Query 024940
Match_columns 260
No_of_seqs 59 out of 61
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsa_A Pleckstrin homology dom 72.0 26 0.00088 28.6 9.0 79 88-176 44-124 (126)
2 2hth_B Vacuolar protein sortin 50.0 70 0.0024 25.8 7.8 91 81-180 34-132 (140)
3 2cay_A VPS36 PH domain, vacuol 36.1 95 0.0032 25.3 6.6 88 83-181 49-137 (145)
4 3ha4_A MIX1; TPR-like, helix-t 23.1 39 0.0013 28.2 2.1 19 162-180 91-109 (154)
5 3hsa_A Pleckstrin homology dom 16.8 1E+02 0.0036 25.0 3.3 54 97-160 37-95 (126)
6 1wz4_A Major surface antigen; 14.9 44 0.0015 20.6 0.5 10 102-111 15-24 (26)
7 2kl8_A OR15; structural genomi 12.9 1.1E+02 0.0039 23.1 2.4 27 154-182 41-67 (85)
8 2jo1_A Phospholemman; FXYD1, N 12.6 2.4E+02 0.0084 21.2 4.1 36 38-75 4-40 (72)
9 1kd8_B GABH BLL, GCN4 acid bas 12.1 2.8E+02 0.0094 18.4 3.7 23 225-247 13-35 (36)
10 3kz5_E Protein SOPB; partition 11.8 1E+02 0.0036 21.9 1.7 11 236-246 37-47 (52)
No 1
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=72.01 E-value=26 Score=28.57 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=55.3
Q ss_pred eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEe-ehhhhhhhcc-eeEEEEeccCCCCCCCCeeeecCCCh
Q 024940 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE-QGYLQSLFGV-YSLRIENVGVRRPPSDDVQIQGVANP 165 (260)
Q Consensus 88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~-QG~Lqr~FGl-~slrIETAG~s~~~~~di~I~Gi~~p 165 (260)
.+.+|.+.++..=..|+. |-=+.-..+||.+|+++++| .|- |.+ +.|+|-..|...| -++++.+-.|.
T Consensus 44 ~~iFTnkRLI~vD~QG~T----GkK~~~~siPY~sI~~~siETAG~----fDlDaElki~isg~~~p--i~~~f~k~~di 113 (126)
T 3hsa_A 44 LFVFTSXRLILIDXQGVT----GXXVSYHSIPYXAIVHFQVETAGT----FDMDAELXLWISGQHEP--LVXELXRGTDV 113 (126)
T ss_dssp EEEEESSEEEEEEEESTT----SCEEEEEEEEGGGEEEEEEEEEST----TSCEEEEEEEETTCSSC--EEEEECTTSCH
T ss_pred eEEEccchheEEecCcCc----ccceEEEEeccceeeEEEEecccc----ccCCceEEEEEcCCceE--EEEeccCcccH
Confidence 455555555554344554 32233358999999999999 564 554 3588887777644 68899999999
Q ss_pred hhHHHHHHHHH
Q 024940 166 SDFRKAVLTRL 176 (260)
Q Consensus 166 ~~fRk~Il~~~ 176 (260)
.++-+++....
T Consensus 114 ~~i~k~La~~v 124 (126)
T 3hsa_A 114 VGIQXTIARYA 124 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 2
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=49.98 E-value=70 Score=25.76 Aligned_cols=91 Identities=7% Similarity=0.133 Sum_probs=54.2
Q ss_pred hhccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCC-------C
Q 024940 81 RKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRP-------P 153 (260)
Q Consensus 81 ~~d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETAG~s~~-------~ 153 (260)
+..+++-.+|+|.|-|+|- ...-- ..--.+||..|.++.++|+.+-+-=.+ ++.+..++..++ .
T Consensus 34 k~~~k~G~l~LTshRli~~-d~~~~-------~~s~~lpl~~v~~~e~~~~~f~~s~Ki-~l~l~~~~~~~~~gp~~~s~ 104 (140)
T 2hth_B 34 KIKFDAGTLLLSTHRLIWR-DQKNH-------ECCMAILLSQIVFIEEQAAGIGKSAKI-VVHLHPAPPNKEPGPFQSSK 104 (140)
T ss_dssp SSCCCCEEEEEESSEEEEE-ETTCC-------SCCEEEEGGGEEEEEEECCTTSSCCEE-EEEECCCCCCSSSCCCSTTS
T ss_pred CCCCcCCEEEEecCEEEEe-cCCCC-------ceEEEEEhHHeeeeeeeccccccCceE-EEEecCCCccCCCCCccccc
Confidence 3456777999999999994 33221 123489999999999999974221111 244444332222 1
Q ss_pred CCCeeeecC-CChhhHHHHHHHHHhhcc
Q 024940 154 SDDVQIQGV-ANPSDFRKAVLTRLSNMT 180 (260)
Q Consensus 154 ~~di~I~Gi-~~p~~fRk~Il~~~~~~~ 180 (260)
.+.+++..- -.+++|-.+..+.+....
T Consensus 105 ~~~~kLsFr~Gg~~eF~~~L~~al~~k~ 132 (140)
T 2hth_B 105 NSYIKLSFKEHGQIEFYRRLSEEMTQRR 132 (140)
T ss_dssp CCEEEEEETTSCHHHHHHHHHHHHHHCC
T ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhh
Confidence 234555432 345777777766655443
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=36.10 E-value=95 Score=25.26 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=55.0
Q ss_pred ccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeeeecC
Q 024940 83 DIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV 162 (260)
Q Consensus 83 d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETAG~s~~~~~di~I~Gi 162 (260)
.+++-.+|+|.+-|+|- ...- |. ..--.+||..|+|+.++|+.+-+- ..+++.-... ..+.+.+++.--
T Consensus 49 ~~k~G~lyLTshRIIyv-~~~~--~~----~~SfslPL~~v~~~e~~~~~fg~s---~Ki~l~~~p~-~~~~~~~KLsFk 117 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYI-DDAK--PT----QNSLGLELDDLAYVNYSSGFLTRS---PRLILFFKDP-SSSTEFVQLSFR 117 (145)
T ss_dssp TCSSEEEEEESSEEEEE-ESSC--HH----HHCEEEEGGGEEEEEEECSSSSSS---CEEEEEESSC-SSTTCCEEEEES
T ss_pred CCCccEEEEEcCeEEEe-cCCC--Cc----ceEEEeEhHheeeeeEEcCccccC---ceEEEEecCC-CCCceEEEEEEc
Confidence 45666999999999994 3221 11 133489999999999999986441 2222222111 223567777543
Q ss_pred -CChhhHHHHHHHHHhhcch
Q 024940 163 -ANPSDFRKAVLTRLSNMTN 181 (260)
Q Consensus 163 -~~p~~fRk~Il~~~~~~~~ 181 (260)
--+.+|..+..+.+.+..-
T Consensus 118 ~GGa~eF~~~l~~al~~~~~ 137 (145)
T 2cay_A 118 KSDGVLFSQATERALENILT 137 (145)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 2347888877777666543
No 4
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=23.15 E-value=39 Score=28.19 Aligned_cols=19 Identities=47% Similarity=0.772 Sum_probs=17.8
Q ss_pred CCChhhHHHHHHHHHhhcc
Q 024940 162 VANPSDFRKAVLTRLSNMT 180 (260)
Q Consensus 162 i~~p~~fRk~Il~~~~~~~ 180 (260)
++||+.+||-|++|+.|..
T Consensus 91 vadpd~~rkevlmqllnvk 109 (154)
T 3ha4_A 91 VADPDEMRKEVLMQLLNVK 109 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhh
Confidence 7899999999999999986
No 5
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=16.83 E-value=1e+02 Score=24.95 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=33.4
Q ss_pred EeeecCCccccccccceeeEEEeCCCee-----eEEEeehhhhhhhcceeEEEEeccCCCCCCCCeeee
Q 024940 97 VYKVTRPVPFPCFGVLKKEKHVLLPSVQ-----DIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQ 160 (260)
Q Consensus 97 vYKv~rgv~fp~~gv~~~Ek~VPL~~Iq-----dV~I~QG~Lqr~FGl~slrIETAG~s~~~~~di~I~ 160 (260)
.||..|..+ +-+.+.+-+-..| .+.+.-=|..+ |..+.+||||.... .+|++|-
T Consensus 37 ayk~iRD~~------iFTnkRLI~vD~QG~TGkK~~~~siPY~s---I~~~siETAG~fDl-DaElki~ 95 (126)
T 3hsa_A 37 AYXMVRDLF------VFTSXRLILIDXQGVTGXXVSYHSIPYXA---IVHFQVETAGTFDM-DAELXLW 95 (126)
T ss_dssp EEECSSEEE------EEESSEEEEEEEESTTSCEEEEEEEEGGG---EEEEEEEEESTTSC-EEEEEEE
T ss_pred EehhcCceE------EEccchheEEecCcCcccceEEEEeccce---eeEEEEeccccccC-CceEEEE
Confidence 466667766 3333343333344 44454556555 89999999999854 4677773
No 6
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=14.89 E-value=44 Score=20.63 Aligned_cols=10 Identities=40% Similarity=0.618 Sum_probs=8.1
Q ss_pred CCcccccccc
Q 024940 102 RPVPFPCFGV 111 (260)
Q Consensus 102 rgv~fp~~gv 111 (260)
||.+||++|-
T Consensus 15 rgly~pAGGS 24 (26)
T 1wz4_A 15 RGLYFPAGGX 24 (26)
T ss_dssp GGGSCCSCC-
T ss_pred cccccCCccc
Confidence 8889999983
No 7
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=12.89 E-value=1.1e+02 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=22.8
Q ss_pred CCCeeeecCCChhhHHHHHHHHHhhcchh
Q 024940 154 SDDVQIQGVANPSDFRKAVLTRLSNMTNE 182 (260)
Q Consensus 154 ~~di~I~Gi~~p~~fRk~Il~~~~~~~~e 182 (260)
.-+|.|+|+ |+..||..-.++.++..|
T Consensus 41 dleiritgv--peqvrkelakeaerlake 67 (85)
T 2kl8_A 41 DLEIRITGV--PEQVRKELAKEAERLAKE 67 (85)
T ss_dssp CEEEEEESC--CHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEecC--hHHHHHHHHHHHHHHHHh
Confidence 457888997 789999999999998864
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=12.62 E-value=2.4e+02 Score=21.18 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.6
Q ss_pred chhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 024940 38 QEKEDNFVQYQTAQWVLYSLLL-ILAWGIGLFMLLYLPV 75 (260)
Q Consensus 38 ~e~~~~~vKY~tviwl~~slll-ilawgvGilmLL~lPi 75 (260)
+|..+-|-.|.++.--- |.+ .+++++||+++|.-..
T Consensus 4 kE~dPF~YDY~tLRiGG--LifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 4 KEHDPFTYDYQSLQIGG--LVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHSGGGCSTHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccchHHhhccc--hHHHHHHHHHHHHHHHcCcc
Confidence 45556666788877543 333 6778899999988533
No 9
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=12.09 E-value=2.8e+02 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.1
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHh
Q 024940 225 VLQKLEEVGSSVKRVQALIEEQC 247 (260)
Q Consensus 225 lL~kLeEv~~SvKrie~ll~~~~ 247 (260)
||++..+.++-|-|+..++.++.
T Consensus 13 Ll~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 13 LKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhcccc
Confidence 68899999999999999998764
No 10
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=11.75 E-value=1e+02 Score=21.93 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q 024940 236 VKRVQALIEEQ 246 (260)
Q Consensus 236 vKrie~ll~~~ 246 (260)
+|+||+||++-
T Consensus 37 IeKIE~lL~e~ 47 (52)
T 3kz5_E 37 IEKIEAILKEL 47 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57888888764
Done!