BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024941
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HPC|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The
Two Forms Of The H-Protein, A Lipoamide-Containing
Protein Of The Glycine Decarboxylase
pdb|1HPC|B Chain B, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The
Two Forms Of The H-Protein, A Lipoamide-Containing
Protein Of The Glycine Decarboxylase
pdb|1DXM|A Chain A, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex
pdb|1DXM|B Chain B, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex
pdb|1HTP|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The
Two Forms Of The H-Protein, A Lipoamide-Containing
Protein Of The Glycine Decarboxylase Complex
Length = 131
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 184 PKPGKSKF---GFGSPRSSTINRAVSEPTKSNLAQVNMRVTSEPG----SP-EDGY-IPD 234
P+PG S GFG+ S V+ P + +VN +T +PG SP EDG+ I
Sbjct: 44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKI 103
Query: 235 SPTTP 239
PT+P
Sbjct: 104 KPTSP 108
>pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
Length = 356
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 157 NQKRNGEKQHAPSAPPLPENGFNSPRTPKPGKSKFGFGSPRSSTINRAV 205
++R+ E++ P + NG+ R P+ GK +FG G R I A+
Sbjct: 2 GRRRSHERRDLPPNLYIRNNGYYCYRDPRTGK-EFGLGRDRRIAITEAI 49
>pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
Length = 356
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 157 NQKRNGEKQHAPSAPPLPENGFNSPRTPKPGKSKFGFGSPRSSTINRAV 205
++R+ E++ P + NG+ R P+ GK +FG G R I A+
Sbjct: 2 GRRRSHERRDLPPNLYIRNNGYYCYRDPRTGK-EFGLGRDRRIAITEAI 49
>pdb|1KJK|A Chain A, Solution Structure Of The Lambda Integrase Amino-Terminal
Domain
pdb|2WCC|3 Chain 3, Phage Lambda Intdbd1-64 Complex With P Prime 2 Dna
Length = 64
Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 158 QKRNGEKQHAPSAPPLPENGFNSPRTPKPGKSKFGFGSPRSSTINRAV 205
++R+ E++ P + NG+ R P+ GK +FG G R I A+
Sbjct: 3 RRRSHERRDLPPNLYIRNNGYYCYRDPRTGK-EFGLGRDRRIAITEAI 49
>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
Length = 354
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 190 KFGFGSPRSSTINRAVSEPTKSNLAQVNMRVTSEPGSPEDGYIPDSPTTPGTP 242
K F S +ST N S P S L +N + TS P DG + D G+P
Sbjct: 112 KLPFISVPTSTSNDGFSSPVASLL--INGKRTSVPAKTPDGIVVDIDVIKGSP 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,935,922
Number of Sequences: 62578
Number of extensions: 314074
Number of successful extensions: 618
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 18
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)