Query 024940
Match_columns 260
No_of_seqs 59 out of 61
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 17:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2caya1 b.55.1.12 (A:1-99,A:25 56.6 3.5 0.00026 31.4 3.0 46 83-135 41-86 (130)
2 d2gcla1 b.55.1.10 (A:237-474) 32.3 15 0.0011 30.0 3.3 57 88-163 158-218 (238)
3 d2hthb1 b.55.1.12 (B:3-131) Va 27.0 28 0.002 25.7 3.8 44 82-133 31-74 (129)
4 d3dcxa1 b.55.1.13 (A:9-124) Un 22.0 1.4E+02 0.01 21.9 8.8 78 88-175 35-114 (116)
5 d1r31a1 d.58.20.1 (A:111-220) 18.0 33 0.0024 25.4 2.5 27 155-181 4-30 (110)
6 d1zsqa1 b.55.1.8 (A:74-198) My 10.6 2E+02 0.014 20.5 5.1 37 88-131 31-67 (125)
7 d2coaa1 b.55.1.1 (A:8-119) Pro 10.3 1.7E+02 0.013 19.3 4.5 60 82-148 15-76 (112)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 9.8 89 0.0065 20.9 2.7 18 58-75 6-23 (158)
9 d1v54d_ f.23.1.1 (D:) Mitochon 9.7 60 0.0043 25.1 1.8 27 28-55 52-78 (144)
10 d1maia_ b.55.1.1 (A:) Phosphol 9.5 72 0.0052 21.7 2.1 37 87-129 29-67 (119)
No 1
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.60 E-value=3.5 Score=31.44 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=34.8
Q ss_pred ccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhh
Q 024940 83 DIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQS 135 (260)
Q Consensus 83 d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr 135 (260)
.+++-.+|+|.|-|+|- ..+-- ...--.+||..|+++.+.|+.+-|
T Consensus 41 ~~~~G~l~LTshRiI~v-~~~~~------~~~S~slpL~~i~~~e~~~~~~~s 86 (130)
T d2caya1 41 QRQRGRIFLTSQRIIYI-DDAKP------TQNSLGLELDDLAYVNYSSGFLTR 86 (130)
T ss_dssp TCSSEEEEEESSEEEEE-ESSCH------HHHCEEEEGGGEEEEEEECSSSSS
T ss_pred cccCceEEEEeeEEEEe-cCCCC------ceeEEEeEhhheeEeEEEccccCC
Confidence 35677999999999995 33321 223458999999999999987654
No 2
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.28 E-value=15 Score=29.95 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=37.7
Q ss_pred eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEee----hhhhhhhcceeEEEEeccCCCCCCCCeeeecCC
Q 024940 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQ----GYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVA 163 (260)
Q Consensus 88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~Q----G~Lqr~FGl~slrIETAG~s~~~~~di~I~Gi~ 163 (260)
-||.+++.++| +.+|.+ .+||+.|..|..+. +-.+|-|.+ .|..-++. ....+.+|.
T Consensus 158 ~L~pl~~~llf-~~KP~~-----------~i~~~eI~~V~f~Rv~~~~~~~rtFD~---~v~~k~~~----~~~~fs~I~ 218 (238)
T d2gcla1 158 YLYPLDNAFFF-LTKPTL-----------YIPFSDVSMVNISRAGQTSTSSRTFDL---EVVLRSNR----GSTTFANIS 218 (238)
T ss_dssp EEEECSSEEEE-ESSSCE-----------EEEGGGEEEEEEEC--------CEEEE---EEEESTTC----CEEEEEEEE
T ss_pred EEEEccCeEEE-ecCCcE-----------EEEehhEeEEEEEeecCCccccceeeE---EEEEeCCC----ccEEEeccC
Confidence 57788888888 777777 79999999999986 245677764 44444422 346666664
No 3
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.04 E-value=28 Score=25.73 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=32.3
Q ss_pred hccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhh
Q 024940 82 KDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYL 133 (260)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~L 133 (260)
..+++=.+|+|.|-++|-=+.+ ...--.+||..|.++.++|+.+
T Consensus 31 ~~~~~G~l~LTthRli~~~~~~--------~~~s~~lpl~~i~~~e~~~~~f 74 (129)
T d2hthb1 31 IKFDAGTLLLSTHRLIWRDQKN--------HECCMAILLSQIVFIEEQAAGI 74 (129)
T ss_dssp SCCCCEEEEEESSEEEEEETTC--------CSCCEEEEGGGEEEEEEECCTT
T ss_pred ccccceEEEEEeceEEEecCCC--------CceEEEEEhHHceeeeEEcccc
Confidence 3456669999999999942211 1123479999999999999863
No 4
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}
Probab=21.99 E-value=1.4e+02 Score=21.92 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEe-ehhhhhhhcc-eeEEEEeccCCCCCCCCeeeecCCCh
Q 024940 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE-QGYLQSLFGV-YSLRIENVGVRRPPSDDVQIQGVANP 165 (260)
Q Consensus 88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~-QG~Lqr~FGl-~slrIETAG~s~~~~~di~I~Gi~~p 165 (260)
.+.+|.+-++..=..|+. |-=+.-..+||.+|+++++| -|-+ .+ +.+++.+.|...+ -+..+.+-.|.
T Consensus 35 ~~~FTnkRlI~vD~qg~t----GkK~~~~siPY~~I~~~siEtAGtf----D~DsElki~~~~~~~~--i~~ef~~~~di 104 (116)
T d3dcxa1 35 MFVFTNKRLILIDKQGVT----GKKVSYHSVPYKAITHFEVETAGTF----DMDAELKLWISGQKDP--LVKELKKGTDV 104 (116)
T ss_dssp EEEEESSEEEEEEEESSS----CCEEEEEEEEGGGEEEEEEECCSST----TSCEEEEEEETTCSSC--EEEEECBTSCH
T ss_pred eEEEecceEEEEeccccc----cceEEEEEEehhHeEEEEEEeCccc----cCcccEEEEEecCceE--EEEEeCCccCH
Confidence 444555544443235555 32222346999999999999 4443 33 4578877665533 35688999999
Q ss_pred hhHHHHHHHH
Q 024940 166 SDFRKAVLTR 175 (260)
Q Consensus 166 ~~fRk~Il~~ 175 (260)
.++-++|...
T Consensus 105 ~~i~~~La~~ 114 (116)
T d3dcxa1 105 VGIQKTIANF 114 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998888764
No 5
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=17.97 E-value=33 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.2
Q ss_pred CCeeeecCCChhhHHHHHHHHHhhcch
Q 024940 155 DDVQIQGVANPSDFRKAVLTRLSNMTN 181 (260)
Q Consensus 155 ~di~I~Gi~~p~~fRk~Il~~~~~~~~ 181 (260)
+.||+.++.||+..|+.|+.+++++..
T Consensus 4 GQIql~~v~d~~~a~~~i~~~k~~l~~ 30 (110)
T d1r31a1 4 AQVQIVGIQDPLNARLSLLRRKDEIIE 30 (110)
T ss_dssp EEEEEESCSCHHHHHHHHHHTHHHHHH
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999874
No 6
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.64 E-value=2e+02 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=25.6
Q ss_pred eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeeh
Q 024940 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQG 131 (260)
Q Consensus 88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG 131 (260)
.|++|.+-++++-. .-- -..+..|||..|..|.-..|
T Consensus 31 ~L~lTnyrliF~~~-~~~------~~~~~~ipl~~I~~v~k~~~ 67 (125)
T d1zsqa1 31 TLTVTNYRLYFKSM-ERD------PPFVLDASLGVINRVEKIGG 67 (125)
T ss_dssp EEEEESSEEEEEES-SSS------SCEEEEEEGGGEEEEEEECC
T ss_pred EEEEEeeEEEEEcC-CCC------ccEEEEeccceeeeeeeccc
Confidence 68999999999732 111 12356899999999875543
No 7
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.32 E-value=1.7e+02 Score=19.25 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=41.3
Q ss_pred hccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhh--hhcceeEEEEecc
Q 024940 82 KDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQS--LFGVYSLRIENVG 148 (260)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr--~FGl~slrIETAG 148 (260)
+..+.|=+.++.+.+.|=.+..-- +.-..|||..+..|...+..... -=+-|.+.|.|..
T Consensus 15 ~~wkkRwFvL~~~~L~YYk~~~~~-------~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~ 76 (112)
T d2coaa1 15 TLRKRHYWRLDCKCITLFQNNTTN-------RYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN 76 (112)
T ss_dssp CCCEEEEEEECSSEEEEESSSSCS-------SCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS
T ss_pred CCeeEEEEEEEcceEEEEeccCCC-------ccceEEeeeccccccccccccccccCCCccEEEEEeCC
Confidence 446777889999999886443332 45578999999998876553321 2245788998876
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.82 E-value=89 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024940 58 LLILAWGIGLFMLLYLPV 75 (260)
Q Consensus 58 llilawgvGilmLL~lPi 75 (260)
|+|.+.+||||+-+.+|-
T Consensus 6 LlVViaIIgILaaia~P~ 23 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPA 23 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346666777777777775
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.65 E-value=60 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=17.2
Q ss_pred ccceeeecccchhhhhhhhhhHHHHHHH
Q 024940 28 DDDVLYTASFQEKEDNFVQYQTAQWVLY 55 (260)
Q Consensus 28 ~~~ily~AsF~e~~~~~vKY~tviwl~~ 55 (260)
|-+-||.+||.+.-...- ..+--|-.+
T Consensus 52 EKkalYrisF~~t~ae~~-~p~gewK~v 78 (144)
T d1v54d_ 52 EKVELYRLKFKESFAEMN-RSTNEWKTV 78 (144)
T ss_dssp HHHHHHHHHCSSCHHHHT-CCCSHHHHH
T ss_pred HHHHHHHHHhcccccccc-CCCCchhHH
Confidence 667899999988665542 234444433
No 10
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.53 E-value=72 Score=21.72 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=24.5
Q ss_pred ceeEeecc--ceEeeecCCccccccccceeeEEEeCCCeeeEEEe
Q 024940 87 RKLFLTPN--AIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE 129 (260)
Q Consensus 87 Rkl~vt~~--~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~ 129 (260)
|-++++++ .|.|+-.++.. .+..+++|++.|.+|..-
T Consensus 29 R~f~L~~d~~~i~~~~~~~~~------~~~~~~i~i~~I~~V~~G 67 (119)
T d1maia_ 29 RFYKLQEDCKTIWQESRKVMR------SPESQLFSIEDIQEVRMG 67 (119)
T ss_dssp EEEEECTTSSEEEECCCCTTC------CTTTTEEEGGGEEEEEES
T ss_pred EEEEEcCCCCEEEEeCCCCCC------CccceEEEHHHceEEEcC
Confidence 55778765 46665334444 345678999999997663
Done!