Query 024938
Match_columns 260
No_of_seqs 245 out of 1603
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.5 1.2E-14 4E-19 104.7 7.3 63 32-104 7-70 (72)
2 1t1h_A Gspef-atpub14, armadill 99.5 1.5E-14 5E-19 105.4 5.0 61 35-104 3-63 (78)
3 2ecw_A Tripartite motif-contai 99.5 1.1E-13 3.7E-18 101.5 8.3 70 33-106 12-81 (85)
4 2d8t_A Dactylidin, ring finger 99.5 2.8E-14 9.4E-19 102.4 4.3 57 35-101 10-66 (71)
5 2yur_A Retinoblastoma-binding 99.5 8.5E-14 2.9E-18 100.8 6.9 55 33-95 8-63 (74)
6 2kr4_A Ubiquitin conjugation f 99.5 6.2E-14 2.1E-18 104.7 5.9 60 35-104 9-68 (85)
7 3ng2_A RNF4, snurf, ring finge 99.5 2.1E-14 7.2E-19 102.4 3.2 58 36-103 6-70 (71)
8 2ecy_A TNF receptor-associated 99.5 4.6E-14 1.6E-18 99.7 4.9 57 34-99 9-65 (66)
9 3ztg_A E3 ubiquitin-protein li 99.5 6.5E-14 2.2E-18 105.1 5.8 64 33-104 6-71 (92)
10 2ysl_A Tripartite motif-contai 99.5 9.1E-14 3.1E-18 99.7 6.1 59 34-99 14-72 (73)
11 2egp_A Tripartite motif-contai 99.5 3.1E-14 1.1E-18 103.5 3.7 70 34-106 6-75 (79)
12 2ecv_A Tripartite motif-contai 99.4 1.6E-13 5.5E-18 100.6 7.2 69 34-106 13-81 (85)
13 2kre_A Ubiquitin conjugation f 99.4 6.5E-14 2.2E-18 107.8 5.1 60 35-104 24-83 (100)
14 1wgm_A Ubiquitin conjugation f 99.4 1.2E-13 4.3E-18 105.8 5.9 60 35-104 17-77 (98)
15 3fl2_A E3 ubiquitin-protein li 99.4 4.9E-15 1.7E-19 117.5 -2.4 58 36-102 48-106 (124)
16 2csy_A Zinc finger protein 183 99.4 1.8E-13 6.2E-18 100.4 6.1 51 35-95 10-60 (81)
17 2xeu_A Ring finger protein 4; 99.4 5.8E-14 2E-18 97.8 2.7 55 39-103 2-63 (64)
18 3lrq_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 106.2 4.1 60 36-104 18-78 (100)
19 2ct2_A Tripartite motif protei 99.4 7E-13 2.4E-17 98.1 8.0 60 33-99 8-71 (88)
20 2ysj_A Tripartite motif-contai 99.4 6.8E-13 2.3E-17 92.7 6.7 51 33-90 13-63 (63)
21 2ect_A Ring finger protein 126 99.4 3.4E-13 1.2E-17 98.0 5.0 58 34-101 9-69 (78)
22 2ea6_A Ring finger protein 4; 99.4 2.7E-13 9.3E-18 95.8 4.1 53 34-96 9-68 (69)
23 1g25_A CDK-activating kinase a 99.4 3E-13 1E-17 95.2 3.7 57 39-104 2-63 (65)
24 2y43_A E3 ubiquitin-protein li 99.3 9.8E-14 3.3E-18 105.7 0.5 59 36-104 18-77 (99)
25 2ecn_A Ring finger protein 141 99.3 3.7E-13 1.3E-17 95.9 3.5 55 34-99 9-63 (70)
26 1z6u_A NP95-like ring finger p 99.3 3.1E-14 1.1E-18 117.1 -3.0 58 37-103 75-133 (150)
27 3hct_A TNF receptor-associated 99.3 1E-12 3.5E-17 103.3 5.6 60 34-102 12-71 (118)
28 2kiz_A E3 ubiquitin-protein li 99.3 2.1E-12 7.2E-17 91.6 6.1 52 35-96 9-63 (69)
29 4ayc_A E3 ubiquitin-protein li 99.3 4.7E-13 1.6E-17 108.1 2.9 49 38-96 51-99 (138)
30 2ecj_A Tripartite motif-contai 99.3 1.8E-12 6.2E-17 88.6 5.0 51 33-90 8-58 (58)
31 2yu4_A E3 SUMO-protein ligase 99.3 1.8E-12 6E-17 98.3 5.2 64 37-104 4-71 (94)
32 2c2l_A CHIP, carboxy terminus 99.3 1.6E-12 5.5E-17 114.8 5.7 60 36-104 204-263 (281)
33 1jm7_A BRCA1, breast cancer ty 99.3 9.9E-13 3.4E-17 101.7 3.5 60 38-104 19-78 (112)
34 2ckl_A Polycomb group ring fin 99.3 1.3E-12 4.6E-17 100.9 3.6 52 36-97 11-63 (108)
35 2ep4_A Ring finger protein 24; 99.3 4.4E-12 1.5E-16 91.2 5.5 53 34-96 9-64 (74)
36 3l11_A E3 ubiquitin-protein li 99.3 9.9E-13 3.4E-17 102.7 2.3 53 35-96 10-62 (115)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 1.5E-12 5.2E-17 102.8 3.3 58 38-105 5-69 (133)
38 1rmd_A RAG1; V(D)J recombinati 99.3 1.2E-12 4.1E-17 102.4 2.4 57 36-101 19-75 (116)
39 1iym_A EL5; ring-H2 finger, ub 99.3 4.1E-12 1.4E-16 86.1 4.5 48 38-95 3-54 (55)
40 2ecm_A Ring finger and CHY zin 99.3 3.5E-12 1.2E-16 86.3 4.0 47 39-95 4-54 (55)
41 2ckl_B Ubiquitin ligase protei 99.2 1.8E-12 6.1E-17 107.5 2.8 52 36-96 50-102 (165)
42 1x4j_A Ring finger protein 38; 99.2 3.4E-12 1.2E-16 92.2 3.5 50 37-96 20-72 (75)
43 2f42_A STIP1 homology and U-bo 99.2 4.9E-12 1.7E-16 107.0 5.0 61 35-104 101-161 (179)
44 2l0b_A E3 ubiquitin-protein li 99.2 5.4E-12 1.8E-16 94.9 4.7 51 36-96 36-89 (91)
45 1chc_A Equine herpes virus-1 r 99.2 1E-11 3.5E-16 87.7 5.7 47 39-95 4-51 (68)
46 1jm7_B BARD1, BRCA1-associated 99.2 3.1E-12 1.1E-16 100.4 1.8 55 37-103 19-74 (117)
47 1bor_A Transcription factor PM 99.2 3.3E-12 1.1E-16 87.7 1.0 47 37-96 3-49 (56)
48 3hcs_A TNF receptor-associated 99.2 1.7E-11 5.9E-16 101.9 5.2 60 34-102 12-71 (170)
49 3knv_A TNF receptor-associated 99.2 3.8E-12 1.3E-16 103.6 1.2 52 35-95 26-77 (141)
50 4ap4_A E3 ubiquitin ligase RNF 99.2 8.5E-12 2.9E-16 98.5 2.4 58 37-104 69-133 (133)
51 1e4u_A Transcriptional repress 99.2 2.8E-11 9.7E-16 88.9 4.9 56 35-99 6-65 (78)
52 1v87_A Deltex protein 2; ring- 99.1 2.8E-11 9.4E-16 94.1 3.8 52 40-96 25-94 (114)
53 2ecl_A Ring-box protein 2; RNF 99.1 7.8E-11 2.7E-15 86.7 5.1 50 39-98 14-78 (81)
54 2bay_A PRE-mRNA splicing facto 99.1 6E-11 2E-15 83.2 4.1 55 40-104 3-58 (61)
55 3htk_C E3 SUMO-protein ligase 99.0 1.4E-10 4.9E-15 103.0 4.8 61 36-104 177-240 (267)
56 2y1n_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 108.9 4.6 53 39-100 331-383 (389)
57 4ic3_A E3 ubiquitin-protein li 99.0 1.2E-10 4.2E-15 84.2 2.3 46 37-96 21-67 (74)
58 2vje_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 80.0 3.0 54 38-103 6-62 (64)
59 3dpl_R Ring-box protein 1; ubi 98.9 5.5E-10 1.9E-14 86.7 4.1 47 40-96 37-101 (106)
60 2vje_B MDM4 protein; proto-onc 98.9 5.3E-10 1.8E-14 78.5 2.8 47 39-95 6-55 (63)
61 2ecg_A Baculoviral IAP repeat- 98.9 4.5E-10 1.6E-14 81.3 2.4 45 38-96 23-68 (75)
62 2ea5_A Cell growth regulator w 98.8 4.3E-09 1.5E-13 75.0 4.9 46 37-96 12-58 (68)
63 2d8s_A Cellular modulator of i 98.8 8.3E-09 2.8E-13 76.0 6.4 51 38-96 13-70 (80)
64 2yho_A E3 ubiquitin-protein li 98.7 2.1E-09 7.2E-14 78.9 1.8 45 38-96 16-61 (79)
65 4a0k_B E3 ubiquitin-protein li 98.7 2.2E-09 7.4E-14 84.8 0.2 47 40-96 48-112 (117)
66 1wim_A KIAA0161 protein; ring 98.7 4.1E-09 1.4E-13 79.3 1.6 61 38-101 3-71 (94)
67 3t6p_A Baculoviral IAP repeat- 98.6 1.4E-08 4.9E-13 93.8 2.2 45 38-96 293-338 (345)
68 2ct0_A Non-SMC element 1 homol 98.4 5.2E-07 1.8E-11 65.4 6.0 49 39-95 14-63 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.2 1.6E-06 5.5E-11 60.2 4.2 50 38-95 4-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.1 1.2E-06 4.3E-11 80.5 3.6 60 36-96 304-373 (381)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.4E-05 4.6E-10 60.9 3.5 48 42-98 3-51 (101)
72 3m62_A Ubiquitin conjugation f 96.6 0.0014 4.9E-08 67.3 4.6 59 36-104 887-946 (968)
73 3nw0_A Non-structural maintena 96.6 0.002 6.8E-08 56.3 4.7 49 39-95 179-228 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0016 5.5E-08 48.8 2.1 31 39-69 2-35 (101)
75 2cs3_A Protein C14ORF4, MY039 93.5 0.11 3.8E-06 37.8 4.8 39 37-75 12-54 (93)
76 2ko5_A Ring finger protein Z; 90.9 0.2 6.9E-06 37.5 3.6 51 35-96 23-73 (99)
77 3i2d_A E3 SUMO-protein ligase 89.2 0.24 8.2E-06 45.8 3.4 59 36-100 245-304 (371)
78 4fo9_A E3 SUMO-protein ligase 88.7 0.35 1.2E-05 44.5 4.2 59 36-100 211-270 (360)
79 1weo_A Cellulose synthase, cat 85.6 3.4 0.00012 30.5 7.1 50 39-97 15-71 (93)
80 2lri_C Autoimmune regulator; Z 83.0 1.5 5.2E-05 30.3 4.2 47 39-93 11-59 (66)
81 2rgt_A Fusion of LIM/homeobox 71.0 4.4 0.00015 32.5 4.4 47 38-96 31-77 (169)
82 1wil_A KIAA1045 protein; ring 70.2 7 0.00024 28.6 4.7 56 35-91 10-74 (89)
83 3arc_L Photosystem II reaction 65.3 2.8 9.6E-05 25.5 1.5 17 241-257 11-27 (37)
84 2d8v_A Zinc finger FYVE domain 64.2 4.5 0.00015 28.1 2.5 33 37-70 5-38 (67)
85 1m3v_A FLIN4, fusion of the LI 64.1 3.5 0.00012 31.3 2.2 51 39-99 31-84 (122)
86 2jtn_A LIM domain-binding prot 64.1 5 0.00017 32.5 3.4 46 39-96 86-131 (182)
87 2l5u_A Chromodomain-helicase-D 63.9 6.5 0.00022 26.4 3.4 48 37-92 8-57 (61)
88 2jmo_A Parkin; IBR, E3 ligase, 63.4 1.4 4.8E-05 31.5 -0.1 50 21-72 8-70 (80)
89 2xqn_T Testin, TESS; metal-bin 62.5 4.9 0.00017 30.4 2.8 46 39-96 29-75 (126)
90 1fjk_A Cardiac phospholamban; 62.4 9 0.00031 24.6 3.5 9 250-258 35-43 (52)
91 3mjh_B Early endosome antigen 62.1 1.3 4.5E-05 26.8 -0.4 16 38-53 3-18 (34)
92 1wd2_A Ariadne-1 protein homol 62.1 0.7 2.4E-05 31.5 -1.9 33 41-73 7-47 (60)
93 2k16_A Transcription initiatio 61.0 2.5 8.6E-05 29.5 0.8 54 36-95 14-70 (75)
94 2o35_A Hypothetical protein DU 56.6 4.2 0.00014 30.6 1.4 14 61-74 42-55 (105)
95 3fyb_A Protein of unknown func 56.4 4.3 0.00015 30.5 1.4 14 61-74 41-54 (104)
96 2pv0_B DNA (cytosine-5)-methyl 55.8 6.5 0.00022 36.4 2.9 55 39-94 92-149 (386)
97 1wen_A Inhibitor of growth fam 55.0 15 0.00051 25.5 4.1 49 37-94 13-66 (71)
98 2cup_A Skeletal muscle LIM-pro 54.5 7.8 0.00027 27.9 2.7 46 39-96 32-78 (101)
99 2ct7_A Ring finger protein 31; 53.0 3.3 0.00011 29.8 0.3 50 20-70 6-61 (86)
100 1f62_A Transcription factor WS 52.2 7.3 0.00025 24.9 1.9 45 42-92 2-49 (51)
101 2xjy_A Rhombotin-2; oncoprotei 52.0 10 0.00035 28.6 3.1 49 38-96 27-78 (131)
102 1x62_A C-terminal LIM domain p 51.9 13 0.00045 25.5 3.4 40 38-95 13-52 (79)
103 1mm2_A MI2-beta; PHD, zinc fin 51.6 5.6 0.00019 26.7 1.3 48 38-93 7-56 (61)
104 1weu_A Inhibitor of growth fam 50.1 14 0.00048 27.1 3.4 48 37-94 33-86 (91)
105 2l43_A N-teminal domain from h 49.4 5.7 0.0002 28.8 1.2 54 36-97 21-79 (88)
106 3u5n_A E3 ubiquitin-protein li 48.6 3.7 0.00013 34.4 -0.0 48 39-94 6-55 (207)
107 1rut_X Flinc4, fusion protein 48.5 5 0.00017 32.8 0.8 48 39-96 31-81 (188)
108 1x4u_A Zinc finger, FYVE domai 47.5 12 0.00041 26.6 2.7 33 37-69 11-47 (84)
109 1x64_A Alpha-actinin-2 associa 47.4 21 0.00072 25.1 4.0 42 38-97 23-64 (89)
110 2yw8_A RUN and FYVE domain-con 46.4 9.5 0.00033 27.1 1.9 32 39-70 18-53 (82)
111 1z2q_A LM5-1; membrane protein 45.8 16 0.00054 26.0 3.1 33 38-70 19-55 (84)
112 1vfy_A Phosphatidylinositol-3- 44.9 12 0.00041 25.9 2.3 29 42-70 13-45 (73)
113 3o36_A Transcription intermedi 44.8 6.4 0.00022 32.1 0.9 48 40-94 4-52 (184)
114 1fp0_A KAP-1 corepressor; PHD 44.5 12 0.00043 27.2 2.3 49 37-93 22-72 (88)
115 2fiy_A Protein FDHE homolog; F 43.1 2.7 9.2E-05 37.8 -1.8 46 38-93 180-231 (309)
116 1joc_A EEA1, early endosomal a 42.6 8.3 0.00028 29.8 1.2 32 39-70 68-103 (125)
117 3a1b_A DNA (cytosine-5)-methyl 42.3 12 0.0004 30.5 2.0 52 39-93 78-134 (159)
118 1iml_A CRIP, cysteine rich int 41.9 18 0.00062 24.5 2.8 45 38-94 25-71 (76)
119 1x61_A Thyroid receptor intera 40.7 33 0.0011 22.7 4.0 34 39-72 32-66 (72)
120 2lbm_A Transcriptional regulat 39.8 22 0.00076 28.2 3.3 57 37-93 60-117 (142)
121 2lv9_A Histone-lysine N-methyl 39.8 12 0.00041 27.5 1.7 47 38-92 26-75 (98)
122 2ysm_A Myeloid/lymphoid or mix 39.3 13 0.00045 27.6 1.9 49 37-91 4-55 (111)
123 3hd7_B Syntaxin-1A; membrane p 38.9 39 0.0013 25.2 4.5 20 239-258 80-99 (109)
124 2dar_A PDZ and LIM domain prot 38.0 17 0.00058 25.7 2.2 39 40-96 25-63 (90)
125 2yql_A PHD finger protein 21A; 37.1 5.5 0.00019 26.2 -0.6 47 38-92 7-55 (56)
126 1dvp_A HRS, hepatocyte growth 36.2 16 0.00055 30.6 2.1 35 37-71 158-196 (220)
127 3t7l_A Zinc finger FYVE domain 35.7 25 0.00084 25.4 2.8 52 39-94 19-74 (90)
128 1wfk_A Zinc finger, FYVE domai 34.9 11 0.00039 27.2 0.8 53 39-94 8-64 (88)
129 2l3k_A Rhombotin-2, linker, LI 34.3 74 0.0025 23.6 5.5 36 38-73 34-71 (123)
130 1yod_A Water-solublized phosph 33.8 29 0.001 19.9 2.2 11 249-259 13-23 (30)
131 3ql9_A Transcriptional regulat 33.4 39 0.0013 26.3 3.7 55 39-93 56-111 (129)
132 2puy_A PHD finger protein 21A; 32.8 5.2 0.00018 26.7 -1.3 48 39-94 4-53 (60)
133 2lat_A Dolichyl-diphosphooligo 32.6 24 0.00084 21.6 1.9 21 239-259 4-24 (37)
134 3mpx_A FYVE, rhogef and PH dom 32.3 9.5 0.00032 34.9 0.0 53 39-94 374-430 (434)
135 2ku3_A Bromodomain-containing 32.0 16 0.00055 25.3 1.2 48 37-92 13-65 (71)
136 2d8x_A Protein pinch; LIM doma 32.0 17 0.0006 24.1 1.3 32 39-70 30-62 (70)
137 2e6r_A Jumonji/ARID domain-con 32.0 11 0.00039 27.4 0.4 52 36-93 12-66 (92)
138 1xwh_A Autoimmune regulator; P 31.5 8.8 0.0003 26.1 -0.3 48 38-92 6-54 (66)
139 2ro1_A Transcription intermedi 31.0 14 0.00049 30.4 0.9 47 41-93 3-49 (189)
140 3e56_A Putative uncharacterize 30.2 19 0.00065 26.5 1.3 16 227-242 94-109 (113)
141 1wyh_A SLIM 2, skeletal muscle 29.1 32 0.0011 22.8 2.3 31 39-69 32-63 (72)
142 2cor_A Pinch protein; LIM doma 28.9 43 0.0015 22.9 3.0 26 41-66 16-41 (79)
143 2d8z_A Four and A half LIM dom 28.8 35 0.0012 22.5 2.5 33 39-71 30-63 (70)
144 1wep_A PHF8; structural genomi 28.6 1.4E+02 0.0046 20.6 5.7 51 38-94 10-64 (79)
145 1z60_A TFIIH basal transcripti 28.6 41 0.0014 22.6 2.7 39 42-90 17-58 (59)
146 1tac_A TAT protein; transcript 28.6 1.6E+02 0.0056 21.1 6.0 33 55-107 19-51 (86)
147 1y02_A CARP2, FYVE-ring finger 28.4 25 0.00085 27.0 1.8 34 38-71 17-54 (120)
148 3zyq_A Hepatocyte growth facto 28.3 33 0.0011 28.9 2.8 33 39-71 163-199 (226)
149 1x4l_A Skeletal muscle LIM-pro 28.0 36 0.0012 22.6 2.4 10 42-51 7-16 (72)
150 1nyp_A Pinch protein; LIM doma 27.1 27 0.00092 22.8 1.6 38 41-96 6-43 (66)
151 2l4z_A DNA endonuclease RBBP8, 27.0 36 0.0012 25.7 2.5 14 40-53 61-74 (123)
152 2cur_A Skeletal muscle LIM-pro 26.8 65 0.0022 21.0 3.6 34 39-72 30-64 (69)
153 1rkl_A Dolichyl-diphosphooligo 25.6 28 0.00097 21.1 1.3 21 239-259 4-24 (36)
154 2yt5_A Metal-response element- 25.5 12 0.00042 25.1 -0.4 54 38-94 4-62 (66)
155 2jne_A Hypothetical protein YF 25.5 4.3 0.00015 30.4 -2.9 41 41-96 33-73 (101)
156 1x63_A Skeletal muscle LIM-pro 25.1 39 0.0013 23.0 2.2 25 42-66 17-43 (82)
157 1v6g_A Actin binding LIM prote 25.0 29 0.001 23.7 1.5 37 42-96 17-53 (81)
158 1j2o_A FLIN2, fusion of rhombo 24.8 64 0.0022 23.6 3.6 34 39-72 29-65 (114)
159 2cuq_A Four and A half LIM dom 24.4 42 0.0014 22.7 2.3 28 41-68 42-70 (80)
160 1wig_A KIAA1808 protein; LIM d 24.3 34 0.0012 23.1 1.8 37 41-95 6-42 (73)
161 2d8y_A Eplin protein; LIM doma 24.3 58 0.002 22.8 3.1 34 39-72 41-75 (91)
162 1x68_A FHL5 protein; four-and- 23.6 38 0.0013 22.8 1.9 37 41-95 6-46 (76)
163 1b8t_A Protein (CRP1); LIM dom 23.4 58 0.002 26.2 3.3 35 38-72 32-67 (192)
164 3shb_A E3 ubiquitin-protein li 22.8 14 0.00049 26.1 -0.5 46 42-92 28-76 (77)
165 1x4k_A Skeletal muscle LIM-pro 22.3 40 0.0014 22.2 1.8 30 40-69 33-63 (72)
166 3v43_A Histone acetyltransfera 22.3 23 0.00079 26.5 0.5 47 40-92 61-111 (112)
167 2cu8_A Cysteine-rich protein 2 22.2 32 0.0011 23.2 1.3 26 41-66 10-36 (76)
168 1b8t_A Protein (CRP1); LIM dom 22.1 62 0.0021 26.0 3.2 43 39-93 141-184 (192)
169 1x6a_A LIMK-2, LIM domain kina 22.1 34 0.0012 23.3 1.4 33 39-71 40-75 (81)
170 2lce_A B-cell lymphoma 6 prote 21.1 98 0.0034 19.8 3.6 45 36-96 13-57 (74)
171 2dj7_A Actin-binding LIM prote 21.1 51 0.0018 22.7 2.2 33 39-71 41-73 (80)
172 2gmg_A Hypothetical protein PF 21.0 21 0.0007 27.0 0.0 9 86-94 86-94 (105)
173 1x3h_A Leupaxin; paxillin fami 20.5 43 0.0015 22.7 1.6 11 40-50 41-51 (80)
174 2dlo_A Thyroid receptor-intera 20.4 35 0.0012 23.3 1.2 23 42-64 17-39 (81)
175 1jdm_A Sarcolipin; helix, memb 20.2 86 0.003 18.0 2.5 14 245-258 12-25 (31)
176 3dl8_E Protein-export membrane 20.0 33 0.0011 25.9 1.0 19 238-256 47-65 (107)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=104.66 Aligned_cols=63 Identities=19% Similarity=0.433 Sum_probs=53.7
Q ss_pred CCCCCCCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 32 NVPEKDGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 32 ~~~~~~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
...+..++.+.|+||++.+.+|+.+ +|||.||..||.+|+..+ . .||+||..+...++..+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~~~~~~ 70 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---------N-RCPKCNIVVHQTQPLSGPS 70 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC---------S-SCTTTCCCCCSSCSCCCCS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC---------C-cCCCcCcccCcccccccCC
Confidence 3445677889999999999999987 999999999999999764 4 9999999998877766543
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.50 E-value=1.5e-14 Score=105.40 Aligned_cols=61 Identities=31% Similarity=0.625 Sum_probs=52.8
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
+...+.+.|+||++.+.+|++++|||.||..||.+|+... .. .||+||..+...++.+++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--------~~-~CP~C~~~~~~~~l~~n~~ 63 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--------HK-TCPKSQETLLHAGLTPNYV 63 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--------CC-BCTTTCCBCSSCCCEECTT
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--------cC-CCCCCcCCCChhhCccCHH
Confidence 3456789999999999999999999999999999999752 24 8999999998877777654
No 3
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=101.53 Aligned_cols=70 Identities=30% Similarity=0.600 Sum_probs=56.3
Q ss_pred CCCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCC
Q 024938 33 VPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 106 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 106 (260)
..+...+.+.|+||++.+.+|++++|||.||..||.+|+.... ...... .||+||..+..+++.+++...
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~~~~~-~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR---NTDGKG-NCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB---CTTSCB-CCTTTCCCCCTTCCEECSCCC
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc---CCCCCC-CCCCCCCcCCHHhCCcCHHHH
Confidence 3455677899999999999999999999999999999998632 011234 999999999888777776543
No 4
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=102.39 Aligned_cols=57 Identities=26% Similarity=0.639 Sum_probs=49.0
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
+...+.+.|+||++.+.+|+.++|||.||..||.+|+... . .||+||..+...+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---------K-RCALCRQEIPEDFLDS 66 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS---------S-BCSSSCCBCCHHHHSC
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC---------C-cCcCcCchhCHhhccC
Confidence 3455678999999999999999999999999999999854 4 9999999998765543
No 5
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=8.5e-14 Score=100.78 Aligned_cols=55 Identities=33% Similarity=0.593 Sum_probs=47.2
Q ss_pred CCCCCCCcccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 33 VPEKDGSFFECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
..+...+.+.|+||++.+.+|++++ |||.||..||.+|+.... .. .||+||+.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~-~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EH-TCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-------SS-CCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-------CC-cCCCCCCcCC
Confidence 3456778899999999999999999 999999999999998541 23 8999999754
No 6
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=6.2e-14 Score=104.65 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=53.5
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
....+.+.|+||++.+.+||+++|||+||..||.+|+... . .||+|+..+...+++++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~---------~-~cP~~~~~l~~~~l~pn~~ 68 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS---------P-TDPFNRQMLTESMLEPVPE 68 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC---------S-BCTTTCCBCCGGGCEECHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC---------C-CCCCCcCCCChHhcchHHH
Confidence 3456789999999999999999999999999999999853 4 9999999999888888754
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.46 E-value=2.1e-14 Score=102.38 Aligned_cols=58 Identities=31% Similarity=0.801 Sum_probs=51.4
Q ss_pred CCCCcccccccccCCCCc-------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDP-------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~P-------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
...+.+.|+||++.+.+| +.++|||.||..||.+|+..+ . .||+||..+..+++.++|
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------N-TCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------S-BCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------C-CCCCCCCccChhheeecc
Confidence 345678999999999887 889999999999999999865 4 999999999988888876
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.6e-14 Score=99.72 Aligned_cols=57 Identities=23% Similarity=0.543 Sum_probs=48.5
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
.+...+.+.|+||++.+.+|+.++|||.||..||.+|+... .. .||+||+.+..+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~-~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS--------SP-KCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS--------SC-CCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC--------cC-CCCCCCcCCChhhc
Confidence 34567789999999999999999999999999999999632 24 89999999876643
No 9
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=6.5e-14 Score=105.07 Aligned_cols=64 Identities=31% Similarity=0.506 Sum_probs=51.8
Q ss_pred CCCCCCCcccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc-cccccccccc
Q 024938 33 VPEKDGSFFECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI-SVASLVPLYG 104 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v-~~~~l~p~~~ 104 (260)
..+...+.+.|+||++.+.+|++++ |||.||..||.+|+.... .. .||+||..+ ....+.+++.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~-~CP~Cr~~~~~~~~~~~n~~ 71 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EH-TCPTCHQNDVSPDALIANKF 71 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-------TC-CCTTTCCSSCCTTSCEECHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-------CC-cCcCCCCcCCCccccCcCHH
Confidence 3446678899999999999999999 999999999999997532 24 999999997 4555555543
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.1e-14 Score=99.65 Aligned_cols=59 Identities=32% Similarity=0.647 Sum_probs=49.2
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
.+...+.+.|+||++.+.+|++++|||.||..||.+|+.... ... .||+||..+..+++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~-~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFF-KCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC------SCC-CCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC------CCC-CCCCCCCcCCcccC
Confidence 345677899999999999999999999999999999997321 224 89999999876654
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-14 Score=103.55 Aligned_cols=70 Identities=24% Similarity=0.463 Sum_probs=55.7
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCC
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 106 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 106 (260)
.+...+.+.|+||++.+.+|++++|||.||..||.+|+..... ...... .||+||..+...++.+++...
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~--~~~~~~-~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVT--SMGGKS-SCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSS--SCCCCC-CCSSSCCCCCSSGGGTCSSSC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhccc--CCCCCC-cCCCCCCcCCHhhCCcCHHHH
Confidence 3456778999999999999999999999999999999985310 011234 999999999888877776543
No 12
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=100.57 Aligned_cols=69 Identities=22% Similarity=0.474 Sum_probs=55.2
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCC
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 106 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 106 (260)
.+...+.+.|+||++.+.+|+.++|||.||..||.+|+..+. ...... .||+||..+...++.+++...
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~~~~~-~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM---LDKGES-SCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH---HTTSCC-CCTTTCCSSCSSSCCCSCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh---cCCCCC-cCCCCCCccCHHhcCccHHHH
Confidence 345677899999999999999999999999999999998631 011234 999999999887777766543
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.44 E-value=6.5e-14 Score=107.77 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
....+.+.||||++.+.+||+++|||+||..||.+|+... . .||+|+..+...+++++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~---------~-~cP~~~~~l~~~~L~pn~~ 83 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS---------P-TDPFNRQTLTESMLEPVPE 83 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC---------S-BCSSSCCBCCTTSSEECHH
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC---------C-CCCCCCCCCChhhceECHH
Confidence 3556789999999999999999999999999999999843 4 9999999999888888764
No 14
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.43 E-value=1.2e-13 Score=105.82 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=53.7
Q ss_pred CCCCCcccccccccCCCCcEEccCC-CccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCG-HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CG-H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
....+.+.|+||++.+.+||+++|| |.||..||.+|+... . .||+|+..+...+++++..
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~---------~-~cP~~~~~l~~~~L~pn~~ 77 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD---------Q-TDPFNRSPLTMDQIRPNTE 77 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS---------C-BCTTTCSBCCTTTSEECHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC---------C-CCCCCCCCCChhhceEcHH
Confidence 3556789999999999999999999 999999999999853 4 8999999999888888764
No 15
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=4.9e-15 Score=117.50 Aligned_cols=58 Identities=24% Similarity=0.580 Sum_probs=48.2
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc-cccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV-ASLVPL 102 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~-~~l~p~ 102 (260)
...+.+.|+||++.+.+|+.++|||.||..||.+|+..+. . .||+||..+.. ..+.++
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~~~~~n 106 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV--------F-SCPACRYDLGRSYAMQVN 106 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC--------C-BCTTTCCBCCTTCCCCCC
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc--------C-CCCCCCccCCCCCCCCCC
Confidence 3356789999999999999999999999999999998432 4 89999999976 444443
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=100.43 Aligned_cols=51 Identities=31% Similarity=0.751 Sum_probs=45.6
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
+...+.+.|+||++.+.+|++++|||.||..||.+|+... . .||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~-~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT---------P-RCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC---------S-BCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC---------C-cCCCcCcccc
Confidence 4456678999999999999999999999999999999854 4 9999999986
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=5.8e-14 Score=97.83 Aligned_cols=55 Identities=33% Similarity=0.857 Sum_probs=49.4
Q ss_pred CcccccccccCCCCc-------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 39 SFFECNICLDSAQDP-------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 39 ~~~~C~ICld~~~~P-------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
+.+.|+||++.+.+| +.++|||.||..||.+|+..+ . .||+||..+...++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------N-TCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---------S-BCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---------C-CCCCCCccCCccceeeee
Confidence 467999999999887 789999999999999999864 4 999999999998888876
No 18
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=106.21 Aligned_cols=60 Identities=32% Similarity=0.781 Sum_probs=52.4
Q ss_pred CCCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.+.+.+.|+||++.+.+|+. ++|||.||..||.+|+.... . .||+||..+...++++++.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--------A-QCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--------S-BCTTTCCBCCGGGCEECTT
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--------C-CCCCCCCcCCHHHhHhhHH
Confidence 44578899999999999999 99999999999999998652 3 8999999998888777654
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7e-13 Score=98.10 Aligned_cols=60 Identities=30% Similarity=0.670 Sum_probs=49.8
Q ss_pred CCCCCCCcccccccccCCCC----cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 33 VPEKDGSFFECNICLDSAQD----PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~----Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
..+...+.+.|+||++.+.+ |++++|||.||..||.+|+..+. ... .||+||..+...++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~-~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGV-RCPFCSKITRITSL 71 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCB-CCTTTCCCBCCSST
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCc-CCCCCCCcccchhH
Confidence 34566788999999999998 99999999999999999998641 124 99999999876543
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=6.8e-13 Score=92.68 Aligned_cols=51 Identities=35% Similarity=0.687 Sum_probs=43.1
Q ss_pred CCCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 33 VPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
..+...+.+.|+||++.+.+|++++|||.||..||.+|++... ... .||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~-~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFF-KCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS------SCC-CCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC------CCC-cCcCC
Confidence 3456778899999999999999999999999999999998521 124 89998
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=3.4e-13 Score=98.04 Aligned_cols=58 Identities=29% Similarity=0.654 Sum_probs=47.5
Q ss_pred CCCCCCcccccccccCCCCc---EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDP---VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~P---vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
.+...+...|+||++.+.++ ++++|||.||..||.+|+..+ . .||+||+.+...++.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---------D-SCPVCRKSLTGQNTAT 69 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---------C-SCTTTCCCCCCSCSCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---------C-cCcCcCCccCCcccCC
Confidence 34556788999999999765 567999999999999999754 4 9999999987765544
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.7e-13 Score=95.76 Aligned_cols=53 Identities=30% Similarity=0.751 Sum_probs=45.8
Q ss_pred CCCCCCcccccccccCCCCc-------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDP-------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~P-------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+...+.+.|+||++.+.++ ++++|||.||..||.+|+..+ . .||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------N-TCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---------S-SCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---------C-CCCCCCCccCc
Confidence 34566789999999999887 889999999999999999864 4 99999998753
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=3e-13 Score=95.19 Aligned_cols=57 Identities=23% Similarity=0.516 Sum_probs=48.0
Q ss_pred Cccccccccc-CCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 39 SFFECNICLD-SAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 39 ~~~~C~ICld-~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
+++.|+||++ .+.+| ++++|||.||..||.+|+.... . .||+||+.+...++.+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA--------G-NCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS--------S-SCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC--------C-cCCCCCCccccccceeecc
Confidence 4578999999 88888 5789999999999999986432 4 8999999999888877654
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=9.8e-14 Score=105.66 Aligned_cols=59 Identities=25% Similarity=0.604 Sum_probs=50.7
Q ss_pred CCCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
...+.+.|+||++.+.+|+++ +|||.||..||.+|+..+ . .||+||..+...++.+++.
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~l~~n~~ 77 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---------T-QCPTCCVTVTEPDLKNNRI 77 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---------C-BCTTTCCBCCGGGCEECHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC---------C-CCCCCCCcCChhhCCcCHH
Confidence 345678999999999999998 899999999999999854 4 9999999998777776653
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=95.86 Aligned_cols=55 Identities=33% Similarity=0.785 Sum_probs=46.8
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
.+...+...|+||++.+.+ ++++|||.||..||.+|+... . .||+||..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRH---------R-NCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCC---------S-SCHHHHHCTTCCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCc---------C-cCCCcCCcccCCCc
Confidence 3456678899999999999 999999999999999999843 4 99999999875543
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.34 E-value=3.1e-14 Score=117.14 Aligned_cols=58 Identities=26% Similarity=0.574 Sum_probs=48.9
Q ss_pred CCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc-cccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA-SLVPLY 103 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~-~l~p~~ 103 (260)
..+.+.|+||++.+.+|++++|||.||..||.+|+.... . .||+||..+... .+.+++
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV--------F-SCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC--------C-BCTTTCCBCCTTCCCCBCH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC--------C-cCCCCCccCCCCCCCCCCH
Confidence 446789999999999999999999999999999998532 4 899999999876 454443
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.33 E-value=1e-12 Score=103.32 Aligned_cols=60 Identities=33% Similarity=0.609 Sum_probs=52.3
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~ 102 (260)
.+...+.+.|+||++.+.+|+.++|||.||..||.+|+..+. . .||+||..+...++.++
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------H-KCPVDNEILLENQLFPD 71 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------S-BCTTTCCBCCGGGCEEC
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--------C-CCCCCCCCcCHHhcccC
Confidence 356778899999999999999999999999999999998753 4 89999999987766554
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=91.65 Aligned_cols=52 Identities=29% Similarity=0.753 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCC---CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 35 EKDGSFFECNICLDSAQ---DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~---~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.......|+||++.+. .++.++|||.||..||.+|+..+ . .||+||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------K-KCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------S-BCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------C-CCcCcCccccC
Confidence 44556789999999885 45779999999999999999865 4 89999998864
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=4.7e-13 Score=108.14 Aligned_cols=49 Identities=29% Similarity=0.813 Sum_probs=43.9
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+++.|+||++.+.+|++++|||.||..||.+|+..+ . .||+||..+..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK---------I-ECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC---------S-BCTTTCCBCCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC---------C-cCCCCCCcCCC
Confidence 3467899999999999999999999999999999854 4 89999999864
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=88.62 Aligned_cols=51 Identities=33% Similarity=0.834 Sum_probs=42.2
Q ss_pred CCCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 33 VPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 33 ~~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
..+...+.+.|+||++.+.+|++++|||.||..||.+|+.... ... .||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~-~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE------RDF-PCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC------CSC-CCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC------CCC-CCCCC
Confidence 3455677899999999999999999999999999999976311 124 89998
No 31
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=98.35 Aligned_cols=64 Identities=25% Similarity=0.493 Sum_probs=51.8
Q ss_pred CCCcccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCC--cccc-ccccccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPV--CKAN-ISVASLVPLYG 104 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPv--Cr~~-v~~~~l~p~~~ 104 (260)
..+.+.||||++.+.+||+++ |||+||..||.+|+.... +..... .||+ |+.. +...+++++..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~---~~~~~~-~CP~tgc~~~~l~~~~L~pn~~ 71 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ---KRKKKA-YCPQIGCSHTDIRKSDLIQDEA 71 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH---TTTCCB-CCCSTTCCCCCBCGGGEEECHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc---CcCCCC-CCCcCcCcccccCHhhCcCCHH
Confidence 456799999999999999996 999999999999998641 001124 8999 9887 88888888764
No 32
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=1.6e-12 Score=114.84 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=53.0
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
...+.+.|+||++.+.+||+++|||+||+.||.+|+.... . .||+|+..+...+++|+..
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--------~-~cP~~~~~~~~~~l~~n~~ 263 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------H-FNPVTRSPLTQEQLIPNLA 263 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--------S-SCTTTCCCCCGGGCEECHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--------C-CCcCCCCCCchhcCcccHH
Confidence 4557899999999999999999999999999999998542 3 6999999999888888764
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=9.9e-13 Score=101.67 Aligned_cols=60 Identities=35% Similarity=0.786 Sum_probs=50.0
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.+.+.|+||++.+.+|+.++|||.||..||.+|+..+. ... .||+||..+...++.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~-~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------GPS-QCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS------SSC-CCTTTSCCCCTTTCBCCCS
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC------CCC-CCcCCCCcCCHhhcCccHH
Confidence 45679999999999999999999999999999998542 124 8999999998776665543
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.3e-12 Score=100.92 Aligned_cols=52 Identities=23% Similarity=0.639 Sum_probs=46.0
Q ss_pred CCCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
...+.+.|+||++.+.+|+.+ +|||.||..||.+|+... . .||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~-~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---------K-YCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC---------S-BCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC---------C-cCcCCCcccccc
Confidence 345788999999999999997 999999999999999854 4 999999998764
No 35
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=91.22 Aligned_cols=53 Identities=25% Similarity=0.652 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCCcE---EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDPV---VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pv---vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+...+...|+||++.+.++. +++|||.||..||.+|+..+ . .||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~-~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------K-VCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------S-BCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------C-cCCCcCccccc
Confidence 345566789999999997664 45999999999999999865 4 89999998854
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=9.9e-13 Score=102.67 Aligned_cols=53 Identities=28% Similarity=0.666 Sum_probs=46.3
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
....+.+.|+||++.+.+|++++|||.||..||.+|+.... . .||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS--------L-CCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTT--------S-BCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCc--------C-CCCCCCcccCc
Confidence 45567899999999999999999999999999999997532 4 99999999864
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.5e-12 Score=102.80 Aligned_cols=58 Identities=31% Similarity=0.758 Sum_probs=51.7
Q ss_pred CCcccccccccCCCCc-------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccC
Q 024938 38 GSFFECNICLDSAQDP-------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGR 105 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P-------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 105 (260)
.+.+.|+||++.+.+| +.++|||.||+.||.+|++.+ . .||+||+.+...++.+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------N-TCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---------S-BCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---------C-CCCCCCCcCccccccccccC
Confidence 4678999999999988 899999999999999999854 4 99999999998888887654
No 38
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=1.2e-12 Score=102.37 Aligned_cols=57 Identities=33% Similarity=0.640 Sum_probs=49.1
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVP 101 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p 101 (260)
...+.+.|+||++.+.+|+.++|||.||..||.+|+.... . .||+||..+...++.+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--------S-YCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------S-BCTTTCCBCCGGGCBC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc--------C-cCCCCCCCCCHhhccc
Confidence 3456789999999999999999999999999999998632 4 8999999998766543
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.25 E-value=4.1e-12 Score=86.09 Aligned_cols=48 Identities=29% Similarity=0.783 Sum_probs=41.3
Q ss_pred CCcccccccccCCCC---cEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 38 GSFFECNICLDSAQD---PVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 38 ~~~~~C~ICld~~~~---Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
++...|+||++.+.+ ++.++ |||.||..||.+|++.+ . .||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---------~-~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH---------S-TCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC---------C-SCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC---------C-cCcCCCCEeE
Confidence 466799999999987 67787 99999999999999854 4 9999998763
No 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=3.5e-12 Score=86.32 Aligned_cols=47 Identities=32% Similarity=0.654 Sum_probs=41.0
Q ss_pred CcccccccccCCCC----cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQD----PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~----Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
+...|+||++.+.+ +++++|||.||..||.+|+... . .||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------Y-RCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------C-CCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------C-cCCCCCCcCC
Confidence 46789999999865 7789999999999999999865 3 9999998774
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=1.8e-12 Score=107.49 Aligned_cols=52 Identities=31% Similarity=0.672 Sum_probs=45.1
Q ss_pred CCCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...+.+.|+||++.+.+|+.+ +|||.||..||.+|+.... . .||+||..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~ 102 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN--------K-ECPTCRKKLVS 102 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC--------C-BCTTTCCBCCS
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc--------C-CCCCCCCcCCC
Confidence 455678999999999999987 9999999999999998532 4 89999999853
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.4e-12 Score=92.23 Aligned_cols=50 Identities=26% Similarity=0.692 Sum_probs=43.1
Q ss_pred CCCcccccccccCCCCc---EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 37 DGSFFECNICLDSAQDP---VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~P---vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+...|+||++.+.++ +.++|||.||..||.+|+..+ . .||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~-~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------R-TCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------S-SCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------C-cCcCcCCcCCC
Confidence 44667999999999877 678999999999999999865 4 99999998764
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=4.9e-12 Score=106.96 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
....+.+.||||++.+.+||+++|||+||..||.+|+.... . .||+|+..+...+++|+..
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--------~-tcP~t~~~l~~~~L~pN~~ 161 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------H-FDPVTRSPLTQDQLIPNLA 161 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------S-BCTTTCCBCCGGGCEECHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--------C-CCCCCcCCCChhhCcchHH
Confidence 35578999999999999999999999999999999998632 4 7999999999888988864
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=5.4e-12 Score=94.89 Aligned_cols=51 Identities=27% Similarity=0.665 Sum_probs=43.4
Q ss_pred CCCCcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...+...|+||++.+.+ ++.++|||.||..||.+|+..+ . .||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---------~-~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS---------G-TCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT---------C-BCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC---------C-cCcCcCccCCC
Confidence 34567899999999876 7779999999999999999854 4 99999998753
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=1e-11 Score=87.75 Aligned_cols=47 Identities=30% Similarity=0.897 Sum_probs=41.7
Q ss_pred CcccccccccCCCCc-EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQDP-VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....|+||++.+.+| +.++|||.||..|+.+|+... . .||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---------P-TCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS---------C-STTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc---------C-cCcCCChhhH
Confidence 456899999999997 778999999999999999854 4 9999999885
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=3.1e-12 Score=100.37 Aligned_cols=55 Identities=24% Similarity=0.608 Sum_probs=48.2
Q ss_pred CCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
+.+.+.|+||++.+.+|+++ +|||.||..||.+|+. . .||+||..+...++.+++
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----------~-~CP~Cr~~~~~~~~~~n~ 74 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----------T-GCPVCYTPAWIQDLKINR 74 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----------T-BCSSSCCBCSCSSCCCCH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----------C-CCcCCCCcCccccccccH
Confidence 34678999999999999999 9999999999999996 2 899999999776666655
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=3.3e-12 Score=87.67 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=40.7
Q ss_pred CCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+.+.|+||++.+.+|++++|||.||..||.+|. . .||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~------------~-~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASG------------M-QCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSS------------S-SCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccCC------------C-CCCcCCcEeec
Confidence 34678999999999999999999999999997742 3 89999998864
No 48
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=101.91 Aligned_cols=60 Identities=33% Similarity=0.609 Sum_probs=52.1
Q ss_pred CCCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccc
Q 024938 34 PEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPL 102 (260)
Q Consensus 34 ~~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~ 102 (260)
.+.+.+.+.|+||++.+.+|+.++|||.||..||.+|+..+. . .||+||..+...++.++
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~-~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------H-KCPVDNEILLENQLFPD 71 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------S-BCTTTCCBCCGGGCEEC
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--------C-CCCCCccCcchhhhhhh
Confidence 346778999999999999999999999999999999998653 4 89999999987665543
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=3.8e-12 Score=103.56 Aligned_cols=52 Identities=29% Similarity=0.604 Sum_probs=45.9
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
+..++.+.|+||++.+.+|+.++|||.||..||.+|+.... . .||+||..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~--------~-~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP--------Q-NCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC--------E-ECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC--------C-CCCCCCCccc
Confidence 46678899999999999999999999999999999997542 4 8999999764
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=8.5e-12 Score=98.47 Aligned_cols=58 Identities=31% Similarity=0.764 Sum_probs=51.4
Q ss_pred CCCcccccccccCCCCc-------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 37 DGSFFECNICLDSAQDP-------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~P-------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.++...|+||++.+.++ +.++|||.||..||.+|++.. + .||+||..+..+++.++|.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~-~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------N-TCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---------S-BCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---------C-CCCCCCCcCChhcceeeeC
Confidence 34678999999999876 889999999999999999865 4 9999999999999988873
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=2.8e-11 Score=88.91 Aligned_cols=56 Identities=20% Similarity=0.472 Sum_probs=43.9
Q ss_pred CCCCCcccccccccCCC--CcEEcc--CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 35 EKDGSFFECNICLDSAQ--DPVVTL--CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~--~Pvvt~--CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
...++++.|+||++.+. ++++++ |||.||..|+.+++... .. .||+||+.+....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--------~~-~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--------NG-LCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--------CS-BCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--------CC-CCCCCCCccCCCch
Confidence 34567899999999884 455555 99999999999987532 24 99999999976544
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.12 E-value=2.8e-11 Score=94.06 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=40.7
Q ss_pred cccccccccCCCCcE------------------EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQDPV------------------VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~~Pv------------------vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+..|+||++.+.+++ .++|||.||..||.+|+.... ..... .||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~----~~~~~-~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN----KDGSL-QCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC----CSSCC-BCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc----CCCCC-cCCCCCCccCC
Confidence 459999999997654 688999999999999996421 01224 99999998854
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.8e-11 Score=86.74 Aligned_cols=50 Identities=28% Similarity=0.633 Sum_probs=40.5
Q ss_pred CcccccccccCCCC--------------cEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccc
Q 024938 39 SFFECNICLDSAQD--------------PVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98 (260)
Q Consensus 39 ~~~~C~ICld~~~~--------------Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~ 98 (260)
+...|+||++.+.+ ++++ .|||.||..||.+|+..+ . +||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~-~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------N-RCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------C-BCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------C-CCCCcCCCcchhh
Confidence 45679999988866 4555 499999999999999865 3 9999999986554
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.09 E-value=6e-11 Score=83.19 Aligned_cols=55 Identities=15% Similarity=0.310 Sum_probs=50.1
Q ss_pred cccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 40 FFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
.+.|+||++.+.+||++ +|||.|++.||.+|+..+ . +||+++..+..++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---------~-~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---------G-NDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---------S-BCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---------C-CCcCCcCCCChhhcEECcc
Confidence 47899999999999999 999999999999999865 4 7999999999999998864
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.4e-10 Score=103.04 Aligned_cols=61 Identities=21% Similarity=0.417 Sum_probs=52.2
Q ss_pred CCCCcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCC--ccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPV--CKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPv--Cr~~v~~~~l~p~~~ 104 (260)
.....+.||||++.+.+||.. .|||.||..||.+|+.... .. .||+ |+..+...+++++..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~-------~~-~CPvtGCr~~l~~~dL~pN~~ 240 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT-------TR-DCPQAACSQVVSMRDFVRDPI 240 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS-------CE-ECSGGGCSCEECGGGEEECHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC-------CC-CCCcccccCcCchhhCCcCHH
Confidence 456789999999999999984 9999999999999997431 23 8999 999999888888754
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.03 E-value=1.3e-10 Score=108.87 Aligned_cols=53 Identities=32% Similarity=0.868 Sum_probs=45.7
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
....|+||++.+.+|+.++|||.||+.|+..|+.... . .||+||..+.....+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~--------~-~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG--------Q-GCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTC--------S-BCTTTCCBCCEEEEC
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCC--------C-CCCCCCCccCCceeE
Confidence 4479999999999999999999999999999998422 4 999999999765543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.99 E-value=1.2e-10 Score=84.24 Aligned_cols=46 Identities=33% Similarity=0.655 Sum_probs=41.0
Q ss_pred CCCcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+...|+||++.+.+++.++|||. ||..|+.+| . .||+||..+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~----------~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D----------KCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----S----------BCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----c----------cCCCcCcCccC
Confidence 3456799999999999999999999 999999988 1 89999999864
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.95 E-value=3e-10 Score=80.04 Aligned_cols=54 Identities=30% Similarity=0.688 Sum_probs=44.6
Q ss_pred CCcccccccccCCCCcEEc--cCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccc
Q 024938 38 GSFFECNICLDSAQDPVVT--LCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLY 103 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt--~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~ 103 (260)
++...|.||++...+++.+ +|||. +|+.|+.+|...+ . .||+||+.+. .++.+|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~-~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---------K-PCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---------C-CCTTTCCCCC--EEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---------C-cCCCcCcchh--ceEeee
Confidence 3566899999999999987 99999 8999999999743 4 8999999985 344443
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.93 E-value=5.5e-10 Score=86.65 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=39.3
Q ss_pred cccccccccCCCCc------------------EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQDP------------------VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~~P------------------vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...|+||++.+.++ +.++|+|.||..||.+|+..+ . .||+||+.+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~-~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------Q-VCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---------S-BCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---------C-cCcCCCCccee
Confidence 45799999998765 347899999999999999864 3 99999998653
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.90 E-value=5.3e-10 Score=78.51 Aligned_cols=47 Identities=28% Similarity=0.726 Sum_probs=41.4
Q ss_pred CcccccccccCCCCcEEc--cCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQDPVVT--LCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt--~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....|.||++...+++++ +|||. ||+.|+.+|.... . .||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~-~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---------A-SCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---------C-BCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---------C-cCCCcCchhh
Confidence 456899999999999887 99998 9999999998743 4 8999999985
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.5e-10 Score=81.27 Aligned_cols=45 Identities=33% Similarity=0.705 Sum_probs=39.1
Q ss_pred CCcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+...|+||++.+.+|+.++|||. ||..|+.++ . .||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-------------~-~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------------D-KCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-------------S-BCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-------------C-CCccCCceecC
Confidence 456789999999999999999999 999999542 3 89999998864
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.3e-09 Score=75.04 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=39.7
Q ss_pred CCCcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..+...|.||++...+++.++|||. ||+.|+.+ + + .||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-~------------~-~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-F------------Q-QCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-C------------S-SCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-C------------C-CCCCCCcchhc
Confidence 3456899999999999999999999 99999973 1 3 89999998864
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=8.3e-09 Score=76.02 Aligned_cols=51 Identities=25% Similarity=0.658 Sum_probs=41.9
Q ss_pred CCcccccccccCCC--CcEEccCC-----CccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQ--DPVVTLCG-----HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~--~Pvvt~CG-----H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+...|.||++.+. ++++++|. |.||..||.+|+..+. .. .||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-------~~-~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-------TR-CCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-------CS-BCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-------CC-CCCCCCCeeec
Confidence 34568999998774 67889996 9999999999998753 23 89999998864
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.75 E-value=2.1e-09 Score=78.87 Aligned_cols=45 Identities=24% Similarity=0.717 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+...|+||++...+++.++|||. ||..|+.+|. .||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~--------------~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ--------------SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS--------------BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC--------------cCCCCCchhhC
Confidence 345689999999999999999999 9999998652 89999999865
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.69 E-value=2.2e-09 Score=84.78 Aligned_cols=47 Identities=30% Similarity=0.746 Sum_probs=0.4
Q ss_pred cccccccccCCCCc-----------------EE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQDP-----------------VV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~~P-----------------vv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...|+||++.+.++ ++ ++|+|.||..||.+|+..+ . .||+||+.+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---------~-~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------Q-VCPLDNREWEF 112 (117)
T ss_dssp C--------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---------C-cCCCCCCeeee
Confidence 35899999998763 22 4899999999999999865 3 99999998643
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=4.1e-09 Score=79.26 Aligned_cols=61 Identities=16% Similarity=0.469 Sum_probs=45.2
Q ss_pred CCcccccccccCCCCcEEc---cCCCccCHHHHHHhhhhhcCCccccc-cCcCCCC--cccc--cccccccc
Q 024938 38 GSFFECNICLDSAQDPVVT---LCGHLYCWPCIYKWLHVQTSSLDADE-QQQNCPV--CKAN--ISVASLVP 101 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt---~CGH~fC~~Ci~~wl~~~~~s~~~~~-~~~~CPv--Cr~~--v~~~~l~p 101 (260)
++.+.|+||++.+.+++.+ +|||.||..||..++..+- .++. ....||. |+.. +....+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i---~~g~~~~i~CP~~~C~~~~~~~~~~i~~ 71 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLI---KEGLETAISCPDAACPKQGHLQENEIEC 71 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHH---HHCSCCCEECSCTTCSSCCEECHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHh---hcCCcccccCccccCCCCCccCHHHHHH
Confidence 3578999999999887553 6999999999999998642 1111 2348999 9998 76554443
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.57 E-value=1.4e-08 Score=93.81 Aligned_cols=45 Identities=31% Similarity=0.756 Sum_probs=40.5
Q ss_pred CCcccccccccCCCCcEEccCCCc-cCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHL-YCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~-fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+...|+||++.+.+|+.++|||. ||..|+.+| . .||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~----------~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R----------KCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S----------BCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C----------cCCCCCCCccC
Confidence 456899999999999999999999 999999887 1 89999999864
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=5.2e-07 Score=65.44 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=39.6
Q ss_pred CcccccccccCCCCcEEc-cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQDPVVT-LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt-~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....|.||.+.+..-..- .|+|.|+..||++|++... .. +||+|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-------~~-~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EP-RCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-------SC-CCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-------CC-CCCCCcCcCC
Confidence 456999999999865543 7999999999999998642 24 8999998764
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.16 E-value=1.6e-06 Score=60.20 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=40.2
Q ss_pred CCcccccccccCCCCcEEccCC--C---ccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCG--H---LYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CG--H---~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
++...|.||++...++.+++|. + .|+..||.+|+..+. .. .||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~-~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-------NT-ACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-------CS-BCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-------CC-ccCCCCCeee
Confidence 3556899999887778788865 4 899999999998652 24 9999998774
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.11 E-value=1.2e-06 Score=80.49 Aligned_cols=60 Identities=28% Similarity=0.588 Sum_probs=42.6
Q ss_pred CCCCcccccccccCCCC----cEE----ccCCCccCHHHHHHhhhhhcCCcccc--ccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQD----PVV----TLCGHLYCWPCIYKWLHVQTSSLDAD--EQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~----Pvv----t~CGH~fC~~Ci~~wl~~~~~s~~~~--~~~~~CPvCr~~v~~ 96 (260)
..++..+|+||++.+.+ |.. ..|||.|+..||++|+.....+...- -.. .||.||+.+..
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G-~CPyCr~pIs~ 373 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFG-QCPFCKAKLST 373 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEE-ECTTTCCEEEG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCC-CCCCCCCcCCc
Confidence 34567799999998876 322 37999999999999998653211110 113 79999998864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.78 E-value=1.4e-05 Score=60.92 Aligned_cols=48 Identities=19% Similarity=0.492 Sum_probs=38.1
Q ss_pred cccccccCCC-CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccc
Q 024938 42 ECNICLDSAQ-DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVAS 98 (260)
Q Consensus 42 ~C~ICld~~~-~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~ 98 (260)
.|++|.-.+. -.++++|.|.||.+|+..|.+.+. + .||.|+..+..-+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--------k-~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--------K-MCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--------C-BCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--------C-CCcCcCCeeeeeE
Confidence 5788876654 367889999999999999987543 5 9999999987543
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.59 E-value=0.0014 Score=67.26 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=53.4
Q ss_pred CCCCcccccccccCCCCcEEccCC-CccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCG-HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYG 104 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CG-H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~ 104 (260)
...++|.|||-++.+.|||+++.| ++|-+.+|.+|+... . +||+-|.++...+++|+..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~---------~-tdP~Tr~~L~~~~liPN~~ 946 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD---------S-TDPFNRMPLKLEDVTPNEE 946 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---------C-BCTTTCCBCCGGGCEECHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC---------C-CCCCCCCCCCcccccccHH
Confidence 556899999999999999999998 599999999999854 4 9999999999999999875
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.56 E-value=0.002 Score=56.32 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=39.6
Q ss_pred CcccccccccCCCCcEEcc-CCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 39 SFFECNICLDSAQDPVVTL-CGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~-CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
....|.||.+.+...+.-+ |+|.|+..|+.+|++... .. .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-------~~-~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EP-RCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-------SC-BCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-------CC-CCCCCCCCCC
Confidence 3568999999998776654 999999999999997542 24 9999988653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.28 E-value=0.0016 Score=48.76 Aligned_cols=31 Identities=32% Similarity=0.633 Sum_probs=27.1
Q ss_pred CcccccccccC-CCCcEE--ccCCCccCHHHHHH
Q 024938 39 SFFECNICLDS-AQDPVV--TLCGHLYCWPCIYK 69 (260)
Q Consensus 39 ~~~~C~ICld~-~~~Pvv--t~CGH~fC~~Ci~~ 69 (260)
++..|+||.+. +.+++. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45789999975 678888 89999999999987
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.47 E-value=0.11 Score=37.81 Aligned_cols=39 Identities=26% Similarity=0.706 Sum_probs=31.8
Q ss_pred CCCcccccccccCCCCcEEccC----CCccCHHHHHHhhhhhc
Q 024938 37 DGSFFECNICLDSAQDPVVTLC----GHLYCWPCIYKWLHVQT 75 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~C----GH~fC~~Ci~~wl~~~~ 75 (260)
....+.|.+|.+.+++-....| +|.||++|-...++.+.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~ 54 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQG 54 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcC
Confidence 3567899999999998654444 69999999999998764
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.85 E-value=0.2 Score=37.47 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=39.4
Q ss_pred CCCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 35 EKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...-+.+.|..|.-... ..+.-..|-+|..|+...+.... .||+|+.++..
T Consensus 23 ~s~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~Sd----------rCpIC~~pLPt 73 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVSN----------RCPICKMPLPT 73 (99)
T ss_dssp CCCSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSSS----------EETTTTEECCC
T ss_pred ccccCcccChhhccccC-CeeeecchhhHHHHHHHHHhhcc----------CCcccCCcCCc
Confidence 34556789999987666 34445569999999999998764 99999998854
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.15 E-value=0.24 Score=45.81 Aligned_cols=59 Identities=27% Similarity=0.553 Sum_probs=42.6
Q ss_pred CCCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
...-.+.|||-...+..|+. ..|.|+-|++- ..|+.... ....+.||+|.+.+...+|.
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~-----~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQL-----QIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHH-----HSCCCBCTTTCCBCCGGGEE
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhh-----cCCceeCCCCCcccCHHHee
Confidence 33456899999999999987 57999988875 34555331 12357999999998765543
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.72 E-value=0.35 Score=44.55 Aligned_cols=59 Identities=22% Similarity=0.443 Sum_probs=43.2
Q ss_pred CCCCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLV 100 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~ 100 (260)
...-.+.|||-...+..|+. ..|.|.-|++-. .|+.... ....+.||+|.+.+..++|.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~-----~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNE-----KKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHH-----HSCCCBCTTTCSBCCGGGEE
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHh-----hCCCeECCCCCcccCHHHeE
Confidence 34456899999999999986 579999888743 4555332 12357999999998866654
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.55 E-value=3.4 Score=30.50 Aligned_cols=50 Identities=34% Similarity=0.557 Sum_probs=34.7
Q ss_pred CcccccccccCCC-----CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 39 SFFECNICLDSAQ-----DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 39 ~~~~C~ICld~~~-----~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
....|.||-|.+- ++.+. .|+-..|.+|+.-=.+. +.+ .||.|+......
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke--------G~q-~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE--------GTQ-NCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT--------SCS-SCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc--------cCc-cccccCCccccc
Confidence 4579999999863 23232 58888999998543332 224 999999988644
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.97 E-value=1.5 Score=30.33 Aligned_cols=47 Identities=21% Similarity=0.588 Sum_probs=32.4
Q ss_pred CcccccccccCCCCcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 39 SFFECNICLDSAQDPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
....|.||.+.- + +++ .|...||..|+...+..-. ...+.|+.|++.
T Consensus 11 ~~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l~~~P------~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAGTSRP------GTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTTCCCC------SSSCCCTTTTTC
T ss_pred CCCCcCCCCCCC-e-EEECCCCCCceecccCCCccCcCC------CCCEECccccCC
Confidence 445799998642 2 222 5889999999987765332 335799999754
No 81
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=71.04 E-value=4.4 Score=32.50 Aligned_cols=47 Identities=17% Similarity=0.461 Sum_probs=34.8
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+.|.|..|...+.......=|..||..|..+.+. . .|..|...|..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~-~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------T-KCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----------C-BCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc-----------c-cccccccccCC
Confidence 36799999998887644556788999999877553 3 67777766654
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.21 E-value=7 Score=28.56 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=34.2
Q ss_pred CCCCCcccccccccCCCCcEEc---cCCCccCHHHHHHhhhhhcCC------ccccccCcCCCCcc
Q 024938 35 EKDGSFFECNICLDSAQDPVVT---LCGHLYCWPCIYKWLHVQTSS------LDADEQQQNCPVCK 91 (260)
Q Consensus 35 ~~~~~~~~C~ICld~~~~Pvvt---~CGH~fC~~Ci~~wl~~~~~s------~~~~~~~~~CPvCr 91 (260)
+....+..|.||...-.+ ... -|+-.|+..|+.+-=..+..+ ....+..+.|+.|.
T Consensus 10 e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred cCCCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 445567799999854433 233 389999999998852211110 01124458999993
No 83
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=65.27 E-value=2.8 Score=25.51 Aligned_cols=17 Identities=53% Similarity=0.684 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHH
Q 024938 241 SLNRVSLFLFCCLVLCL 257 (260)
Q Consensus 241 ~l~ri~~fl~~~~~lcl 257 (260)
-|||-++|++.++|+.|
T Consensus 11 ELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHH
Confidence 48889999888877776
No 84
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.15 E-value=4.5 Score=28.14 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=24.0
Q ss_pred CCCcccccccccCCCCcEEccC-CCccCHHHHHHh
Q 024938 37 DGSFFECNICLDSAQDPVVTLC-GHLYCWPCIYKW 70 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~C-GH~fC~~Ci~~w 70 (260)
.++..-|.||.+... =.-+.| |-+||..|+.+-
T Consensus 5 ~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCe-EEecCCCCceehHHHHHHH
Confidence 345668999999854 223578 789999998663
No 85
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.13 E-value=3.5 Score=31.33 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.9
Q ss_pred CcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccc
Q 024938 39 SFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASL 99 (260)
Q Consensus 39 ~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l 99 (260)
+.|.|..|...+.+ .....=|..||..|..+.+..+ . .|..|...|....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~---------~-~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---------G-AGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC---------C-SSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC---------C-ccccCCCCcCchhe
Confidence 56899999988863 3456678899999998876532 2 79999998876543
No 86
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=64.11 E-value=5 Score=32.54 Aligned_cols=46 Identities=17% Similarity=0.468 Sum_probs=27.7
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.|.|..|...+.......=|..||..|..+.+. . .|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~-kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------T-KCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS-----------C-CCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccccc-----------c-ccccCCCccCC
Confidence 4566666666555432334566777777765432 3 78888776653
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=63.94 E-value=6.5 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.494 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 37 DGSFFECNICLDSAQDPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
......|.||.+. .-++. .|...|+..|+..-+... ....+.||.|+.
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~------p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKA------PEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSC------CCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCC------CCCceECccccc
Confidence 3456689999873 22332 588899999997644321 133569999965
No 88
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=63.42 E-value=1.4 Score=31.48 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=29.4
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccc--cccCCC-----CcEEc------cCCCccCHHHHHHhhh
Q 024938 21 KQKWSPTSAPTNVPEKDGSFFECNI--CLDSAQ-----DPVVT------LCGHLYCWPCIYKWLH 72 (260)
Q Consensus 21 ~~~wk~~~~~~~~~~~~~~~~~C~I--Cld~~~-----~Pvvt------~CGH~fC~~Ci~~wl~ 72 (260)
.++|...........+ ...-||- |...+. ..|.- .||+.||+.|...|-.
T Consensus 8 ~~rY~~~~~e~~v~~~--~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 8 YNRYQQYGAEECVLQM--GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCCSSSCCSSCCC--SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred HHHHHHHHHHHHhhhC--CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 4555555443332222 2566776 665442 12443 5999999999988754
No 89
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=62.50 E-value=4.9 Score=30.37 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=36.4
Q ss_pred CcccccccccCCCC-cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQD-PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.|.|..|...+.. .....=|..||..|..+... . .|..|...|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-----------~-~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-----------V-VCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-----------C-BCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-----------c-cCcccCCcCCc
Confidence 57999999988875 44567789999999876443 4 89999998874
No 90
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=62.43 E-value=9 Score=24.59 Aligned_cols=9 Identities=44% Similarity=1.169 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 024938 250 FCCLVLCLL 258 (260)
Q Consensus 250 ~~~~~lcll 258 (260)
||++++|||
T Consensus 35 fclilicll 43 (52)
T 1fjk_A 35 FCLILIFLL 43 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 91
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.13 E-value=1.3 Score=26.78 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.9
Q ss_pred CCcccccccccCCCCc
Q 024938 38 GSFFECNICLDSAQDP 53 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P 53 (260)
++.|.||||+..+..+
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3569999999888765
No 92
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.06 E-value=0.7 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.745 Sum_probs=22.9
Q ss_pred ccccccccCCCCc-----EEcc---CCCccCHHHHHHhhhh
Q 024938 41 FECNICLDSAQDP-----VVTL---CGHLYCWPCIYKWLHV 73 (260)
Q Consensus 41 ~~C~ICld~~~~P-----vvt~---CGH~fC~~Ci~~wl~~ 73 (260)
-.||-|...++.. +.-. |++.|||.|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4677777666531 2222 9999999999888754
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=61.01 E-value=2.5 Score=29.48 Aligned_cols=54 Identities=26% Similarity=0.623 Sum_probs=34.0
Q ss_pred CCCCcccccccccCCCC-cEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 36 KDGSFFECNICLDSAQD-PVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~-Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
...+...|.||...-.. ..+. .|...|+..|+.--.... ....+.||.|+..+.
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~------~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPP------EEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCC------SSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCC------CCCCEEChhccCchh
Confidence 34456789999876543 2332 488889999985433211 123569999977654
No 94
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=56.60 E-value=4.2 Score=30.57 Aligned_cols=14 Identities=21% Similarity=0.847 Sum_probs=12.1
Q ss_pred ccCHHHHHHhhhhh
Q 024938 61 LYCWPCIYKWLHVQ 74 (260)
Q Consensus 61 ~fC~~Ci~~wl~~~ 74 (260)
.||+.|+.+|+...
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999854
No 95
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=56.38 E-value=4.3 Score=30.48 Aligned_cols=14 Identities=36% Similarity=0.956 Sum_probs=12.0
Q ss_pred ccCHHHHHHhhhhh
Q 024938 61 LYCWPCIYKWLHVQ 74 (260)
Q Consensus 61 ~fC~~Ci~~wl~~~ 74 (260)
.||+.|+.+|+...
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999853
No 96
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=55.84 E-value=6.5 Score=36.42 Aligned_cols=55 Identities=20% Similarity=0.417 Sum_probs=33.7
Q ss_pred CcccccccccCCCCcEE---ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDPVV---TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvv---t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.+..|-||-+--. =+. ..|...||..||.+.+.....+.-....++.|-+|.-.-
T Consensus 92 ~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3557777775432 111 158899999999998843221111123468999997654
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.97 E-value=15 Score=25.47 Aligned_cols=49 Identities=16% Similarity=0.494 Sum_probs=29.9
Q ss_pred CCCcccccccccCCCCcEEc--c--CC-CccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 37 DGSFFECNICLDSAQDPVVT--L--CG-HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt--~--CG-H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
..+...| ||........+. . |. ..||..|+. |.... ..++.||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKP------RGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCC------SSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCC------CCCEECCCCCccc
Confidence 3456678 898764443332 2 55 579999986 33211 2356999997643
No 98
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.46 E-value=7.8 Score=27.89 Aligned_cols=46 Identities=22% Similarity=0.477 Sum_probs=34.9
Q ss_pred CcccccccccCCCCc-EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQDP-VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.|.|..|...+... ....=|..||..|..+.+. + .|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-----------~-~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS-----------P-KCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC-----------C-BCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC-----------C-ccccCCCcccc
Confidence 578999999887653 4456788999999865432 4 89999998864
No 99
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=52.97 E-value=3.3 Score=29.81 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=27.6
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccccccCCC-----CcEEcc-CCCccCHHHHHHh
Q 024938 20 LKQKWSPTSAPTNVPEKDGSFFECNICLDSAQ-----DPVVTL-CGHLYCWPCIYKW 70 (260)
Q Consensus 20 ~~~~wk~~~~~~~~~~~~~~~~~C~ICld~~~-----~Pvvt~-CGH~fC~~Ci~~w 70 (260)
+.++|........... .....-||-|...+. ..|.-+ |++.||..|-..|
T Consensus 6 ~~e~y~~~l~e~~v~~-~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 6 SGALFHKKLTEGVLMR-DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCCSSSSCCCCSCCCS-CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred HHHHHHHHHHHHHHhc-CCCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3455555444333211 122223776655332 234554 9999999999888
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.21 E-value=7.3 Score=24.87 Aligned_cols=45 Identities=20% Similarity=0.586 Sum_probs=27.8
Q ss_pred cccccccCCCCcEEc---cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 42 ECNICLDSAQDPVVT---LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt---~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
.|.||.+.-.+-.++ .|...|+..|+..=+... ....+.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~------P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEV------PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSC------CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCC------CCCcEECcCccc
Confidence 478887654322222 588899999996533321 123568999965
No 101
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=52.03 E-value=10 Score=28.64 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCcccccccccCCC---CcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 38 GSFFECNICLDSAQ---DPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 38 ~~~~~C~ICld~~~---~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.+.|.|..|...+. ......=|..||..|..+.+... . .|..|...|..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~---------~-~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD---------G-LCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC---------E-ECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc---------c-ChhhcCCccCc
Confidence 36799999998885 35566788999999998766432 2 79999888764
No 102
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.86 E-value=13 Score=25.54 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
.....|..|.+.+.+.++..-+..|+..|+ .|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECY------------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTT------------------SCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcC------------------eeCCCCCCCC
Confidence 345688888887776666666777776663 6777777764
No 103
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=51.63 E-value=5.6 Score=26.75 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=30.2
Q ss_pred CCcccccccccCCCCcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 38 GSFFECNICLDSAQDPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
.....|.||.+.- -++. .|...|+..|+..-+..- ....+.||.|...
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~------p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEI------PNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSC------CSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcC------CCCccCChhhcCc
Confidence 3456799998632 1221 488889999987544321 1235689999654
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.14 E-value=14 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.471 Sum_probs=29.1
Q ss_pred CCCcccccccccCCCCcEEcc-----CC-CccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 37 DGSFFECNICLDSAQDPVVTL-----CG-HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~-----CG-H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
..+...| ||.+..... ++. |. ..||..|+. +... ...++.||.|+..-
T Consensus 33 ~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~------p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTK------PRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSC------CCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcC------CCCCEECcCccCcC
Confidence 3455677 998865433 333 54 578899985 3221 12357999997643
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.40 E-value=5.7 Score=28.83 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCCCcccccccccCC--CCcEEc---cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 36 KDGSFFECNICLDSA--QDPVVT---LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 36 ~~~~~~~C~ICld~~--~~Pvvt---~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
...+...|.||.+.- .+-.++ .|.-.|+..|+..-+. ....+.|+.|.......
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~v--------P~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI--------PEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSC--------CSSCCCCHHHHHHTTSC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCcc--------CCCceECccccCccchh
Confidence 345678999999764 212232 5888899999864321 12356899997655433
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=48.65 E-value=3.7 Score=34.36 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=31.0
Q ss_pred CcccccccccCCCCcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
....|.+|.+.=. ++. .|...||..|+..-+..- ....+.||.|+..-
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~------p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSF------PSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSC------CSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCC------CCCCEEeCceeCcc
Confidence 4456999985421 222 488899999987655422 13357999997643
No 107
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=48.54 E-value=5 Score=32.77 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=36.9
Q ss_pred CcccccccccCCCC---cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 39 SFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 39 ~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
+.|.|..|...+.+ .....=|..||..|..+.+..+ . .|..|...|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~---------~-~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---------G-ACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC---------E-ECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccC---------C-ccccCCCcccc
Confidence 67899999988764 5566778999999998766421 1 59999998864
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.49 E-value=12 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCCcccccccccCCCCc---E-EccCCCccCHHHHHH
Q 024938 37 DGSFFECNICLDSAQDP---V-VTLCGHLYCWPCIYK 69 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~P---v-vt~CGH~fC~~Ci~~ 69 (260)
..+...|.+|...|.-- . --.||.+||..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 33456899999887521 1 136999999999654
No 109
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.43 E-value=21 Score=25.08 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccc
Q 024938 38 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVA 97 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~ 97 (260)
.....|..|.+.+.+.++..-+..|+..|+ .|-.|+..+...
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECF------------------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTC------------------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecccEEEECCceECccCC------------------EecCCCCCCCCC
Confidence 445678888888777666667777777663 788887777543
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.38 E-value=9.5 Score=27.09 Aligned_cols=32 Identities=22% Similarity=0.511 Sum_probs=23.0
Q ss_pred CcccccccccCCCCc---E-EccCCCccCHHHHHHh
Q 024938 39 SFFECNICLDSAQDP---V-VTLCGHLYCWPCIYKW 70 (260)
Q Consensus 39 ~~~~C~ICld~~~~P---v-vt~CGH~fC~~Ci~~w 70 (260)
+...|.+|...|.-- . --.||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 445799999887632 1 1369999999997654
No 111
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.79 E-value=16 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCcccccccccCCCCc---E-EccCCCccCHHHHHHh
Q 024938 38 GSFFECNICLDSAQDP---V-VTLCGHLYCWPCIYKW 70 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P---v-vt~CGH~fC~~Ci~~w 70 (260)
.+...|.+|...|.-- . --.||.+||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999887532 1 1369999999997654
No 112
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.86 E-value=12 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=21.2
Q ss_pred cccccccCCCCc---EE-ccCCCccCHHHHHHh
Q 024938 42 ECNICLDSAQDP---VV-TLCGHLYCWPCIYKW 70 (260)
Q Consensus 42 ~C~ICld~~~~P---vv-t~CGH~fC~~Ci~~w 70 (260)
.|.+|...|.-- .. -.||.+||..|....
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 799999877532 11 369999999997543
No 113
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=44.84 E-value=6.4 Score=32.10 Aligned_cols=48 Identities=15% Similarity=0.341 Sum_probs=30.3
Q ss_pred cccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 40 FFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+..|.||.+.= +-+. -.|...||..|+..-+..- ....+.||.|+..-
T Consensus 4 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~~------p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTNF------PSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSSC------CSSCCCCTTTSCSS
T ss_pred CCccccCCCCC-eeeecCCCCcccCccccCCCCCCC------CCCCEECccccCcc
Confidence 45699998542 2111 1488889999986655422 12347999997654
No 114
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.54 E-value=12 Score=27.24 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 37 DGSFFECNICLDSAQDPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
......|.||.+.- + .+. .|--.|+..|+..=+..- .+..+.||.|...
T Consensus 22 d~n~~~C~vC~~~g-~-LL~CD~C~~~fH~~Cl~PpL~~~------P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPG-D-LVMCNQCEFCFHLDCHLPALQDV------PGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSS-C-CEECTTSSCEECTTSSSTTCCCC------CSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCC-C-EEECCCCCCceecccCCCCCCCC------cCCCcCCccccCC
Confidence 44566899999653 2 221 477789999986655321 2345689999653
No 115
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.11 E-value=2.7 Score=37.80 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=35.3
Q ss_pred CCcccccccccCCCCcEEc----cCC--CccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 38 GSFFECNICLDSAQDPVVT----LCG--HLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt----~CG--H~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
...-.||||.....-.++. .=| +.+|..|-.+|-... .+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R----------~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR----------IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT----------TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC----------cCCcCCCCC
Confidence 5678999999988766654 234 578999999998753 399999775
No 116
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.63 E-value=8.3 Score=29.79 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=22.7
Q ss_pred CcccccccccCCCCc---EE-ccCCCccCHHHHHHh
Q 024938 39 SFFECNICLDSAQDP---VV-TLCGHLYCWPCIYKW 70 (260)
Q Consensus 39 ~~~~C~ICld~~~~P---vv-t~CGH~fC~~Ci~~w 70 (260)
+...|.+|...|.-- .. -.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345799999887622 11 369999999997544
No 117
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.29 E-value=12 Score=30.48 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=33.1
Q ss_pred CcccccccccCCCCcEEc-----cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 39 SFFECNICLDSAQDPVVT-----LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt-----~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
-...|-||-+-- .++ .|-..||..||.+++.....+.-....++.|-+|.-.
T Consensus 78 ~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 355788887642 233 4778999999999887532111123456789999643
No 118
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=41.88 E-value=18 Score=24.49 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCcccccccccCCCC-cEEccCCCccCH-HHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 38 GSFFECNICLDSAQD-PVVTLCGHLYCW-PCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 38 ~~~~~C~ICld~~~~-Pvvt~CGH~fC~-~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.+.|.|..|...+.. .....=|..||. .|..+.+. . .|..|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-----------~-~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-----------P-KGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-----------C-CCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-----------c-cCCCcCCce
Confidence 367999999988775 455667889999 69876553 4 788886443
No 119
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.68 E-value=33 Score=22.75 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=27.1
Q ss_pred CcccccccccCCCC-cEEccCCCccCHHHHHHhhh
Q 024938 39 SFFECNICLDSAQD-PVVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 39 ~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~wl~ 72 (260)
+.|.|..|...+.. .....=|..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 57899999988864 35566789999999988775
No 120
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=39.83 E-value=22 Score=28.17 Aligned_cols=57 Identities=23% Similarity=0.497 Sum_probs=33.6
Q ss_pred CCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCcc-ccccCcCCCCcccc
Q 024938 37 DGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLD-ADEQQQNCPVCKAN 93 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~-~~~~~~~CPvCr~~ 93 (260)
...+..|.||.+-=.--.--.|-..||..||.+-+....-+.- .....+.|+.|+..
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3345689999865431111258889999999976642100000 11346799999753
No 121
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=39.76 E-value=12 Score=27.53 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=28.3
Q ss_pred CCcccccccccCCCCcEEc---cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 38 GSFFECNICLDSAQDPVVT---LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvvt---~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
.+...| ||.....+..++ .|...|+..|+..-+.. . ...+.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~------~-p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH------I-PDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS------C-CSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC------C-CCCEECCCCcC
Confidence 345677 887665544333 47778888887432111 1 12469999964
No 122
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=39.34 E-value=13 Score=27.61 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=30.6
Q ss_pred CCCcccccccccCCCC-cEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcc
Q 024938 37 DGSFFECNICLDSAQD-PVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCK 91 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~-Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr 91 (260)
..++..|.||.+.-.. ..+ ..|+..|+..|+...+..- .+..+.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~------~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPL------KRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTT------TSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccc------cccCccCCcCC
Confidence 3456789999876432 222 3699999999997654321 12345677664
No 123
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=38.90 E-value=39 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.753 Sum_probs=13.1
Q ss_pred HHHhHHHHHHHHHHHHHHHh
Q 024938 239 DKSLNRVSLFLFCCLVLCLL 258 (260)
Q Consensus 239 ~~~l~ri~~fl~~~~~lcll 258 (260)
.++=++.|++++||+|+.++
T Consensus 80 k~~rkk~~i~l~~~~i~~~i 99 (109)
T 3hd7_B 80 SKARRKKIMIIICCVILGII 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcceehHHHHHHHHHH
Confidence 34556677777777777654
No 124
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.01 E-value=17 Score=25.67 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=25.5
Q ss_pred cccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 40 FFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 40 ~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
...|..|...+.+.++..-+..|+..|+ .|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF------------------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEF------------------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTC------------------BCSSSCCBCSS
T ss_pred CCCCccCCCEecceEEEECCccccccCC------------------ccCCCCCCCCC
Confidence 3467777777766666666666666653 67777776653
No 125
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.10 E-value=5.5 Score=26.17 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=29.2
Q ss_pred CCcccccccccCCCCcEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 38 GSFFECNICLDSAQDPVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
.....|.||.+.- .++ -.|...|+..|+..-+... ....+.||.|..
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~------p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTI------PKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSC------CCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCC------CCCceEChhhhC
Confidence 3456799998752 222 2588889999987544321 123467888853
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.21 E-value=16 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCCcccccccccCCCCc---E-EccCCCccCHHHHHHhh
Q 024938 37 DGSFFECNICLDSAQDP---V-VTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 37 ~~~~~~C~ICld~~~~P---v-vt~CGH~fC~~Ci~~wl 71 (260)
..+...|.+|...|.-- . --.||+.||..|.....
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 34457999999887521 1 13699999999976543
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.71 E-value=25 Score=25.38 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=31.7
Q ss_pred CcccccccccCCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+...|.+|...|.-- .-..||++||..|...+..... .....+ .|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~R-VC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQY---LEKEAR-VCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETT---TTEEEE-ECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCC---CCCCCe-ECHHHHHHH
Confidence 345799999877521 1246999999999876543221 011224 677775544
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.93 E-value=11 Score=27.21 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=31.3
Q ss_pred CcccccccccCCCCc---E-EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDP---V-VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~P---v-vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+...|.+|...|.-- . --.||.+||..|....+.... ......+ .|-.|-..+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~--~g~~~~R-VC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPR--AGNTQQK-VCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETT--TTSEEEE-ECHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccc--cCCCcCE-ECHHHHHHH
Confidence 445899999877532 1 136999999999865432211 0011224 677775544
No 129
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.31 E-value=74 Score=23.64 Aligned_cols=36 Identities=22% Similarity=0.573 Sum_probs=28.0
Q ss_pred CCcccccccccCCC--CcEEccCCCccCHHHHHHhhhh
Q 024938 38 GSFFECNICLDSAQ--DPVVTLCGHLYCWPCIYKWLHV 73 (260)
Q Consensus 38 ~~~~~C~ICld~~~--~Pvvt~CGH~fC~~Ci~~wl~~ 73 (260)
.+.|.|..|...+. +.....=|..||..|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 36799999998884 3455667889999999887763
No 130
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=33.78 E-value=29 Score=19.89 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 024938 249 LFCCLVLCLLL 259 (260)
Q Consensus 249 l~~~~~lcll~ 259 (260)
=||++.+||+|
T Consensus 13 NfcLilICllL 23 (30)
T 1yod_A 13 NRCLREICQEL 23 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 131
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.38 E-value=39 Score=26.33 Aligned_cols=55 Identities=20% Similarity=0.476 Sum_probs=31.2
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCC-ccccccCcCCCCcccc
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSS-LDADEQQQNCPVCKAN 93 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s-~~~~~~~~~CPvCr~~ 93 (260)
.+..|.||.+--.-..--.|-..||..||.+-+....-+ .......+.|++|+-.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 445699998653211112588999999999753211000 0001346799999553
No 132
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=32.76 E-value=5.2 Score=26.67 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=29.8
Q ss_pred CcccccccccCCCCcEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDPVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.+..|.||.+. ..++ -.|...|+..|+..-+... ....+.||.|....
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~------p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTI------PKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSC------CCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCC------CCCceEChhccChh
Confidence 45678899874 2222 1588889999987544321 12356899996544
No 133
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=32.63 E-value=24 Score=21.57 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhh
Q 024938 239 DKSLNRVSLFLFCCLVLCLLL 259 (260)
Q Consensus 239 ~~~l~ri~~fl~~~~~lcll~ 259 (260)
|.-|.++..||+++.++..++
T Consensus 4 D~qL~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 4 DVQLAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999998887665
No 134
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.34 E-value=9.5 Score=34.86 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=0.0
Q ss_pred CcccccccccCCCCc----EEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 39 SFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 39 ~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
+...|.+|...+.-- .-..||+.||..|...++.... ......+ .|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~--~~~~~~r-vC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKY--LKDRMAK-VCDGCFGEL 430 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCC--CCCCcCE-ecHHHHHHH
Confidence 456899999877521 1236999999999976553321 0111224 787775544
No 135
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.01 E-value=16 Score=25.33 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCCcccccccccCC---CCcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 37 DGSFFECNICLDSA---QDPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 37 ~~~~~~C~ICld~~---~~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
..+...|.||.+.- .+.+++ .|.-.|+..|+..-.. .+..+.|+.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~v--------P~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI--------PEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSC--------CSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcC--------CCCCcCCccCcC
Confidence 44567899998653 233333 5888999999864221 123568998865
No 136
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.99 E-value=17 Score=24.12 Aligned_cols=32 Identities=28% Similarity=0.686 Sum_probs=14.5
Q ss_pred CcccccccccCCCCc-EEccCCCccCHHHHHHh
Q 024938 39 SFFECNICLDSAQDP-VVTLCGHLYCWPCIYKW 70 (260)
Q Consensus 39 ~~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~w 70 (260)
+.|.|..|...+.+- ....-|..||..|..+.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 345555555444432 22234445555555443
No 137
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.97 E-value=11 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=32.0
Q ss_pred CCCCcccccccccCCCC-cEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 36 KDGSFFECNICLDSAQD-PVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~-Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
...+...|.||.+.-.+ .+++ .|...|+..|+..-+..- ....+.||.|...
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~------P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEI------PRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSC------CSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccC------CCCCcCCccCcCc
Confidence 34456679999876432 2222 488889999986433311 1235689999654
No 138
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.47 E-value=8.8 Score=26.09 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=29.7
Q ss_pred CCcccccccccCCCCcEE-ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 38 GSFFECNICLDSAQDPVV-TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 38 ~~~~~C~ICld~~~~Pvv-t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
..+..|.||.+.- +-+. -.|...|+..|+..-+..- ....+.||.|..
T Consensus 6 ~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~------P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREI------PSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSC------CSSCCCCHHHHH
T ss_pred CCCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcC------CCCCeECccccC
Confidence 3456899998742 2111 1488889999986544321 123568999964
No 139
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=31.03 E-value=14 Score=30.35 Aligned_cols=47 Identities=15% Similarity=0.408 Sum_probs=28.2
Q ss_pred ccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
..|.+|.+.-.-=.--.|-..||..|+..-+..- ....+.||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~------p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDV------PGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSC------CCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccC------CCCCCCCcCccCC
Confidence 4688888543200011477789999986544321 1335689999765
No 140
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=30.23 E-value=19 Score=26.50 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.3
Q ss_pred CChhhHhHHhHHHHHh
Q 024938 227 NNPRIRRQEMELDKSL 242 (260)
Q Consensus 227 ~~pr~r~~~~~~~~~l 242 (260)
.+|.||||.|....|+
T Consensus 94 ASPqMRRQLmRLRNs~ 109 (113)
T 3e56_A 94 ASPQMRRQLMRLRNAV 109 (113)
T ss_dssp SCHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHhccc
Confidence 7899999999876554
No 141
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.07 E-value=32 Score=22.79 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=15.0
Q ss_pred CcccccccccCCCC-cEEccCCCccCHHHHHH
Q 024938 39 SFFECNICLDSAQD-PVVTLCGHLYCWPCIYK 69 (260)
Q Consensus 39 ~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~ 69 (260)
+.|.|..|...+.. .....=|..||..|..+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 34555555554443 22333445555555544
No 142
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.94 E-value=43 Score=22.92 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=14.3
Q ss_pred ccccccccCCCCcEEccCCCccCHHH
Q 024938 41 FECNICLDSAQDPVVTLCGHLYCWPC 66 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~fC~~C 66 (260)
..|.-|...+.+.++..-|..|+..|
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C 41 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH 41 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT
T ss_pred CCCccCCCEecceEEEECcceeCCCC
Confidence 45666666655544444555555444
No 143
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.77 E-value=35 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=16.6
Q ss_pred CcccccccccCCCC-cEEccCCCccCHHHHHHhh
Q 024938 39 SFFECNICLDSAQD-PVVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 39 ~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~wl 71 (260)
+.|.|..|...+.. .....=+..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 34566666655533 2223345566666654433
No 144
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.62 E-value=1.4e+02 Score=20.58 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=29.4
Q ss_pred CCcccccccccCCC--CcEE--ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 38 GSFFECNICLDSAQ--DPVV--TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 38 ~~~~~C~ICld~~~--~Pvv--t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.+...| ||..... ...+ -.|..-|+..|+.--.... .....+.||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~-----~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA-----VDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH-----TTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc-----cCCCeEECCCccccc
Confidence 345566 8987653 2222 2588889999984322111 001246999997654
No 145
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.59 E-value=41 Score=22.61 Aligned_cols=39 Identities=28% Similarity=0.767 Sum_probs=26.0
Q ss_pred cccccccCCCCcEE---ccCCCccCHHHHHHhhhhhcCCccccccCcCCCCc
Q 024938 42 ECNICLDSAQDPVV---TLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVC 90 (260)
Q Consensus 42 ~C~ICld~~~~Pvv---t~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvC 90 (260)
.|--|+..+.+..+ ..|++.||.+|= .+++.. -. .||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~--------Lh-~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDS--------LH-SCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTT--------SC-SSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchh-HHHHhh--------cc-CCcCC
Confidence 48888877765442 469999999994 333322 14 88887
No 146
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=28.59 E-value=1.6e+02 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=22.8
Q ss_pred EccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccccccccccccCCC
Q 024938 55 VTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGG 107 (260)
Q Consensus 55 vt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 107 (260)
.|+|..-||..|- +.|.+| +..+-|-..|++.+
T Consensus 19 ~T~C~~CyCKkCc-----------------~HCq~C---F~~KGLGIsYgRkk 51 (86)
T 1tac_A 19 KTASNRAHAKKSA-----------------YHSQVA---FITKGLGISYGRKK 51 (86)
T ss_dssp TTCSSCSSTTTTT-----------------TTCCCS---CSSTTSSSSSCCCS
T ss_pred CCCCCCceecchh-----------------hhhhHH---HccCCCceEecccc
Confidence 4678888998874 267777 66666666666643
No 147
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.38 E-value=25 Score=27.05 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCcccccccccCCCCc----EEccCCCccCHHHHHHhh
Q 024938 38 GSFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl 71 (260)
.+...|.+|...|.-- .--.||.+||..|.....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3446899999887532 123699999999975543
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.34 E-value=33 Score=28.88 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=23.7
Q ss_pred CcccccccccCCCCc----EEccCCCccCHHHHHHhh
Q 024938 39 SFFECNICLDSAQDP----VVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 39 ~~~~C~ICld~~~~P----vvt~CGH~fC~~Ci~~wl 71 (260)
+...|.+|...|.-- .-..||.+||..|-....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 445899999877521 124699999999976543
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.00 E-value=36 Score=22.62 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.4
Q ss_pred cccccccCCC
Q 024938 42 ECNICLDSAQ 51 (260)
Q Consensus 42 ~C~ICld~~~ 51 (260)
.|..|...+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 3444444443
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.09 E-value=27 Score=22.82 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=27.1
Q ss_pred ccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..|..|...+.+.++..-|..|+..|. .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF------------------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF------------------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC------------------BCTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCcC------------------EECCCCCCCCC
Confidence 468888887776666666766766663 78888877753
No 151
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.98 E-value=36 Score=25.74 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=10.4
Q ss_pred cccccccccCCCCc
Q 024938 40 FFECNICLDSAQDP 53 (260)
Q Consensus 40 ~~~C~ICld~~~~P 53 (260)
...|.-|...+.+.
T Consensus 61 ~~~C~~C~~~I~~~ 74 (123)
T 2l4z_A 61 WKRCAGCGGKIADR 74 (123)
T ss_dssp CSBBSSSSSBCCSS
T ss_pred CCcCcCCCCCcCCc
Confidence 45788888877665
No 152
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.84 E-value=65 Score=21.04 Aligned_cols=34 Identities=18% Similarity=0.518 Sum_probs=26.0
Q ss_pred CcccccccccCCCC-cEEccCCCccCHHHHHHhhh
Q 024938 39 SFFECNICLDSAQD-PVVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 39 ~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~wl~ 72 (260)
+.|.|..|...+.. .....=|..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 57899999988764 34456688999999877664
No 153
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=25.60 E-value=28 Score=21.14 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhh
Q 024938 239 DKSLNRVSLFLFCCLVLCLLL 259 (260)
Q Consensus 239 ~~~l~ri~~fl~~~~~lcll~ 259 (260)
|.-|.++..||+++.++..++
T Consensus 4 D~qL~~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 4 DEQLNSLAITFGIVMMTLIVI 24 (36)
T ss_dssp SCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445888999999998887655
No 154
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.52 E-value=12 Score=25.05 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCcccccccccCCC---CcEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccc
Q 024938 38 GSFFECNICLDSAQ---DPVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANI 94 (260)
Q Consensus 38 ~~~~~C~ICld~~~---~Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v 94 (260)
.+...|.||..... +.+++ .|...|+..|+..-+.... ...+..+.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~---~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSV---IDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHH---HHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccc---cCCCCCEECCCCcCcc
Confidence 34568999997632 23332 5888999999876443210 0012356899996543
No 155
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.50 E-value=4.3 Score=30.42 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=28.1
Q ss_pred ccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
..||+|...+.. .=++.+|..|-..+... . .||.|..++..
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~----------a-~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEMK----------A-LCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEEE----------E-ECTTTCSBCEE
T ss_pred ccCccCCCccee----cCCEEECccccchhhcc----------c-cCcchhhHHHH
Confidence 799999987652 12344588886554432 3 89999988853
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.08 E-value=39 Score=22.99 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=13.2
Q ss_pred cccccccCCC--CcEEccCCCccCHHH
Q 024938 42 ECNICLDSAQ--DPVVTLCGHLYCWPC 66 (260)
Q Consensus 42 ~C~ICld~~~--~Pvvt~CGH~fC~~C 66 (260)
.|..|...+. +.++..-+..|+..|
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C 43 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDC 43 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTT
T ss_pred cCccCCcccccCceEEEECcccccccc
Confidence 5666666555 344444455555444
No 157
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.97 E-value=29 Score=23.70 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=25.6
Q ss_pred cccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 42 ECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.|..|...+.+.++..-+..|+..|+ .|-.|+..+..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF------------------~C~~C~~~L~~ 53 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCF------------------VCAVCRLPFPP 53 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTS------------------SCSSSCCCCCS
T ss_pred cCccccCEeccceEEECCceeCccCC------------------ccccCCCCCCC
Confidence 78888877766556566666666663 78888777754
No 158
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.83 E-value=64 Score=23.65 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=27.0
Q ss_pred CcccccccccCCCC---cEEccCCCccCHHHHHHhhh
Q 024938 39 SFFECNICLDSAQD---PVVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 39 ~~~~C~ICld~~~~---Pvvt~CGH~fC~~Ci~~wl~ 72 (260)
+.|.|..|...+.+ .....=|..||..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 67999999988864 44556788999999987665
No 159
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.44 E-value=42 Score=22.72 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=10.9
Q ss_pred ccccccccCCCC-cEEccCCCccCHHHHH
Q 024938 41 FECNICLDSAQD-PVVTLCGHLYCWPCIY 68 (260)
Q Consensus 41 ~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~ 68 (260)
|.|..|...+.. .....=|..||..|..
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 70 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFG 70 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHH
Confidence 444444443321 2222333444444443
No 160
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.34 E-value=34 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=26.4
Q ss_pred ccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 41 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 41 ~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
..|.-|...+...++..-+..|+..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF------------------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCA------------------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTS------------------CCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcC------------------EeCCCCCCCC
Confidence 468888887776666666777776663 7778877765
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.33 E-value=58 Score=22.75 Aligned_cols=34 Identities=26% Similarity=0.618 Sum_probs=21.6
Q ss_pred CcccccccccCCCCc-EEccCCCccCHHHHHHhhh
Q 024938 39 SFFECNICLDSAQDP-VVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 39 ~~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~wl~ 72 (260)
+.|.|..|...+..- ....=|..||..|..+.+.
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 467777777666542 3344567788888765443
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.59 E-value=38 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.475 Sum_probs=23.9
Q ss_pred ccccccccCCCC----cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccccc
Q 024938 41 FECNICLDSAQD----PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANIS 95 (260)
Q Consensus 41 ~~C~ICld~~~~----Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~ 95 (260)
..|..|...+.+ .++..-+..|+..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF------------------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF------------------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC------------------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC------------------ChhhCCCcCC
Confidence 367777777664 455556666666653 6777777665
No 163
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.44 E-value=58 Score=26.21 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=27.3
Q ss_pred CCcccccccccCCCCc-EEccCCCccCHHHHHHhhh
Q 024938 38 GSFFECNICLDSAQDP-VVTLCGHLYCWPCIYKWLH 72 (260)
Q Consensus 38 ~~~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~wl~ 72 (260)
.+.|.|..|...+... ....=|..||..|..+.+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 3689999999888754 4455688999999988664
No 164
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=22.83 E-value=14 Score=26.09 Aligned_cols=46 Identities=20% Similarity=0.461 Sum_probs=27.6
Q ss_pred cccccccCCCCcEEc---cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 42 ECNICLDSAQDPVVT---LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt---~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
.|.||...-..-.++ .|...|+..|+..-|.... .+..+.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P-----~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVP-----SEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCC-----SSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCC-----CCCceECcCccc
Confidence 566776554333333 4888899999876554221 122268999975
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.34 E-value=40 Score=22.24 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=12.6
Q ss_pred cccccccccCCCCc-EEccCCCccCHHHHHH
Q 024938 40 FFECNICLDSAQDP-VVTLCGHLYCWPCIYK 69 (260)
Q Consensus 40 ~~~C~ICld~~~~P-vvt~CGH~fC~~Ci~~ 69 (260)
.|.|..|...+... ....=|..||..|..+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 33 CFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TTCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CCcccccCCccCCCccCccCCeEECHHHHhH
Confidence 34455554444332 2223344455555433
No 166
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.30 E-value=23 Score=26.47 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=28.8
Q ss_pred cccccccccCCCC--cEEc--cCCCccCHHHHHHhhhhhcCCccccccCcCCCCccc
Q 024938 40 FFECNICLDSAQD--PVVT--LCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKA 92 (260)
Q Consensus 40 ~~~C~ICld~~~~--Pvvt--~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~ 92 (260)
...|.||.+.-.+ .++. .|...|+..|+..-+..- ....+.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~------P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRM------PKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSC------CSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCC------CCCCeECCCCCC
Confidence 3367788764322 2222 488899999986544422 123568999974
No 167
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.20 E-value=32 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=12.9
Q ss_pred ccccccccCCC-CcEEccCCCccCHHH
Q 024938 41 FECNICLDSAQ-DPVVTLCGHLYCWPC 66 (260)
Q Consensus 41 ~~C~ICld~~~-~Pvvt~CGH~fC~~C 66 (260)
..|..|.+.+. ...+..-+..|+..|
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~C 36 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFC 36 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCC
Confidence 35666666554 333444444444444
No 168
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.11 E-value=62 Score=26.03 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=29.6
Q ss_pred CcccccccccCCCC-cEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCcccc
Q 024938 39 SFFECNICLDSAQD-PVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKAN 93 (260)
Q Consensus 39 ~~~~C~ICld~~~~-Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~ 93 (260)
+.|.|..|...+.. .....=|..||..|..+.+. . .|..|...
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-----------~-kc~~C~~~ 184 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-----------P-KGFGFGQG 184 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-----------C-CCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC-----------C-cCCCCCCc
Confidence 56778888777653 34455678888888877664 3 77777654
No 169
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.09 E-value=34 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=16.9
Q ss_pred CcccccccccCCC--CcEEc-cCCCccCHHHHHHhh
Q 024938 39 SFFECNICLDSAQ--DPVVT-LCGHLYCWPCIYKWL 71 (260)
Q Consensus 39 ~~~~C~ICld~~~--~Pvvt-~CGH~fC~~Ci~~wl 71 (260)
+.|.|..|...+. +...+ .=|..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 4456666665553 23332 445566666655544
No 170
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.14 E-value=98 Score=19.84 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=26.8
Q ss_pred CCCCcccccccccCCCCcEEccCCCccCHHHHHHhhhhhcCCccccccCcCCCCccccccc
Q 024938 36 KDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISV 96 (260)
Q Consensus 36 ~~~~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl~~~~~s~~~~~~~~~CPvCr~~v~~ 96 (260)
.....+.|.+|...+... .-+.+.+.... .+..+.|++|.+.+..
T Consensus 13 ~~~~~~~C~~C~k~f~~~-----------~~l~~H~~~H~-----~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYK-----------GNLASHKTVHT-----GEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCCSBCCTTSSCCBSCH-----------HHHHHHHHHHC-----CCCSEECTTTCCEESC
T ss_pred CCCCCeECCCCCceeCCH-----------HHHHHHHHHcC-----CCCCEECCCCCchhCC
Confidence 344568999988877653 22333333221 1224589999887754
No 171
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.10 E-value=51 Score=22.65 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=19.4
Q ss_pred CcccccccccCCCCcEEccCCCccCHHHHHHhh
Q 024938 39 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWL 71 (260)
Q Consensus 39 ~~~~C~ICld~~~~Pvvt~CGH~fC~~Ci~~wl 71 (260)
+.|.|..|...+..-....=|..||..|..+.+
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 41 SCFKCQTCSVILTGEYISKDGVPYCESDYHAQF 73 (80)
T ss_dssp TTCBCSSSCCBCSSCCEEETTEEECTTHHHHHT
T ss_pred ccCCcCcCCCCcCCCeEEECCEEECHHHHHHHc
Confidence 456777776666543334455667777765544
No 172
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.97 E-value=21 Score=27.01 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=7.5
Q ss_pred CCCCccccc
Q 024938 86 NCPVCKANI 94 (260)
Q Consensus 86 ~CPvCr~~v 94 (260)
.||.|+..-
T Consensus 86 rCP~CkSe~ 94 (105)
T 2gmg_A 86 RCPKCKSEW 94 (105)
T ss_dssp SCSSSCCCC
T ss_pred CCcCCCCCc
Confidence 899998764
No 173
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.48 E-value=43 Score=22.67 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=4.7
Q ss_pred cccccccccCC
Q 024938 40 FFECNICLDSA 50 (260)
Q Consensus 40 ~~~C~ICld~~ 50 (260)
.|.|..|...+
T Consensus 41 CF~C~~C~~~L 51 (80)
T 1x3h_A 41 CFVCGDCFTSF 51 (80)
T ss_dssp TCBCSSSCCBS
T ss_pred cCChhhCCCCC
Confidence 34444444443
No 174
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.43 E-value=35 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=9.2
Q ss_pred cccccccCCCCcEEccCCCccCH
Q 024938 42 ECNICLDSAQDPVVTLCGHLYCW 64 (260)
Q Consensus 42 ~C~ICld~~~~Pvvt~CGH~fC~ 64 (260)
.|..|...+.+.++..-+..|+.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~ 39 (81)
T 2dlo_A 17 KCATCSQPILDRILRAMGKAYHP 39 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECT
T ss_pred ccccCCCeecceeEEECCccccH
Confidence 44444444443333333333333
No 175
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.21 E-value=86 Score=18.05 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 024938 245 VSLFLFCCLVLCLL 258 (260)
Q Consensus 245 i~~fl~~~~~lcll 258 (260)
+.+.|.|.+++|||
T Consensus 12 Ft~vLI~vlLi~ll 25 (31)
T 1jdm_A 12 FTIVLITVILMWLL 25 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555555
No 176
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=20.03 E-value=33 Score=25.90 Aligned_cols=19 Identities=11% Similarity=0.301 Sum_probs=12.7
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 024938 238 LDKSLNRVSLFLFCCLVLC 256 (260)
Q Consensus 238 ~~~~l~ri~~fl~~~~~lc 256 (260)
+|+.|+|+-.+|.++|+++
T Consensus 47 ~~~~L~K~T~ilailF~v~ 65 (107)
T 3dl8_E 47 VETILTKATYWLGALFLVL 65 (107)
T ss_dssp CCCCTTHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 5778888877766555443
Done!