303)
87 KOG4362 Transcriptional regula 92.5 0.028 6.1E-07 56.9 -0.7 53 37-96 18-70 (684)
88 PF10367 Vps39_2: Vacuolar sor 92.4 0.054 1.2E-06 41.4 0.9 33 37-69 75-109 (109)
89 KOG2114 Vacuolar assembly/sort 91.8 0.069 1.5E-06 55.0 1.1 43 39-94 839-882 (933)
90 KOG2932 E3 ubiquitin ligase in 91.7 0.082 1.8E-06 48.8 1.3 44 40-95 90-134 (389)
91 KOG1952 Transcription factor N 91.6 0.15 3.2E-06 52.7 3.2 55 38-95 189-247 (950)
92 KOG3268 Predicted E3 ubiquitin 91.5 0.12 2.6E-06 44.2 2.1 58 38-96 163-229 (234)
93 PHA02825 LAP/PHD finger-like p 91.2 0.24 5.2E-06 41.6 3.6 50 38-96 6-60 (162)
94 PF12906 RINGv: RING-variant d 91.2 0.14 3.1E-06 34.2 1.8 40 43-90 1-47 (47)
95 PF02891 zf-MIZ: MIZ/SP-RING z 90.9 0.19 4E-06 34.1 2.1 46 41-92 3-49 (50)
96 PF08746 zf-RING-like: RING-li 90.4 0.35 7.5E-06 31.7 3.0 40 43-90 1-43 (43)
97 PHA02862 5L protein; Provision 90.1 0.23 5E-06 41.1 2.4 47 41-96 3-54 (156)
98 PF10272 Tmpp129: Putative tra 89.4 0.27 5.8E-06 46.6 2.6 42 58-99 311-355 (358)
99 COG5109 Uncharacterized conser 89.1 0.29 6.4E-06 45.4 2.6 59 36-101 332-393 (396)
100 KOG1428 Inhibitor of type V ad 88.4 0.27 5.8E-06 53.7 2.1 59 38-96 3484-3545(3738)
101 COG5175 MOT2 Transcriptional r 87.9 0.35 7.5E-06 45.4 2.3 51 40-99 14-68 (480)
102 KOG3579 Predicted E3 ubiquitin 87.8 0.35 7.7E-06 44.2 2.2 56 38-94 266-327 (352)
103 KOG1812 Predicted E3 ubiquitin 87.5 0.33 7.1E-06 46.5 1.9 55 39-97 145-205 (384)
104 KOG1815 Predicted E3 ubiquitin 86.9 0.6 1.3E-05 45.4 3.4 65 38-104 68-135 (444)
105 KOG1100 Predicted E3 ubiquitin 82.7 0.52 1.1E-05 41.3 0.8 39 43-95 161-200 (207)
106 KOG1940 Zn-finger protein [Gen 82.7 0.63 1.4E-05 42.6 1.3 43 40-92 158-204 (276)
107 KOG3899 Uncharacterized conser 81.5 0.78 1.7E-05 42.2 1.5 42 58-99 325-369 (381)
108 COG5183 SSM4 Protein involved 79.2 1.8 4E-05 44.9 3.3 52 38-97 10-68 (1175)
109 CHL00038 psbL photosystem II p 78.6 1.8 3.8E-05 27.5 1.9 17 241-257 12-28 (38)
110 KOG3113 Uncharacterized conser 76.7 2.7 5.9E-05 38.0 3.3 55 38-104 109-167 (293)
111 COG5220 TFB3 Cdk activating ki 75.5 0.69 1.5E-05 41.5 -0.7 48 39-95 9-64 (314)
112 KOG3053 Uncharacterized conser 75.2 2.1 4.5E-05 38.8 2.2 58 35-94 15-81 (293)
113 PF03854 zf-P11: P-11 zinc fin 72.3 1.3 2.9E-05 29.8 0.2 32 55-96 15-47 (50)
114 TIGR01294 P_lamban phospholamb 70.7 7.6 0.00016 25.9 3.5 9 227-235 20-28 (52)
115 COG3813 Uncharacterized protei 66.7 5.4 0.00012 29.3 2.4 49 42-102 7-59 (84)
116 KOG2169 Zn-finger transcriptio 66.5 4.9 0.00011 41.0 3.0 57 36-98 302-359 (636)
117 PF14569 zf-UDP: Zinc-binding 65.6 9.5 0.00021 28.4 3.5 49 39-96 8-63 (80)
118 PRK00753 psbL photosystem II r 65.0 5.6 0.00012 25.4 1.9 20 241-260 13-33 (39)
119 PF06844 DUF1244: Protein of u 63.6 4.2 9E-05 29.3 1.3 14 61-74 11-24 (68)
120 KOG2034 Vacuolar sorting prote 62.9 4.1 8.8E-05 42.7 1.6 36 37-72 814-851 (911)
121 PF04216 FdhE: Protein involve 62.7 1.4 3E-05 40.4 -1.7 46 38-93 170-220 (290)
122 KOG0825 PHD Zn-finger protein 62.5 6.1 0.00013 41.1 2.7 54 39-96 95-155 (1134)
123 PF14446 Prok-RING_1: Prokaryo 60.9 8.1 0.00018 26.7 2.3 30 40-69 5-38 (54)
124 KOG1609 Protein involved in mR 59.7 9.4 0.0002 34.5 3.3 50 39-96 77-135 (323)
125 KOG1812 Predicted E3 ubiquitin 59.4 4.1 8.8E-05 39.0 0.8 35 40-74 306-345 (384)
126 TIGR01562 FdhE formate dehydro 58.6 2.5 5.5E-05 39.3 -0.7 46 38-93 182-233 (305)
127 PF07191 zinc-ribbons_6: zinc- 58.4 0.86 1.9E-05 33.2 -3.0 41 40-95 1-41 (70)
128 KOG4718 Non-SMC (structural ma 57.1 5.4 0.00012 35.2 1.1 44 39-92 180-224 (235)
129 PLN02436 cellulose synthase A 52.7 15 0.00032 39.7 3.7 49 39-96 35-90 (1094)
130 KOG1815 Predicted E3 ubiquitin 52.5 8.2 0.00018 37.5 1.7 22 50-71 176-197 (444)
131 PLN02189 cellulose synthase 52.3 15 0.00033 39.4 3.7 50 39-97 33-89 (1040)
132 PRK03564 formate dehydrogenase 51.9 6.3 0.00014 36.7 0.8 46 37-92 184-234 (309)
133 KOG0289 mRNA splicing factor [ 51.7 19 0.00041 35.1 3.9 57 41-107 1-58 (506)
134 KOG0309 Conserved WD40 repeat- 51.3 8.3 0.00018 40.0 1.5 35 41-75 1029-1065(1081)
135 PF04272 Phospholamban: Phosph 51.0 29 0.00064 23.1 3.6 11 249-259 34-44 (52)
136 PF10497 zf-4CXXC_R1: Zinc-fin 50.8 13 0.00029 29.0 2.3 35 59-94 37-71 (105)
137 PF06906 DUF1272: Protein of u 50.6 15 0.00032 25.6 2.3 44 42-97 7-54 (57)
138 PF05605 zf-Di19: Drought indu 50.3 7.7 0.00017 26.2 0.8 13 39-51 1-13 (54)
139 KOG2231 Predicted E3 ubiquitin 49.7 13 0.00028 38.1 2.6 51 42-96 2-53 (669)
140 PF02419 PsbL: PsbL protein; 46.7 9.7 0.00021 24.1 0.8 18 240-257 10-27 (37)
141 KOG4185 Predicted E3 ubiquitin 46.4 3.7 8E-05 37.3 -1.7 46 39-93 206-265 (296)
142 KOG0802 E3 ubiquitin ligase [P 46.3 17 0.00037 36.3 2.9 46 38-97 477-522 (543)
143 PF06716 DUF1201: Protein of u 46.2 13 0.00029 24.9 1.4 12 247-258 14-25 (54)
144 PF03908 Sec20: Sec20; InterP 46.1 33 0.00072 25.7 3.9 23 237-259 67-89 (92)
145 KOG0827 Predicted E3 ubiquitin 45.2 6.7 0.00015 37.6 -0.1 46 41-96 197-246 (465)
146 KOG2068 MOT2 transcription fac 44.2 29 0.00063 32.6 3.8 45 40-94 249-297 (327)
147 PF10235 Cript: Microtubule-as 43.7 14 0.00029 28.3 1.3 37 40-95 44-80 (90)
148 PRK15178 Vi polysaccharide exp 43.4 26 0.00056 34.2 3.5 27 232-258 71-97 (434)
149 smart00647 IBR In Between Ring 43.3 4.7 0.0001 27.5 -1.1 15 57-71 45-59 (64)
150 KOG2462 C2H2-type Zn-finger pr 42.6 17 0.00036 33.3 2.0 59 38-96 159-227 (279)
151 PF04710 Pellino: Pellino; In 42.2 8.4 0.00018 37.0 0.0 49 40-95 277-339 (416)
152 PLN02638 cellulose synthase A 40.1 31 0.00067 37.3 3.7 49 39-96 16-71 (1079)
153 PLN02400 cellulose synthase 38.8 26 0.00057 37.9 3.0 50 39-97 35-91 (1085)
154 KOG3799 Rab3 effector RIM1 and 38.7 32 0.00069 28.4 2.8 28 37-69 62-90 (169)
155 PF10571 UPF0547: Uncharacteri 38.5 16 0.00035 21.3 0.8 8 43-50 3-10 (26)
156 PLN02195 cellulose synthase A 38.0 33 0.00072 36.7 3.6 48 39-95 5-59 (977)
157 COG3492 Uncharacterized protei 36.8 16 0.00035 28.0 0.8 14 61-74 42-55 (104)
158 PLN02915 cellulose synthase A 35.4 39 0.00084 36.5 3.6 49 39-96 14-69 (1044)
159 KOG2979 Protein involved in DN 34.4 20 0.00042 32.6 1.1 43 40-90 176-219 (262)
160 COG4306 Uncharacterized protei 33.9 39 0.00084 27.6 2.6 28 61-101 29-56 (160)
161 KOG0801 Predicted E3 ubiquitin 33.3 15 0.00032 31.3 0.1 25 39-63 176-203 (205)
162 PF12132 DUF3587: Protein of u 32.7 28 0.00061 30.4 1.7 24 50-73 151-178 (199)
163 KOG1829 Uncharacterized conser 31.2 17 0.00037 36.7 0.2 40 39-91 510-557 (580)
164 PF08525 OapA_N: Opacity-assoc 31.0 68 0.0015 19.2 2.7 19 242-260 9-27 (30)
165 PF10215 Ost4: Oligosaccaryltr 30.6 35 0.00076 21.5 1.4 22 238-259 3-24 (35)
166 PF05393 Hum_adeno_E3A: Human 30.3 41 0.0009 25.6 2.1 14 245-258 35-48 (94)
167 COG4098 comFA Superfamily II D 29.7 25 0.00053 33.7 1.0 33 36-68 35-68 (441)
168 PHA02849 putative transmembran 29.6 41 0.00089 25.0 1.9 16 245-260 20-35 (82)
169 PF01485 IBR: IBR domain; Int 29.2 8.3 0.00018 26.2 -1.8 30 41-70 19-58 (64)
170 COG0068 HypF Hydrogenase matur 28.5 44 0.00094 34.7 2.5 55 38-94 99-183 (750)
171 PF05399 EVI2A: Ectropic viral 28.2 40 0.00087 29.8 1.9 16 245-260 133-148 (227)
172 KOG2807 RNA polymerase II tran 28.0 46 0.001 31.4 2.4 40 42-91 332-374 (378)
173 smart00132 LIM Zinc-binding do 27.9 40 0.00087 20.0 1.4 24 43-66 2-27 (39)
174 PF07092 DUF1356: Protein of u 27.9 11 0.00023 33.9 -1.7 16 244-259 73-88 (238)
175 KOG0269 WD40 repeat-containing 27.8 52 0.0011 34.3 2.9 34 42-75 781-816 (839)
176 PHA02975 hypothetical protein; 27.7 44 0.00095 24.2 1.7 21 240-260 40-60 (69)
177 PF01363 FYVE: FYVE zinc finge 26.9 14 0.00031 25.9 -0.9 34 39-72 8-45 (69)
178 COG4647 AcxC Acetone carboxyla 26.7 32 0.00069 28.2 1.0 21 45-65 62-82 (165)
179 KOG4218 Nuclear hormone recept 26.5 51 0.0011 31.4 2.4 14 39-52 14-27 (475)
180 PHA02657 hypothetical protein; 26.4 60 0.0013 24.6 2.3 19 241-259 26-44 (95)
181 COG5574 PEX10 RING-finger-cont 26.1 57 0.0012 29.8 2.6 38 35-72 90-132 (271)
182 COG3058 FdhE Uncharacterized p 26.0 69 0.0015 29.6 3.1 46 38-93 183-234 (308)
183 PHA02844 putative transmembran 25.3 53 0.0012 24.2 1.8 14 245-258 49-62 (75)
184 KOG0824 Predicted E3 ubiquitin 25.3 27 0.00059 32.5 0.4 48 38-95 103-151 (324)
185 PF15616 TerY-C: TerY-C metal 24.4 40 0.00086 27.6 1.1 48 33-96 70-117 (131)
186 COG5242 TFB4 RNA polymerase II 23.7 33 0.00071 30.8 0.6 15 39-53 259-273 (296)
187 PF07280 DUF1443: Protein of u 23.3 66 0.0014 21.2 1.8 14 245-258 4-17 (43)
188 cd00065 FYVE FYVE domain; Zinc 23.3 54 0.0012 21.8 1.5 32 41-72 3-38 (57)
189 MTH00186 ATP8 ATP synthase F0 22.9 63 0.0014 21.6 1.7 14 246-259 9-22 (52)
190 smart00064 FYVE Protein presen 22.8 72 0.0016 22.1 2.1 34 40-73 10-47 (68)
191 PHA02898 virion envelope prote 22.5 88 0.0019 23.9 2.6 23 238-260 43-65 (92)
192 PF13901 DUF4206: Domain of un 22.4 43 0.00092 29.1 1.1 39 39-92 151-197 (202)
193 MTH00158 ATP8 ATP synthase F0 22.4 71 0.0015 19.4 1.7 14 246-259 9-22 (32)
194 KOG2113 Predicted RNA binding 22.0 86 0.0019 29.5 2.9 46 37-94 340-386 (394)
195 PF08114 PMP1_2: ATPase proteo 21.9 77 0.0017 20.7 1.9 15 245-259 15-29 (43)
196 PF04423 Rad50_zn_hook: Rad50 21.9 25 0.00054 23.7 -0.4 12 86-97 22-33 (54)
197 KOG3005 GIY-YIG type nuclease 21.5 35 0.00076 31.2 0.4 60 41-101 183-249 (276)
198 KOG3476 Microtubule-associated 21.5 15 0.00034 27.8 -1.6 38 40-96 54-91 (100)
199 PF00412 LIM: LIM domain; Int 21.5 82 0.0018 20.7 2.2 32 38-69 24-56 (58)
200 KOG3842 Adaptor protein Pellin 21.0 1.1E+02 0.0024 28.9 3.4 58 37-95 338-414 (429)
201 PF10186 Atg14: UV radiation r 20.9 62 0.0013 28.8 1.8 22 42-71 1-22 (302)
202 PF10146 zf-C4H2: Zinc finger- 20.9 59 0.0013 29.0 1.7 25 62-96 196-220 (230)
203 KOG1356 Putative transcription 20.9 29 0.00063 36.5 -0.3 32 40-71 229-262 (889)
204 smart00734 ZnF_Rad18 Rad18-lik 20.6 41 0.0009 19.4 0.4 12 86-97 3-14 (26)
205 PF10083 DUF2321: Uncharacteri 20.6 73 0.0016 26.8 2.0 29 59-100 27-55 (158)
206 KOG1814 Predicted E3 ubiquitin 20.6 43 0.00094 32.5 0.8 33 39-71 367-405 (445)
207 PF15012 DUF4519: Domain of un 20.5 89 0.0019 21.8 2.1 30 230-259 17-47 (56)
208 PRK06870 secG preprotein trans 20.2 1.1E+02 0.0025 22.1 2.8 19 238-256 48-66 (76)
209 PF11809 DUF3330: Domain of un 20.2 1.2E+02 0.0026 22.0 2.7 36 39-74 10-51 (70)
210 PRK10299 PhoPQ regulatory prot 20.0 65 0.0014 21.6 1.3 12 247-258 7-18 (47)
No 1
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=100.00 E-value=4.5e-50 Score=341.85 Aligned_cols=173 Identities=45% Similarity=0.930 Sum_probs=139.3
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCcc-------ccccCcCCCCcccccccccccccccCCCC
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLD-------ADEQQQNCPVCKANISVASLVPLYGRGGI 108 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~-------~~~~~~~CPvCr~~v~~~~l~p~~~~~~~ 108 (260)
+..+.++|+||++.+.+|++|+|||.|||.||.+|+...+.+.+ ..+.. .||+||..+...+++|+|+++..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~-~CPvCR~~Is~~~LvPiygrg~~ 92 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPP-KCPVCKSDVSEATLVPIYGRGQK 92 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCC-cCCCCCCcCChhcEEEeeccCCC
Confidence 44567999999999999999999999999999999986433221 11234 89999999999999999999874
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCCCCCCCCCCCCccccccCCCCccc
Q 024938 109 SSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMAT 188 (260)
Q Consensus 109 ~~~~~~~~~~~~~~ip~RP~~~~~~~~~~~~s~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (260)
. .+.+..+|+||.+++.+. ++.++++. ++ +++.|. +
T Consensus 93 ~-------~~~~~~iP~rp~~~~~~~---------~~~~~~~~------~~---~~~~~~-------------------~ 128 (193)
T PLN03208 93 A-------PQSGSNVPSRPSGPVYDL---------RGVGQRLG------EG---ESQRYM-------------------Y 128 (193)
T ss_pred C-------CCCCCCCCcCCCCCccCC---------CCcccccc------cc---ccceee-------------------e
Confidence 3 344566999998876552 22223331 11 111111 1
Q ss_pred hhcccccccccccceeecccCCCCCCCCCCCCCCCCCCCChhhHhHHhHHHHHhHHHHHHHHHHHHHHHhhC
Q 024938 189 ISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF 260 (260)
Q Consensus 189 ~~~~~~~~g~f~~~v~~~~fg~~~~~~~~~~~~~~~~~~~pr~r~~~~~~~~~l~ri~~fl~~~~~lcll~f 260 (260)
++++|++||||||||+||||++.+|+|+|||+ +||||||+||+|||||||+|||||||+||||||
T Consensus 129 -~~~~p~~g~~~~~~~~r~fg~~~~~~~~~~~~------~~r~r~~~~q~~~sl~r~~~f~~c~~~~~~~~f 193 (193)
T PLN03208 129 -RMPDPVMGVVCEMVYRRLFGESSSNMAPYRDM------NVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193 (193)
T ss_pred -ccCCccccchhhhhhhhhhCCccccccccccC------chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC
Confidence 37889999999999999999999999999996 899999999999999999999999999999998
No 2
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=269.07 Aligned_cols=187 Identities=38% Similarity=0.736 Sum_probs=137.9
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCCCCCCCCCCC
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSK 115 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~~~~~~~~ 115 (260)
.....|+|+||||..+|||+|.|||+|||+||++|++.+. ..+ .|||||+.|+.++++|+|++|....+.+++
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~------~~~-~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~ 115 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP------NSK-ECPVCKAEVSIDTVVPLYGRGSKKPSDPRK 115 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC------CCe-eCCccccccccceEEeeeccCCCCCCCccc
Confidence 3567899999999999999999999999999999999876 335 899999999999999999999977666655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCCCCCCCCCCCCc-cccccCCCCccchhcccc
Q 024938 116 KPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHA-ALASSSLGGMATISFFNP 194 (260)
Q Consensus 116 ~~~~~~~ip~RP~~~~~~~~~~~~s~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ 194 (260)
+. +|+||.++|.++.+.+...+.. +..+++. ...+-++ ..-|.+.|....+ .+
T Consensus 116 ~~-----vP~RP~~~R~e~~~p~~~~~~~-----------------~g~r~~g-~~~~~~~~~~f~~s~~i~~~~---~~ 169 (230)
T KOG0823|consen 116 KD-----VPPRPAGQRYESKRPTPQNRGN-----------------HGFRFFG-FRLGEESSNRFMYSFGIGLFG---DP 169 (230)
T ss_pred cc-----CCCCCCCccccccCCCCccccc-----------------ccccccc-ccccccCCcceeEEeecccCC---Cc
Confidence 54 8999999998876555211110 0111100 0000001 1112223322211 68
Q ss_pred cccccccceeecccCCCCCCCCCCCCCCCCCCCChhhHhHHhHHHHHhHHHHHHHHHHHHHHHhhC
Q 024938 195 LMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF 260 (260)
Q Consensus 195 ~~g~f~~~v~~~~fg~~~~~~~~~~~~~~~~~~~pr~r~~~~~~~~~l~ri~~fl~~~~~lcll~f 260 (260)
|+|||++++++++||+.++.+ + .++ +...+|.++++||.|++|+|+.+|++|++++||+++
T Consensus 170 v~~~~p~~~~~~lf~~~~~~~-~--~~~--~~~~~~~~~r~~q~e~~ls~~f~~~~~~~~~~l~~~ 230 (230)
T KOG0823|consen 170 VMGLFPFGLYTRLFGTDETFP-A--DTP--RPSPARPLGRQMQRENSLSRVFLFLACFFVSWLLVI 230 (230)
T ss_pred eeeeccccceeeecCCCCCcc-c--cCC--CCCCCccccccchhhcccccchhhhhhhheeeeeeC
Confidence 999999999999999998755 2 111 224578888889999999999999999999999875
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.25 E-value=3.4e-12 Score=84.07 Aligned_cols=42 Identities=38% Similarity=0.941 Sum_probs=32.0
Q ss_pred ccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 43 C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
|+||++.+.+||.++|||.||..||.+|.+... ...+.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~------~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS------GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS------SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC------CcCCCCcCC
Confidence 899999999999999999999999999997543 221489987
No 4
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.3e-12 Score=113.94 Aligned_cols=56 Identities=30% Similarity=1.006 Sum_probs=49.4
Q ss_pred CCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~ 102 (260)
.+....|.+|++...+|.-|+|||+|||.||..|...+. .||+||..+...+++-+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~----------eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA----------ECPLCREKFQPSKVICL 291 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc----------CCCcccccCCCcceeee
Confidence 445689999999999999999999999999999998764 89999999988776543
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.20 E-value=1.6e-11 Score=86.69 Aligned_cols=55 Identities=31% Similarity=0.526 Sum_probs=49.2
Q ss_pred cccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
++.|+||.+.+.+||+++|||.||..||.+|+..+ . .||+|+..+..++++++..
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~---------~-~cP~~~~~~~~~~l~~~~~ 55 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH---------G-TDPVTGQPLTHEDLIPNLA 55 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC---------C-CCCCCcCCCChhhceeCHH
Confidence 46899999999999999999999999999999863 4 8999999998888887753
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.2e-11 Score=102.49 Aligned_cols=59 Identities=36% Similarity=0.863 Sum_probs=50.5
Q ss_pred CCCCcccccccccCCCC--cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQD--PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~--Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.-++.+.|||||+.+.+ |+.|.|||+||..||+..++.. . .||+|++.|..+.+.++|.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~---------~-~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT---------N-KCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHhC---------C-CCCCcccccchhhheeccC
Confidence 34567999999999876 5669999999999999999876 4 9999999999988888763
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=4.3e-11 Score=77.29 Aligned_cols=38 Identities=58% Similarity=1.290 Sum_probs=32.8
Q ss_pred ccccccCCCCc-EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 43 CNICLDSAQDP-VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 43 C~ICld~~~~P-vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
|+||++.+.+| ++++|||.||+.||.+|++.+ . .||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~---------~-~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN---------P-KCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT---------S-B-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc---------C-CCcCC
Confidence 89999999999 579999999999999999863 4 99988
No 8
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.5e-11 Score=114.54 Aligned_cols=81 Identities=27% Similarity=0.713 Sum_probs=65.2
Q ss_pred chhHhhhcCCCCCCCCCCCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 17 DASLKQKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 17 ~~~~~~~wk~~~~~~~~~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.+....|+.+....... ...||||++...-|+.|.|||+||++||..++... .....+ .||+|+..|..
T Consensus 168 dpD~p~~~e~i~qv~~~t-----~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s----~~~~~~-~CPiC~s~I~~ 237 (513)
T KOG2164|consen 168 DPDAPVDWEDIFQVYGST-----DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS----AIKGPC-SCPICRSTITL 237 (513)
T ss_pred CCccccchHHhhhhhcCc-----CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh----cccCCc-cCCchhhhccc
Confidence 455566676666554322 78999999999999999999999999999988754 123345 99999999999
Q ss_pred ccccccccCCC
Q 024938 97 ASLVPLYGRGG 107 (260)
Q Consensus 97 ~~l~p~~~~~~ 107 (260)
+++.+.+.+.+
T Consensus 238 kdl~pv~~e~~ 248 (513)
T KOG2164|consen 238 KDLLPVFIEDD 248 (513)
T ss_pred cceeeeeeccc
Confidence 99999998876
No 9
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=1.2e-10 Score=110.38 Aligned_cols=71 Identities=31% Similarity=0.649 Sum_probs=56.3
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 21 KQKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 21 ~~~wk~~~~~~~~~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
.-.|....... .+.++..+.|+||++.+.+|++++|||.||..||..|+... . .||+|+..+....+.
T Consensus 9 ~tDw~~t~~~~--l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~---------~-~CP~Cr~~~~~~~Lr 76 (397)
T TIGR00599 9 SSDWLTTPIPS--LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ---------P-KCPLCRAEDQESKLR 76 (397)
T ss_pred chhhccCCccc--ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC---------C-CCCCCCCccccccCc
Confidence 34565554322 35677889999999999999999999999999999999754 3 899999998765555
Q ss_pred ccc
Q 024938 101 PLY 103 (260)
Q Consensus 101 p~~ 103 (260)
.++
T Consensus 77 ~N~ 79 (397)
T TIGR00599 77 SNW 79 (397)
T ss_pred cch
Confidence 444
No 10
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.03 E-value=9e-11 Score=77.63 Aligned_cols=40 Identities=43% Similarity=1.096 Sum_probs=34.1
Q ss_pred cccccccCCC---CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 42 ECNICLDSAQ---DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 42 ~C~ICld~~~---~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
+|+||++.+. ..+.++|||.||..||.+|++.+ . +||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---------~-~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---------N-SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---------S-B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---------C-cCCccC
Confidence 6999999984 45678999999999999999865 4 999997
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.02 E-value=1.7e-10 Score=78.39 Aligned_cols=47 Identities=36% Similarity=0.916 Sum_probs=40.1
Q ss_pred CcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
++..|.||++...+.+.++|||. ||..|+.+|++.. + .||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~-~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRK---------K-KCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTT---------S-BBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccC---------C-CCCcCChhhc
Confidence 35789999999999999999999 9999999999844 4 9999999875
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.01 E-value=2.2e-10 Score=101.90 Aligned_cols=50 Identities=30% Similarity=0.858 Sum_probs=41.4
Q ss_pred CCCCcccccccccCCCCc--------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQDP--------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~P--------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....+.+|+||++.+.++ ++++|+|.||..||.+|+..+ . +||+||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~---------~-tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK---------N-TCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC---------C-CCCCCCCEee
Confidence 345578999999987653 556899999999999999865 3 9999999875
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.99 E-value=2.2e-10 Score=84.04 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=46.5
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.+.|.|+|+.+.+.+||+++|||+|+..||.+|+.... . .||+|+..+...+++++..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~--------~-~~P~t~~~l~~~~l~pn~~ 59 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNG--------G-TDPFTRQPLSESDLIPNRA 59 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTS--------S-B-TTT-SB-SGGGSEE-HH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCC--------C-CCCCCCCcCCcccceECHH
Confidence 36799999999999999999999999999999999632 5 9999999999999988764
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.91 E-value=9.6e-10 Score=71.35 Aligned_cols=40 Identities=45% Similarity=1.214 Sum_probs=35.4
Q ss_pred ccccccCCCCcE-EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 43 CNICLDSAQDPV-VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 43 C~ICld~~~~Pv-vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
|+||++.+.+++ +++|||.||..||.+|++... .. .||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~-------~~-~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSG-------SV-KCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTS-------SS-BTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcC-------Cc-cCCcC
Confidence 899999999999 899999999999999999532 24 89988
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.84 E-value=2.9e-09 Score=68.93 Aligned_cols=44 Identities=50% Similarity=1.284 Sum_probs=36.9
Q ss_pred cccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 42 ECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+|+||++.+.+++.+. |||.||..|+.+|+.... . .||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~--------~-~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK--------N-TCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCc--------C-CCCCCCCcC
Confidence 5999999998777665 999999999999998622 4 899998753
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.79 E-value=3.3e-09 Score=92.55 Aligned_cols=57 Identities=25% Similarity=0.764 Sum_probs=43.3
Q ss_pred CCCCcccccccccCCCC---------cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQD---------PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~---------Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+.+.+|+||+|...+ ++..+|+|.||..||.+|.+.+. +.+..+ .||+||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~---~~~~~r-sCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR---ETGASD-NCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc---ccCcCC-cCCCCcceeee
Confidence 45567899999998643 35568999999999999998542 122335 89999998763
No 17
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3e-09 Score=94.74 Aligned_cols=53 Identities=30% Similarity=0.879 Sum_probs=46.3
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHH-hhhhhcCCccccccCcCCCCcccccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYK-WLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~-wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
..++.|.||++....|..++|||+|||.||.. |-..+. . .||+||+.+..+++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~--------~-~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY--------E-FCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhcc--------c-cCchhhhhccchhh
Confidence 45789999999999999999999999999999 887653 2 59999999887665
No 18
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.76 E-value=4.3e-09 Score=69.58 Aligned_cols=31 Identities=35% Similarity=0.903 Sum_probs=21.8
Q ss_pred ccccccCCCC----cEEccCCCccCHHHHHHhhhhh
Q 024938 43 CNICLDSAQD----PVVTLCGHLYCWPCIYKWLHVQ 74 (260)
Q Consensus 43 C~ICld~~~~----Pvvt~CGH~fC~~Ci~~wl~~~ 74 (260)
|+||.+ +.+ |++|+|||+||..||.++++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 777 9999999999999999999854
No 19
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.2e-08 Score=93.16 Aligned_cols=47 Identities=34% Similarity=0.786 Sum_probs=39.9
Q ss_pred ccccccccCCCCc---EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 41 FECNICLDSAQDP---VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 41 ~~C~ICld~~~~P---vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..|.||+|.+.+. ++|+|.|.||..||..||... +..||+||..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---------r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---------RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---------CccCCCCCCcCCC
Confidence 7999999999864 568999999999999999864 3269999997643
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.72 E-value=1.1e-08 Score=63.86 Aligned_cols=39 Identities=51% Similarity=1.334 Sum_probs=34.3
Q ss_pred ccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 43 CNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 43 C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
|+||++...++++++|||.||..|+.+|++.. .. .||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~-~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--------NN-TCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--------cC-CCCCC
Confidence 89999999999999999999999999999832 24 79987
No 21
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.70 E-value=2.8e-09 Score=97.74 Aligned_cols=59 Identities=27% Similarity=0.654 Sum_probs=52.1
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.+...+.|-||.++|..|++++|+|.||.-||..+|..+ + .||.|+..+.+..++.++.
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~---------p-~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK---------P-QCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC---------C-CCCceecccchhhhhhhhH
Confidence 456778999999999999999999999999999999976 4 9999999998877766553
No 22
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.5e-08 Score=90.90 Aligned_cols=53 Identities=32% Similarity=0.786 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCC-CC------------cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 35 EKDGSFFECNICLDSA-QD------------PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~-~~------------Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
.-.+++-.|.||+|.+ +. |..++|||.++..|++.|++.+ . +||+||.++.-+
T Consensus 282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---------Q-TCPICr~p~ifd 347 (491)
T COG5243 282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---------Q-TCPICRRPVIFD 347 (491)
T ss_pred hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---------c-CCCcccCccccc
Confidence 3456788999999984 32 4788999999999999999976 3 999999996433
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=2.7e-08 Score=65.88 Aligned_cols=41 Identities=37% Similarity=1.027 Sum_probs=33.9
Q ss_pred cccccccCC---CCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 42 ECNICLDSA---QDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 42 ~C~ICld~~---~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
.|+||.+.+ ..+++|.|||+||..|+.++... .. .||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~---------~~-~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK---------SV-KCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC---------CC-CCcCCCC
Confidence 499999998 35788999999999999998821 24 9999974
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.56 E-value=4.5e-08 Score=71.87 Aligned_cols=40 Identities=40% Similarity=1.176 Sum_probs=32.2
Q ss_pred cccccccCCCCc-------------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 42 ECNICLDSAQDP-------------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 42 ~C~ICld~~~~P-------------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
.|.||++.+.++ +...|||.|+..||.+|++.+ . +||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---------~-~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---------N-TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---------S-B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---------C-cCCCCC
Confidence 499999999432 334799999999999999865 3 999997
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.53 E-value=2.8e-08 Score=89.63 Aligned_cols=55 Identities=35% Similarity=0.681 Sum_probs=47.3
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
.+..-+.|-||.+.+..|+.|+|||.||.-||.+.|..+ + -||+||.+..+..+.
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q---------p-~CP~Cr~~~~esrlr 75 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ---------P-FCPVCREDPCESRLR 75 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCC---------C-CCccccccHHhhhcc
Confidence 345568999999999999999999999999999999876 4 999999987654443
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6.9e-08 Score=84.88 Aligned_cols=47 Identities=34% Similarity=0.849 Sum_probs=41.5
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
....+.+.|+||++.+.+|++++|||.||..||..++. . ...||.||
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~---------~~~Cp~cr 54 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G---------PLSCPVCR 54 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-C---------CcCCcccC
Confidence 35567899999999999998899999999999999987 2 23999999
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.3e-08 Score=96.92 Aligned_cols=59 Identities=24% Similarity=0.693 Sum_probs=53.7
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
.+.+-+.|++|.+.+.+.|++.|||.||..|+.+.+.... + +||.|...+...++.++|
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq--------R-KCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ--------R-KCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc--------C-CCCCCCCCCCcccccccC
Confidence 5667899999999999999999999999999999998753 6 999999999999998876
No 28
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.40 E-value=8.5e-08 Score=68.25 Aligned_cols=54 Identities=28% Similarity=0.750 Sum_probs=28.5
Q ss_pred CCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 38 GSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
++.+.|++|.+.+.+||. ..|.|.||+.||..-+. . .||+|..+....+++.|.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----------~-~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----------S-ECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----------T-B-SSS--B-S-SS----H
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----------C-CCCCcCChHHHHHHHhhh
Confidence 356789999999999985 68999999999977554 3 799999988777766543
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4e-07 Score=90.17 Aligned_cols=51 Identities=29% Similarity=0.667 Sum_probs=44.0
Q ss_pred CCCcccccccccCCCC-----cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 37 DGSFFECNICLDSAQD-----PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~-----Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
......|.||.|.+.. |..++|||.||..|+++|++.++ .||.||..+...
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q----------tCP~CR~~~~~~ 343 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ----------TCPTCRTVLYDY 343 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC----------cCCcchhhhhcc
Confidence 3457899999999988 78999999999999999999864 999999955433
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.9e-07 Score=82.13 Aligned_cols=48 Identities=33% Similarity=0.743 Sum_probs=39.5
Q ss_pred CcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...+|.||++.+.. =++|+|.|.|+..|+.+|+..-+ . +||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~--------~-~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS--------N-KCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc--------c-cCCccCCCCC
Confidence 34899999998864 36799999999999999998332 3 9999998764
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.17 E-value=1.7e-06 Score=65.10 Aligned_cols=50 Identities=34% Similarity=0.755 Sum_probs=35.9
Q ss_pred cccccccccCCC-----------C-cEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQ-----------D-PVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~-----------~-Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+..|.||...+. + |++. .|+|.|+..||.+|+..++ ... .||+||+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~------~~~-~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS------SKG-QCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc------CCC-CCCCcCCeeee
Confidence 445666665553 2 4443 6999999999999999753 235 99999998653
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=3.8e-06 Score=77.26 Aligned_cols=52 Identities=23% Similarity=0.598 Sum_probs=38.5
Q ss_pred cccccccccC-CCCcE----EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 40 FFECNICLDS-AQDPV----VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 40 ~~~C~ICld~-~~~Pv----vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
+..||||... ...|. +..|||.||..|+.+.+...+ . .||+|+..+...++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~--------~-~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS--------G-SCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC--------C-CCCCCCCccchhhcc
Confidence 4689999974 34442 226999999999999765332 4 899999988766543
No 33
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.1e-06 Score=80.59 Aligned_cols=50 Identities=36% Similarity=0.870 Sum_probs=44.3
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....+|.|.||...+..||+++|||.||..||.+-+... . .||.||..+.
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~---------~-~cp~Cr~~l~ 129 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE---------T-ECPLCRDELV 129 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC---------C-CCcccccccc
Confidence 346789999999999999999999999999999977643 4 9999999986
No 34
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.9e-06 Score=77.14 Aligned_cols=49 Identities=31% Similarity=0.675 Sum_probs=42.7
Q ss_pred cccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
.-+|.||+....-||.+.|+|.||+-||+.-...+. + .|++||.+|..+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk--------~-~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDK--------K-TCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCC--------C-CCceecCCCCcc
Confidence 458999999999999999999999999998777653 4 899999999643
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.93 E-value=5.8e-06 Score=77.73 Aligned_cols=57 Identities=33% Similarity=0.800 Sum_probs=47.2
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
-...|.||.|.-++-.+-+|||+.|..|+..|.+.+ ++. .||.||.+|+-++.+.++
T Consensus 368 TFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd-------~gq-~CPFCRcEIKGte~viid 424 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD-------EGQ-TCPFCRCEIKGTEPVIID 424 (563)
T ss_pred hHHHHHHhhccCCCcccccccchHHHHHHHhhcccC-------CCC-CCCceeeEeccccceeee
Confidence 345899999999998888999999999999999755 235 999999999876655443
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1.8e-06 Score=79.85 Aligned_cols=51 Identities=29% Similarity=0.704 Sum_probs=43.5
Q ss_pred CCCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.+...+.|+|||+.+...+.+ .|+|-||..||..-+.... . .||.||+.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn--------~-ecptcRk~l~ 90 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN--------N-ECPTCRKKLV 90 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC--------C-CCchHHhhcc
Confidence 566789999999999988776 4999999999988777653 6 9999999874
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.77 E-value=9.6e-06 Score=69.87 Aligned_cols=47 Identities=34% Similarity=0.729 Sum_probs=40.4
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.-.|.|-||...+..||++.|||.||..|..+-.+.. . .|-+|.+..
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg---------~-~C~~Cgk~t 240 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG---------D-ECGVCGKAT 240 (259)
T ss_pred CCceeehhchhhccchhhhhcchhHHHHHHHHHhccC---------C-cceecchhh
Confidence 3468999999999999999999999999998877643 4 899997765
No 38
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=4.6e-05 Score=68.60 Aligned_cols=68 Identities=26% Similarity=0.580 Sum_probs=48.9
Q ss_pred HhhhcCCCCCCC--CCCCCCCCcccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 20 LKQKWSPTSAPT--NVPEKDGSFFECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 20 ~~~~wk~~~~~~--~~~~~~~~~~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
+.++|+.....+ ..........+|++|.+....|.+.. |||.||+.||..-...+- -+.||.|...+.
T Consensus 217 ~l~sw~~~l~~ap~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a--------sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 217 VLKSWKLDLDRAPKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA--------SFTCPLCGENVE 287 (298)
T ss_pred HHHhhcccccCCCCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh--------hcccCccCCCCc
Confidence 356776663332 12234557789999999999998765 999999999987665331 239999977664
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.67 E-value=1.7e-05 Score=57.74 Aligned_cols=56 Identities=30% Similarity=0.622 Sum_probs=27.1
Q ss_pred cccccccccCCC-C---cEEc----cCCCccCHHHHHHhhhhhcCCcccc--ccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQ-D---PVVT----LCGHLYCWPCIYKWLHVQTSSLDAD--EQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~-~---Pvvt----~CGH~fC~~Ci~~wl~~~~~s~~~~--~~~~~CPvCr~~v~~ 96 (260)
+.+|.||..... + |++. .|+..|+..||++|+.....+...- -.. +||.|+.+|+-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G-~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFG-ECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EE-E-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeeccccc-CCcCCCCeeeE
Confidence 568999998765 2 3322 5999999999999998654332111 123 79999998864
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=6.3e-05 Score=69.98 Aligned_cols=49 Identities=39% Similarity=0.734 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+...+|-||++..++-+++||-|+ .|..|.+...-.+ . .||+||..+..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~---------n-~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQT---------N-NCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhh---------c-CCCccccchHh
Confidence 346799999999999999999997 6999997755333 4 89999999853
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.60 E-value=3.8e-05 Score=53.81 Aligned_cols=45 Identities=29% Similarity=0.636 Sum_probs=31.1
Q ss_pred CCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCC
Q 024938 37 DGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPV 89 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPv 89 (260)
..-.+.|||.+..+.+||. ..|||.|....|..|+... ... .||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-------~~~-~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-------GSK-RCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-------S-E-E-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-------CCC-CCCC
Confidence 3456899999999999988 5899999999999999433 224 9998
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.3e-05 Score=55.30 Aligned_cols=46 Identities=35% Similarity=0.898 Sum_probs=39.3
Q ss_pred ccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 41 FECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.+|-||.|...+.|.-.|||. .|+.|-.+.++.. +. .||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--------~g-~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--------HG-CCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--------CC-cCcchhhHHH
Confidence 689999999999999999996 6999988876632 25 9999999885
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.8e-05 Score=73.33 Aligned_cols=59 Identities=37% Similarity=0.764 Sum_probs=47.5
Q ss_pred CcccccccccCCCCc-----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccC
Q 024938 39 SFFECNICLDSAQDP-----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGR 105 (260)
Q Consensus 39 ~~~~C~ICld~~~~P-----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 105 (260)
....||||+|...-+ +.+.|||.|-..||.+|+.... +..||.|+.......+.+.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~--------~~~cp~c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKT--------KMQCPLCSGKATKRQIRPEYAL 66 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhh--------hhhCcccCChhHHHHHHHHHHH
Confidence 346899999998765 4568999999999999997332 3399999998888888777653
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.52 E-value=4.3e-05 Score=72.95 Aligned_cols=55 Identities=36% Similarity=0.834 Sum_probs=47.3
Q ss_pred CCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
.++.+.|+||...+.+|+.+ .|||.||..|+..|+..+ . .||+|+..+.....++
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~---------~-~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNH---------Q-KCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccC---------c-CCcccccccchhhccC
Confidence 56789999999999999994 999999999999999864 4 9999988876655544
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.43 E-value=7.2e-05 Score=71.36 Aligned_cols=47 Identities=30% Similarity=0.798 Sum_probs=39.5
Q ss_pred CCCcccccccccCCCCcE----EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 37 DGSFFECNICLDSAQDPV----VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pv----vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
..+.-.|||||+.+.+-+ .+.|.|.|+..|+.+|... .||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~------------scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS------------SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC------------cChhhhhhcC
Confidence 445679999999998754 3579999999999999973 8999998765
No 46
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.41 E-value=6.7e-05 Score=72.92 Aligned_cols=58 Identities=28% Similarity=0.742 Sum_probs=48.1
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
....+...|.+|.|...+++++.|.|.||..||.+++..-. ..... +||+|-..++.+
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~----~~~nv-tCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFM----ENNNV-TCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhh----cccCC-CCcccccccccc
Confidence 34557789999999999999999999999999999998654 22334 999998887755
No 47
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.36 E-value=0.00017 Score=48.86 Aligned_cols=42 Identities=31% Similarity=0.875 Sum_probs=33.5
Q ss_pred ccccccc--CCCCcEEccCC-----CccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 42 ECNICLD--SAQDPVVTLCG-----HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 42 ~C~ICld--~~~~Pvvt~CG-----H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
.|-||++ ...++.+.+|. |.++..|+.+|+..+. .. .||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-------~~-~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-------NK-TCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-------CC-cCCCCC
Confidence 4889997 44567888985 7899999999998763 24 899995
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8.7e-05 Score=71.56 Aligned_cols=50 Identities=24% Similarity=0.713 Sum_probs=39.0
Q ss_pred CCCcccccccccCCCC-----------------cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 37 DGSFFECNICLDSAQD-----------------PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~-----------------Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.+...+|+||+....- =++++|.|+|+..|+.+|.+.- +..||+||..+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y---------kl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY---------KLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh---------cccCCccCCCCC
Confidence 4456799999977631 1356999999999999999843 349999998764
No 49
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8e-05 Score=67.71 Aligned_cols=47 Identities=36% Similarity=0.714 Sum_probs=40.4
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
-.|.|-||...+.+||++.|||.||-.|..+-++.. . .|.+|.+.+.
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~---------~-~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG---------E-KCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccC---------C-cceecccccc
Confidence 457899999999999999999999999988777643 3 8999987764
No 50
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=8.3e-05 Score=66.88 Aligned_cols=59 Identities=27% Similarity=0.537 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCCCcE----------EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPV----------VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pv----------vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~ 102 (260)
+..++..|.||-..+..-+ .+.|+|.|+-.||..|.-..+ +.+||.||..+..+.+..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--------kqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--------KQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--------CCCCchHHHHhhHhhhccC
Confidence 3446679999997765332 468999999999999998764 5599999998875554443
No 51
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.21 E-value=6.1e-05 Score=68.65 Aligned_cols=54 Identities=30% Similarity=0.691 Sum_probs=42.0
Q ss_pred ccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc-ccccccccccc
Q 024938 41 FECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA-NISVASLVPLY 103 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~-~v~~~~l~p~~ 103 (260)
+.|+.|..++.+|+.| .|+|.||..||..-|-.. .+.||.|.. .+..+.+.|.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds---------Df~CpnC~rkdvlld~l~pD~ 330 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS---------DFKCPNCSRKDVLLDGLTPDI 330 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc---------cccCCCcccccchhhccCccH
Confidence 8999999999999999 599999999998777633 349999954 34444444443
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00025 Score=66.42 Aligned_cols=55 Identities=29% Similarity=0.792 Sum_probs=42.0
Q ss_pred CCcccccccccCCCCcE-----E---ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 38 GSFFECNICLDSAQDPV-----V---TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pv-----v---t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
..+..|.||++...+.. . ..|.|.||..||..|-..... +..-.+ .||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~--~~~~sk-sCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF--ESKTSK-SCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc--cccccc-CCCcccCccc
Confidence 45789999999988765 2 469999999999999965431 111235 9999998765
No 53
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.12 E-value=0.00013 Score=67.18 Aligned_cols=53 Identities=28% Similarity=0.634 Sum_probs=44.9
Q ss_pred CCCCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
........|.+|..++.|+.. +.|-|+||..||.+++... + .||.|...+...
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~---------~-~CP~C~i~ih~t 63 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES---------K-YCPTCDIVIHKT 63 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh---------c-cCCccceeccCc
Confidence 345678899999999999864 6799999999999999864 5 999999887643
No 54
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.11 E-value=0.00038 Score=51.66 Aligned_cols=30 Identities=30% Similarity=0.872 Sum_probs=26.3
Q ss_pred cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 57 LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 57 ~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.|.|.|+..||++||..+. .||++++....
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~----------~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKG----------VCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCC----------CCCCCCceeEE
Confidence 5999999999999999864 99999987653
No 55
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.11 E-value=0.00013 Score=74.86 Aligned_cols=52 Identities=33% Similarity=0.846 Sum_probs=40.5
Q ss_pred CCCCcccccccccCCC--C---c--EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQ--D---P--VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~--~---P--vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
..++..+|+||...+. + | +--.|.|-|+..|+++|++... .. .||+||.++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-------~s-~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-------RS-NCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-------CC-CCCccccccc
Confidence 5677889999998765 2 2 2235999999999999999764 23 9999997764
No 56
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00011 Score=54.08 Aligned_cols=32 Identities=38% Similarity=0.912 Sum_probs=26.9
Q ss_pred cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 57 LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 57 ~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.|.|.|+..||.+|+..++ .+. .||+||+...
T Consensus 50 ~C~h~fh~hCI~~wl~~~t------sq~-~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPT------SQG-QCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCcc------ccc-cCCcchheeE
Confidence 4999999999999999764 235 9999998764
No 57
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=97.00 E-value=0.00083 Score=56.12 Aligned_cols=63 Identities=21% Similarity=0.572 Sum_probs=43.3
Q ss_pred CcccccccccCCCCcEEccCC------------Ccc-CHHHHHHhhhhhcCCccc---------------------cccC
Q 024938 39 SFFECNICLDSAQDPVVTLCG------------HLY-CWPCIYKWLHVQTSSLDA---------------------DEQQ 84 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CG------------H~f-C~~Ci~~wl~~~~~s~~~---------------------~~~~ 84 (260)
++..||||+|..++.|.|.|. ..| +..|+.++.+........ ....
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 356899999999999998643 322 577888877643222111 1224
Q ss_pred cCCCCcccccccccccc
Q 024938 85 QNCPVCKANISVASLVP 101 (260)
Q Consensus 85 ~~CPvCr~~v~~~~l~p 101 (260)
+.||+||..|..+.++.
T Consensus 81 L~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVVE 97 (162)
T ss_pred ccCccccCceeceEEch
Confidence 69999999998776653
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00072 Score=60.25 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=51.9
Q ss_pred CcccccccccCCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCCCCCC
Q 024938 39 SFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISS 110 (260)
Q Consensus 39 ~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~~~ 110 (260)
..+.||||.+.+.+. +.-+|||.+|..|+.+.+..+. .||+|..++..++++.+-..|..-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~----------v~pv~d~plkdrdiI~LqrGGTGfa 285 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM----------VDPVTDKPLKDRDIIGLQRGGTGFA 285 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc----------cccCCCCcCcccceEeeeccccccc
Confidence 578999999999874 3347999999999999998764 9999999999999998866555443
No 59
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00016 Score=65.64 Aligned_cols=42 Identities=36% Similarity=0.851 Sum_probs=35.7
Q ss_pred cccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...|.||+|...|.+.|.|||. -|..|-++. . .||+||+-+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-------------~-eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-------------N-ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-------------c-cCchHHHHHH
Confidence 6799999999999999999994 699996542 2 8999998764
No 60
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00066 Score=63.30 Aligned_cols=51 Identities=27% Similarity=0.570 Sum_probs=44.9
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...++..|+||.-.....|.++|+|.-|..||.+.+.+. + .|-.||..+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~---------k-~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC---------K-RCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC---------C-eeeEecceeee
Confidence 346788999999999999999999999999999999865 4 89999988764
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.95 E-value=0.00025 Score=71.71 Aligned_cols=72 Identities=18% Similarity=0.388 Sum_probs=51.3
Q ss_pred hhHhhhcCCCCCCCCCCC----CCCCcccccccccCCCCcEE---ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 18 ASLKQKWSPTSAPTNVPE----KDGSFFECNICLDSAQDPVV---TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 18 ~~~~~~wk~~~~~~~~~~----~~~~~~~C~ICld~~~~Pvv---t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
.....+|+..+...+... .-.....|++|+..+.+..+ ..|+|.||..||..|-.... +||+|
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq----------TCPiD 166 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ----------TCPVD 166 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc----------cCchh
Confidence 344667777776333221 22355689999988776432 46999999999999999753 99999
Q ss_pred ccccccccc
Q 024938 91 KANISVASL 99 (260)
Q Consensus 91 r~~v~~~~l 99 (260)
|..+....+
T Consensus 167 R~EF~~v~V 175 (1134)
T KOG0825|consen 167 RGEFGEVKV 175 (1134)
T ss_pred hhhhheeee
Confidence 999865433
No 62
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00068 Score=63.25 Aligned_cols=47 Identities=34% Similarity=0.778 Sum_probs=37.5
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.......|.||++...+.+.++|||..| |..-..+. . +||+||..+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----------~-~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----------P-QCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHhhC----------C-CCchhHHHHH
Confidence 3445679999999999999999999977 66544442 4 8999999874
No 63
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0068 Score=53.48 Aligned_cols=52 Identities=23% Similarity=0.631 Sum_probs=37.9
Q ss_pred cccccccCCC--CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 42 ECNICLDSAQ--DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 42 ~C~ICld~~~--~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.|..|...+. |-+.+-|-|+|+|.|+.+|...-.... .-..++||.|..+|-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanT--APaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANT--APAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcC--CCCcccCCCCCCccC
Confidence 6777877765 457788999999999999987543111 112348999998875
No 64
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0013 Score=60.78 Aligned_cols=57 Identities=32% Similarity=0.726 Sum_probs=47.2
Q ss_pred CCcccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.+...|+||+....+|.++. -|-.||++||..++... + .|||-..+....+++.++.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~---------~-~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY---------G-HCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc---------C-CCCccCCcchHHHHHHHhc
Confidence 35679999999999987765 69999999999999865 4 9999888887777776653
No 65
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0017 Score=61.14 Aligned_cols=52 Identities=25% Similarity=0.816 Sum_probs=36.8
Q ss_pred ccccccccCCCCcEE----ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 41 FECNICLDSAQDPVV----TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 41 ~~C~ICld~~~~Pvv----t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
-.|.||.|....-.- -.|||+|+..|+..|+.... -.+ .||.|+-.+....+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P------s~R-~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP------SNR-GCPICQIKLQERHV 60 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC------ccC-CCCceeecccceee
Confidence 479999666543222 24999999999999998654 125 99999955544433
No 66
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.24 E-value=0.0013 Score=66.80 Aligned_cols=52 Identities=29% Similarity=0.733 Sum_probs=44.2
Q ss_pred ccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
+.|.||++ ...++++.|||.||..|+...+.... .. .||.||..+...++..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-------~~-~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-------NA-PCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc-------CC-CCcHHHHHHHHHHHhh
Confidence 89999999 88889999999999999999888654 23 7999999988766544
No 67
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.11 E-value=0.011 Score=56.68 Aligned_cols=39 Identities=21% Similarity=0.504 Sum_probs=34.3
Q ss_pred CCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQT 75 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~ 75 (260)
+++++.|+||...+.+|++++|+|..|..|....+....
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp 39 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTP 39 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcccCC
Confidence 357899999999999999999999999999987766544
No 68
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.00 E-value=0.0034 Score=43.47 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=37.6
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~ 98 (260)
....|-.|...-...++++|||..|..|..-+-. . .||.|...+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY-----------n-gCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY-----------N-GCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhc-----------c-CCCCCCCcccCCC
Confidence 3456777888878889999999999999865443 3 8999998886543
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.85 E-value=0.012 Score=53.23 Aligned_cols=61 Identities=18% Similarity=0.417 Sum_probs=47.8
Q ss_pred CCCCcccccccccCCCCc---E-EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCCC
Q 024938 36 KDGSFFECNICLDSAQDP---V-VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGG 107 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~P---v-vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 107 (260)
.....+.|||....+..- | +.+|||+|+..+|.+.- .. . .||+|-.++...+++++.....
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~---------~-~Cp~c~~~f~~~DiI~Lnp~~e 173 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KS---------K-KCPVCGKPFTEEDIIPLNPPEE 173 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-cc---------c-cccccCCccccCCEEEecCCcc
Confidence 356789999999998542 2 24899999999998863 12 3 8999999999999988776443
No 70
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0066 Score=47.24 Aligned_cols=27 Identities=30% Similarity=0.971 Sum_probs=23.8
Q ss_pred cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 57 LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 57 ~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
-|.|.|+..||.+||+... .||+|.++
T Consensus 80 ~CNHaFH~hCisrWlktr~----------vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN----------VCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcC----------cCCCcCcc
Confidence 4999999999999999764 99999765
No 71
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.54 E-value=0.0053 Score=54.54 Aligned_cols=51 Identities=35% Similarity=0.852 Sum_probs=35.8
Q ss_pred cccccccccCCC-Cc-EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccc
Q 024938 40 FFECNICLDSAQ-DP-VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102 (260)
Q Consensus 40 ~~~C~ICld~~~-~P-vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~ 102 (260)
...|+.|.-... ++ .+|.|+|+||-.|...-.. . .||.||+.+....+..+
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~-----------~-~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP-----------D-VCPLCKKSIRIIQLNRS 55 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCCc-----------c-ccccccceeeeeecccc
Confidence 357888886654 34 3578999999999754221 3 89999999875544443
No 72
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.44 E-value=0.011 Score=48.09 Aligned_cols=52 Identities=27% Similarity=0.658 Sum_probs=42.2
Q ss_pred CcccccccccCCCCcEEcc----CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 39 SFFECNICLDSAQDPVVTL----CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~----CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
...+|+||.|.-.|...+. ||-..|--|....++..+ -.+ .||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~yp-vCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYP-VCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCC-CCCccccccccc
Confidence 5689999999999887774 999999999887776543 346 999999888643
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.0036 Score=59.43 Aligned_cols=78 Identities=18% Similarity=0.471 Sum_probs=48.7
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCC--cccccc
Q 024938 21 KQKWSPTSAPTNVPEKDGSFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPV--CKANIS 95 (260)
Q Consensus 21 ~~~wk~~~~~~~~~~~~~~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPv--Cr~~v~ 95 (260)
++.....+.++....-....++|.||.+...- =+.++|+|.||..|++.+..... .+..-...+||- |.....
T Consensus 165 ~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i--~eg~v~~l~Cp~~~C~~~a~ 242 (445)
T KOG1814|consen 165 KKEILQFDEEATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQI--QEGQVSCLKCPDPKCGSVAP 242 (445)
T ss_pred HHHHHhhhHHHHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhh--hcceeeeecCCCCCCcccCC
Confidence 44444555544444445567999999988653 35689999999999999988653 111112347875 444444
Q ss_pred ccccc
Q 024938 96 VASLV 100 (260)
Q Consensus 96 ~~~l~ 100 (260)
...+.
T Consensus 243 ~g~vK 247 (445)
T KOG1814|consen 243 PGQVK 247 (445)
T ss_pred chHHH
Confidence 43333
No 74
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.026 Score=53.53 Aligned_cols=71 Identities=20% Similarity=0.423 Sum_probs=50.4
Q ss_pred cCCCCCCCCCCC-----CCCCcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 24 WSPTSAPTNVPE-----KDGSFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 24 wk~~~~~~~~~~-----~~~~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
|....+...+.+ .....|.|||=.+.-.+ |+.+.|||+.|..-|.+...... ..++||.|-....
T Consensus 313 W~~~deLPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~-------~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 313 WNTKDELPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS-------QSFKCPYCPVEQL 385 (394)
T ss_pred ccccccCccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC-------eeeeCCCCCcccC
Confidence 766655444433 34567999998876653 89999999999999998776432 2369999977665
Q ss_pred cccccc
Q 024938 96 VASLVP 101 (260)
Q Consensus 96 ~~~l~p 101 (260)
..+.+.
T Consensus 386 ~~~~kq 391 (394)
T KOG2817|consen 386 ASDTKQ 391 (394)
T ss_pred HHhccc
Confidence 554443
No 75
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.02 Score=52.25 Aligned_cols=46 Identities=37% Similarity=0.759 Sum_probs=37.8
Q ss_pred cccccccccCCC------CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 40 FFECNICLDSAQ------DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 40 ~~~C~ICld~~~------~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
...|.||-+.+. -|.++.|||.+|..|+.+.+.... - .||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~--------i-~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSR--------I-LCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCce--------e-eccCCCCcc
Confidence 468999998875 378889999999999988777542 3 899999984
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.58 E-value=0.022 Score=38.45 Aligned_cols=43 Identities=23% Similarity=0.609 Sum_probs=20.9
Q ss_pred ccccccCCCCc--EEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 43 CNICLDSAQDP--VVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 43 C~ICld~~~~P--vvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
|++|.+.+..- ... +||+..|..|..+.++.. .. .||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--------~g-~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE--------GG-RCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS---------S-B-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc--------CC-CCCCCCCCC
Confidence 78898887321 223 599999999998877632 25 899999864
No 77
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.51 E-value=0.02 Score=54.25 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=37.3
Q ss_pred CcccccccccCCCC-c---EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQD-P---VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~-P---vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
-.+.|..|-+.+.. + -.++|.|+|+..|+++++.... .+ .||.||+-.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-------~r-sCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-------TR-SCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-------CC-CCccHHHHH
Confidence 35789999988753 2 2478999999999999997542 35 999998543
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.32 E-value=0.044 Score=51.32 Aligned_cols=52 Identities=27% Similarity=0.697 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+..++...|-||.+...-..++||+|..|.-|-.+.-..=. .+ .|++||..-
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-------~K-~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-------QK-GCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-------cc-CCCcccccc
Confidence 34567789999999999888999999999999866433211 24 999998763
No 79
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.88 E-value=0.038 Score=51.09 Aligned_cols=47 Identities=30% Similarity=0.736 Sum_probs=38.1
Q ss_pred CCCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...+.++||||.+.+..|+. -.=||+-|..|-.+.. . .||.||..+.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~------------~-~CP~Cr~~~g 91 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS------------N-KCPTCRLPIG 91 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhc------------c-cCCccccccc
Confidence 34567899999999999964 4568999999976433 3 8999999986
No 80
>PHA03096 p28-like protein; Provisional
Probab=93.74 E-value=0.034 Score=51.07 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=34.1
Q ss_pred ccccccccCCCCc--------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 41 FECNICLDSAQDP--------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 41 ~~C~ICld~~~~P--------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
-.|.||++...+- +...|.|.||..|+..|..... .....+ .||+|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~---~~e~~~-~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL---YKETEP-ENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh---hcccCc-cccchhhHH
Confidence 6899999887542 2346999999999999998653 112223 555555444
No 81
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.64 E-value=0.028 Score=51.58 Aligned_cols=60 Identities=27% Similarity=0.649 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCC-c--EEccCCCccCHHHHHHhhhhhcCC--------------ccccccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQD-P--VVTLCGHLYCWPCIYKWLHVQTSS--------------LDADEQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~-P--vvt~CGH~fC~~Ci~~wl~~~~~s--------------~~~~~~~~~CPvCr~~v~~ 96 (260)
+....-.|.|||--|.+ | ++|.|-|.++..|+.++|..--.- ....... .||+||..|..
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~ea-vcpVcre~i~~ 187 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEA-VCPVCRERIKI 187 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh-hhhHhhhhccc
Confidence 33455689999977754 3 678999999999998887621000 0001113 79999998863
No 82
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.021 Score=57.15 Aligned_cols=37 Identities=32% Similarity=0.657 Sum_probs=29.7
Q ss_pred CCCCcccccccccCCC----CcEEccCCCccCHHHHHHhhh
Q 024938 36 KDGSFFECNICLDSAQ----DPVVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~----~Pvvt~CGH~fC~~Ci~~wl~ 72 (260)
.+.+.+.|+||+..+. .||.+-|||..|..|+.....
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 3445678999987764 689999999999999977554
No 83
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.42 E-value=0.027 Score=46.03 Aligned_cols=34 Identities=32% Similarity=0.784 Sum_probs=27.0
Q ss_pred cccccccccCCCC--cEE-ccCC------CccCHHHHHHhhhh
Q 024938 40 FFECNICLDSAQD--PVV-TLCG------HLYCWPCIYKWLHV 73 (260)
Q Consensus 40 ~~~C~ICld~~~~--Pvv-t~CG------H~fC~~Ci~~wl~~ 73 (260)
..+|.||++...+ .|+ +.|| |.||..|+.+|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 5699999999877 654 4565 67999999999543
No 84
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.16 E-value=0.024 Score=60.62 Aligned_cols=48 Identities=35% Similarity=0.812 Sum_probs=41.8
Q ss_pred CCCCcccccccccCCC-CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 36 KDGSFFECNICLDSAQ-DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~-~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
+..+.+.|.||++.+. ...+..|||.+|..|+..|+..++ .||.|+..
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s----------~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS----------RCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc----------cCcchhhh
Confidence 4456789999999998 667889999999999999999875 89999854
No 85
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.071 Score=48.74 Aligned_cols=46 Identities=24% Similarity=0.676 Sum_probs=34.9
Q ss_pred cccccccC-CCCcE----EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 42 ECNICLDS-AQDPV----VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 42 ~C~ICld~-~~~Pv----vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.||+|... +.+|- +-+|||..|-.|+.+.+...+ . .||.|-..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~--------~-~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP--------A-QCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC--------C-CCCcccchhhh
Confidence 59999844 45552 237999999999999887653 5 99999777653
No 86
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.092 Score=47.10 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=34.4
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhh
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQ 74 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~ 74 (260)
+.+.+...|..||..+.+||+++=||+||..||.+++-.+
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 3455566789999999999999999999999999887755
No 87
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.49 E-value=0.028 Score=56.85 Aligned_cols=53 Identities=26% Similarity=0.723 Sum_probs=42.5
Q ss_pred CCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.-.++|+||...+.+|+.+.|-|.||.-|+..-+..+. ... .|++|+..+..
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~------~~~-~~~lc~~~~eK 70 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK------GPK-QCALCKSDIEK 70 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC------ccc-cchhhhhhhhh
Confidence 345689999999999999999999999999877665443 124 99999977653
No 88
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.42 E-value=0.054 Score=41.45 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=26.7
Q ss_pred CCCcccccccccCCCCcE--EccCCCccCHHHHHH
Q 024938 37 DGSFFECNICLDSAQDPV--VTLCGHLYCWPCIYK 69 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pv--vt~CGH~fC~~Ci~~ 69 (260)
+.+...|++|...+...+ +.||||.+|..|+.|
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 445668999999998764 469999999999854
No 89
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=0.069 Score=55.03 Aligned_cols=43 Identities=30% Similarity=0.750 Sum_probs=35.0
Q ss_pred CcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
....|..|.-.+.-|+| ..|||.|+..|+.+- .. .||.|+.+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~------------~~-~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLEDK------------ED-KCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhccC------------cc-cCCccchhh
Confidence 45699999999999866 799999999999721 24 899998844
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.082 Score=48.82 Aligned_cols=44 Identities=20% Similarity=0.593 Sum_probs=29.2
Q ss_pred cccccccccCC-CCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 40 FFECNICLDSA-QDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 40 ~~~C~ICld~~-~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.-.|.-|---. .-.++++|.|.||.+|... +. .| .||.|...|.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~---------dK-~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DS---------DK-ICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--Cc---------cc-cCcCcccHHH
Confidence 34566665332 3356789999999999642 22 25 8999977664
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.61 E-value=0.15 Score=52.69 Aligned_cols=55 Identities=27% Similarity=0.681 Sum_probs=41.4
Q ss_pred CCcccccccccCCC--CcEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 38 GSFFECNICLDSAQ--DPVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 38 ~~~~~C~ICld~~~--~Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....+|-||.+.+. .|+- ..|-|+|+..||.+|.... ....+..+.||.|..+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~---ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSS---EKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHh---hhccCccccCCcccchhc
Confidence 46789999999986 4543 3589999999999999872 233345579999986543
No 92
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.12 Score=44.21 Aligned_cols=58 Identities=24% Similarity=0.573 Sum_probs=37.2
Q ss_pred CCcccccccccCCCCcEE-------ccCCCccCHHHHHHhhhhhcCCcccccc--CcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVV-------TLCGHLYCWPCIYKWLHVQTSSLDADEQ--QQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvv-------t~CGH~fC~~Ci~~wl~~~~~s~~~~~~--~~~CPvCr~~v~~ 96 (260)
++.-.|.||..+--+..+ ..||..|+.-|++.||..=-.+...-.. . .||.|..++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFG-eCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFG-ECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeec-cCCCCCCccee
Confidence 344566777655433322 3699999999999999854333222111 3 89999888754
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.23 E-value=0.24 Score=41.60 Aligned_cols=50 Identities=20% Similarity=0.541 Sum_probs=36.5
Q ss_pred CCcccccccccCCCCcEEccCCC-----ccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGH-----LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH-----~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+..|=||.+... +...+|.. ..+..|+.+|+..+. .. .|+.|+.....
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-------~~-~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-------NK-SCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-------CC-cccccCCeEEE
Confidence 45569999998864 33456654 348999999999653 35 99999888753
No 94
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.23 E-value=0.14 Score=34.17 Aligned_cols=40 Identities=25% Similarity=0.948 Sum_probs=25.7
Q ss_pred ccccccCCCC--cEEccCCC-----ccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 43 CNICLDSAQD--PVVTLCGH-----LYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 43 C~ICld~~~~--Pvvt~CGH-----~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
|-||++...+ +.+.+|.- ..+..|+.+|+..+. .. +|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~-------~~-~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG-------NR-KCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT--------S-B-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC-------CC-cCCCC
Confidence 6788876543 57788764 458899999999753 24 78887
No 95
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.87 E-value=0.19 Score=34.10 Aligned_cols=46 Identities=24% Similarity=0.694 Sum_probs=25.0
Q ss_pred ccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 41 FECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 41 ~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
+.|||....+..|+. ..|.|.-|.+ +..|++.... ...+.||+|.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~-----~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQR-----TPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHH-----S---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhc-----cCCeECcCCcC
Confidence 689999999999987 5799998876 4466664421 12368999976
No 96
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.38 E-value=0.35 Score=31.74 Aligned_cols=40 Identities=20% Similarity=0.556 Sum_probs=24.8
Q ss_pred ccccccCCCCcEEcc---CCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 43 CNICLDSAQDPVVTL---CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 43 C~ICld~~~~Pvvt~---CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
|.+|.+.+...+.-+ |+-.++..|+..++...+ .. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-------~~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-------NP-KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-------S--B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-------CC-CCcCC
Confidence 788999998887754 999999999999998653 23 69987
No 97
>PHA02862 5L protein; Provisional
Probab=90.06 E-value=0.23 Score=41.11 Aligned_cols=47 Identities=23% Similarity=0.692 Sum_probs=35.1
Q ss_pred ccccccccCCCCcEEccCCC-----ccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 41 FECNICLDSAQDPVVTLCGH-----LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH-----~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..|=||.+.-.+. +-+|.. ..|..|+.+|+.... .. .|+.|+.+...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-------k~-~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-------KK-ECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-------Cc-CccCCCCeEEE
Confidence 4799999887655 466654 358999999997542 34 99999988753
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.41 E-value=0.27 Score=46.62 Aligned_cols=42 Identities=21% Similarity=0.773 Sum_probs=29.8
Q ss_pred CCCccCHHHHHHhhhhhcCCcccc---ccCcCCCCcccccccccc
Q 024938 58 CGHLYCWPCIYKWLHVQTSSLDAD---EQQQNCPVCKANISVASL 99 (260)
Q Consensus 58 CGH~fC~~Ci~~wl~~~~~s~~~~---~~~~~CPvCr~~v~~~~l 99 (260)
|.-..|..|+-+|+..+.+...++ .++..||.||+.+...|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 445668999999999776444442 223499999999876543
No 99
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.11 E-value=0.29 Score=45.37 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 36 KDGSFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
.....|.||+=.+...+ |+.+.|||..-..-+.+..+... ..++||.|-......++..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~-------~~FKCPYCP~~~~~~~~~r 393 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV-------LSFKCPYCPEMSKYENILR 393 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc-------EEeeCCCCCcchhhhhhhc
Confidence 55678999998877653 89999999999988877655432 3469999977665555443
No 100
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=88.44 E-value=0.27 Score=53.69 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCcccccccccCC-C-C-cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSA-Q-D-PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~-~-~-Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.+..|-||.... . . .+.+.|+|.|+..|..+.|+..=-....--....||+|+..+..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4566899998553 2 2 46789999999999987776431000000001389999999864
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.93 E-value=0.35 Score=45.35 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=33.2
Q ss_pred cccccccccCCCC--cEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 40 FFECNICLDSAQD--PVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 40 ~~~C~ICld~~~~--Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
+..||.|.+.+.. --. .+||...|.-|+...-+.= .. .||.||.....+++
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--------ng-rcpacrr~y~denv 68 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--------NG-RCPACRRKYDDENV 68 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc--------cC-CChHhhhhccccce
Confidence 3459999998753 222 3688777777765443321 25 89999998765543
No 102
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=0.35 Score=44.24 Aligned_cols=56 Identities=23% Similarity=0.643 Sum_probs=40.7
Q ss_pred CCcccccccccCCCCcEEccC----CCccCHHHHHHhhhhhcCCccc--cccCcCCCCccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLC----GHLYCWPCIYKWLHVQTSSLDA--DEQQQNCPVCKANI 94 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~C----GH~fC~~Ci~~wl~~~~~s~~~--~~~~~~CPvCr~~v 94 (260)
...+.|-+|.+.++|-....| .|.||++|-.+.++.+..+.+- .-.. +||+-...+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGd-kCPLvgS~v 327 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGD-KCPLVGSNV 327 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCC-cCcccCCcc
Confidence 345899999999999876666 6999999999999987654322 1123 677665544
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=0.33 Score=46.45 Aligned_cols=55 Identities=25% Similarity=0.671 Sum_probs=37.0
Q ss_pred CcccccccccCCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCC--cccccccc
Q 024938 39 SFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPV--CKANISVA 97 (260)
Q Consensus 39 ~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPv--Cr~~v~~~ 97 (260)
...+|.||......+ .+..|+|.||..|+++.+..+. ..+... .||. |...+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~---~~~~~~-~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKL---LSGTVI-RCPHDGCESRLTLE 205 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhh---ccCCCc-cCCCCCCCccCCHH
Confidence 467999999444332 2567999999999999998652 122234 7764 66666543
No 104
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=0.6 Score=45.38 Aligned_cols=65 Identities=25% Similarity=0.544 Sum_probs=44.7
Q ss_pred CCcccccccccCCCC-cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCC--Cccccccccccccccc
Q 024938 38 GSFFECNICLDSAQD-PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCP--VCKANISVASLVPLYG 104 (260)
Q Consensus 38 ~~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CP--vCr~~v~~~~l~p~~~ 104 (260)
.....|.||.+.... .+.+.|||.||..|+..++..+-....... .+|| -|++.+..+.+..+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~--i~cp~~~C~a~v~~~~i~~~~s 135 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK--IKCPAHGCPALVGEDTVEKLVS 135 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccccc--ccCCCCCccccCCCceeeeecC
Confidence 456899999999885 566789999999999998986642221111 2565 4777776555444433
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=0.52 Score=41.33 Aligned_cols=39 Identities=28% Similarity=0.739 Sum_probs=30.8
Q ss_pred ccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 43 CNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 43 C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
|-+|.+.-..-+.+||.|+ +|..|-.. + + .||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~------------~-~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-L------------R-ICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-C------------c-cCCCCcChhh
Confidence 9999988888677899995 79999543 2 3 8999988664
No 106
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=82.66 E-value=0.63 Score=42.58 Aligned_cols=43 Identities=30% Similarity=0.666 Sum_probs=33.9
Q ss_pred cccccccccCCC----CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 40 FFECNICLDSAQ----DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 40 ~~~C~ICld~~~----~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
...||||.+.+. .+.+++|||.-+..|+...... . +.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~---------~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE---------G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc---------C-CCCCcccc
Confidence 445999998764 4678899999998888776653 2 49999988
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.50 E-value=0.78 Score=42.22 Aligned_cols=42 Identities=19% Similarity=0.614 Sum_probs=29.7
Q ss_pred CCCccCHHHHHHhhhhhcCCcccc---ccCcCCCCcccccccccc
Q 024938 58 CGHLYCWPCIYKWLHVQTSSLDAD---EQQQNCPVCKANISVASL 99 (260)
Q Consensus 58 CGH~fC~~Ci~~wl~~~~~s~~~~---~~~~~CPvCr~~v~~~~l 99 (260)
|....|..|+.+|+....+...+. +++.+||.||+.+...++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 566778999999998665333331 333499999999876554
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.17 E-value=1.8 Score=44.89 Aligned_cols=52 Identities=19% Similarity=0.586 Sum_probs=38.3
Q ss_pred CCcccccccccC--CCCcEEccCCCc-----cCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 38 GSFFECNICLDS--AQDPVVTLCGHL-----YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 38 ~~~~~C~ICld~--~~~Pvvt~CGH~-----fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
++...|-||... ..+|..-||... .+..|+-+|+.... .+ +|-+|+.+++-+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~-------~~-kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG-------TK-KCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC-------Cc-ceeeecceeeee
Confidence 455799999844 346766677653 48999999998543 34 999999988644
No 109
>CHL00038 psbL photosystem II protein L
Probab=78.64 E-value=1.8 Score=27.50 Aligned_cols=17 Identities=41% Similarity=0.553 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHH
Q 024938 241 SLNRVSLFLFCCLVLCL 257 (260)
Q Consensus 241 ~l~ri~~fl~~~~~lcl 257 (260)
-|||-++|++.++|++|
T Consensus 12 ELNRTSLy~GLLlifvl 28 (38)
T CHL00038 12 ELNRTSLYWGLLLIFVL 28 (38)
T ss_pred chhhhhHHHHHHHHHHH
Confidence 58999999888888777
No 110
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.71 E-value=2.7 Score=38.00 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=43.6
Q ss_pred CCcccccccccCCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 38 GSFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
...|.|||-.-.+..- ....|||.|-..-+++.-. . .|++|.+.+..++.+.+-+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika-----------s-~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA-----------S-VCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh-----------c-cccccCCcccccCeEeeCC
Confidence 4678999988777653 3457999999988877543 3 8999999999998887765
No 111
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=75.52 E-value=0.69 Score=41.50 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=34.8
Q ss_pred Ccccccccc-cCCCCcE-E---cc-CCCccCHHHHHHhhhhhcCCccccccCcCCC--Ccccccc
Q 024938 39 SFFECNICL-DSAQDPV-V---TL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCP--VCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICl-d~~~~Pv-v---t~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CP--vCr~~v~ 95 (260)
.+-.||||. |.+-.|- . -| |-|..|-.|+.+.+.... . +|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp--------A-qCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP--------A-QCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC--------C-CCCCccHHHHHH
Confidence 345899999 4455552 2 13 999999999999998653 4 899 6865543
No 112
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.21 E-value=2.1 Score=38.80 Aligned_cols=58 Identities=19% Similarity=0.496 Sum_probs=39.6
Q ss_pred CCCCCcccccccccCCCCcE----EccCC-----CccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 35 EKDGSFFECNICLDSAQDPV----VTLCG-----HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pv----vt~CG-----H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
++.+.+-.|=||+..-+|-. |-||- |-.+..|+++|++.+.. .++.+.. .||-|+.+.
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~n~~q~V-~C~QCqTEY 81 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-GNPLQTV-SCPQCQTEY 81 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc-CCCCcee-echhhcchh
Confidence 34556778999997766532 23543 55788999999998753 2223334 999998774
No 113
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=72.27 E-value=1.3 Score=29.80 Aligned_cols=32 Identities=25% Similarity=0.770 Sum_probs=21.1
Q ss_pred EccCC-CccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 55 VTLCG-HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 55 vt~CG-H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...|. |-.|..|+...+... . .||+|+.++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s---------~-~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRS---------D-RCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSS---------S-EETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhccc---------c-CCCcccCcCcc
Confidence 44565 778999999988765 4 99999988753
No 114
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=70.73 E-value=7.6 Score=25.86 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=5.0
Q ss_pred CChhhHhHH
Q 024938 227 NNPRIRRQE 235 (260)
Q Consensus 227 ~~pr~r~~~ 235 (260)
.+|..||..
T Consensus 20 ~~~qar~~l 28 (52)
T TIGR01294 20 MPQQARQNL 28 (52)
T ss_pred CCHHHHHHH
Confidence 466655544
No 115
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.71 E-value=5.4 Score=29.28 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=31.5
Q ss_pred cccccccCCC----CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccc
Q 024938 42 ECNICLDSAQ----DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102 (260)
Q Consensus 42 ~C~ICld~~~----~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~ 102 (260)
.|-.|-.++. +..+-.=.|.||..|....++ . .||.|...+....+.|.
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~-----------g-~CPnCGGelv~RP~RPa 59 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH-----------G-LCPNCGGELVARPIRPA 59 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc-----------C-cCCCCCchhhcCcCChH
Confidence 3555554432 233333347899999988776 5 99999888765554443
No 116
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=66.49 E-value=4.9 Score=41.00 Aligned_cols=57 Identities=18% Similarity=0.385 Sum_probs=39.1
Q ss_pred CCCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~ 98 (260)
...-.+.|+|+.-.+.-|.. ..|.|+-|.+-. |+-... .....+.||+|.+....+.
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n----~~~pTW~CPVC~~~~~~e~ 359 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMN----EQKPTWRCPVCQKAAPFEG 359 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchh--hhHHhc----cCCCeeeCccCCccccccc
Confidence 45567899999988887765 579999888764 332221 1123479999998876443
No 117
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=65.56 E-value=9.5 Score=28.38 Aligned_cols=49 Identities=29% Similarity=0.514 Sum_probs=19.4
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
....|.||-|.+. ++.+. .|+-..|.+|..-=.+. +.+ .||-|+.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke--------g~q-~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE--------GNQ-VCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT--------S-S-B-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc--------Ccc-cccccCCCccc
Confidence 4568999998874 33332 58888999998543332 235 99999976653
No 118
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=65.00 E-value=5.6 Score=25.36 Aligned_cols=20 Identities=55% Similarity=0.783 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHH-hhC
Q 024938 241 SLNRVSLFLFCCLVLCL-LLF 260 (260)
Q Consensus 241 ~l~ri~~fl~~~~~lcl-l~f 260 (260)
-|||-++|++.++|+-| +||
T Consensus 13 ELNRTSLy~GlLlifvl~vLF 33 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVLGILF 33 (39)
T ss_pred eechhhHHHHHHHHHHHHHHH
Confidence 58999999888777766 444
No 119
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=63.63 E-value=4.2 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=10.2
Q ss_pred ccCHHHHHHhhhhh
Q 024938 61 LYCWPCIYKWLHVQ 74 (260)
Q Consensus 61 ~fC~~Ci~~wl~~~ 74 (260)
.||+.|+.+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999854
No 120
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.88 E-value=4.1 Score=42.72 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=27.8
Q ss_pred CCCcccccccccCC-CCc-EEccCCCccCHHHHHHhhh
Q 024938 37 DGSFFECNICLDSA-QDP-VVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 37 ~~~~~~C~ICld~~-~~P-vvt~CGH~fC~~Ci~~wl~ 72 (260)
.+....|.+|...+ ..| ++.+|||.|++.||.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34556899999665 355 5679999999999987665
No 121
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=62.67 E-value=1.4 Score=40.35 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCcccccccccCCCCcEEccC-----CCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 38 GSFFECNICLDSAQDPVVTLC-----GHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~C-----GH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
...-.||||.....-.++..= -|.+|.-|-.+|-... ..||.|...
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R----------~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR----------IKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T----------TS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC----------CCCcCCCCC
Confidence 345799999998876665543 3678999999998864 399999654
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.53 E-value=6.1 Score=41.13 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=35.4
Q ss_pred CcccccccccCCCCcE----Ec---cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQDPV----VT---LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pv----vt---~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+...|.||...+.+++ +. .|+|.+|..||..|.+.-- ....+..|+.|..-|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~----~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLE----ESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhh----ccccccccccHHHHhhh
Confidence 3456777776665532 23 4999999999999998532 11223377888776643
No 123
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.91 E-value=8.1 Score=26.72 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=23.4
Q ss_pred cccccccccCC--CCcEEc--cCCCccCHHHHHH
Q 024938 40 FFECNICLDSA--QDPVVT--LCGHLYCWPCIYK 69 (260)
Q Consensus 40 ~~~C~ICld~~--~~Pvvt--~CGH~fC~~Ci~~ 69 (260)
.-.|++|.+.+ .+.++. .||-.|++.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45899999999 555543 6999999999643
No 124
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=59.70 E-value=9.4 Score=34.53 Aligned_cols=50 Identities=22% Similarity=0.595 Sum_probs=36.8
Q ss_pred CcccccccccCCCC----cEEccCCC-----ccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQD----PVVTLCGH-----LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~~----Pvvt~CGH-----~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+...|-||.+...+ +...+|.. ..+..|+..|+..+. .. .|.+|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~-------~~-~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG-------NI-TCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc-------Ce-eeeccccccee
Confidence 35789999986643 56777663 358999999998553 34 99999887653
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.37 E-value=4.1 Score=39.04 Aligned_cols=35 Identities=23% Similarity=0.645 Sum_probs=24.4
Q ss_pred cccccccccCCC---C--cEEccCCCccCHHHHHHhhhhh
Q 024938 40 FFECNICLDSAQ---D--PVVTLCGHLYCWPCIYKWLHVQ 74 (260)
Q Consensus 40 ~~~C~ICld~~~---~--Pvvt~CGH~fC~~Ci~~wl~~~ 74 (260)
...|++|.-... . -+.-.|||-|||.|...|...+
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCC
Confidence 446776665443 2 3444599999999999998754
No 126
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=58.62 E-value=2.5 Score=39.26 Aligned_cols=46 Identities=26% Similarity=0.528 Sum_probs=34.3
Q ss_pred CCcccccccccCCCCcEEcc----CC--CccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 38 GSFFECNICLDSAQDPVVTL----CG--HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~----CG--H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
...-.||||.....-.++.. =| +.+|.-|-.+|-... .+||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R----------~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR----------VKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC----------ccCCCCCCC
Confidence 34569999999887655432 33 678999999999864 399999764
No 127
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=58.43 E-value=0.86 Score=33.18 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=23.2
Q ss_pred cccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
+..||.|...+..- =+|.+|..|-..+... . .||-|..++.
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~~----------a-~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKKE----------A-FCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEEE----------E-E-TTT-SB-E
T ss_pred CCcCCCCCCccEEe----CCEEECccccccceec----------c-cCCCcccHHH
Confidence 35799999875421 1788899998776553 3 8999988875
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=57.05 E-value=5.4 Score=35.20 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=34.6
Q ss_pred CcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 39 SFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
....|++|...+...+.. .||-.|+..|+.+++... . .||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~---------~-~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR---------D-ICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhccc---------C-cCCchhc
Confidence 346899999998776543 577789999999999864 3 8999943
No 129
>PLN02436 cellulose synthase A
Probab=52.71 E-value=15 Score=39.67 Aligned_cols=49 Identities=33% Similarity=0.663 Sum_probs=33.8
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
....|.||.|.+. ++-+. .|+--.|.+|..- -... +.. .||.||.....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~e-------g~~-~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERRE-------GNQ-ACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhc-------CCc-cCcccCCchhh
Confidence 3459999999974 34332 4888899999843 2211 335 99999998763
No 130
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.53 E-value=8.2 Score=37.51 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=16.6
Q ss_pred CCCcEEccCCCccCHHHHHHhh
Q 024938 50 AQDPVVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 50 ~~~Pvvt~CGH~fC~~Ci~~wl 71 (260)
...+|.-.|||.|||.|...|-
T Consensus 176 ~~~~v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 176 ESVEVDCGCGHEFCFACGEESH 197 (444)
T ss_pred CccceeCCCCchhHhhcccccc
Confidence 3345777899999999986544
No 131
>PLN02189 cellulose synthase
Probab=52.25 E-value=15 Score=39.43 Aligned_cols=50 Identities=34% Similarity=0.612 Sum_probs=34.0
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
....|.||.|.+. ++-+. .|+--.|.+|..- -... +.+ .||.||......
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~e-------g~q-~CpqCkt~Y~r~ 89 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERRE-------GTQ-NCPQCKTRYKRL 89 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhc-------CCc-cCcccCCchhhc
Confidence 3459999999864 23332 4888899999843 2211 335 999999988643
No 132
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=51.92 E-value=6.3 Score=36.73 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=34.5
Q ss_pred CCCcccccccccCCCCcEEc---cCC--CccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 37 DGSFFECNICLDSAQDPVVT---LCG--HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt---~CG--H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
.+..-.||||-....-.++. .=| +.+|.-|-.+|-.... +||.|..
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~----------~C~~Cg~ 234 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRV----------KCSNCEQ 234 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCc----------cCCCCCC
Confidence 34568999999988766542 233 5679999999998642 9999975
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.66 E-value=19 Score=35.14 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=48.9
Q ss_pred ccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCCC
Q 024938 41 FECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGG 107 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 107 (260)
+.|.|-.+..++||+-+ -||+|=..=|.+++... . +||+-..+++.++++++.....
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~---------G-~DPIt~~pLs~eelV~Ik~~~~ 58 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET---------G-KDPITNEPLSIEELVEIKVPAQ 58 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc---------C-CCCCCCCcCCHHHeeecccccc
Confidence 36999999999999865 99999999999999865 4 8999999999999988765544
No 134
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.26 E-value=8.3 Score=40.03 Aligned_cols=35 Identities=26% Similarity=0.750 Sum_probs=24.3
Q ss_pred ccccccccCCCCc--EEccCCCccCHHHHHHhhhhhc
Q 024938 41 FECNICLDSAQDP--VVTLCGHLYCWPCIYKWLHVQT 75 (260)
Q Consensus 41 ~~C~ICld~~~~P--vvt~CGH~fC~~Ci~~wl~~~~ 75 (260)
+.|.||.-.+..- +-..|||..+..|..+|+..+.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC
Confidence 4566655444332 2246999999999999999764
No 135
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=50.96 E-value=29 Score=23.09 Aligned_cols=11 Identities=55% Similarity=1.358 Sum_probs=5.4
Q ss_pred HHHHHHHHHhh
Q 024938 249 LFCCLVLCLLL 259 (260)
Q Consensus 249 l~~~~~lcll~ 259 (260)
=||++++||||
T Consensus 34 nfcliliclll 44 (52)
T PF04272_consen 34 NFCLILICLLL 44 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 136
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=50.77 E-value=13 Score=28.98 Aligned_cols=35 Identities=14% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 59 GHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 59 GH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.-.||..||..+......... ....+.||.||...
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~-~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVL-EDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHh-cCCceECCCCCCee
Confidence 667999999988874321111 12346899998854
No 137
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.61 E-value=15 Score=25.62 Aligned_cols=44 Identities=23% Similarity=0.622 Sum_probs=28.2
Q ss_pred cccccccCCC-Cc-EEccCC--CccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 42 ECNICLDSAQ-DP-VVTLCG--HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 42 ~C~ICld~~~-~P-vvt~CG--H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
.|-.|...+. +. -..-|. .+||.+|....+. . .||.|...+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~-~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------G-VCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------C-cCcCCCCccccC
Confidence 4666665543 21 122243 3799999998875 3 899998877543
No 138
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=50.33 E-value=7.7 Score=26.23 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=9.7
Q ss_pred CcccccccccCCC
Q 024938 39 SFFECNICLDSAQ 51 (260)
Q Consensus 39 ~~~~C~ICld~~~ 51 (260)
+.|.||.|.+.+.
T Consensus 1 ~~f~CP~C~~~~~ 13 (54)
T PF05605_consen 1 DSFTCPYCGKGFS 13 (54)
T ss_pred CCcCCCCCCCccC
Confidence 3588999998544
No 139
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.65 E-value=13 Score=38.14 Aligned_cols=51 Identities=25% Similarity=0.585 Sum_probs=34.6
Q ss_pred cccccccCCCCcEEccCCC-ccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 42 ECNICLDSAQDPVVTLCGH-LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt~CGH-~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.|.||-....-...=.||| ..|..|..+...... +..... .||+|+..+..
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~---~~~~~~-~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELN---NRKCSN-ECPVCRREVET 53 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcc---cccccc-cCcccccceee
Confidence 5888888777766678888 788888877665432 112234 67888886643
No 140
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=46.67 E-value=9.7 Score=24.12 Aligned_cols=18 Identities=39% Similarity=0.491 Sum_probs=11.2
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 024938 240 KSLNRVSLFLFCCLVLCL 257 (260)
Q Consensus 240 ~~l~ri~~fl~~~~~lcl 257 (260)
--|||-++|++.+.|+-|
T Consensus 10 VELNRTSLY~GLllifvl 27 (37)
T PF02419_consen 10 VELNRTSLYWGLLLIFVL 27 (37)
T ss_dssp BE--CCHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHH
Confidence 357888888877766655
No 141
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.36 E-value=3.7 Score=37.32 Aligned_cols=46 Identities=30% Similarity=0.518 Sum_probs=35.8
Q ss_pred CcccccccccCCC------CcEEcc--------CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 39 SFFECNICLDSAQ------DPVVTL--------CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 39 ~~~~C~ICld~~~------~Pvvt~--------CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
....|.||...+. .|.++. |||..|..|+..-+.... . .||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--------~-~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--------I-KCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--------h-cCCcccce
Confidence 3467999987765 256666 999999999999887542 4 89999864
No 142
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.31 E-value=17 Score=36.26 Aligned_cols=46 Identities=30% Similarity=0.668 Sum_probs=37.1
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
+..-.|.||.+.. ..++++|. ...|+.+|+..++ .||.|...+..+
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~----------~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQE----------VCPLCHTYMKED 522 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhcc----------ccCCCchhhhcc
Confidence 3456899999888 66778887 5789999999875 899998877654
No 143
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=46.20 E-value=13 Score=24.90 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHh
Q 024938 247 LFLFCCLVLCLL 258 (260)
Q Consensus 247 ~fl~~~~~lcll 258 (260)
-||.|+++.||.
T Consensus 14 ~~lIC~Fl~~~~ 25 (54)
T PF06716_consen 14 GFLICLFLFCLV 25 (54)
T ss_pred HHHHHHHHHHHH
Confidence 355566666654
No 144
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=46.14 E-value=33 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.428 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhh
Q 024938 237 ELDKSLNRVSLFLFCCLVLCLLL 259 (260)
Q Consensus 237 ~~~~~l~ri~~fl~~~~~lcll~ 259 (260)
..||.+=.+.|++|+++++..|+
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhh
Confidence 35777777777777777776653
No 145
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.18 E-value=6.7 Score=37.59 Aligned_cols=46 Identities=26% Similarity=0.655 Sum_probs=37.0
Q ss_pred ccccccccCCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 41 FECNICLDSAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 41 ~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
-.|.||...+.+- -.+.|||.+...||.+|+.... +||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~----------kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR----------KLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH----------HhHHHHhhhhh
Confidence 4788998777542 3467999999999999999764 89999988753
No 146
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=44.17 E-value=29 Score=32.57 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=33.2
Q ss_pred cccccccccCCC--CcEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 40 FFECNICLDSAQ--DPVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 40 ~~~C~ICld~~~--~Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.-.|+||.+... +-.. .+||+..|+.|+....... . .||.||...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~---------~-~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGD---------G-RCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccC---------C-CCCccCCcc
Confidence 368999998763 2223 4699999999998877654 4 899998443
No 147
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=43.70 E-value=14 Score=28.30 Aligned_cols=37 Identities=35% Similarity=0.866 Sum_probs=29.3
Q ss_pred cccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.-.|-||...++.+ ||.||..|-++ + . .|.+|.+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk--k-----------G-iCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK--K-----------G-ICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc--c-----------C-cccccCCeec
Confidence 35899999888765 88999999754 1 4 8999988774
No 148
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=43.39 E-value=26 Score=34.23 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred HhHHhHHHHHhHHHHHHHHHHHHHHHh
Q 024938 232 RRQEMELDKSLNRVSLFLFCCLVLCLL 258 (260)
Q Consensus 232 r~~~~~~~~~l~ri~~fl~~~~~lcll 258 (260)
-|+.+|++++|+|+++|+++-.++..+
T Consensus 71 ~~~~~~~~~~~~rl~~~VllPtlla~~ 97 (434)
T PRK15178 71 ERRVQQAKQSLRRLFLYIALPLLVIML 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688999999999888877776553
No 149
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=43.32 E-value=4.7 Score=27.49 Aligned_cols=15 Identities=33% Similarity=1.178 Sum_probs=13.2
Q ss_pred cCCCccCHHHHHHhh
Q 024938 57 LCGHLYCWPCIYKWL 71 (260)
Q Consensus 57 ~CGH~fC~~Ci~~wl 71 (260)
.|++.||+.|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 699999999988874
No 150
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=42.60 E-value=17 Score=33.34 Aligned_cols=59 Identities=20% Similarity=0.417 Sum_probs=36.6
Q ss_pred CCcccccccccCCCC-c-------E-EccCCCccCHHHHH-HhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQD-P-------V-VTLCGHLYCWPCIY-KWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~-P-------v-vt~CGH~fC~~Ci~-~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...+.|.+|-..++. | + .++|...+|-+-+. .||-..-.-.-.++.++.||.|.+.+..
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 456899999977653 2 1 13566556655543 5776432112224567899999998864
No 151
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.15 E-value=8.4 Score=37.00 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=0.0
Q ss_pred cccccccccCCCC-------------c-EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 40 FFECNICLDSAQD-------------P-VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 40 ~~~C~ICld~~~~-------------P-vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...||+=+..+.- | |.+.|||.+-+. .|-..+. .+...+ .||+|+.+-.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~---~~~~~r-~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSD---RDPRSR-TCPLCRQVGP 339 (416)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccc---cccccc-cCCCccccCC
Confidence 4578877655432 3 456899987654 5654321 111346 9999987654
No 152
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=40.08 E-value=31 Score=37.35 Aligned_cols=49 Identities=33% Similarity=0.760 Sum_probs=33.9
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
....|.||-|.+. ++-|. .||--.|.+|.. +=. + ++.+ .||.||...+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr-~------eG~q-~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YER-K------DGNQ-SCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhh-h------cCCc-cCCccCCchhh
Confidence 3459999999974 34332 588889999983 222 1 1335 99999988763
No 153
>PLN02400 cellulose synthase
Probab=38.77 E-value=26 Score=37.91 Aligned_cols=50 Identities=32% Similarity=0.631 Sum_probs=34.2
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
....|.||-|.+. ++-+. .|+--.|++|.. + +.+ .+.+ .||-||...+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-Y-ERk------eGnq-~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-Y-ERK------DGTQ-CCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-e-ecc------cCCc-cCcccCCccccc
Confidence 3459999999974 34332 588889999983 2 211 1335 999999988643
No 154
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.74 E-value=32 Score=28.37 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=18.0
Q ss_pred CCCcccccccccC-CCCcEEccCCCccCHHHHHH
Q 024938 37 DGSFFECNICLDS-AQDPVVTLCGHLYCWPCIYK 69 (260)
Q Consensus 37 ~~~~~~C~ICld~-~~~Pvvt~CGH~fC~~Ci~~ 69 (260)
..++-.|-||+.. |.|. |||. |..|-.+
T Consensus 62 v~ddatC~IC~KTKFADG----~GH~-C~YCq~r 90 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADG----CGHN-CSYCQTR 90 (169)
T ss_pred cCcCcchhhhhhcccccc----cCcc-cchhhhh
Confidence 3466799999954 5554 8884 4455443
No 155
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.46 E-value=16 Score=21.28 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=3.8
Q ss_pred ccccccCC
Q 024938 43 CNICLDSA 50 (260)
Q Consensus 43 C~ICld~~ 50 (260)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 156
>PLN02195 cellulose synthase A
Probab=38.03 E-value=33 Score=36.73 Aligned_cols=48 Identities=17% Similarity=0.440 Sum_probs=33.8
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....|.||-|.+. ++-+. .|+--.|.+|.. +=. + ++.+ .||.|+...+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer-~------eg~q-~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEI-K------EGRK-VCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh-hhh-h------cCCc-cCCccCCccc
Confidence 4458999999764 34442 599889999983 222 1 1335 9999999887
No 157
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.76 E-value=16 Score=28.00 Aligned_cols=14 Identities=21% Similarity=0.847 Sum_probs=12.3
Q ss_pred ccCHHHHHHhhhhh
Q 024938 61 LYCWPCIYKWLHVQ 74 (260)
Q Consensus 61 ~fC~~Ci~~wl~~~ 74 (260)
.||..|+..|....
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999865
No 158
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=35.38 E-value=39 Score=36.51 Aligned_cols=49 Identities=29% Similarity=0.688 Sum_probs=34.3
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
....|.||-|.+. ++-+. .|+--.|.+|..- =. + .+.+ .||.|+.....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey-e~-~------~g~~-~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY-ER-S------EGNQ-CCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhh-hh-h------cCCc-cCCccCCchhh
Confidence 4568999999874 34432 5888899999832 22 1 1335 99999988763
No 159
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=34.44 E-value=20 Score=32.59 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=33.8
Q ss_pred cccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 40 FFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
.+.|||=......|++ ..|||.|=.+-|...+... ....||+-
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~--------~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE--------ITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC--------ceeecccc
Confidence 5789998888888876 6799999999998888642 23388874
No 160
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.88 E-value=39 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=20.8
Q ss_pred ccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 61 LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 61 ~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
.||..|-..-+. +||.|..++.-+..+.
T Consensus 29 afcskcgeati~-------------qcp~csasirgd~~ve 56 (160)
T COG4306 29 AFCSKCGEATIT-------------QCPICSASIRGDYYVE 56 (160)
T ss_pred HHHhhhchHHHh-------------cCCccCCcccccceee
Confidence 588888766553 8999999997665443
No 161
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=15 Score=31.29 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=14.2
Q ss_pred CcccccccccCCCCc---EEccCCCccC
Q 024938 39 SFFECNICLDSAQDP---VVTLCGHLYC 63 (260)
Q Consensus 39 ~~~~C~ICld~~~~P---vvt~CGH~fC 63 (260)
+.-+|.||+|.+... ..++|-.+|+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEee
Confidence 345777777776542 2356655443
No 162
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=32.70 E-value=28 Score=30.43 Aligned_cols=24 Identities=33% Similarity=0.725 Sum_probs=17.9
Q ss_pred CCCcEEccCC----CccCHHHHHHhhhh
Q 024938 50 AQDPVVTLCG----HLYCWPCIYKWLHV 73 (260)
Q Consensus 50 ~~~Pvvt~CG----H~fC~~Ci~~wl~~ 73 (260)
+.+|.+..|. |.||+.++..||..
T Consensus 151 f~~p~~~~C~~gHfHHyCs~HV~~WL~~ 178 (199)
T PF12132_consen 151 FVKPSVDECEYGHFHHYCSQHVNSWLNN 178 (199)
T ss_pred ccCCCCCCCCCCCcChhhHHHHHHHHHH
Confidence 4455555565 68999999999973
No 163
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=31.22 E-value=17 Score=36.71 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=25.8
Q ss_pred CcccccccccC-CCCcE-----E--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 39 SFFECNICLDS-AQDPV-----V--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 39 ~~~~C~ICld~-~~~Pv-----v--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
..+.|.||... ..-|- . ..||+.||..|+.+-- . .||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s------------~-~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKS------------P-CCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhccC------------C-CCCchH
Confidence 46788899422 11232 1 2599999999986521 3 699993
No 164
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=31.00 E-value=68 Score=19.24 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHhhC
Q 024938 242 LNRVSLFLFCCLVLCLLLF 260 (260)
Q Consensus 242 l~ri~~fl~~~~~lcll~f 260 (260)
+||+.+-++..+++-++++
T Consensus 9 ~Hr~~l~~l~~v~l~ll~~ 27 (30)
T PF08525_consen 9 LHRRALIALSAVVLVLLLW 27 (30)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566666666666556553
No 165
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=30.59 E-value=35 Score=21.47 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHhh
Q 024938 238 LDKSLNRVSLFLFCCLVLCLLL 259 (260)
Q Consensus 238 ~~~~l~ri~~fl~~~~~lcll~ 259 (260)
-|.-|+++.+||+++.++..++
T Consensus 3 sD~qL~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 3 SDVQLYTLANFLGVAAMVLIVL 24 (35)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3667999999999998876654
No 166
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.28 E-value=41 Score=25.62 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHh
Q 024938 245 VSLFLFCCLVLCLL 258 (260)
Q Consensus 245 i~~fl~~~~~lcll 258 (260)
+|||+.|.+++|++
T Consensus 35 m~~lvI~~iFil~V 48 (94)
T PF05393_consen 35 MWFLVICGIFILLV 48 (94)
T ss_pred hhHHHHHHHHHHHH
Confidence 45666666666653
No 167
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=29.72 E-value=25 Score=33.69 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=25.9
Q ss_pred CCCCcccccccc-cCCCCcEEccCCCccCHHHHH
Q 024938 36 KDGSFFECNICL-DSAQDPVVTLCGHLYCWPCIY 68 (260)
Q Consensus 36 ~~~~~~~C~ICl-d~~~~Pvvt~CGH~fC~~Ci~ 68 (260)
..+....|.=|. .....-..++||..||..||-
T Consensus 35 ~~~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 35 IENGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cccCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 345678999988 555566788999999999983
No 168
>PHA02849 putative transmembrane protein; Provisional
Probab=29.65 E-value=41 Score=25.01 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhC
Q 024938 245 VSLFLFCCLVLCLLLF 260 (260)
Q Consensus 245 i~~fl~~~~~lcll~f 260 (260)
|++|+++.+|+|.||+
T Consensus 20 i~v~v~vI~i~~flLl 35 (82)
T PHA02849 20 ILVFVLVISFLAFMLL 35 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888777777653
No 169
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=29.18 E-value=8.3 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=16.9
Q ss_pred ccccc--cccCCC-----Cc--EEcc-CCCccCHHHHHHh
Q 024938 41 FECNI--CLDSAQ-----DP--VVTL-CGHLYCWPCIYKW 70 (260)
Q Consensus 41 ~~C~I--Cld~~~-----~P--vvt~-CGH~fC~~Ci~~w 70 (260)
.-||- |...+. .. +.-+ |++.||+.|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 36655 665543 12 3334 9999999998877
No 170
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.49 E-value=44 Score=34.67 Aligned_cols=55 Identities=25% Similarity=0.512 Sum_probs=36.0
Q ss_pred CCcccccccccCCCCc----------EEccCCCcc--------------------CHHHHHHhhhhhcCCccccccCcCC
Q 024938 38 GSFFECNICLDSAQDP----------VVTLCGHLY--------------------CWPCIYKWLHVQTSSLDADEQQQNC 87 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P----------vvt~CGH~f--------------------C~~Ci~~wl~~~~~s~~~~~~~~~C 87 (260)
.+.-.|.-|++.+.|| .-|.||..| |-.|.+++-+... ..=..+...|
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~n--RRfHAQp~aC 176 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLN--RRFHAQPIAC 176 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccc--cccccccccC
Confidence 4566999999988876 235688776 9999988765321 0001123499
Q ss_pred CCccccc
Q 024938 88 PVCKANI 94 (260)
Q Consensus 88 PvCr~~v 94 (260)
|.|.=.+
T Consensus 177 p~CGP~~ 183 (750)
T COG0068 177 PKCGPHL 183 (750)
T ss_pred cccCCCe
Confidence 9996543
No 171
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=28.16 E-value=40 Score=29.81 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhC
Q 024938 245 VSLFLFCCLVLCLLLF 260 (260)
Q Consensus 245 i~~fl~~~~~lcll~f 260 (260)
.+|.++++|++|-|||
T Consensus 133 ClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566778888898887
No 172
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.02 E-value=46 Score=31.37 Aligned_cols=40 Identities=25% Similarity=0.685 Sum_probs=25.6
Q ss_pred cccccccCCCC-cEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 42 ECNICLDSAQD-PVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 42 ~C~ICld~~~~-Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
.|-.|.+.... ++. -.|.+.||.+|= .+++..- . .||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesL--------h-~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESL--------H-NCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccch-HHHHhhh--------h-cCCCcC
Confidence 48888655443 333 369999999994 3333221 3 899995
No 173
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=27.91 E-value=40 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=13.4
Q ss_pred ccccccCCCC--cEEccCCCccCHHH
Q 024938 43 CNICLDSAQD--PVVTLCGHLYCWPC 66 (260)
Q Consensus 43 C~ICld~~~~--Pvvt~CGH~fC~~C 66 (260)
|..|.+.+.+ .++..=+..|+..|
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C 27 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC 27 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC
Confidence 6777777665 33333445555555
No 174
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=27.86 E-value=11 Score=33.90 Aligned_cols=16 Identities=50% Similarity=1.090 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 024938 244 RVSLFLFCCLVLCLLL 259 (260)
Q Consensus 244 ri~~fl~~~~~lcll~ 259 (260)
|.++++++.|+||||+
T Consensus 73 RTklyV~~sV~~CLl~ 88 (238)
T PF07092_consen 73 RTKLYVFLSVLLCLLL 88 (238)
T ss_pred eeEEEeeHHHHHHHHH
Confidence 5677777888888875
No 175
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.80 E-value=52 Score=34.35 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=24.3
Q ss_pred cccccccCCCCcEEc--cCCCccCHHHHHHhhhhhc
Q 024938 42 ECNICLDSAQDPVVT--LCGHLYCWPCIYKWLHVQT 75 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt--~CGH~fC~~Ci~~wl~~~~ 75 (260)
.|.+|...+..-.+- -|||.-+-.|++.|+...+
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s 816 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKAS 816 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCC
Confidence 566666655432221 4999999999999998654
No 176
>PHA02975 hypothetical protein; Provisional
Probab=27.70 E-value=44 Score=24.22 Aligned_cols=21 Identities=29% Similarity=0.630 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhC
Q 024938 240 KSLNRVSLFLFCCLVLCLLLF 260 (260)
Q Consensus 240 ~~l~ri~~fl~~~~~lcll~f 260 (260)
++...+++++++.+++|+++|
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~ 60 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVF 60 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 566666666667777776543
No 177
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.89 E-value=14 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=17.6
Q ss_pred CcccccccccCCCCc---EE-ccCCCccCHHHHHHhhh
Q 024938 39 SFFECNICLDSAQDP---VV-TLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 39 ~~~~C~ICld~~~~P---vv-t~CGH~fC~~Ci~~wl~ 72 (260)
+...|.+|...|.-- .. -.||++||..|......
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 456899999888421 11 36999999999866553
No 178
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.73 E-value=32 Score=28.19 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=13.9
Q ss_pred ccccCCCCcEEccCCCccCHH
Q 024938 45 ICLDSAQDPVVTLCGHLYCWP 65 (260)
Q Consensus 45 ICld~~~~Pvvt~CGH~fC~~ 65 (260)
||.+.-..-+...|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 555554443446799999975
No 179
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=26.49 E-value=51 Score=31.39 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=10.9
Q ss_pred CcccccccccCCCC
Q 024938 39 SFFECNICLDSAQD 52 (260)
Q Consensus 39 ~~~~C~ICld~~~~ 52 (260)
.+..||+|.|.+.-
T Consensus 14 l~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 14 LGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccCcccc
Confidence 45689999998764
No 180
>PHA02657 hypothetical protein; Provisional
Probab=26.44 E-value=60 Score=24.62 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHHHHHhh
Q 024938 241 SLNRVSLFLFCCLVLCLLL 259 (260)
Q Consensus 241 ~l~ri~~fl~~~~~lcll~ 259 (260)
|.--|.+|+++..|||.||
T Consensus 26 ~imVitvfv~vI~il~flL 44 (95)
T PHA02657 26 SILVFTIFIFVVCILIYLL 44 (95)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4555788888888887754
No 181
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=57 Score=29.76 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=31.1
Q ss_pred CCCCCccccccccc-----CCCCcEEccCCCccCHHHHHHhhh
Q 024938 35 EKDGSFFECNICLD-----SAQDPVVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 35 ~~~~~~~~C~ICld-----~~~~Pvvt~CGH~fC~~Ci~~wl~ 72 (260)
........|++|.. ..+..+...|||.||+.|.+-|..
T Consensus 90 S~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 90 SRFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 45667789999988 444567789999999999999987
No 182
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=26.03 E-value=69 Score=29.59 Aligned_cols=46 Identities=26% Similarity=0.553 Sum_probs=34.1
Q ss_pred CCcccccccccCCCCcEEcc----CC--CccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 38 GSFFECNICLDSAQDPVVTL----CG--HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~----CG--H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
+....||+|.......++.- =| -+-|.-|...|..+.. +|-.|...
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~----------KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRV----------KCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHH----------Hhcccccc
Confidence 55679999999888765532 22 2459999999999864 89988554
No 183
>PHA02844 putative transmembrane protein; Provisional
Probab=25.30 E-value=53 Score=24.17 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q 024938 245 VSLFLFCCLVLCLL 258 (260)
Q Consensus 245 i~~fl~~~~~lcll 258 (260)
+++++++++++|++
T Consensus 49 ~~~ii~i~~v~~~~ 62 (75)
T PHA02844 49 KIWILTIIFVVFAT 62 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 184
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.30 E-value=27 Score=32.47 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=37.2
Q ss_pred CCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 38 GSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...-.|-||...+.-|... .|+|-||..|...|..... .|+.|+..+.
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~----------~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGN----------DCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhh----------ccchhhcCcC
Confidence 3456788888888776554 4999999999999998653 8888877664
No 185
>PF15616 TerY-C: TerY-C metal binding domain
Probab=24.41 E-value=40 Score=27.56 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=33.0
Q ss_pred CCCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 33 VPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+.+.+.-.||-|-....-.+ -.||+++|+.= .+.. +||-|......
T Consensus 70 ntseL~g~PgCP~CGn~~~fa~-C~CGkl~Ci~g--------------~~~~-~CPwCg~~g~~ 117 (131)
T PF15616_consen 70 NTSELIGAPGCPHCGNQYAFAV-CGCGKLFCIDG--------------EGEV-TCPWCGNEGSF 117 (131)
T ss_pred ehHHhcCCCCCCCCcChhcEEE-ecCCCEEEeCC--------------CCCE-ECCCCCCeeee
Confidence 3445556689999998765433 37999999741 1224 99999887654
No 186
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=23.68 E-value=33 Score=30.81 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=9.8
Q ss_pred CcccccccccCCCCc
Q 024938 39 SFFECNICLDSAQDP 53 (260)
Q Consensus 39 ~~~~C~ICld~~~~P 53 (260)
-.|.|+||+..+..|
T Consensus 259 ~GfvCsVCLsvfc~p 273 (296)
T COG5242 259 LGFVCSVCLSVFCRP 273 (296)
T ss_pred EeeehhhhheeecCC
Confidence 356777777766554
No 187
>PF07280 DUF1443: Protein of unknown function (DUF1443); InterPro: IPR009903 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf110; it is a family of uncharacterised viral proteins.
Probab=23.33 E-value=66 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.928 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHh
Q 024938 245 VSLFLFCCLVLCLL 258 (260)
Q Consensus 245 i~~fl~~~~~lcll 258 (260)
|.+|+.|.++|.+|
T Consensus 4 ivifv~~~~~l~~L 17 (43)
T PF07280_consen 4 IVIFVVCVYVLYIL 17 (43)
T ss_pred ehHHHHHHHHHHHH
Confidence 45666666666654
No 188
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.27 E-value=54 Score=21.77 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=22.0
Q ss_pred ccccccccCCCC----cEEccCCCccCHHHHHHhhh
Q 024938 41 FECNICLDSAQD----PVVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 41 ~~C~ICld~~~~----Pvvt~CGH~fC~~Ci~~wl~ 72 (260)
..|.+|...|.- ..-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 467888766543 12246999999999866544
No 189
>MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.86 E-value=63 Score=21.60 Aligned_cols=14 Identities=29% Similarity=0.429 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhh
Q 024938 246 SLFLFCCLVLCLLL 259 (260)
Q Consensus 246 ~~fl~~~~~lcll~ 259 (260)
|+++++.+.+++++
T Consensus 9 W~~l~~~~~~~~~~ 22 (52)
T MTH00186 9 WALLFIMIWLLIFL 22 (52)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 190
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA02898 virion envelope protein; Provisional
Probab=22.52 E-value=88 Score=23.85 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhC
Q 024938 238 LDKSLNRVSLFLFCCLVLCLLLF 260 (260)
Q Consensus 238 ~~~~l~ri~~fl~~~~~lcll~f 260 (260)
+=|.|+-|+|.|+...+|.+++|
T Consensus 43 ~wRalSii~FIlgivl~lG~~if 65 (92)
T PHA02898 43 ALRSISIISFILAIILILGIIFF 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999876
No 192
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=22.44 E-value=43 Score=29.06 Aligned_cols=39 Identities=31% Similarity=0.716 Sum_probs=26.2
Q ss_pred CcccccccccC-CCCc-----EE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 39 SFFECNICLDS-AQDP-----VV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 39 ~~~~C~ICld~-~~~P-----vv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
..+.|-||.+. +.-| ++ -.|+-.|+..|..+ . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------------~-~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------------K-SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------------C-CCCCcHh
Confidence 35889999853 2222 22 25999999999752 2 8999954
No 193
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.42 E-value=71 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.595 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhh
Q 024938 246 SLFLFCCLVLCLLL 259 (260)
Q Consensus 246 ~~fl~~~~~lcll~ 259 (260)
|++++..+++++++
T Consensus 9 W~~l~~~f~~~~~~ 22 (32)
T MTH00158 9 WLILFILFLITFIL 22 (32)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 194
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=21.96 E-value=86 Score=29.52 Aligned_cols=46 Identities=9% Similarity=-0.154 Sum_probs=33.7
Q ss_pred CCCcccccccccCCCCcEEccCCC-ccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGH-LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH-~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+-..++|-.|..-...-+..+|+| .||..|.. +... . .||+|...+
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~---------~-~~~~c~~~~ 386 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASAS---------P-TSSTCDHND 386 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhh--cccC---------C-ccccccccc
Confidence 334678888888777767779998 68999986 3322 5 999996644
No 195
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.88 E-value=77 Score=20.69 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhh
Q 024938 245 VSLFLFCCLVLCLLL 259 (260)
Q Consensus 245 i~~fl~~~~~lcll~ 259 (260)
++.|+..|.++|+++
T Consensus 15 ~lVglv~i~iva~~i 29 (43)
T PF08114_consen 15 CLVGLVGIGIVALFI 29 (43)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777777765
No 196
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.85 E-value=25 Score=23.68 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=6.6
Q ss_pred CCCCcccccccc
Q 024938 86 NCPVCKANISVA 97 (260)
Q Consensus 86 ~CPvCr~~v~~~ 97 (260)
.||+|..++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999998754
No 197
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=21.55 E-value=35 Score=31.18 Aligned_cols=60 Identities=23% Similarity=0.369 Sum_probs=37.6
Q ss_pred ccccccccCCC--CcEEc-----cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 41 FECNICLDSAQ--DPVVT-----LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 41 ~~C~ICld~~~--~Pvvt-----~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
..|.+|.+.+. +...+ .|+-+.+..|+.+.+.....-.-..... .||.|+..+.-.+++.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg-~cp~C~~~~~w~~lv~ 249 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEG-MCPKCEKFLSWTTLVD 249 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCC-CCCchhceeeHHHHHH
Confidence 58999998773 33333 4888888999988443221110011234 8999999877666655
No 198
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=21.53 E-value=15 Score=27.84 Aligned_cols=38 Identities=34% Similarity=0.862 Sum_probs=29.6
Q ss_pred cccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...|-||...++.| |-.||..|.+. + . .|.+|.+.+..
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY~--K-----------g-iCAMCGKki~n 91 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAYK--K-----------G-ICAMCGKKILN 91 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhhh--h-----------h-HHHHhhhHhhc
Confidence 35899999999987 76799999865 1 3 89999776643
No 199
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=21.50 E-value=82 Score=20.70 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=25.2
Q ss_pred CCcccccccccCCCCc-EEccCCCccCHHHHHH
Q 024938 38 GSFFECNICLDSAQDP-VVTLCGHLYCWPCIYK 69 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~ 69 (260)
.+.|.|..|...+.+. ....=|..||..|..+
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 3678999999888765 5566778999999765
No 200
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.03 E-value=1.1e+02 Score=28.89 Aligned_cols=58 Identities=19% Similarity=0.483 Sum_probs=32.8
Q ss_pred CCCcccccccccCCC--------C---------c--EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 37 DGSFFECNICLDSAQ--------D---------P--VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 37 ~~~~~~C~ICld~~~--------~---------P--vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...+-+||+|+..-. + | ...+|||.--..=..-|....-.-....-+. .||.|-..+.
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a-~CPFC~~~L~ 414 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHA-ACPFCATQLA 414 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccc-cCcchhhhhc
Confidence 334679999986531 1 1 2347999755555555665321111111224 8999977664
No 201
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.92 E-value=62 Score=28.81 Aligned_cols=22 Identities=32% Similarity=0.831 Sum_probs=15.6
Q ss_pred cccccccCCCCcEEccCCCccCHHHHHHhh
Q 024938 42 ECNICLDSAQDPVVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl 71 (260)
.|+||. ....+.||..|+..-+
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~~L 22 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNNRL 22 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHHHH
Confidence 488888 3456678888886543
No 202
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.92 E-value=59 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=18.3
Q ss_pred cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 62 YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 62 fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
-|..|-...-.+. + .||+||+....
T Consensus 196 ~C~sC~qqIHRNA---------P-iCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHRNA---------P-ICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhcCC---------C-CCccccccccc
Confidence 4888987655544 5 99999987643
No 203
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.85 E-value=29 Score=36.45 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=23.7
Q ss_pred cccccccccCCCCc--EEccCCCccCHHHHHHhh
Q 024938 40 FFECNICLDSAQDP--VVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 40 ~~~C~ICld~~~~P--vvt~CGH~fC~~Ci~~wl 71 (260)
.-.|-.|.....+- +-..||+.+|..|+..|.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 45677777665542 334799999999999995
No 204
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.64 E-value=41 Score=19.43 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.3
Q ss_pred CCCCcccccccc
Q 024938 86 NCPVCKANISVA 97 (260)
Q Consensus 86 ~CPvCr~~v~~~ 97 (260)
.||+|...+...
T Consensus 3 ~CPiC~~~v~~~ 14 (26)
T smart00734 3 QCPVCFREVPEN 14 (26)
T ss_pred cCCCCcCcccHH
Confidence 799998887543
No 205
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.64 E-value=73 Score=26.82 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=22.7
Q ss_pred CCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 59 GHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 59 GH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
.+.||..|=.+-+. .||.|..+|.-+-.+
T Consensus 27 ~~~fC~kCG~~tI~-------------~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 27 REKFCSKCGAKTIT-------------SCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHHHHhhHHHHH-------------HCcCCCCCCCCceec
Confidence 35699999988775 899999998755433
No 206
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=43 Score=32.45 Aligned_cols=33 Identities=24% Similarity=0.604 Sum_probs=24.4
Q ss_pred CcccccccccCCCCc------EEccCCCccCHHHHHHhh
Q 024938 39 SFFECNICLDSAQDP------VVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 39 ~~~~C~ICld~~~~P------vvt~CGH~fC~~Ci~~wl 71 (260)
..-.||-|.-.+... +-+.|||.|||-|-....
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 456899998777542 457899999999975533
No 207
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=20.49 E-value=89 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=15.8
Q ss_pred hhHhHHhH-HHHHhHHHHHHHHHHHHHHHhh
Q 024938 230 RIRRQEME-LDKSLNRVSLFLFCCLVLCLLL 259 (260)
Q Consensus 230 r~r~~~~~-~~~~l~ri~~fl~~~~~lcll~ 259 (260)
+.||++|+ +..-+..|-+=.+..|+|++.+
T Consensus 17 ~ERk~~~~e~~~kv~tVVlP~l~~~~~~Ivv 47 (56)
T PF15012_consen 17 KERKKEMQEAQQKVFTVVLPTLAAVFLFIVV 47 (56)
T ss_pred HHHHHHHHHHHHhheeEehhHHHHHHHHHhh
Confidence 55888865 3334554544444444444443
No 208
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=20.22 E-value=1.1e+02 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.245 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 024938 238 LDKSLNRVSLFLFCCLVLC 256 (260)
Q Consensus 238 ~~~~l~ri~~fl~~~~~lc 256 (260)
.|+.|+|+-.++.+.+++.
T Consensus 48 ~~~~L~k~T~il~~~F~i~ 66 (76)
T PRK06870 48 AENFLSRLTAVLAVLFFVL 66 (76)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 6899999977766655443
No 209
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=20.20 E-value=1.2e+02 Score=21.99 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=22.5
Q ss_pred CcccccccccC-CCCcEEccCC----CccC-HHHHHHhhhhh
Q 024938 39 SFFECNICLDS-AQDPVVTLCG----HLYC-WPCIYKWLHVQ 74 (260)
Q Consensus 39 ~~~~C~ICld~-~~~Pvvt~CG----H~fC-~~Ci~~wl~~~ 74 (260)
....|-+|... ..+...++=| +.|| ..|..+|....
T Consensus 10 ~~~sC~vC~KEIPl~~a~t~E~~eYV~hFCGLeCY~~w~a~~ 51 (70)
T PF11809_consen 10 KTTSCCVCCKEIPLDAAFTPEAAEYVEHFCGLECYQRWQARA 51 (70)
T ss_pred ccchHHHHhhhCChhhccCcchHHHHHHHhhHHHHHHHHHHH
Confidence 44688888744 4455555432 2233 68999999855
No 210
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.04 E-value=65 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 024938 247 LFLFCCLVLCLL 258 (260)
Q Consensus 247 ~fl~~~~~lcll 258 (260)
+.+.+.++.||+
T Consensus 7 iili~iv~~Cl~ 18 (47)
T PRK10299 7 VVLVVVVLACLL 18 (47)
T ss_pred hHHHHHHHHHHH
Confidence 333344444443
Done!