Query 024941
Match_columns 260
No_of_seqs 202 out of 692
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726 HVA22/DP1 gene product 100.0 4.3E-38 9.2E-43 281.1 17.5 150 7-156 2-151 (225)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 5.4E-29 1.2E-33 194.1 11.0 94 3-98 1-94 (94)
3 KOG1725 Protein involved in me 100.0 2.5E-29 5.5E-34 219.4 9.2 108 1-110 52-159 (186)
4 COG5052 YOP1 Protein involved 99.8 3.1E-20 6.7E-25 161.0 11.0 104 3-109 56-160 (186)
5 KOG1726 HVA22/DP1 gene product 66.6 74 0.0016 29.3 10.3 73 37-109 99-171 (225)
6 PF09726 Macoilin: Transmembra 51.2 25 0.00054 37.2 5.1 7 134-140 192-198 (697)
7 PRK06553 lipid A biosynthesis 46.6 1.7E+02 0.0037 27.1 9.4 67 37-111 19-86 (308)
8 PF10066 DUF2304: Uncharacteri 44.9 1.6E+02 0.0035 23.6 8.3 67 9-76 6-72 (115)
9 PRK13700 conjugal transfer pro 39.5 2.1E+02 0.0046 30.7 9.7 23 35-57 23-45 (732)
10 COG2270 Permeases of the major 36.9 1.4E+02 0.0031 30.1 7.6 78 11-101 68-147 (438)
11 PF11137 DUF2909: Protein of u 36.9 1.7E+02 0.0038 21.7 7.0 56 10-65 6-61 (63)
12 PF01277 Oleosin: Oleosin; In 36.2 1.4E+02 0.003 24.9 6.3 28 106-133 90-117 (118)
13 PF10754 DUF2569: Protein of u 35.2 2.5E+02 0.0054 23.5 7.9 83 8-94 59-148 (149)
14 PF08990 Docking: Erythronolid 30.3 37 0.0008 21.2 1.5 10 245-254 17-26 (27)
15 KOG1792 Reticulon [Intracellul 30.0 4.4E+02 0.0095 24.2 12.6 82 35-121 123-212 (230)
16 CHL00186 psaI photosystem I su 27.7 42 0.0009 22.5 1.5 22 1-22 1-22 (36)
17 KOG4797 Transcriptional regula 27.0 1.9E+02 0.0042 24.1 5.5 39 104-142 45-83 (123)
18 KOG4654 Uncharacterized conser 25.5 5.1E+02 0.011 23.8 8.4 62 11-79 46-107 (252)
19 PRK10781 rcsF outer membrane l 24.7 1.8E+02 0.004 24.6 5.2 17 240-256 79-95 (133)
20 KOG1924 RhoA GTPase effector D 23.3 1.1E+03 0.023 26.4 18.8 29 102-130 457-490 (1102)
21 COG2832 Uncharacterized protei 22.7 1.1E+02 0.0023 25.7 3.4 59 44-102 6-64 (119)
22 KOG2675 Adenylate cyclase-asso 22.7 1.7E+02 0.0036 29.8 5.3 20 64-83 131-155 (480)
23 COG1560 HtrB Lauroyl/myristoyl 22.4 4.7E+02 0.01 24.9 8.1 94 38-140 14-120 (308)
24 KOG4304 Transcriptional repres 21.6 2.5E+02 0.0054 26.0 6.0 39 82-120 23-62 (250)
25 PF10112 Halogen_Hydrol: 5-bro 21.5 5.3E+02 0.012 22.3 10.7 24 37-60 4-27 (199)
No 1
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=100.00 E-value=4.3e-38 Score=281.08 Aligned_cols=150 Identities=43% Similarity=0.796 Sum_probs=142.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcCCccch
Q 024941 7 TRCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGT 86 (260)
Q Consensus 7 ~~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~lP~t~GA 86 (260)
.+++++++|++||||+|||+++++++|++++++||+||||||+++++|.++|++++|+|||+++|++|++||++|.|+|+
T Consensus 2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~ 81 (225)
T KOG1726|consen 2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGA 81 (225)
T ss_pred eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcccCCCCCCccch
Q 024941 87 GFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFLAGQSARFSNAPAHE 156 (260)
Q Consensus 87 ~~IY~~fI~P~l~~~E~~ID~~L~~lr~ra~d~~~~~~q~~~~~Gq~~f~e~L~~~~~q~~~~s~~~~~~ 156 (260)
.+||++|++|++++||++||+.+.+.|+++.|.++.+++++..++|....+.+.+.+.|.......+...
T Consensus 82 ~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~ 151 (225)
T KOG1726|consen 82 SYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSD 151 (225)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999998887665444444
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.96 E-value=5.4e-29 Score=194.11 Aligned_cols=94 Identities=37% Similarity=0.848 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcCC
Q 024941 3 GDFITRCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPK 82 (260)
Q Consensus 3 ~~fl~~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~lP~ 82 (260)
.+++++++++++|++||+|+|+|+++++++ ++.++||+||+++|+++++|.+++.+++|+|+|+++|++|++||++|+
T Consensus 1 ~~~~~~~l~~~i~~~yP~~~s~kal~~~~~--~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~ 78 (94)
T PF03134_consen 1 FGFIARLLCNLIGILYPAYKSFKALKSKDK--KDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQ 78 (94)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCC
Confidence 368899999999999999999999999854 467999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcchhc
Q 024941 83 TQGTGFVYQSVLRPYV 98 (260)
Q Consensus 83 t~GA~~IY~~fI~P~l 98 (260)
++||++||+++++|++
T Consensus 79 ~~Ga~~iy~~~i~P~~ 94 (94)
T PF03134_consen 79 FQGAEYIYDKFIRPFL 94 (94)
T ss_pred CCcHHHHHHHHccccC
Confidence 9999999999999985
No 3
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-29 Score=219.41 Aligned_cols=108 Identities=32% Similarity=0.619 Sum_probs=100.8
Q ss_pred ChhhHHHHHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc
Q 024941 1 MLGDFITRCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWS 80 (260)
Q Consensus 1 M~~~fl~~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~l 80 (260)
|+.+-++.++|+++|++||+|+|++|+|+.+++|+ ++||+|||+||+++++|.+...+++|+|+||++|++|++||++
T Consensus 52 l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD--~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~l 129 (186)
T KOG1725|consen 52 LLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDD--TQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVL 129 (186)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 34556778999999999999999999998877766 8999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhhhcchhcccchhhHHHHHH
Q 024941 81 PKTQGTGFVYQSVLRPYVSKHETDIDRRIL 110 (260)
Q Consensus 81 P~t~GA~~IY~~fI~P~l~~~E~~ID~~L~ 110 (260)
|+++||.+||+++++|++.+|..+||+..+
T Consensus 130 P~~~Ga~~iY~~~vrp~~~~~~~~~~~~~~ 159 (186)
T KOG1725|consen 130 PQFNGAAIIYNHIVRPFFLKHSREIDDIED 159 (186)
T ss_pred cCCCCceeeechhhhhhhhhhhhhhhhhhh
Confidence 999999999999999999999999988764
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.83 E-value=3.1e-20 Score=160.96 Aligned_cols=104 Identities=28% Similarity=0.485 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcCC
Q 024941 3 GDFITRCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPK 82 (260)
Q Consensus 3 ~~fl~~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~lP~ 82 (260)
+||+- ++.+++|+..|++.+.++++..+..|+ ++||+||+|+++.+++|.+...+++|+||||..|.+|++|+..|+
T Consensus 56 lG~g~-ilt~~~~~~lP~~~~l~a~~~~n~~dd--~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~pr 132 (186)
T COG5052 56 LGFGL-ILTNVAGFSLPAQLSLVAFYTLNFMDD--TQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPR 132 (186)
T ss_pred hhHHH-HHHHHHHHHccHHHHHHHHHcCCchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 34443 788999999999999999999877666 899999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcchhcccchhh-HHHHH
Q 024941 83 TQGTGFVYQSVLRPYVSKHETD-IDRRI 109 (260)
Q Consensus 83 t~GA~~IY~~fI~P~l~~~E~~-ID~~L 109 (260)
|+||..||+++++|++++|.-. ||+.+
T Consensus 133 t~GA~~IY~~~i~p~~s~~~~~~IektV 160 (186)
T COG5052 133 TEGARIIYDDIIAPDVSDHGFRTIEKTV 160 (186)
T ss_pred cCceeeeHHhhccccccHHHHHHHHHHH
Confidence 9999999999999999998765 56554
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=66.61 E-value=74 Score=29.29 Aligned_cols=73 Identities=10% Similarity=-0.108 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcCCccchhhhhhhhcchhcccchhhHHHHH
Q 024941 37 LRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRI 109 (260)
Q Consensus 37 l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~lP~t~GA~~IY~~fI~P~l~~~E~~ID~~L 109 (260)
-..-+.+|....++..++.++..++.|-+.|-.-+..+..|...|..+++...++....|....+...+-+.+
T Consensus 99 eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
T KOG1726|consen 99 EIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVL 171 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccc
Confidence 3566889999999999999999999999999999999999999999999999999998888876665544433
No 6
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.21 E-value=25 Score=37.16 Aligned_cols=7 Identities=0% Similarity=0.543 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 024941 134 KFFDIIK 140 (260)
Q Consensus 134 ~f~e~L~ 140 (260)
..+++|+
T Consensus 192 ~~~~~l~ 198 (697)
T PF09726_consen 192 FYMQLLQ 198 (697)
T ss_pred HHHHHHH
Confidence 3344443
No 7
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=46.62 E-value=1.7e+02 Score=27.14 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHhhcCCccchhhhhhhhcchhcccchhhHHHHHHH
Q 024941 37 LRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAF-FIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILE 111 (260)
Q Consensus 37 l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~f-llWL~lP~t~GA~~IY~~fI~P~l~~~E~~ID~~L~~ 111 (260)
+..++.||++.+++ .+++++|......++. +.|++.+.......+-.++-.=|=.+-+.++++...+
T Consensus 19 ~~~~~~~~l~~~l~--------~~~~~LP~~~~~~~~~~l~~~~~~~~~rr~v~~~NL~~afPe~s~~e~~~i~~~ 86 (308)
T PRK06553 19 FAGWLVAQLVFGLL--------GLLRLFPADKAINFFGRLARLIGPLLPRHRVALDNLRAAFPEKSEAEIEAIALG 86 (308)
T ss_pred HHHHHHHHHHHHHH--------HHHHHCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45556666654433 4567888877766553 3344443212223344443222223344555554443
No 8
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=44.88 E-value=1.6e+02 Score=23.57 Aligned_cols=67 Identities=15% Similarity=0.421 Sum_probs=42.3
Q ss_pred HHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 024941 9 CLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFI 76 (260)
Q Consensus 9 ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fll 76 (260)
.+..+++.+. .+-.++.+++++-+.+..-.|+..|++..++.++=.+.+.+-.++=+++-.-++|++
T Consensus 6 ii~i~~~v~~-~~~ii~~vr~~~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf~~ 72 (115)
T PF10066_consen 6 IILIIIAVLF-LLFIIRLVRKRKLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLFYL 72 (115)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHHHH
Confidence 3333444433 445666777765555666788888888888888877777766666555544444443
No 9
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=39.47 E-value=2.1e+02 Score=30.71 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024941 35 DQLRFWCKYWILVAMLTVLERFL 57 (260)
Q Consensus 35 ~~l~~WL~YWIV~al~t~~E~~~ 57 (260)
.|+..|+.||+++.++.+.-.++
T Consensus 23 ~qi~~~~~~~~~~~~~~~~~~~~ 45 (732)
T PRK13700 23 SQIANIILYCLFIFFWILVGLVL 45 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999886665553333
No 10
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=36.95 E-value=1.4e+02 Score=30.07 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHhhcCCccchhh
Q 024941 11 ILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPM--YGELKLAFFIYLWSPKTQGTGF 88 (260)
Q Consensus 11 ~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPf--Y~~~Kl~fllWL~lP~t~GA~~ 88 (260)
.+++..+-|..-+.-=....+ ++|+..|++.+....+ .+.|+|- |+..+++|++-.-. -+.+|..
T Consensus 68 ~llia~LapiLG~iaD~~g~R------k~~~~~f~~i~i~~~~------~L~~i~~~s~~~~~l~~~il~~i-~~~~s~V 134 (438)
T COG2270 68 GLLIALLAPILGTIADYPGPR------KKFFGFFTAIGIISTF------LLWFIPPGSYLLLLLLFLILASI-GFEFSNV 134 (438)
T ss_pred HHHHHHHHHHhhhhhccCCCc------chHHHHHHHHHHHHHH------HHHHhCCCchHHHHHHHHHHHHH-hcchhhe
Confidence 345555566555443333222 6788888877776554 5667776 77777776654443 4799999
Q ss_pred hhhhhcchhcccc
Q 024941 89 VYQSVLRPYVSKH 101 (260)
Q Consensus 89 IY~~fI~P~l~~~ 101 (260)
.|+.++.-+..+.
T Consensus 135 fyds~L~~~~~k~ 147 (438)
T COG2270 135 FYDSMLPRLTTKD 147 (438)
T ss_pred ehhhHhhhhcCcc
Confidence 9999987666553
No 11
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=36.91 E-value=1.7e+02 Score=21.67 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024941 10 LILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFP 65 (260)
Q Consensus 10 l~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlP 65 (260)
+..++.+++-.....-.+-+.+.+...+.+.|++=|.+++..++=.+.....+|+|
T Consensus 6 v~lll~ii~sL~saL~~l~kd~~~~~rm~~~L~~RV~lS~~l~~lil~~~~~G~ip 61 (63)
T PF11137_consen 6 VLLLLAIIASLFSALFFLVKDKGSSKRMVKALGRRVGLSALLFLLILIALYTGWIP 61 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566666666666666655544556678999999999998887666666667763
No 12
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=36.24 E-value=1.4e+02 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024941 106 DRRILELRARLWDLAIYYWQNCAQLSQE 133 (260)
Q Consensus 106 D~~L~~lr~ra~d~~~~~~q~~~~~Gq~ 133 (260)
-+.++..|.|..|...+..++..++||+
T Consensus 90 ~~q~d~Ak~ri~d~a~~v~~kake~gq~ 117 (118)
T PF01277_consen 90 PDQLDYAKRRIADTASYVGQKAKEVGQK 117 (118)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4456788899999999999999999985
No 13
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=35.18 E-value=2.5e+02 Score=23.50 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-HHHHHHHHH-H-----hhhhhhHHHHHHHHHHHhhc
Q 024941 8 RCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAML-TVLERFLDA-I-----ASWFPMYGELKLAFFIYLWS 80 (260)
Q Consensus 8 ~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~-t~~E~~~d~-~-----l~wlPfY~~~Kl~fllWL~l 80 (260)
.++++++..+|-.+..+...++++. .-++..=|.+.+++ ..++.+.-. + ..-..+=..++.++.+-+|.
T Consensus 59 ~~~~~~~~~~~~l~~~~lffkr~~~----~P~~~I~~ll~~v~~~~l~~~~~~~~~~~~~~d~~~i~~l~~~li~a~Iwi 134 (149)
T PF10754_consen 59 EVAINIAMWLFTLWLLYLFFKRKRR----FPKLYIIWLLISVLFIALDAFAFSYIFPSPVIDAEAIRELLRSLIAAAIWI 134 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555432 12222233333333 444443320 1 11112334455556666666
Q ss_pred CCccchhhhhhhhc
Q 024941 81 PKTQGTGFVYQSVL 94 (260)
Q Consensus 81 P~t~GA~~IY~~fI 94 (260)
|++.-|..|=++|+
T Consensus 135 pYf~~S~RVK~TFv 148 (149)
T PF10754_consen 135 PYFLRSKRVKNTFV 148 (149)
T ss_pred HHHHHhHHhhhhcc
Confidence 66655555555444
No 14
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=30.31 E-value=37 Score=21.25 Aligned_cols=10 Identities=60% Similarity=0.850 Sum_probs=7.9
Q ss_pred hHHHHHHHHH
Q 024941 245 SLLQARQRLR 254 (260)
Q Consensus 245 ~~~~~~~~~~ 254 (260)
.|+++|.|||
T Consensus 17 eL~~~r~RLr 26 (27)
T PF08990_consen 17 ELRRARRRLR 26 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4788888887
No 15
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.00 E-value=4.4e+02 Score=24.19 Aligned_cols=82 Identities=18% Similarity=0.054 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcC---Cccchhhhhhhhcc----h-hcccchhhHH
Q 024941 35 DQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSP---KTQGTGFVYQSVLR----P-YVSKHETDID 106 (260)
Q Consensus 35 ~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~lP---~t~GA~~IY~~fI~----P-~l~~~E~~ID 106 (260)
.++..++.-|+--++-.+.+..+.. .|. ..+|.+..+|...= .++|..++|--++- | .+.+||+.||
T Consensus 123 ~~~a~~~~~~in~~l~~l~~ia~~~--d~~---~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID 197 (230)
T KOG1792|consen 123 LALASSLRVEINQALSELRDIALGR--DLK---DFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQID 197 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--cHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHh
Confidence 4566777778877777766654321 122 34666777776543 36888888876554 4 3478999999
Q ss_pred HHHHHHHHHHHHHHH
Q 024941 107 RRILELRARLWDLAI 121 (260)
Q Consensus 107 ~~L~~lr~ra~d~~~ 121 (260)
..++.++.+......
T Consensus 198 ~~~~~~~~~~k~~~~ 212 (230)
T KOG1792|consen 198 PYLGKVMEELKKHYR 212 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988876665443
No 16
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=27.70 E-value=42 Score=22.52 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.8
Q ss_pred ChhhHHHHHHHHHHHhHhhHHH
Q 024941 1 MLGDFITRCLILVFGYAYPAFE 22 (260)
Q Consensus 1 M~~~fl~~ll~~~iG~lYPaY~ 22 (260)
|..+++-.+++-++|++.||..
T Consensus 1 m~as~LPsI~VPlVGlvfPai~ 22 (36)
T CHL00186 1 MTASNLPSILVPLVGLVFPAIA 22 (36)
T ss_pred CccccCchhHHhHHHHHHHHHH
Confidence 6677888889999999999974
No 17
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=26.99 E-value=1.9e+02 Score=24.06 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024941 104 DIDRRILELRARLWDLAIYYWQNCAQLSQEKFFDIIKFL 142 (260)
Q Consensus 104 ~ID~~L~~lr~ra~d~~~~~~q~~~~~Gq~~f~e~L~~~ 142 (260)
.||.+|.+..+-++..++...+.-.+-..+.+.++....
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~ 83 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERN 83 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999888777777666666655555555555554433
No 18
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=5.1e+02 Score=23.76 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=38.4
Q ss_pred HHHHHhHhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 024941 11 ILVFGYAYPAFECYKIVEKNRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLW 79 (260)
Q Consensus 11 ~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~ 79 (260)
...+.++|-+..+.|-..-+ -+ -+|+.-|-+ +|.+++.+....+..+|--..++++.++-=+
T Consensus 46 ~~c~q~Vhk~lc~~kkc~iR---l~--Y~W~ELW~a--L~n~L~Flmsne~~llak~dif~La~lIldl 107 (252)
T KOG4654|consen 46 FLCFQFVHKALCSLKKCGIR---LE--YHWLELWRA--LFNFLDFLMSNEINLLAKEDIFRLAELILDL 107 (252)
T ss_pred HHHHHHHHHHHHHHHhhcce---ee--eHHHHHHHH--HHHHHHHHHHhHhhhcchhhHHHHHHHHHHH
Confidence 34455555555554433322 11 489999975 5677777766667777877777777665433
No 19
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=24.72 E-value=1.8e+02 Score=24.65 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=11.7
Q ss_pred CCcchhHHHHHHHHHhh
Q 024941 240 GTPNESLLQARQRLRRQ 256 (260)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ 256 (260)
-++.-++..||.++||.
T Consensus 79 ~~~p~s~~~Ar~~~r~k 95 (133)
T PRK10781 79 QDSPPSIPTARKRMQIN 95 (133)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 34445677888888874
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.30 E-value=1.1e+03 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Q 024941 102 ETDIDRRILELR-----ARLWDLAIYYWQNCAQL 130 (260)
Q Consensus 102 E~~ID~~L~~lr-----~ra~d~~~~~~q~~~~~ 130 (260)
..-||..+++.+ .++.++-..+|+....+
T Consensus 457 ~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~ 490 (1102)
T KOG1924|consen 457 TELIDKMVDKAKAEESEQKAAELEKKFDKELTAR 490 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345677666544 34555555555544433
No 21
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.70 E-value=1.1e+02 Score=25.67 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcCCccchhhhhhhhcchhcccch
Q 024941 44 WILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHE 102 (260)
Q Consensus 44 WIV~al~t~~E~~~d~~l~wlPfY~~~Kl~fllWL~lP~t~GA~~IY~~fI~P~l~~~E 102 (260)
|++.|++++.--+.+.|+..+|-=..+=+++.++.=....--+=.++++++.|++.+++
T Consensus 6 ~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg~~v~~~~ 64 (119)
T COG2832 6 YIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFGPYVRDWR 64 (119)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhhHHHHHHH
Confidence 67888888887788888888876555555544443322222233344445555555443
No 22
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=22.66 E-value=1.7e+02 Score=29.77 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=10.5
Q ss_pred hhhHHHHHHH-----HHHHhhcCCc
Q 024941 64 FPMYGELKLA-----FFIYLWSPKT 83 (260)
Q Consensus 64 lPfY~~~Kl~-----fllWL~lP~t 83 (260)
-|||..++.+ .+.|...+.+
T Consensus 131 S~~FNhLsav~e~i~algWVav~~t 155 (480)
T KOG2675|consen 131 SPFFNHLSAVSESIPALGWVAVKPT 155 (480)
T ss_pred chHHHHHHHHHhhcccceeEecCCC
Confidence 4555555543 3556655544
No 23
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.37 E-value=4.7e+02 Score=24.87 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhcC-CccchhhhhhhhcchhcccchhhHHHHHHHHHHH
Q 024941 38 RFWCKYWILVAMLTVLERFLDAIASWFPMYGELKL-AFFIYLWSP-KTQGTGFVYQSVLRPYVSKHETDIDRRILELRAR 115 (260)
Q Consensus 38 ~~WL~YWIV~al~t~~E~~~d~~l~wlPfY~~~Kl-~fllWL~lP-~t~GA~~IY~~fI~P~l~~~E~~ID~~L~~lr~r 115 (260)
+.|+.+|.+..++.++ .+|.=..-++ -.+.||+.+ ..+.....-.++=.=|=.+.|.++++.+.+.-..
T Consensus 14 ~~~~~~l~~~~l~l~~---------~lP~~~~~~l~~~lg~l~~~~~~~~~~~a~~NL~~~FPe~se~ere~i~~~~~~~ 84 (308)
T COG1560 14 RYWLTWLGVGALWLLV---------LLPYPFLRRLGDGLGRLAGRLLKRRRKIARRNLALCFPEKSEAEREKIVKESFAS 84 (308)
T ss_pred HHHHHHHHHHHHHHHH---------HCCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4566555555544333 4454333333 245677776 3344444444442222256677777777766555
Q ss_pred HHHHHHHHHH-----------HHHHhhHHHHHHHHH
Q 024941 116 LWDLAIYYWQ-----------NCAQLSQEKFFDIIK 140 (260)
Q Consensus 116 a~d~~~~~~q-----------~~~~~Gq~~f~e~L~ 140 (260)
....+.++.. .+...|.+.+.++++
T Consensus 85 ~~r~~~E~~~~~~~~~~~~~~~~~v~g~e~l~e~l~ 120 (308)
T COG1560 85 MGRALLETGMAWFRPPERILRRVEVEGLEHLEEALA 120 (308)
T ss_pred HHHHHHHHHHHHhCChhhhcceeeecCHHHHHHHHH
Confidence 4444443331 244457777777764
No 24
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=21.61 E-value=2.5e+02 Score=26.04 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=31.3
Q ss_pred Cccchhhhhhhhcchhcccch-hhHHHHHHHHHHHHHHHH
Q 024941 82 KTQGTGFVYQSVLRPYVSKHE-TDIDRRILELRARLWDLA 120 (260)
Q Consensus 82 ~t~GA~~IY~~fI~P~l~~~E-~~ID~~L~~lr~ra~d~~ 120 (260)
...+..+.|++.-+|++.+.. ..|++.|++||+-.-++.
T Consensus 23 ~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~ 62 (250)
T KOG4304|consen 23 ERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEAL 62 (250)
T ss_pred CcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999998865 579999999986554443
No 25
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.47 E-value=5.3e+02 Score=22.25 Aligned_cols=24 Identities=13% Similarity=0.312 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024941 37 LRFWCKYWILVAMLTVLERFLDAI 60 (260)
Q Consensus 37 l~~WL~YWIV~al~t~~E~~~d~~ 60 (260)
..+++.+|++-..+.++-.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLVSFF 27 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777666555554444333
Done!