Query 024941
Match_columns 260
No_of_seqs 202 out of 692
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 26.2 1.2E+02 0.0043 26.7 6.3 14 73-86 456-469 (491)
2 4hkr_A Calcium release-activat 18.5 1.6E+02 0.0053 25.8 5.0 42 60-106 133-185 (214)
3 1wgn_A UBAP1, ubiquitin associ 17.2 1.8E+02 0.0061 20.8 4.2 34 8-41 21-54 (63)
4 1iie_A Protein (HLA-DR antigen 14.5 92 0.0032 23.0 2.2 28 22-49 31-60 (75)
5 2kwt_A Protease NS2-3; NS2 dom 11.2 93 0.0032 19.6 1.2 9 38-46 8-16 (33)
6 4aw6_A CAAX prenyl protease 1 11.2 7.5E+02 0.026 23.6 8.2 20 85-104 210-229 (482)
7 2fyu_K Ubiquinol-cytochrome C 10.1 1.2E+02 0.0041 21.0 1.6 25 42-67 22-48 (56)
8 1vpu_A VPU protein, VPU(39-81) 10.0 82 0.0028 21.1 0.7 18 104-121 2-19 (45)
9 4ae4_A Ubiquitin-associated pr 9.9 2.3E+02 0.0078 22.1 3.4 36 7-42 9-44 (118)
10 2ou1_A Apolipoprotein A-II; hi 9.2 3E+02 0.01 20.2 3.5 21 118-138 9-29 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=26.19 E-value=1.2e+02 Score=26.71 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=11.1
Q ss_pred HHHHHhhcCCccch
Q 024941 73 AFFIYLWSPKTQGT 86 (260)
Q Consensus 73 ~fllWL~lP~t~GA 86 (260)
++++|+++|.|+|=
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 45678899999983
No 2
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=18.48 E-value=1.6e+02 Score=25.81 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=23.2
Q ss_pred HhhhhhhHHHHHH-----------HHHHHhhcCCccchhhhhhhhcchhcccchhhHH
Q 024941 60 IASWFPMYGELKL-----------AFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDID 106 (260)
Q Consensus 60 ~l~wlPfY~~~Kl-----------~fllWL~lP~t~GA~~IY~~fI~P~l~~~E~~ID 106 (260)
+++|+-||..-+. +++++++ -|-..|++++.--...+...|+
T Consensus 133 ll~WVKF~~~~~~aa~~~t~vliPv~i~F~~-----Fa~hFYrsL~~hk~e~~~~~i~ 185 (214)
T 4hkr_A 133 ILCWVKFYDLSRRAAWSATVVLIPVMIIFMA-----FAIHFYRSLVSHKYEVTVSGIR 185 (214)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTHHHHHHHHH-----HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhheEEeecCCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888876221 2222332 3556777776655555555543
No 3
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=17.17 E-value=1.8e+02 Score=20.80 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHH
Q 024941 8 RCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWC 41 (260)
Q Consensus 8 ~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL 41 (260)
..+-++++..|.--...|||+..+.+.++...||
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888999999999999998777777666665
No 4
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=14.46 E-value=92 Score=23.00 Aligned_cols=28 Identities=18% Similarity=0.532 Sum_probs=17.2
Q ss_pred HHHHHHhcCc--ccHHHHHHHHHHHHHHHH
Q 024941 22 ECYKIVEKNR--VEIDQLRFWCKYWILVAM 49 (260)
Q Consensus 22 ~S~KALe~~~--~d~~~l~~WL~YWIV~al 49 (260)
+-++.|++.= .|=.....|+.||.+|-+
T Consensus 31 ~NLk~LK~~m~~~dWk~FEsWM~~WLLFeM 60 (75)
T 1iie_A 31 ENLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Confidence 3455565431 122346899999999854
No 5
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=11.24 E-value=93 Score=19.59 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q 024941 38 RFWCKYWIL 46 (260)
Q Consensus 38 ~~WL~YWIV 46 (260)
.-|++|+|.
T Consensus 8 lWWlqYfi~ 16 (33)
T 2kwt_A 8 IWWLQYFIT 16 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 468888875
No 6
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=11.20 E-value=7.5e+02 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=15.3
Q ss_pred chhhhhhhhcchhcccchhh
Q 024941 85 GTGFVYQSVLRPYVSKHETD 104 (260)
Q Consensus 85 GA~~IY~~fI~P~l~~~E~~ 104 (260)
...++|-.+|.|++.+.++-
T Consensus 210 ~~~~iyP~~I~PLfnk~~Pl 229 (482)
T 4aw6_A 210 VLVTIYADYIAPLFDKFTPL 229 (482)
T ss_dssp HHHHHHHHHTHHHHSCEEEC
T ss_pred HHHHHHHHHHHHHcCCCccC
Confidence 34578888999999887653
No 7
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=10.09 E-value=1.2e+02 Score=21.03 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH--HhhhhhhH
Q 024941 42 KYWILVAMLTVLERFLDA--IASWFPMY 67 (260)
Q Consensus 42 ~YWIV~al~t~~E~~~d~--~l~wlPfY 67 (260)
.+|=..+.+.++ ++.|+ ++.|+|+|
T Consensus 22 ~~~Gaaa~v~~l-y~tdwr~IL~~IP~i 48 (56)
T 2fyu_K 22 SLWGAVGAVGLV-WATDWRLILDWVPYI 48 (56)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHTSSSSC
T ss_pred hhhhhhhhhhee-eeccHHHHHhhcCcc
Confidence 455444444444 33332 67788876
No 8
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=10.04 E-value=82 Score=21.10 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024941 104 DIDRRILELRARLWDLAI 121 (260)
Q Consensus 104 ~ID~~L~~lr~ra~d~~~ 121 (260)
+||+.+..+|.|+.|-..
T Consensus 2 kId~li~RIreRaEDSGN 19 (45)
T 1vpu_A 2 QIDRLIDRITERAEDSGN 19 (45)
T ss_dssp CHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHhhhcCCC
Confidence 589999999999877554
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=9.91 E-value=2.3e+02 Score=22.07 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHhcCcccHHHHHHHHH
Q 024941 7 TRCLILVFGYAYPAFECYKIVEKNRVEIDQLRFWCK 42 (260)
Q Consensus 7 ~~ll~~~iG~lYPaY~S~KALe~~~~d~~~l~~WL~ 42 (260)
..++..++...||--.+.|||.....+.++...||.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~ 44 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
No 10
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=9.20 E-value=3e+02 Score=20.19 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 024941 118 DLAIYYWQNCAQLSQEKFFDI 138 (260)
Q Consensus 118 d~~~~~~q~~~~~Gq~~f~e~ 138 (260)
.++..|+|.++++|.+.++++
T Consensus 9 sl~SqYfQt~TdyGKDL~EKa 29 (77)
T 2ou1_A 9 SLVSQYFQTVTDYGKDLMEKV 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHc
Done!